BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033442
(119 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|352091163|gb|AEQ61828.1| cytochrome c oxidase subunit Vb [Dimocarpus longan]
Length = 140
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 96/118 (81%), Gaps = 2/118 (1%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
MWRRICSS LKA LAL+ S+ + A+RSL S PLF +R S+DSGTSVKK+VE
Sbjct: 1 MWRRICSSHLKA--LALSHSRSASSIAVSAAANRSLASPPLFTARLLSSDSGTSVKKKVE 58
Query: 61 DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
DV P+ATGHEREEL AELEG+ +L+ID+P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 59 DVMPIATGHEREELAAELEGRKLLDIDFPVGPFGTKEAPAVVKSYYDKRIVGCPGGEG 116
>gi|388512435|gb|AFK44279.1| unknown [Lotus japonicus]
Length = 153
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/118 (62%), Positives = 86/118 (72%), Gaps = 11/118 (9%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
MWRR+ SS LK A Q A +N S S SL+ RHFS TS+KK+VE
Sbjct: 1 MWRRLLSSHLKTLATCSPQSVSTVAALNCS--SVSLL-------RHFS--DTTSIKKKVE 49
Query: 61 DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
DV P+ATGHEREEL+A LEG++ILEI++P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 50 DVMPIATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEG 107
>gi|351721897|ref|NP_001237225.1| uncharacterized protein LOC100527520 [Glycine max]
gi|255632532|gb|ACU16616.1| unknown [Glycine max]
Length = 153
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 92/120 (76%), Gaps = 15/120 (12%)
Query: 1 MWRRI-CSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSG-TSVKKR 58
MWRR+ SS LKA L+ P P +A+++L++R HF+A SG +S+KKR
Sbjct: 1 MWRRLFSSSNLKALHTTLS-------PSRPRLAAQTLLAR------HFTAQSGASSLKKR 47
Query: 59 VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
VEDV P+ATGHEREE++A+LEG++ILEI++P GPFGTK+APAVVKSY+D+RIVGCPG EG
Sbjct: 48 VEDVVPIATGHEREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEG 107
>gi|21592567|gb|AAM64516.1| cytochrome c oxidase subunit, putative [Arabidopsis thaliana]
Length = 171
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 90/126 (71%), Gaps = 8/126 (6%)
Query: 1 MWRRICSSQLKAQAL--ALAQYSCRSAPVNPSIASRSLISRPL------FASRHFSADSG 52
MWRRI SS LK+ + + A SCR A V + S S + + F+ + SA +
Sbjct: 1 MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRQIGSAAAD 60
Query: 53 TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVG 112
T+VKKRVEDV P+ATGHE+EEL+AELEG+ + +ID+P GPFGTK+APAVVKSYYD RIVG
Sbjct: 61 TAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVG 120
Query: 113 CPGGEG 118
CPGGEG
Sbjct: 121 CPGGEG 126
>gi|358248215|ref|NP_001240096.1| uncharacterized protein LOC100780886 [Glycine max]
gi|255637280|gb|ACU18970.1| unknown [Glycine max]
Length = 160
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 89/120 (74%), Gaps = 8/120 (6%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADS--GTSVKKR 58
M RR+ SS LK LA + S P + S A+R +SR+FS S T++KK+
Sbjct: 1 MLRRLLSSHLKT----LAATASSSTPRSASAAARFAALS--RSSRYFSTQSEDATAIKKK 54
Query: 59 VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
VEDV P+ATGHEREEL+AELEG+NILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 55 VEDVMPIATGHEREELQAELEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEG 114
>gi|15220092|ref|NP_178140.1| cytochrome c oxidase subunit Vb [Arabidopsis thaliana]
gi|75207492|sp|Q9SSB8.1|CX5B2_ARATH RecName: Full=Cytochrome c oxidase subunit 5b-2, mitochondrial;
Short=AtCOX5b-2; Flags: Precursor
gi|5902388|gb|AAD55490.1|AC009322_30 Unknown protein [Arabidopsis thaliana]
gi|30102586|gb|AAP21211.1| At1g80230 [Arabidopsis thaliana]
gi|110743472|dbj|BAE99622.1| hypothetical protein [Arabidopsis thaliana]
gi|332198252|gb|AEE36373.1| cytochrome c oxidase subunit Vb [Arabidopsis thaliana]
Length = 171
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 89/126 (70%), Gaps = 8/126 (6%)
Query: 1 MWRRICSSQLKAQAL--ALAQYSCRSAPVNPSIASRSLISRPL------FASRHFSADSG 52
MWRRI SS LK+ + + A SCR A V + S S + + F+ SA +
Sbjct: 1 MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAAAD 60
Query: 53 TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVG 112
T+VKKRVEDV P+ATGHE+EEL+AELEG+ + +ID+P GPFGTK+APAVVKSYYD RIVG
Sbjct: 61 TAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVG 120
Query: 113 CPGGEG 118
CPGGEG
Sbjct: 121 CPGGEG 126
>gi|357455121|ref|XP_003597841.1| Cytochrome c oxidase subunit 5B [Medicago truncatula]
gi|355486889|gb|AES68092.1| Cytochrome c oxidase subunit 5B [Medicago truncatula]
gi|388495938|gb|AFK36035.1| unknown [Medicago truncatula]
Length = 150
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 86/121 (71%), Gaps = 15/121 (12%)
Query: 1 MWRRICSS-QLKAQALALAQYSCRSAPVNPSIASRSLISRPLFA--SRHFSADSGTSVKK 57
MWRRI SS LK A S S P RS ++ FA SRH + S SVKK
Sbjct: 1 MWRRIVSSPHLKTLA-----SSSHSHP-------RSAVAGLRFAGLSRHVATQSAGSVKK 48
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
VEDV P+ATGHEREE++A+LEG+NILEID+P GPFGTK+APAVVKSYY++RIVGCPGGE
Sbjct: 49 TVEDVVPIATGHEREEIQADLEGRNILEIDHPEGPFGTKEAPAVVKSYYNRRIVGCPGGE 108
Query: 118 G 118
G
Sbjct: 109 G 109
>gi|388510728|gb|AFK43430.1| unknown [Medicago truncatula]
Length = 156
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 90/119 (75%), Gaps = 11/119 (9%)
Query: 1 MWRRIC-SSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRV 59
M RR+ SSQLK + R +P S + SL+SR F+++ S DS T +KK+V
Sbjct: 1 MLRRLLISSQLKT-------LTSRRSP--SSAVAVSLLSRHHFSTQ-SSDDSTTGIKKKV 50
Query: 60 EDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
EDV P+ATGHEREE++A+LEG++ILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 51 EDVVPIATGHEREEIQAQLEGRDILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEG 109
>gi|113734311|dbj|BAF30481.1| cytochrome c oxidase subunit Vb [Pisum sativum]
gi|113734317|dbj|BAF30484.1| cytochrome c oxidase subunit Vb [Pisum sativum]
Length = 150
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 82/118 (69%), Gaps = 9/118 (7%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
MWRR+ +S + + RSA R + SRH + S SVKKRVE
Sbjct: 1 MWRRLFTSPHLKTLSSSSLSHPRSAVAG---------IRCVDLSRHVATQSAASVKKRVE 51
Query: 61 DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
DV P+ATGHEREE++AELEG+NILEID+P GPFGTKDAPAVV+S+YD+RIVGCPGGEG
Sbjct: 52 DVVPIATGHEREEIQAELEGRNILEIDHPEGPFGTKDAPAVVRSFYDRRIVGCPGGEG 109
>gi|113734315|dbj|BAF30483.1| cytochrome c oxidase subunit Vb [Pisum sativum]
Length = 155
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 86/118 (72%), Gaps = 9/118 (7%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
M RR+ SSQLK + + S V S+ S LF+++ +D T VKK+VE
Sbjct: 1 MLRRLISSQLKTLTSSSSPLRSPSPAVAVSLLS------CLFSTQ---SDDSTVVKKKVE 51
Query: 61 DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
D+ P+ATGHEREEL+A++EG++ILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 52 DIVPIATGHEREELQAQIEGRDILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEG 109
>gi|317106755|dbj|BAJ53249.1| JHL25H03.12 [Jatropha curcas]
Length = 165
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/119 (59%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGT-SVKKRV 59
MWRR SSQLK A + + S LF R+F+AD+ + SV KRV
Sbjct: 1 MWRRAVSSQLKTLASCRSAAAAARFASPNRSIISPSPSASLF-HRYFNADAASGSVGKRV 59
Query: 60 EDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
ED+ P+ATG EREELEAEL+GK+ILEI++P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 60 EDIMPIATGSEREELEAELQGKDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEG 118
>gi|82623399|gb|ABB87114.1| cytochrome c oxidase family protein-like [Solanum tuberosum]
Length = 167
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 83/121 (68%), Gaps = 4/121 (3%)
Query: 1 MWRRICSSQLKAQALALAQYSCR-SAPVNPSIASRSLISRPL--FASRHFSADSGTSVKK 57
MWRR+ S L S R SA S++S RP F SRHFS S VKK
Sbjct: 1 MWRRLSSQVRTLSPLRSTAKSNRLSAAAVTSLSSSPATFRPTVPFISRHFSTASANVVKK 60
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
+EDV P+ATGHEREELEAE++GK++L I++P GPFGTK+APAVV+SYYDKRIVGCPG E
Sbjct: 61 -IEDVMPIATGHEREELEAEIQGKDLLAINFPEGPFGTKEAPAVVESYYDKRIVGCPGDE 119
Query: 118 G 118
G
Sbjct: 120 G 120
>gi|113734309|dbj|BAF30480.1| cytochrome c oxidase subunit Vb [Pisum sativum]
Length = 155
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 84/120 (70%), Gaps = 13/120 (10%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFS--ADSGTSVKKR 58
M RR+ SSQLK + + S V S+ S HFS +D T VKK+
Sbjct: 1 MLRRLISSQLKTLTSSSSPLRSPSPAVAVSLLSC-----------HFSTQSDDSTVVKKK 49
Query: 59 VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
VED+ P+ATGHEREEL+A++EG++ILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 50 VEDIVPIATGHEREELQAQIEGRDILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEG 109
>gi|113734313|dbj|BAF30482.1| cytochrome c oxidase subunit Vb [Pisum sativum]
gi|113734319|dbj|BAF30485.1| cytochrome c oxidase subunit Vb [Pisum sativum]
Length = 150
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 68/75 (90%)
Query: 44 SRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVK 103
SRH + S SVKKRVEDV P+ATGHEREE++AELEG+NILEID+P GPFGTKDAPAVV+
Sbjct: 35 SRHVATQSAASVKKRVEDVVPIATGHEREEIQAELEGRNILEIDHPEGPFGTKDAPAVVR 94
Query: 104 SYYDKRIVGCPGGEG 118
S+YD+RIVGCPGGEG
Sbjct: 95 SFYDRRIVGCPGGEG 109
>gi|449467060|ref|XP_004151243.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial-like
[Cucumis sativus]
Length = 174
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 94/127 (74%), Gaps = 11/127 (8%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVN-----PSIASRSLIS----RPLFASRHFSADS 51
MWRR+ SS LK+ + + SAP+ P +A+ S +S PLFA RH+++DS
Sbjct: 1 MWRRLLSSSLKSLKSLPSSSTPASAPLGCISQAPRLAAASHLSPSSTLPLFA-RHYASDS 59
Query: 52 G-TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRI 110
T +KK VEDV P+ATGHEREELEA LEGK+IL+I++P GPFGTK+APAV+KSYYD+RI
Sbjct: 60 ADTGLKKTVEDVMPIATGHEREELEASLEGKDILDINHPIGPFGTKEAPAVIKSYYDERI 119
Query: 111 VGCPGGE 117
VGCPGGE
Sbjct: 120 VGCPGGE 126
>gi|297853038|ref|XP_002894400.1| hypothetical protein ARALYDRAFT_892286 [Arabidopsis lyrata subsp.
lyrata]
gi|297340242|gb|EFH70659.1| hypothetical protein ARALYDRAFT_892286 [Arabidopsis lyrata subsp.
lyrata]
Length = 176
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 97/128 (75%), Gaps = 10/128 (7%)
Query: 1 MWRRICSSQLKAQA----LALAQYSCR---SAPVNPSIAS-RSLIS-RPLFASRHFSADS 51
MWRRI SS LK+ A A+A S R S PV +++ RS IS SRHFS++S
Sbjct: 1 MWRRIVSSNLKSLATASDFAVASSSRRFVVSKPVGLHLSTNRSTISASSSLLSRHFSSES 60
Query: 52 -GTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRI 110
GTSVKK VEDV P+ATGHEREELEAELEG+ +L+IDYP GPFGTK++PAVVKSYYDKRI
Sbjct: 61 AGTSVKKNVEDVMPIATGHEREELEAELEGRRLLDIDYPEGPFGTKESPAVVKSYYDKRI 120
Query: 111 VGCPGGEG 118
VGCPGGEG
Sbjct: 121 VGCPGGEG 128
>gi|363808204|ref|NP_001241975.1| uncharacterized protein LOC100801050 [Glycine max]
gi|255633872|gb|ACU17297.1| unknown [Glycine max]
Length = 152
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 90/120 (75%), Gaps = 16/120 (13%)
Query: 1 MWRRI-CSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSG-TSVKKR 58
MWRR+ SS LK+ AL+ P P +A+ PL +RH +A SG +SVK+R
Sbjct: 1 MWRRLFSSSNLKSLHTALS-------PSRPRLAA------PLL-TRHVTAHSGASSVKRR 46
Query: 59 VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
VEDV P+ATGH+REE++A+LEG++ILEI++P GPFGTK+APAVVKSY+D+RIVGCPG EG
Sbjct: 47 VEDVVPIATGHKREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEG 106
>gi|255553065|ref|XP_002517575.1| cytochrome C oxidase, putative [Ricinus communis]
gi|223543207|gb|EEF44739.1| cytochrome C oxidase, putative [Ricinus communis]
Length = 171
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 91/125 (72%), Gaps = 9/125 (7%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIAS---RSLISRPLFAS---RHFSADSGT- 53
MWRR SS LK LA + S ++ AS RS +S AS R+F+A++
Sbjct: 1 MWRRSLSSHLKT--LAASSSSRTTSAAASRFASPKHRSFLSPSPSASIFQRYFTAEAADG 58
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
+VK+RVED P+ATGHEREELEAEL+G++ILEI++P GPFGTK+APAVVKSYYDKR+VGC
Sbjct: 59 AVKRRVEDAMPIATGHEREELEAELQGRDILEINHPVGPFGTKEAPAVVKSYYDKRLVGC 118
Query: 114 PGGEG 118
PGGEG
Sbjct: 119 PGGEG 123
>gi|255647706|gb|ACU24314.1| unknown [Glycine max]
Length = 162
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
M RR+ SS LK A + A + + S +L L+ S ++ T++KK+VE
Sbjct: 1 MLRRLLSSHLKTLASSAAAATATPRSASASARFAALSRSCLYFST--QSEDATAIKKKVE 58
Query: 61 DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
D+ P+ATGHEREEL+AELEG+NILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 59 DIMPIATGHEREELQAELEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEG 116
>gi|356519389|ref|XP_003528355.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial-like
isoform 1 [Glycine max]
gi|356519391|ref|XP_003528356.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial-like
isoform 2 [Glycine max]
Length = 163
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 88/120 (73%), Gaps = 5/120 (4%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADS--GTSVKKR 58
M RR+ SS LK A + A + + + A + +SR + +FS S T++KK+
Sbjct: 1 MLRRLLSSHLKTLASSAAAAATATPRSASASARFAALSR---SCLYFSTQSEDATAIKKK 57
Query: 59 VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
VED+ P+ATGHEREEL+AELEG+NILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 58 VEDIMPIATGHEREELQAELEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEG 117
>gi|225442833|ref|XP_002285331.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial [Vitis
vinifera]
gi|297743391|emb|CBI36258.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 88/131 (67%), Gaps = 16/131 (12%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLIS---------RPLFASRHFSADS 51
MWR S+QL Q LA ++ + + +RS IS LF SR FSA+S
Sbjct: 1 MWRGRLSAQL--QTLARSRSAANLTRLVTGDINRSFISPSPAPFRRTASLF-SRQFSAES 57
Query: 52 GTSV----KKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYD 107
+ KKRVEDV P+ATGHEREELEA L+G++IL+ D+P GPFGTK+APAVV+SYYD
Sbjct: 58 ADNAVSKEKKRVEDVMPIATGHEREELEAALDGRDILDADHPVGPFGTKEAPAVVQSYYD 117
Query: 108 KRIVGCPGGEG 118
KRIVGCPGGEG
Sbjct: 118 KRIVGCPGGEG 128
>gi|408717409|gb|AFU52881.1| cytochrome C oxidase subunit Vb [Vitis vinifera]
Length = 176
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 87/131 (66%), Gaps = 16/131 (12%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLIS---------RPLFASRHFSADS 51
MWR S+QL Q LA ++ + + +RS IS LF SR FSA+S
Sbjct: 1 MWRGRLSAQL--QTLARSRSAANLTRLVTGDINRSFISPSPAPFRRTASLF-SRQFSAES 57
Query: 52 GTSV----KKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYD 107
+ KKR+EDV P+ATGHEREELEA L+G++IL+ D+P GPFGTK+APAVV+SYYD
Sbjct: 58 ADNAVSKEKKRIEDVMPIATGHEREELEAALDGRDILDADHPVGPFGTKEAPAVVQSYYD 117
Query: 108 KRIVGCPGGEG 118
KRI GCPGGEG
Sbjct: 118 KRIAGCPGGEG 128
>gi|145332591|ref|NP_001078161.1| cytochrome c oxidase subunit Vb [Arabidopsis thaliana]
gi|332642186|gb|AEE75707.1| cytochrome c oxidase subunit Vb [Arabidopsis thaliana]
Length = 175
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 90/126 (71%), Gaps = 8/126 (6%)
Query: 1 MWRRICSSQLKAQALALAQYSCR------SAPVNPSIAS-RSLISRPLFA-SRHFSADSG 52
MWRRI SSQLK A + S R + PV +A+ RS IS F R FS+DS
Sbjct: 1 MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDSE 60
Query: 53 TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVG 112
T K+VEDV P+ATGHE+EELEAELEG+ + +ID+P GPFGTK+APA+VKSYYDKRIVG
Sbjct: 61 TPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIVG 120
Query: 113 CPGGEG 118
CPGGEG
Sbjct: 121 CPGGEG 126
>gi|357110798|ref|XP_003557203.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial-like
[Brachypodium distachyon]
Length = 163
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 79/118 (66%), Gaps = 4/118 (3%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
MW+R S+ L A+ ALA + R+ ++ S L P F FS V+ RVE
Sbjct: 1 MWKRAASALLLARRSALAVAAHRAPSISASADVSPLRRGPAF----FSTLDAGQVRTRVE 56
Query: 61 DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
DV P+ATG EREE+EAEL+GK ++D P GPFGTK+APAV++SY+DKRIVGCPGGEG
Sbjct: 57 DVMPIATGLEREEIEAELQGKKRFDMDAPVGPFGTKEAPAVIQSYFDKRIVGCPGGEG 114
>gi|106879617|emb|CAJ38392.1| cytochrome c oxidase subunit 5b [Plantago major]
Length = 162
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 85/120 (70%), Gaps = 11/120 (9%)
Query: 1 MWRRICSS-QLKAQALALAQYSCRSA-PVNPSIASRSLISRPLFASRHFSADSGTSVKKR 58
MWRR+ ++ + + LA S RS P + A SL R FA F+ +SG +V KR
Sbjct: 5 MWRRVAATANIHLRTLA----SVRSTLPNRTAAAPESL--RSSFAL--FNTESG-NVAKR 55
Query: 59 VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
EDV P+ TGHEREEL+AEL+GK+ILEI+YP GPFGTK+ PAVVKSYYDKRIVGCPG +G
Sbjct: 56 PEDVIPIVTGHEREELQAELQGKDILEINYPEGPFGTKEEPAVVKSYYDKRIVGCPGADG 115
>gi|297830146|ref|XP_002882955.1| hypothetical protein ARALYDRAFT_479016 [Arabidopsis lyrata subsp.
lyrata]
gi|297328795|gb|EFH59214.1| hypothetical protein ARALYDRAFT_479016 [Arabidopsis lyrata subsp.
lyrata]
Length = 177
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 92/128 (71%), Gaps = 10/128 (7%)
Query: 1 MWRRICSSQLKAQA----LALAQYSCRSAPVNPS----IASRSLISRPLFA-SRHFSADS 51
MWRRI SSQLK A +A + +A V P A+RS IS F RHFS++S
Sbjct: 1 MWRRIVSSQLKTLAADVVVAASPRRSLAATVRPVGFYLAANRSAISASSFVIPRHFSSES 60
Query: 52 -GTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRI 110
T KK+VEDV P+ATGHE+EELEAELEG+ + +ID+P GPFGTK+APA+VKSYYDKRI
Sbjct: 61 VETPAKKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRI 120
Query: 111 VGCPGGEG 118
VGCPGGEG
Sbjct: 121 VGCPGGEG 128
>gi|224058705|ref|XP_002299612.1| predicted protein [Populus trichocarpa]
gi|118488066|gb|ABK95853.1| unknown [Populus trichocarpa]
gi|222846870|gb|EEE84417.1| predicted protein [Populus trichocarpa]
Length = 168
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 91/123 (73%), Gaps = 8/123 (6%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLI----SRPLFASRHFSADS-GTSV 55
MWRR+ SS L+ L + + + + +RS+I S LF +R+FSADS +V
Sbjct: 1 MWRRLASSHLRT--LVTSTSTTSARSTQSLLLNRSIINPSPSTSLF-NRYFSADSVDGAV 57
Query: 56 KKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
KKRVEDV P+ATGHEREELEAELEGK +L+IDYP GPFGTK+ PAV+KSYYDKRIVGCPG
Sbjct: 58 KKRVEDVMPIATGHEREELEAELEGKKLLDIDYPDGPFGTKEKPAVIKSYYDKRIVGCPG 117
Query: 116 GEG 118
GEG
Sbjct: 118 GEG 120
>gi|224073766|ref|XP_002304162.1| predicted protein [Populus trichocarpa]
gi|222841594|gb|EEE79141.1| predicted protein [Populus trichocarpa]
Length = 163
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 89/121 (73%), Gaps = 9/121 (7%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAP---VNPSIASRSLISRPLFASRHFSADSGTSVKK 57
MWRR+ SS LK A A A S RS +N S S S+ +R L A+ S D +VKK
Sbjct: 1 MWRRLASSHLKTLATASASASVRSTQFLLLNRS-PSASVFNRYLSAA---SVDG--AVKK 54
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
RVEDV P+ATGHEREELEAELEGK +L+ID+P GPFGTK+ P+V+KSYYDKRIVGCPGGE
Sbjct: 55 RVEDVMPIATGHEREELEAELEGKKLLDIDFPEGPFGTKEEPSVIKSYYDKRIVGCPGGE 114
Query: 118 G 118
G
Sbjct: 115 G 115
>gi|15232644|ref|NP_188185.1| cytochrome c oxidase subunit Vb [Arabidopsis thaliana]
gi|75274420|sp|Q9LW15.1|CX5B1_ARATH RecName: Full=Cytochrome c oxidase subunit 5b-1, mitochondrial;
Short=AtCOX5b-1; Flags: Precursor
gi|14194105|gb|AAK56247.1|AF367258_1 AT3g15640/MSJ11_4 [Arabidopsis thaliana]
gi|11994336|dbj|BAB02295.1| cytochrome c oxidase subunit Vb precursor-like protein [Arabidopsis
thaliana]
gi|15777879|gb|AAL05900.1| AT3g15640/MSJ11_4 [Arabidopsis thaliana]
gi|21592929|gb|AAM64879.1| putative cytochrome c oxidase subunit Vb [Arabidopsis thaliana]
gi|332642185|gb|AEE75706.1| cytochrome c oxidase subunit Vb [Arabidopsis thaliana]
Length = 176
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 90/127 (70%), Gaps = 9/127 (7%)
Query: 1 MWRRICSSQLKAQALALAQYSCR------SAPVNPSIAS-RSLISRPLFA-SRHFSADS- 51
MWRRI SSQLK A + S R + PV +A+ RS IS F R FS+DS
Sbjct: 1 MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDSV 60
Query: 52 GTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIV 111
T K+VEDV P+ATGHE+EELEAELEG+ + +ID+P GPFGTK+APA+VKSYYDKRIV
Sbjct: 61 ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIV 120
Query: 112 GCPGGEG 118
GCPGGEG
Sbjct: 121 GCPGGEG 127
>gi|242094638|ref|XP_002437809.1| hypothetical protein SORBIDRAFT_10g002940 [Sorghum bicolor]
gi|241916032|gb|EER89176.1| hypothetical protein SORBIDRAFT_10g002940 [Sorghum bicolor]
Length = 165
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
MW+R S L+ AL S ++ S SR+ PLF FS + RVE
Sbjct: 1 MWKRATSLLLRHHRSALGPRSPAASAAAASGLSRTQAPAPLF----FSTLDAAGTRTRVE 56
Query: 61 DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
DV P+ATG EREE+EAEL+GK ++D P GPFGTK+APAV++SYY+KRIVGCPGGEG
Sbjct: 57 DVMPIATGLEREEIEAELQGKKRFDMDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEG 114
>gi|297839915|ref|XP_002887839.1| hypothetical protein ARALYDRAFT_477231 [Arabidopsis lyrata subsp.
lyrata]
gi|297333680|gb|EFH64098.1| hypothetical protein ARALYDRAFT_477231 [Arabidopsis lyrata subsp.
lyrata]
Length = 171
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 88/126 (69%), Gaps = 8/126 (6%)
Query: 1 MWRRICSSQLKA--QALALAQYSCRSAPVNPSIASRSLISRPL------FASRHFSADSG 52
MWRRI SS LK+ + A SCR A V + S S + + F+ + S +
Sbjct: 1 MWRRIVSSHLKSISAGWSCAAPSCRHAVVETTHLSLSTRASSIPAYSSVFSRQIGSTAAD 60
Query: 53 TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVG 112
T+VK+RVEDV P+ATGHE+EELEAELEG+ + +ID+P GPFGTK+APAVVKSYYD RIVG
Sbjct: 61 TAVKRRVEDVMPIATGHEKEELEAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVG 120
Query: 113 CPGGEG 118
CPGGEG
Sbjct: 121 CPGGEG 126
>gi|115466344|ref|NP_001056771.1| Os06g0142700 [Oryza sativa Japonica Group]
gi|5803264|dbj|BAA83574.1| putative cytochrome c oxidase subunit Vb precursor [Oryza sativa
Japonica Group]
gi|113594811|dbj|BAF18685.1| Os06g0142700 [Oryza sativa Japonica Group]
gi|125554007|gb|EAY99612.1| hypothetical protein OsI_21590 [Oryza sativa Indica Group]
gi|125596016|gb|EAZ35796.1| hypothetical protein OsJ_20088 [Oryza sativa Japonica Group]
gi|215701067|dbj|BAG92491.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 154
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 76/118 (64%), Gaps = 13/118 (11%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
MW+R S L ++ AL + S P+I ++ R LF FS + RVE
Sbjct: 1 MWKRATSVLLHHRS-ALTRRS-------PAIGG-GVLPRALF----FSTLDAAQARTRVE 47
Query: 61 DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
DV P+ATG EREE+ AEL+GK ++D P GPFGTK+APAV++SYY+KRIVGCPGGEG
Sbjct: 48 DVMPIATGLEREEIAAELQGKKRFDMDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEG 105
>gi|326512426|dbj|BAJ99568.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326516702|dbj|BAJ96343.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 159
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 76/121 (62%), Gaps = 14/121 (11%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSI---ASRSLISRPLFASRHFSADSGTSVKK 57
MW+R A +L LA+ S +A P+I A+ L P F FS +
Sbjct: 1 MWKR-------AASLLLARRSAVAAQRAPAISGSAASGLRRAPAF----FSTLDVGQART 49
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
RVEDV P+ATG EREE+EAEL+GK ++D P GPFGTK+ PA+++SY+DKRIVGCPG E
Sbjct: 50 RVEDVMPIATGLEREEIEAELQGKKRFDMDAPVGPFGTKENPAIIQSYFDKRIVGCPGDE 109
Query: 118 G 118
G
Sbjct: 110 G 110
>gi|449469018|ref|XP_004152218.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial-like
[Cucumis sativus]
gi|449484203|ref|XP_004156815.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial-like
[Cucumis sativus]
Length = 179
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/80 (73%), Positives = 69/80 (86%), Gaps = 3/80 (3%)
Query: 41 LFASRHFSADSGTS--VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDA 98
LFA RHFSA++ +KK VEDV P+ATGHEREELEA LEG++IL+ID P GPFGTK+A
Sbjct: 53 LFA-RHFSAEAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEA 111
Query: 99 PAVVKSYYDKRIVGCPGGEG 118
PAV+KSYYD+RIVGCPGGEG
Sbjct: 112 PAVIKSYYDERIVGCPGGEG 131
>gi|296082004|emb|CBI21009.3| unnamed protein product [Vitis vinifera]
Length = 216
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 54/62 (87%), Gaps = 4/62 (6%)
Query: 57 KRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGG 116
K+VE+V P+ATGHEREELE G+ +LE +YP GPFGTK+APA+VKS+YD+RIVGCPGG
Sbjct: 119 KKVENVIPIATGHEREELE----GRTLLEANYPIGPFGTKEAPAIVKSFYDRRIVGCPGG 174
Query: 117 EG 118
EG
Sbjct: 175 EG 176
>gi|359475801|ref|XP_002282483.2| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial [Vitis
vinifera]
Length = 162
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 54/62 (87%), Gaps = 4/62 (6%)
Query: 57 KRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGG 116
K+VE+V P+ATGHEREELE G+ +LE +YP GPFGTK+APA+VKS+YD+RIVGCPGG
Sbjct: 65 KKVENVIPIATGHEREELE----GRTLLEANYPIGPFGTKEAPAIVKSFYDRRIVGCPGG 120
Query: 117 EG 118
EG
Sbjct: 121 EG 122
>gi|125571152|gb|EAZ12667.1| hypothetical protein OsJ_02582 [Oryza sativa Japonica Group]
Length = 209
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%)
Query: 28 NPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEID 87
PS R + S+ L + VEDV P+ATG EREEL AEL+G+ ++D
Sbjct: 71 QPSYGDRLMESQQLPQDYRANVPRSGDKPATVEDVMPIATGLEREELAAELKGEKRFDMD 130
Query: 88 YPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
P GPFGTK+APAV++SYY+KRIVGCPGGEG
Sbjct: 131 PPVGPFGTKEAPAVIESYYNKRIVGCPGGEG 161
>gi|115438502|ref|NP_001043555.1| Os01g0612200 [Oryza sativa Japonica Group]
gi|1841355|dbj|BAA12797.1| cytochrome c oxidase subunit Vb precursor [Oryza sativa Japonica
Group]
gi|21104683|dbj|BAB93273.1| putative cytochrome c oxidase-related [Oryza sativa Japonica Group]
gi|113533086|dbj|BAF05469.1| Os01g0612200 [Oryza sativa Japonica Group]
gi|215701018|dbj|BAG92442.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 169
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 52/60 (86%)
Query: 59 VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
VEDV P+ATG EREEL AEL+G+ ++D P GPFGTK+APAV++SYY+KRIVGCPGGEG
Sbjct: 62 VEDVMPIATGLEREELAAELKGEKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGEG 121
>gi|449524186|ref|XP_004169104.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial-like
[Cucumis sativus]
Length = 148
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 82/136 (60%), Gaps = 25/136 (18%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVN-----PSIASRSLIS----RPLFASRHFSADS 51
MWRR+ SS LK+ + + SAP+ P +A+ S +S PLFA RH+++DS
Sbjct: 1 MWRRLLSSSLKSLKSLPSSSTPASAPLGCISQAPRLAAASHLSPSSTLPLFA-RHYASDS 59
Query: 52 G-TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTK-------------- 96
T +KK VEDV P+ATGHEREELEA LEGK+IL+I++P GPFGTK
Sbjct: 60 ADTGLKKTVEDVMPIATGHEREELEASLEGKDILDINHPIGPFGTKVGVVACFVIARINF 119
Query: 97 DAPAVVKSYYDKRIVG 112
DA A ++S+ R G
Sbjct: 120 DALAFIQSFIPCRFQG 135
>gi|218188648|gb|EEC71075.1| hypothetical protein OsI_02834 [Oryza sativa Indica Group]
Length = 104
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 64 PVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
P+ATG EREEL AEL+G+ ++D P GPFGTK+APAV++SYY+KRIVGCPGGEG
Sbjct: 2 PIATGLEREELAAELKGEKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGEG 56
>gi|326487828|dbj|BAJ89753.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326488659|dbj|BAJ97941.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326502608|dbj|BAJ98932.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 167
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 79/124 (63%), Gaps = 12/124 (9%)
Query: 1 MWRRICSSQLKAQALALAQYS------CRSAPVNPSIASRSLISRPLFASRHFSADSGTS 54
MWRR+ + + A A S R+AP++ ++A+ + PL SAD +
Sbjct: 1 MWRRLQTLAPALRRAAAAAGSPPSPAIARAAPISTAVAAFRRTA-PLL-----SADKPAA 54
Query: 55 VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCP 114
VEDV P+ATG EREELEAEL+GK ++D P GPFGTK+APAV++SY+DKRIVGCP
Sbjct: 55 AATSVEDVMPIATGLEREELEAELQGKKRFDMDPPVGPFGTKEAPAVIESYFDKRIVGCP 114
Query: 115 GGEG 118
G EG
Sbjct: 115 GDEG 118
>gi|147818029|emb|CAN69212.1| hypothetical protein VITISV_033819 [Vitis vinifera]
Length = 399
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 47/55 (85%)
Query: 55 VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKR 109
++KRVE+V P+ATG EREELE LEG++IL+ D+P G FGTK+APAVV+S YDK+
Sbjct: 338 IQKRVEEVMPIATGQEREELEVALEGRDILDADHPVGLFGTKEAPAVVQSDYDKK 392
>gi|357135494|ref|XP_003569344.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial-like
[Brachypodium distachyon]
Length = 165
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 78/122 (63%), Gaps = 10/122 (8%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRH----FSADSGTSVK 56
MWRR+ Q A AL A + + P P+ A + +S A R FSAD +
Sbjct: 1 MWRRL---QTLAPALRRAAVAAGTGP-TPATARAAPLSTAAAAFRRTAPLFSADKPAT-- 54
Query: 57 KRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGG 116
VED+ P+ATG EREELE EL+GK ++D P GPFGTK+APAV++SYY+KRIVGCPGG
Sbjct: 55 PTVEDIMPIATGLEREELEGELQGKKRFDMDAPVGPFGTKEAPAVIESYYNKRIVGCPGG 114
Query: 117 EG 118
EG
Sbjct: 115 EG 116
>gi|242053593|ref|XP_002455942.1| hypothetical protein SORBIDRAFT_03g027710 [Sorghum bicolor]
gi|241927917|gb|EES01062.1| hypothetical protein SORBIDRAFT_03g027710 [Sorghum bicolor]
Length = 165
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
+VEDV P+ATG EREELEAEL+GK ++D P GPFGTK+APAV++SYY+KRIVGCPGGE
Sbjct: 57 KVEDVMPIATGLEREELEAELQGKKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGE 116
Query: 118 G 118
G
Sbjct: 117 G 117
>gi|413950589|gb|AFW83238.1| hypothetical protein ZEAMMB73_246083 [Zea mays]
Length = 165
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
RVEDV P+ATG EREELEAEL+GK ++D P GPFGTK+ PAV++SYY+KRIVGCPGGE
Sbjct: 57 RVEDVMPIATGLEREELEAELQGKKRFDMDSPVGPFGTKEEPAVIESYYNKRIVGCPGGE 116
Query: 118 G 118
G
Sbjct: 117 G 117
>gi|413950590|gb|AFW83239.1| hypothetical protein ZEAMMB73_246083 [Zea mays]
Length = 164
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
RVEDV P+ATG EREELEAEL+GK ++D P GPFGTK+ PAV++SYY+KRIVGCPGGE
Sbjct: 57 RVEDVMPIATGLEREELEAELQGKKRFDMDSPVGPFGTKEEPAVIESYYNKRIVGCPGGE 116
Query: 118 G 118
G
Sbjct: 117 G 117
>gi|116785313|gb|ABK23674.1| unknown [Picea sitchensis]
Length = 171
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 77/129 (59%), Gaps = 11/129 (8%)
Query: 1 MWRRICSSQLKAQALALAQYSC---RSAPVNPSIASRSLI---SRPLFASRHFSADSGTS 54
MWRR + A AL Q + R S AS S + + P + SA SG
Sbjct: 1 MWRRGATRLEALVASALKQRASVPHRCGGHCCSRASSSFLHSYAAPFSKTAPLSAQSGDG 60
Query: 55 VK-----KRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKR 109
K K+VE + P+ATG EREELE ELEGK +++ P+GPFGTK+APA+V+SY+DKR
Sbjct: 61 EKLLKKEKQVEAIMPIATGLEREELEFELEGKLRFDLNPPSGPFGTKEAPAIVESYFDKR 120
Query: 110 IVGCPGGEG 118
IVGCPGG G
Sbjct: 121 IVGCPGGAG 129
>gi|2995943|gb|AAC08397.1| cytochrome c oxidase subunit Vb precursor [Mesembryanthemum
crystallinum]
Length = 109
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 66/112 (58%), Gaps = 11/112 (9%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFA------SRHFSADSGTS 54
MWRR+ S LK LA + S S+ + AS + + P F SRHF+A S
Sbjct: 1 MWRRLVLSNLKT--LASSSSSSSSSSIVHRSASSIVRASPSFRPSSSIFSRHFAAASDNV 58
Query: 55 VK-KRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSY 105
V KR EDV P+ATGHEREELEAEL+GK+ILEI+Y K A+VKSY
Sbjct: 59 VSSKRPEDVMPIATGHEREELEAELQGKDILEINYQMLLAPRKS--AIVKSY 108
>gi|168031320|ref|XP_001768169.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680607|gb|EDQ67042.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 157
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 26 PVNPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILE 85
P P + + S+ F + F A G+ D +ATG EREELE + +GK +
Sbjct: 24 PAGPPPTAALMSSQRWFNASGFRA--GSHAPSGALDEFGIATGVEREELEYQSQGKKRFD 81
Query: 86 IDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
+D P GPFGTK+APA+++S YD+RIVGC GG G
Sbjct: 82 LDPPRGPFGTKEAPAIIESNYDERIVGCSGGLG 114
>gi|195644040|gb|ACG41488.1| cytochrome c oxidase polypeptide Vb [Zea mays]
Length = 166
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 59 VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
VEDV P+ATG EREELEAEL+GK ++D GPFGTK+ P+VV+SYY+KRIVGCPGGEG
Sbjct: 60 VEDVMPIATGLEREELEAELKGKKRFDMDPLVGPFGTKEEPSVVESYYNKRIVGCPGGEG 119
>gi|195605746|gb|ACG24703.1| cytochrome c oxidase polypeptide Vb [Zea mays]
gi|195638444|gb|ACG38690.1| cytochrome c oxidase polypeptide Vb [Zea mays]
gi|414881816|tpg|DAA58947.1| TPA: cytochrome c oxidase polypeptide Vb [Zea mays]
Length = 165
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 59 VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
VEDV P+ATG EREELEAEL+GK ++D GPFGTK+ P+VV+SYY+KRIVGCPGGEG
Sbjct: 58 VEDVMPIATGLEREELEAELKGKKRFDMDPLVGPFGTKEEPSVVESYYNKRIVGCPGGEG 117
>gi|226491942|ref|NP_001144681.1| uncharacterized protein LOC100277708 [Zea mays]
gi|194695778|gb|ACF81973.1| unknown [Zea mays]
gi|195645610|gb|ACG42273.1| hypothetical protein [Zea mays]
Length = 104
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 48/55 (87%)
Query: 64 PVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
P+ATG EREELEAEL+GK ++D P GPFGTK+ PAV++SYY+KRIVGCPGGEG
Sbjct: 2 PIATGLEREELEAELQGKKRFDMDSPVGPFGTKEEPAVIESYYNKRIVGCPGGEG 56
>gi|302794065|ref|XP_002978797.1| hypothetical protein SELMODRAFT_418496 [Selaginella moellendorffii]
gi|302805919|ref|XP_002984710.1| hypothetical protein SELMODRAFT_423814 [Selaginella moellendorffii]
gi|300147692|gb|EFJ14355.1| hypothetical protein SELMODRAFT_423814 [Selaginella moellendorffii]
gi|300153606|gb|EFJ20244.1| hypothetical protein SELMODRAFT_418496 [Selaginella moellendorffii]
Length = 130
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 57 KRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGG 116
K ++D+ +ATG EREELE GK + + P GPFGT + PA+++S+YD+RIVGCPGG
Sbjct: 26 KDIDDLG-IATGLEREELEFAKAGKKRWD-EPPVGPFGTAEKPAIIESWYDERIVGCPGG 83
Query: 117 EG 118
G
Sbjct: 84 PG 85
>gi|42562709|ref|NP_175680.2| cytochrome c oxidase-related protein [Arabidopsis thaliana]
gi|347602498|sp|Q9SSS5.2|CX5BL_ARATH RecName: Full=Putative cytochrome c oxidase subunit 5b-like
gi|332194721|gb|AEE32842.1| cytochrome c oxidase-related protein [Arabidopsis thaliana]
Length = 90
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 74 LEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
L+ E G+ +L+ID+P PFGTK++PAVV+SY+DKR +GC GGEG
Sbjct: 4 LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEG 48
>gi|5903035|gb|AAD55594.1|AC008016_4 Similar to gb|D85381 cytochrome c oxidase subunit Vb precursor from
Oryza sativa. ESTs gb|R30504 and gb|AA598195 come from
this gene, partial [Arabidopsis thaliana]
Length = 102
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 34/39 (87%)
Query: 80 GKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
G+ +L+ID+P PFGTK++PAVV+SY+DKR +GC GGEG
Sbjct: 1 GRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEG 39
>gi|428185747|gb|EKX54599.1| hypothetical protein GUITHDRAFT_160714 [Guillardia theta CCMP2712]
Length = 153
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER E+ AE+ G+ I + ++ PFGTK+ P V++S +D+RIVGCPG
Sbjct: 60 ATGLERAEMLAEMNGEKIFD-EHMITPFGTKENPVVIESIFDERIVGCPG 108
>gi|168056288|ref|XP_001780153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668465|gb|EDQ55072.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 81
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 80 GKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
GK ++D P GPFGTK+APAV++S YD+R+VGC GG G
Sbjct: 1 GKKRFDLDPPRGPFGTKEAPAVIESNYDERVVGCSGGIG 39
>gi|147770045|emb|CAN74336.1| hypothetical protein VITISV_010832 [Vitis vinifera]
Length = 110
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Query: 84 LEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
L I +P PF ++APAVV+SYYDKRIVGCPGGEG
Sbjct: 6 LIIFFPL-PFLLREAPAVVQSYYDKRIVGCPGGEG 39
>gi|384250024|gb|EIE23504.1| hypothetical protein COCSUDRAFT_53359 [Coccomyxa subellipsoidea
C-169]
Length = 161
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCP 114
ATG ER E+E +L K+I D+ PFGT+D P V S + +RIVG P
Sbjct: 72 ATGLERAEMEGQLHNKDIFHEDWLDAPFGTEDKPVEVTSSFSERIVGVP 120
>gi|195649575|gb|ACG44255.1| cytochrome c oxidase polypeptide Vb [Zea mays]
Length = 190
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
MWRR+ + + A + + V S + R S S+ +VE
Sbjct: 1 MWRRLQTLAPSLRRAAASSSPASARAVPLSTVPVAAFRR---TSTLLSSPGDKPAPSKVE 57
Query: 61 DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDA---------------------- 98
DV P+ATG EREELEAEL+GK ++D GPFGTK
Sbjct: 58 DVMPIATGLEREELEAELQGKKRFDMDPAVGPFGTKVGFSRSNDCIFLWDGESSFFLKLS 117
Query: 99 ------PAVVKSYYDKRIVGCPGGEG 118
AV++SYY+KRIVGCPG EG
Sbjct: 118 PVRTVKLAVIESYYNKRIVGCPGAEG 143
>gi|449017309|dbj|BAM80711.1| cytochrome c oxidase subunit Vb [Cyanidioschyzon merolae strain
10D]
Length = 209
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 22 CRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGK 81
C S S +S SL A+ S D T ++ V P A E + G
Sbjct: 76 CASIATKASGSSASLSPPRASAAMDTSNDEATDLQPPVRGAPPGAM----PTAEDQATGL 131
Query: 82 NILEIDYPT---------GPFGTKDAPAVVKSYYDKRIVGCPG 115
LE++YP GPFGT DAP +V+S Y+ RIVGC G
Sbjct: 132 ERLELEYPDLFKHNEVIRGPFGTMDAPVMVESAYNSRIVGCTG 174
>gi|414884523|tpg|DAA60537.1| TPA: hypothetical protein ZEAMMB73_502601 [Zea mays]
Length = 144
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 23/25 (92%)
Query: 94 GTKDAPAVVKSYYDKRIVGCPGGEG 118
G ++ P+VV+SYY+KRIVGCPGGEG
Sbjct: 72 GQREEPSVVESYYNKRIVGCPGGEG 96
>gi|242091922|ref|XP_002436451.1| hypothetical protein SORBIDRAFT_10g002915 [Sorghum bicolor]
gi|241914674|gb|EER87818.1| hypothetical protein SORBIDRAFT_10g002915 [Sorghum bicolor]
Length = 39
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 22/22 (100%)
Query: 97 DAPAVVKSYYDKRIVGCPGGEG 118
+APAV++SYY+KRIVGCPGGEG
Sbjct: 1 EAPAVIQSYYNKRIVGCPGGEG 22
>gi|449665816|ref|XP_002163171.2| PREDICTED: uncharacterized protein LOC100211146 [Hydra
magnipapillata]
Length = 320
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 6/53 (11%)
Query: 65 VATGHEREELEAELEGK----NILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
+ATG ER+E+EA L G N+ I+ GP GT++AP +V S D+RI+GC
Sbjct: 230 IATGTERKEIEAILAGNPDPFNMHTIN--KGPPGTREAPTLVPSMCDERIIGC 280
>gi|260827379|ref|XP_002608642.1| hypothetical protein BRAFLDRAFT_172198 [Branchiostoma floridae]
gi|229293994|gb|EEN64652.1| hypothetical protein BRAFLDRAFT_172198 [Branchiostoma floridae]
Length = 119
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 31 IASRSLISRPLFAS--RHFSADSGTSVKKRVEDVNPV----ATGHEREELEAELEG-KNI 83
+ASR L+ R +F+S R + T V+ P ATG E+ EL+A+ G +
Sbjct: 1 MASR-LLCRQIFSSVRRAVVPPAATGVRNMAVGGVPTDEEQATGLEKRELDAKKAGIADP 59
Query: 84 LEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
++ T P GT+D+P +V S Y++R+VGC
Sbjct: 60 FSMEINTTPPGTRDSPCMVPSIYERRLVGC 89
>gi|345317645|ref|XP_001520188.2| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Ornithorhynchus anatinus]
Length = 187
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE L AE +G + + P G GT++ P +V S DKRIVGC
Sbjct: 102 ATGLEREILMAEKKGLDPYNLLAPKGAAGTREEPNLVPSITDKRIVGC 149
>gi|449531497|ref|XP_004172722.1| PREDICTED: cytochrome c oxidase subunit 5b-1, mitochondrial-like,
partial [Cucumis sativus]
Length = 69
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/21 (85%), Positives = 21/21 (100%)
Query: 97 DAPAVVKSYYDKRIVGCPGGE 117
+APAV+KSYYD+RIVGCPGGE
Sbjct: 1 EAPAVIKSYYDERIVGCPGGE 21
>gi|330803497|ref|XP_003289742.1| hypothetical protein DICPUDRAFT_56297 [Dictyostelium purpureum]
gi|325080176|gb|EGC33743.1| hypothetical protein DICPUDRAFT_56297 [Dictyostelium purpureum]
Length = 120
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 90 TGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
TGPFGT P +V+S Y+ RI+ C GG+G
Sbjct: 53 TGPFGTLKTPVIVESIYNSRIIACEGGDG 81
>gi|49456465|emb|CAG46553.1| COX5B [Homo sapiens]
Length = 129
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + +
Sbjct: 11 TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S DKRIVGC
Sbjct: 67 PKGASGTREDPNLVPSISDKRIVGC 91
>gi|308799181|ref|XP_003074371.1| Cytochrome c oxidase, subunit Vb/COX4 (ISS) [Ostreococcus tauri]
gi|116000542|emb|CAL50222.1| Cytochrome c oxidase, subunit Vb/COX4 (ISS) [Ostreococcus tauri]
Length = 202
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 47 FSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSY 105
F+ S T V +E+ ATG +EELE +L G++I + + P GT+++P VV+S
Sbjct: 21 FARASSTGVITNLEN----ATGLYKEELEGKLRGEDIFDHHAFLRAPQGTEESPCVVEST 76
Query: 106 YDKRIVGCP 114
+ R+VG P
Sbjct: 77 MEYRVVGSP 85
>gi|60833885|gb|AAX37069.1| cytochrome c oxidase subunit Vb [synthetic construct]
Length = 130
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + +
Sbjct: 11 TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S DKRIVGC
Sbjct: 67 PKGASGTREDPNLVPSISDKRIVGC 91
>gi|452823099|gb|EME30112.1| cytochrome c oxidase subunit Vb [Galdieria sulphuraria]
Length = 207
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 66 ATGHEREELEAELEGKN---ILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
ATG ER ELE +N + PFGTK+ P ++ S YD RI+GC G E
Sbjct: 109 ATGSERAELEDPDLYRNPEKYVNSRVMIAPFGTKEKPLLIPSRYDSRIIGCTGREA 164
>gi|402891639|ref|XP_003909050.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Papio anubis]
Length = 182
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GTK+ P +V S +KRIVGC
Sbjct: 97 ATGLEREVMLAARKGLDPYNILAPKGTSGTKEDPNLVPSVTNKRIVGC 144
>gi|196008853|ref|XP_002114292.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190583311|gb|EDV23382.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 148
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 51 SGTSVKKRVEDVNPVATGHEREELEAELEGK-NILEIDYPTGPFGTKDAPAVVKSYYDKR 109
S V R+ + ATG E+ E +A + G + ++ + GP+GT P V S++D+R
Sbjct: 51 SDVGVTGRIPSASEQATGKEKFEHDAMMTGNTDPFDMSFHEGPWGTAVNPRGVPSHFDER 110
Query: 110 IVGC 113
I+GC
Sbjct: 111 ILGC 114
>gi|395853680|ref|XP_003799332.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Otolemur garnettii]
Length = 130
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P G GTK+ P +V S DKRIVGC
Sbjct: 45 ATGLEREIMMAARKGLDPYNMLPPKGASGTKEDPNLVPSITDKRIVGC 92
>gi|393231487|gb|EJD39079.1| COX5B-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 152
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 17 LAQYSCRSAPVNPSIASR--SLISRPLFASRHFSADSGTS---VKK-----RVEDVNPVA 66
+ + + R+APV +ASR ++R L + ++D V K V A
Sbjct: 1 MLRLATRAAPVRALLASRPRMQVARALSVTARAASDHAAEPIVVGKGAPAGEVPTSQQQA 60
Query: 67 TGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSY-YDKRIVGCPG 115
TG ER +L E+EG+ ++D GT P +VKSY Y +R+VGC G
Sbjct: 61 TGLERLQLVGEMEGQEFFDMDPLYIDRIGTLKDPILVKSYGYRERLVGCTG 111
>gi|426224085|ref|XP_004006204.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Ovis aries]
Length = 129
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 31 IASRSLISRPLFASRHFSAD--SGTSVKKRVEDVNPV------ATGHEREELEAELEGKN 82
+ASR L AS+ A +G SV + V V ATG ERE + A +G++
Sbjct: 1 MASRLLRGAGALASQALRARGPNGVSVVRSVASGGGVPTDEEQATGLEREVMLAARKGQD 60
Query: 83 ILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
I P GTK+ P +V S +KRIVGC
Sbjct: 61 PYNILAPKATSGTKEDPNLVPSISNKRIVGC 91
>gi|109103898|ref|XP_001100566.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Macaca mulatta]
Length = 129
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVMLAARKGLDPYNILPPKGASGTKEDPNLVPSITNKRIVGC 91
>gi|180937|gb|AAA52060.1| COX5B, partial [Homo sapiens]
gi|180941|gb|AAA52061.1| cytochrome c oxidase precursor (EC 1.9.3.1) [Homo sapiens]
Length = 129
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + +
Sbjct: 11 TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S +KRIVGC
Sbjct: 67 PKGASGTREDPNLVPSISNKRIVGC 91
>gi|320165073|gb|EFW41972.1| hypothetical protein CAOG_07104 [Capsaspora owczarzaki ATCC 30864]
Length = 157
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 66 ATGHEREELEAELEG----KNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
ATG ER+E++ ++ ++ TGP GTK P V+ S+YD RI C G EG
Sbjct: 58 ATGPERKEMDFLAHHPHGTQDPFGREHITGPLGTKTNPIVIPSHYDYRISACMGTEG 114
>gi|443900103|dbj|GAC77430.1| cytochrome c oxidase, subunit Vb/COX4, partial [Pseudozyma
antarctica T-34]
Length = 136
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL +L+G+ + +++ GT + P +KSY+ RIVGC G
Sbjct: 44 ATGLERFELLGKLQGQEVFDMEPLQMTHLGTTENPIQIKSYWPTRIVGCTG 94
>gi|119622335|gb|EAX01930.1| cytochrome c oxidase subunit Vb [Homo sapiens]
Length = 182
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + +
Sbjct: 64 TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 119
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S +KRIVGC
Sbjct: 120 PKGASGTREDPNLVPSISNKRIVGC 144
>gi|156373694|ref|XP_001629446.1| predicted protein [Nematostella vectensis]
gi|156216446|gb|EDO37383.1| predicted protein [Nematostella vectensis]
Length = 91
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 66 ATGHEREELEAELEG-KNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG E+ E +A + G ++ + GP GTKD P +V S Y++RIVGC
Sbjct: 3 ATGLEKAEYDALVAGYEDPFRLKMANGPPGTKDNPTIVPSGYEERIVGC 51
>gi|426336507|ref|XP_004031511.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Gorilla gorilla gorilla]
Length = 182
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + I
Sbjct: 64 TLAAQALRARGPSGAAAVRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNILA 119
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S +KRIVGC
Sbjct: 120 PKGASGTREDPNLVPSISNKRIVGC 144
>gi|77404292|ref|NP_001029218.1| cytochrome c oxidase subunit 5B, mitochondrial precursor [Bos
taurus]
gi|109940067|sp|P00428.2|COX5B_BOVIN RecName: Full=Cytochrome c oxidase subunit 5B, mitochondrial;
AltName: Full=Cytochrome c oxidase polypeptide VIa;
AltName: Full=Cytochrome c oxidase polypeptide Vb;
Flags: Precursor
gi|324357508|pdb|2Y69|F Chain F, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
gi|324357521|pdb|2Y69|S Chain S, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
gi|74268063|gb|AAI02580.1| Cytochrome c oxidase subunit Vb [Bos taurus]
gi|151556362|gb|AAI47856.1| COX5B protein [Bos taurus]
gi|296482788|tpg|DAA24903.1| TPA: cytochrome c oxidase subunit 5B, mitochondrial precursor [Bos
taurus]
Length = 129
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++AS++L +R P S S SG V E ATG ERE + A +G++ I
Sbjct: 11 ALASQALRARGPNGVSVVRSMASGGGVPTDEEQ----ATGLEREVMLAARKGQDPYNILA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P GTK+ P +V S +KRIVGC
Sbjct: 67 PKATSGTKEDPNLVPSITNKRIVGC 91
>gi|67083995|gb|AAY66932.1| cytochrome c oxidase polypeptide Vb [Ixodes scapularis]
Length = 122
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 30 SIASRSLIS--RP--LFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILE 85
S+ RS+ RP L +R F ++ +KR+ D ATG E++EL A G N
Sbjct: 3 SVLGRSIAKNVRPALLLTARRFKSE-----EKRIYDAMEYATGIEKKELLARAAG-NDDP 56
Query: 86 ID---YPTGPFGTKDAPAVVKSYYDKRIVGC 113
D + GP GTKD P ++ S+ +KR++GC
Sbjct: 57 FDMRVFKRGP-GTKDNPNLIPSHLEKRMIGC 86
>gi|17017988|ref|NP_001853.2| cytochrome c oxidase subunit 5B, mitochondrial precursor [Homo
sapiens]
gi|20141332|sp|P10606.2|COX5B_HUMAN RecName: Full=Cytochrome c oxidase subunit 5B, mitochondrial;
AltName: Full=Cytochrome c oxidase polypeptide Vb;
Flags: Precursor
gi|13623259|gb|AAH06229.1| Cytochrome c oxidase subunit Vb [Homo sapiens]
gi|30582323|gb|AAP35388.1| cytochrome c oxidase subunit Vb [Homo sapiens]
gi|60656153|gb|AAX32640.1| cytochrome c oxidase subunit Vb [synthetic construct]
gi|62988892|gb|AAY24279.1| unknown [Homo sapiens]
gi|124126833|gb|ABM92189.1| cytochrome c oxidase subunit Vb [synthetic construct]
gi|157927970|gb|ABW03281.1| cytochrome c oxidase subunit Vb [synthetic construct]
gi|208966106|dbj|BAG73067.1| cytochrome c oxidase subunit Vb [synthetic construct]
Length = 129
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + +
Sbjct: 11 TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S +KRIVGC
Sbjct: 67 PKGASGTREDPNLVPSISNKRIVGC 91
>gi|343426226|emb|CBQ69757.1| probable COX4-cytochrome-c oxidase chain IV [Sporisorium reilianum
SRZ2]
Length = 153
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL +L+G + +++ GT + P VKSY+ RIVGC G
Sbjct: 61 ATGLERFELLGKLQGVEVFDMEPLQMTHLGTTEKPIKVKSYWPTRIVGCTG 111
>gi|30584725|gb|AAP36615.1| Homo sapiens cytochrome c oxidase subunit Vb [synthetic construct]
gi|60653101|gb|AAX29245.1| cytochrome c oxidase subunit Vb [synthetic construct]
gi|60653103|gb|AAX29246.1| cytochrome c oxidase subunit Vb [synthetic construct]
Length = 130
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + +
Sbjct: 11 TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S +KRIVGC
Sbjct: 67 PKGASGTREDPNLVPSISNKRIVGC 91
>gi|241632447|ref|XP_002408597.1| cytochrome C oxidase polypeptide Vb [Ixodes scapularis]
gi|215501199|gb|EEC10693.1| cytochrome C oxidase polypeptide Vb [Ixodes scapularis]
Length = 124
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 30 SIASRSLIS--RP--LFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILE 85
S+ RS+ RP L +R F ++ +KR+ D ATG E++EL A G N
Sbjct: 5 SVLGRSIAKNVRPALLLTARRFKSE-----EKRIYDAMEYATGIEKKELLARAAG-NDDP 58
Query: 86 ID---YPTGPFGTKDAPAVVKSYYDKRIVGC 113
D + GP GTKD P ++ S+ +KR++GC
Sbjct: 59 FDMRVFKRGP-GTKDNPNLIPSHLEKRMIGC 88
>gi|118490698|ref|XP_001238658.1| cytochrome c oxidase subunit, putative [Eimeria tenella strain
Houghton]
gi|109238441|emb|CAK51405.1| cytochrome c oxidase subunit, putative [Eimeria tenella]
Length = 220
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
S K+ D+ E + + LE L+ GPFGT P +V S + +RIVGC
Sbjct: 28 SYKQLARDMGLQIVTEENQHMVGLLELYEYLKTAPFVGPFGTTQNPVLVPSVHTERIVGC 87
Query: 114 PGGEG 118
GG G
Sbjct: 88 TGGTG 92
>gi|355751511|gb|EHH55766.1| hypothetical protein EGM_05033 [Macaca fascicularis]
Length = 129
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVMLAARKGLDPYNILPPKGASGTKEDPNLVPSITNKRIVGC 91
>gi|440909444|gb|ELR59354.1| Cytochrome c oxidase subunit 5B, mitochondrial [Bos grunniens
mutus]
Length = 129
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++AS++L +R P S S SG V E ATG ERE + A +G++ I
Sbjct: 11 ALASQALRARGPNGVSVVRSMASGGGVPTDEEQ----ATGLEREVMLAARKGQDPYNILA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P GTK+ P +V S +KRIVGC
Sbjct: 67 PKATSGTKEDPNLVPSITNKRIVGC 91
>gi|71021437|ref|XP_760949.1| hypothetical protein UM04802.1 [Ustilago maydis 521]
gi|46101024|gb|EAK86257.1| hypothetical protein UM04802.1 [Ustilago maydis 521]
Length = 153
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 15 LALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKK-RVEDVNPVATGHEREE 73
+A A + R AP + ASR S L + G K+ + ATG ER E
Sbjct: 9 VARAPAALRVAPTPVTSASRLFTSSALRFAAGPPVIQGEGAKEGEIPTDEQQATGLERFE 68
Query: 74 LEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
L +L+G ++ +++ GT + P VKS++ RIVGC G
Sbjct: 69 LLGKLQGVDVFDMEPLQMTHLGTTEKPIKVKSFWPSRIVGCTG 111
>gi|49456415|emb|CAG46528.1| COX5B [Homo sapiens]
gi|60824360|gb|AAX36677.1| cytochrome c oxidase subunit Vb [synthetic construct]
Length = 129
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + +
Sbjct: 11 TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S +KRIVGC
Sbjct: 67 PKGASGTREDPNLVPSISNKRIVGC 91
>gi|441676572|ref|XP_003282477.2| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
isoform 1 [Nomascus leucogenys]
Length = 182
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GT++ P +V S +KRIVGC
Sbjct: 97 ATGLEREVMLAAKKGLDPYNILAPKGASGTREDPNLVPSISNKRIVGC 144
>gi|109108888|ref|XP_001099921.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
isoform 2 [Macaca mulatta]
Length = 129
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVMLAARKGLDPYNILPPKGASGTKEDPNLVPSITNKRIVGC 91
>gi|355750325|gb|EHH54663.1| hypothetical protein EGM_15546 [Macaca fascicularis]
Length = 136
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GTK+ P +V S +KRIVGC
Sbjct: 51 ATGLEREVMLAARKGLDPYNILPPKGASGTKEDPNLVPSITNKRIVGC 98
>gi|194220398|ref|XP_001493773.2| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Equus caballus]
Length = 129
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE L A +G + I P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVLMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGC 91
>gi|109079278|ref|XP_001098868.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Macaca mulatta]
Length = 136
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GTK+ P +V S +KRIVGC
Sbjct: 51 ATGLEREVMLAARKGLDPYNILPPKGASGTKEDPNLVPSITNKRIVGC 98
>gi|405958424|gb|EKC24554.1| Cytochrome c oxidase subunit 5B, mitochondrial [Crassostrea gigas]
Length = 171
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEID---YPTGP-FGTKDAPAVVKSYYDKRIVGC 113
+V D A G ER E+ +EGK+ E YP FGTK+ P V S +D+R+VGC
Sbjct: 58 KVPDKGGHAVGLERYEILCRMEGKDPWEDSVSYYPRAKGFGTKENPVPVPSVFDRRLVGC 117
>gi|403301300|ref|XP_003941333.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Saimiri boliviensis boliviensis]
Length = 126
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GTK+ P +V S +KRIVGC
Sbjct: 41 ATGLEREIMLAARKGLDPYNILPPKGASGTKEDPNLVPSVTNKRIVGC 88
>gi|353227584|emb|CCA78087.1| probable COX4-cytochrome-c oxidase chain IV [Piriformospora indica
DSM 11827]
Length = 154
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPG 115
ATG ER +L ++EG ++ + TGP GT + P +V SY ++RIVGC G
Sbjct: 61 ATGLERLQLLGQMEGVDV----FNTGPLIMSKAGTLEDPTLVPSYSEERIVGCNG 111
>gi|145341548|ref|XP_001415868.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576091|gb|ABO94160.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 124
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 49 ADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYD 107
A SG V +E+ ATG + ELE L+G++I + + P GTK++P VV+S +
Sbjct: 24 AYSGGGVVTNLEN----ATGLYKAELEGRLKGEDIFDHHAFLRAPTGTKESPCVVESTME 79
Query: 108 KRIVGCP 114
R+VG P
Sbjct: 80 YRVVGSP 86
>gi|380794635|gb|AFE69193.1| cytochrome c oxidase subunit 5B, mitochondrial precursor, partial
[Macaca mulatta]
Length = 101
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GTK+ P +V S +KRIVGC
Sbjct: 16 ATGLEREVMLAARKGLDPYNILPPKGASGTKEDPNLVPSITNKRIVGC 63
>gi|328868732|gb|EGG17110.1| cytochrome c oxidase subunit V [Dictyostelium fasciculatum]
Length = 289
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 93 FGTKDAPAVVKSYYDKRIVGCPGGEG 118
FGT +P +V+S +D RIVGC GG+G
Sbjct: 225 FGTIKSPVIVESIFDNRIVGCEGGDG 250
>gi|288856322|ref|NP_001165813.1| cytochrome c oxidase subunit 5B, mitochondrial [Nasonia
vitripennis]
Length = 122
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 35 SLISRPLF--ASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPT-- 90
SL R +F A R + S+++++ D ATG E+ E+ AEL G N D
Sbjct: 3 SLCRRAIFQVARRPLHMSACRSMEEKMADPLDHATGIEKAEMLAELAG-NDDPFDTKVMK 61
Query: 91 -GPFGTKDAPAVVKSYYDKRIVGC 113
GP GTK+ P +V S++ R+VGC
Sbjct: 62 RGP-GTKECPNLVGSFFKSRLVGC 84
>gi|149287028|gb|ABR23413.1| cytochrome c oxidase polyprotein Vb [Ornithodoros parkeri]
Length = 122
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 30 SIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEID-- 87
S+ RSL+ A +A S +KR+ D A G E+ EL+A G N D
Sbjct: 3 SLVGRSLVKNARRAL-IINARRYKSEEKRIFDAREYACGKEKLELDAIAAG-NEDPFDMR 60
Query: 88 -YPTGPFGTKDAPAVVKSYYDKRIVGC 113
+ GP GTKD P ++ SY +KR++GC
Sbjct: 61 VFKRGP-GTKDNPNLIPSYLEKRMIGC 86
>gi|397469068|ref|XP_003806186.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like [Pan
paniscus]
Length = 182
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + I
Sbjct: 64 TLAAQALRARGPSGAAAVRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNILA 119
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S KRIVGC
Sbjct: 120 PKGASGTREDPNLVPSISSKRIVGC 144
>gi|255083286|ref|XP_002504629.1| predicted protein [Micromonas sp. RCC299]
gi|226519897|gb|ACO65887.1| predicted protein [Micromonas sp. RCC299]
Length = 124
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 29 PSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILE-ID 87
P + ++ P++A+R D K V ATG E +EL+A EGK+ + D
Sbjct: 8 PMDSMHRTVAAPIYAARRAMGD-----KAPVSTDWEHATGLELKELQAAAEGKDFFDHYD 62
Query: 88 YPTGPFGTKDAPAVVKSYYDKRIVGC 113
+ P GTK++P VV S R+VG
Sbjct: 63 FLKQPNGTKESPVVVTSSMPYRVVGA 88
>gi|332813880|ref|XP_001154903.2| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
isoform 1 [Pan troglodytes]
Length = 182
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + I
Sbjct: 64 TLAAQALRARGPSGAAAVRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNILA 119
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S KRIVGC
Sbjct: 120 PKGASGTREDPNLVPSISSKRIVGC 144
>gi|355567111|gb|EHH23490.1| hypothetical protein EGK_06965, partial [Macaca mulatta]
Length = 128
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GTK+ P +V S +KR+VGC
Sbjct: 43 ATGLEREVMLAARKGLDPYNILPPKGASGTKEDPNLVPSITNKRVVGC 90
>gi|110645542|gb|AAI18884.1| LOC733498 protein [Xenopus (Silurana) tropicalis]
Length = 136
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER+ L+A +G + I P GTK+ P +V S KRIVGC
Sbjct: 51 ATGLERKTLQAMKKGLDPYSILKPKSYLGTKEDPHIVPSINKKRIVGC 98
>gi|432906476|ref|XP_004077550.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Oryzias latipes]
Length = 128
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER +EA +GK+ I P GTK+ P +V S +KR+VGC
Sbjct: 43 ATGLERATMEALKQGKDPYSILKPKHYTGTKEDPHIVPSIGNKRLVGC 90
>gi|301614863|ref|XP_002936901.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial [Xenopus
(Silurana) tropicalis]
gi|89269929|emb|CAJ81708.1| Novel protein similar to cytochrome c oxidase subunit Vb [Xenopus
(Silurana) tropicalis]
gi|165970833|gb|AAI58297.1| LOC733498 protein [Xenopus (Silurana) tropicalis]
Length = 131
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER+ L+A +G + I P GTK+ P +V S KRIVGC
Sbjct: 46 ATGLERKTLQAMKKGLDPYSILKPKSYLGTKEDPHIVPSINKKRIVGC 93
>gi|167525136|ref|XP_001746903.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774683|gb|EDQ88310.1| predicted protein [Monosiga brevicollis MX1]
Length = 155
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 48 SADSGT---SVKKRVEDVNPVATGHEREELEAELEGKNI---LEIDYPTGPFGTKDAPAV 101
+AD T V+ R+ D ATG ER+E+ +G + LE GP GTK++P +
Sbjct: 46 TADPATVEHGVEGRIPDNWEQATGMERKEMIEMAKGNSDPFGLE-GLKWGPVGTKESPRM 104
Query: 102 VKSYYDKRIVGC 113
+ S+ D+RIVGC
Sbjct: 105 IPSHVDERIVGC 116
>gi|148227910|ref|NP_001085056.1| cytochrome c oxidase subunit Vb, gene 2 [Xenopus laevis]
gi|47940292|gb|AAH72244.1| MGC82295 protein [Xenopus laevis]
Length = 131
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER+ L+A +G + I P GTK+ P +V S KRIVGC
Sbjct: 46 ATGLERKTLQAMKKGLDPYSILKPKSYLGTKEDPHIVPSINKKRIVGC 93
>gi|296194331|ref|XP_002744991.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Callithrix jacchus]
Length = 136
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P G GTK+ P +V S +KRIVGC
Sbjct: 51 ATGLEREIMLAARKGLDPYNILPPKGASGTKEDPNLVPSVTNKRIVGC 98
>gi|410329069|gb|JAA33481.1| cytochrome c oxidase subunit Vb [Pan troglodytes]
Length = 129
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + I
Sbjct: 11 TLAAQALRARGPSGAAAVRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNILA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S KRIVGC
Sbjct: 67 PKGASGTREDPNLVPSISSKRIVGC 91
>gi|223590|prf||0902159A oxidase IV,cytochrome
Length = 97
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G++ I P GTK+ P +V S +KRIVGC
Sbjct: 13 ATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGC 60
>gi|384488064|gb|EIE80244.1| hypothetical protein RO3G_04949 [Rhizopus delemar RA 99-880]
Length = 148
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
+TG ER EL A LEGK + +++ GT P VVKS+ R VGC G
Sbjct: 56 STGLERMELLATLEGKQLFDMEPLNMTHLGTVKNPIVVKSHDPIRFVGCTG 106
>gi|225704094|gb|ACO07893.1| Cytochrome c oxidase subunit 5B, mitochondrial precursor
[Oncorhynchus mykiss]
Length = 127
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER L+A +GK+ I P GTK+ P +V DKR+VGC
Sbjct: 42 ATGLERHALQALKKGKDPWSILKPKEYAGTKEDPHIVPGISDKRLVGC 89
>gi|55926217|ref|NP_001007518.1| cytochrome c oxidase subunit 5B, mitochondrial precursor [Sus
scrofa]
gi|75042739|sp|Q5S3G4.1|COX5B_PIG RecName: Full=Cytochrome c oxidase subunit 5B, mitochondrial;
AltName: Full=Cytochrome c oxidase polypeptide Vb;
Flags: Precursor
gi|55583747|gb|AAV53387.1| mitochondrial cytochrome c oxidase subunit Vb [Sus scrofa]
Length = 129
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVMMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGC 91
>gi|197632307|gb|ACH70877.1| cytochrome c oxidase subunit vb [Salmo salar]
gi|209736030|gb|ACI68884.1| Cytochrome c oxidase subunit 5B, mitochondrial precursor [Salmo
salar]
Length = 127
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER L+A +GK+ I P GTK+ P +V DKR+VGC
Sbjct: 42 ATGLERRALQALKKGKDPWSILKPKEYAGTKEDPHIVPGISDKRLVGC 89
>gi|33339189|gb|AAQ14275.1|AF255351_1 cytochrome c oxidase subunit Vb precursor [Oncorhynchus mykiss]
Length = 127
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER L+A +GK+ I P GTK+ P +V DKR+VGC
Sbjct: 42 ATGLERRALQALKKGKDPWSILKPKEYAGTKEDPHIVPGISDKRLVGC 89
>gi|1942991|pdb|1OCC|F Chain F, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
gi|1943004|pdb|1OCC|S Chain S, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
gi|4389084|pdb|2OCC|F Chain F, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
gi|4389097|pdb|2OCC|S Chain S, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
gi|5822143|pdb|1OCO|F Chain F, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
gi|5822156|pdb|1OCO|S Chain S, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
gi|5822169|pdb|1OCR|F Chain F, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
gi|5822182|pdb|1OCR|S Chain S, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
gi|5822195|pdb|1OCZ|F Chain F, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
gi|5822208|pdb|1OCZ|S Chain S, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
gi|40889828|pdb|1V54|F Chain F, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
gi|40889841|pdb|1V54|S Chain S, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
gi|40889854|pdb|1V55|F Chain F, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
gi|40889867|pdb|1V55|S Chain S, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
gi|145579214|pdb|2DYR|F Chain F, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
gi|145579227|pdb|2DYR|S Chain S, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
gi|145579240|pdb|2DYS|F Chain F, Bovine Heart Cytochrome C Oxidase Modified By Dccd
gi|145579253|pdb|2DYS|S Chain S, Bovine Heart Cytochrome C Oxidase Modified By Dccd
gi|149241476|pdb|2EIJ|F Chain F, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
gi|149241489|pdb|2EIJ|S Chain S, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
gi|149241511|pdb|2EIK|F Chain F, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
gi|149241524|pdb|2EIK|S Chain S, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
gi|149241541|pdb|2EIL|F Chain F, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
gi|149241554|pdb|2EIL|S Chain S, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
gi|149241571|pdb|2EIM|F Chain F, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
gi|149241584|pdb|2EIM|S Chain S, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
gi|149241601|pdb|2EIN|F Chain F, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
gi|149241614|pdb|2EIN|S Chain S, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
gi|224036262|pdb|2ZXW|F Chain F, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
gi|224036275|pdb|2ZXW|S Chain S, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
gi|284055451|pdb|3ABL|F Chain F, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
gi|284055464|pdb|3ABL|S Chain S, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
gi|284055477|pdb|3ABM|F Chain F, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
gi|284055490|pdb|3ABM|S Chain S, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
gi|290789924|pdb|3ABK|F Chain F, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
gi|290789937|pdb|3ABK|S Chain S, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
gi|295321547|pdb|3AG1|F Chain F, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
gi|295321560|pdb|3AG1|S Chain S, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
gi|295321573|pdb|3AG2|F Chain F, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
gi|295321586|pdb|3AG2|S Chain S, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
gi|295321599|pdb|3AG3|F Chain F, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
gi|295321612|pdb|3AG3|S Chain S, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
gi|295321625|pdb|3AG4|F Chain F, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
gi|295321638|pdb|3AG4|S Chain S, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
gi|342350851|pdb|3ASN|F Chain F, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
gi|342350864|pdb|3ASN|S Chain S, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
gi|342350877|pdb|3ASO|F Chain F, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
gi|342350890|pdb|3ASO|S Chain S, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
gi|353251569|pdb|2YBB|Q Chain Q, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 98
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G++ I P GTK+ P +V S +KRIVGC
Sbjct: 13 ATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGC 60
>gi|384495835|gb|EIE86326.1| hypothetical protein RO3G_11037 [Rhizopus delemar RA 99-880]
Length = 148
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
+TG ER EL A LEGK + +++ GT P VVKS+ R VGC G
Sbjct: 56 STGLERMELLATLEGKQLFDMEPLNMTHLGTVKNPIVVKSHDPIRFVGCTG 106
>gi|221136987|ref|NP_001137602.1| cytochrome c oxidase polypeptide Vb [Canis lupus familiaris]
gi|219937661|emb|CAJ97445.1| cytochrome c oxidase polypeptide Vb [Canis lupus familiaris]
Length = 128
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P GTK+ P +V S +KRIVGC
Sbjct: 43 ATGLEREVMMAARKGLDPYNILAPKAAAGTKEDPNLVPSITNKRIVGC 90
>gi|75056763|sp|Q710D6.1|COX5B_VULVU RecName: Full=Cytochrome c oxidase subunit 5B, mitochondrial;
AltName: Full=Cytochrome c oxidase polypeptide Vb;
AltName: Full=Sperm protein 8; AltName: Full=fSP8;
Flags: Precursor
gi|40644927|emb|CAD19164.1| sperm protein 8 [Vulpes vulpes]
Length = 128
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P GTK+ P +V S +KRIVGC
Sbjct: 43 ATGLEREVMMAARKGLDPYNILAPKAAAGTKEDPNLVPSITNKRIVGC 90
>gi|197100745|ref|NP_001124857.1| cytochrome c oxidase subunit 5B, mitochondrial precursor [Pongo
abelii]
gi|75042504|sp|Q5REG2.1|COX5B_PONAB RecName: Full=Cytochrome c oxidase subunit 5B, mitochondrial;
AltName: Full=Cytochrome c oxidase polypeptide Vb;
Flags: Precursor
gi|55726143|emb|CAH89845.1| hypothetical protein [Pongo abelii]
Length = 129
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P G GT++ P +V S +KRIVGC
Sbjct: 44 ATGLEREIMLAAKKGLDPYNVLAPKGASGTREDPNLVPSISNKRIVGC 91
>gi|410077685|ref|XP_003956424.1| hypothetical protein KAFR_0C02960 [Kazachstania africana CBS 2517]
gi|372463008|emb|CCF57289.1| hypothetical protein KAFR_0C02960 [Kazachstania africana CBS 2517]
Length = 164
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPGGEGG 119
ATG ER EL +LEG +I + T P GT P +V SY D R VGC G G
Sbjct: 70 ATGLERLELLGKLEGIDI----FDTKPLDSSRKGTMKDPILVDSYDDYRYVGCTGSPAG 124
>gi|307108887|gb|EFN57126.1| hypothetical protein CHLNCDRAFT_57351 [Chlorella variabilis]
Length = 139
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 53 TSVKKRVEDVNPVATGHEREELEAELEG-KNILEIDYPTGPFGTKDAPAVVKSYYDKRIV 111
T K+ V + T EREELEA+ G +N + PFGT++ P VV S + +RIV
Sbjct: 36 THSKEEVAEFLEQTTVPEREELEAKAHGIENPWHEAWLDAPFGTEENPVVVPSEFAERIV 95
Query: 112 GC 113
G
Sbjct: 96 GV 97
>gi|170099123|ref|XP_001880780.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644305|gb|EDR08555.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 155
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 66 ATGHEREELEAELEGKNILEIDYP--TGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER +L ELEG ++ + D P + GTK P +V SY +R+VGC G
Sbjct: 62 ATGLERLQLLGELEGIDVFD-DSPLDSSRIGTKADPILVPSYDVERMVGCSG 112
>gi|301753180|ref|XP_002912439.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 129
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE L A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVLMAARKGLDPYNMLAPKAAAGTKEDPNLVPSITNKRIVGC 91
>gi|348571915|ref|XP_003471740.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Cavia porcellus]
Length = 129
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVMLAAQKGLDPYNILAPKAASGTKEDPNLVPSISNKRIVGC 91
>gi|440791657|gb|ELR12895.1| Cytochrome c oxidase [Acanthamoeba castellanii str. Neff]
Length = 161
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 60 EDVNPVATGHEREE---LEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
+D + TG ER E EG IL TG FGT + P +V S++ RIVGC G
Sbjct: 51 DDTDARHTGMERLEKVPWTKLYEGDAIL-----TGKFGTLEEPTIVHSWFPSRIVGCQG 104
>gi|225715742|gb|ACO13717.1| Cytochrome c oxidase subunit 5B, mitochondrial precursor [Esox
lucius]
Length = 127
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER L+A +G++ I P GTKD P +V +KR+VGC
Sbjct: 42 ATGLERRALQALKKGRDPYSILKPKQYAGTKDDPHIVPGINNKRLVGC 89
>gi|66826157|ref|XP_646433.1| cytochrome c oxidase subunit V [Dictyostelium discoideum AX4]
gi|231883|sp|P29505.3|COX5_DICDI RecName: Full=Cytochrome c oxidase subunit 5; AltName:
Full=Cytochrome c oxidase polypeptide V
gi|10926|emb|CAA39206.1| cytochrome c oxidase subunit V [Dictyostelium discoideum]
gi|60473972|gb|EAL71909.1| cytochrome c oxidase subunit V [Dictyostelium discoideum AX4]
Length = 120
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 90 TGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
TG FGT +P +V+S + RIV C GG+G
Sbjct: 53 TGAFGTLKSPVIVESIFHSRIVACEGGDG 81
>gi|410954640|ref|XP_003983971.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Felis catus]
Length = 129
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVMMAARKGLDPYNMLAPKAASGTKEDPNLVPSITNKRIVGC 91
>gi|168056234|ref|XP_001780126.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668438|gb|EDQ55045.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 288
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 65 VATGHEREELEAELEGKNILEIDYPTGPFGTK-----DAPAVVKS----YYDKRIVGCPG 115
+ATG EREELE + +GK+ + P GPFGTK AV+ S +Y ++ G G
Sbjct: 221 IATGVEREELEWKRQGKSRFYLSPPRGPFGTKVRMLFTNYAVILSGECLWYQSKVTGVGG 280
Query: 116 GEG 118
G
Sbjct: 281 QPG 283
>gi|387914584|gb|AFK10901.1| Cytochrome c oxidase subunit 5B, mitochondrial precursor
[Callorhinchus milii]
Length = 127
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG E+ ++A L+G++ + P GTK P +V S DKRIVGC
Sbjct: 42 ATGLEKIIMQAALKGQDPYNLLKPKEYAGTKADPHIVPSITDKRIVGC 89
>gi|432089126|gb|ELK23206.1| Cytochrome c oxidase subunit 5B, mitochondrial [Myotis davidii]
Length = 129
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G++ + P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVMLAARKGQDPYNMLAPKPASGTKEDPNLVPSITNKRIVGC 91
>gi|169859476|ref|XP_001836377.1| cytochrome c oxidase polypeptide IV [Coprinopsis cinerea
okayama7#130]
gi|116502550|gb|EAU85445.1| cytochrome c oxidase polypeptide IV [Coprinopsis cinerea
okayama7#130]
Length = 154
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 66 ATGHEREELEAELEGKNILEIDYP--TGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER +L ELEG N+ + D P + GTK P V SY +R++GC G
Sbjct: 62 ATGIERLQLLGELEGVNVFD-DSPLDSSRIGTKADPIKVLSYDVERMIGCTG 112
>gi|297493730|gb|ADI40587.1| cytochrome c oxidase subunit Vb [Miniopterus schreibersii]
Length = 106
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 38 ATGLEREVMMAARKGLDPYNMLAPKAASGTKEDPNLVPSITNKRIVGC 85
>gi|324528387|gb|ADY48907.1| Cytochrome c oxidase subunit 5B [Ascaris suum]
Length = 137
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 41 LFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEID-YPTGPFGTKDAP 99
LF+ R F+ ++ D ATG E++ L A L G + E Y +++ P
Sbjct: 26 LFSRRTFATEANPEDYGYYPDPLEAATGREKKMLLARLAGDDRYEPKVYYRAEVSSREKP 85
Query: 100 AVVKSYYDKRIVGC 113
+V S++D+RI+GC
Sbjct: 86 NLVPSHFDERIIGC 99
>gi|320582432|gb|EFW96649.1| Subunit IV of cytochrome c oxidase [Ogataea parapolymorpha DL-1]
Length = 154
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGG 119
ATG ER EL +LEG + E + + GT P VV SY D R VGC G G
Sbjct: 63 ATGLERLELLGKLEGVEVFENEPLDSSRKGTLADPIVVNSYDDYRYVGCTGSPAG 117
>gi|237840775|ref|XP_002369685.1| cytochrome c oxidase, putative [Toxoplasma gondii ME49]
gi|211967349|gb|EEB02545.1| cytochrome c oxidase, putative [Toxoplasma gondii ME49]
gi|221503306|gb|EEE29004.1| cytochrome C oxidase, putative [Toxoplasma gondii VEG]
Length = 310
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%)
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
S K+ D+ E E + LE L GPFGT + P + S RIVGC
Sbjct: 140 SYKQLARDMGMQIVTEETEHMVGLLELYEHLRAAAFVGPFGTVEKPVLCPSVTTDRIVGC 199
Query: 114 PGGEG 118
GG G
Sbjct: 200 TGGTG 204
>gi|95007405|emb|CAJ20625.1| cytochrome c oxidase subunit, putative [Toxoplasma gondii RH]
gi|221482902|gb|EEE21233.1| hypothetical protein TGGT1_022310 [Toxoplasma gondii GT1]
Length = 310
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%)
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
S K+ D+ E E + LE L GPFGT + P + S RIVGC
Sbjct: 140 SYKQLARDMGMQIVTEETEHMVGLLELYEHLRAAAFVGPFGTVEKPVLCPSVTTDRIVGC 199
Query: 114 PGGEG 118
GG G
Sbjct: 200 TGGTG 204
>gi|281352605|gb|EFB28189.1| hypothetical protein PANDA_000173 [Ailuropoda melanoleuca]
Length = 95
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE L A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 10 ATGLEREVLMAARKGLDPYNMLAPKAAAGTKEDPNLVPSITNKRIVGC 57
>gi|297493726|gb|ADI40585.1| cytochrome c oxidase subunit Vb [Scotophilus kuhlii]
Length = 108
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 38 ATGLEREVMLAARKGLDPYNMLAPKAASGTKEDPNLVPSITNKRIVGC 85
>gi|367010604|ref|XP_003679803.1| hypothetical protein TDEL_0B04630 [Torulaspora delbrueckii]
gi|359747461|emb|CCE90592.1| hypothetical protein TDEL_0B04630 [Torulaspora delbrueckii]
Length = 162
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL +LEG I + + GT + P VV+SY D R VGC G
Sbjct: 70 ATGLERLELLGKLEGIEIFDQKPLDSSRKGTMENPIVVESYDDYRYVGCTG 120
>gi|412988223|emb|CCO17559.1| predicted protein [Bathycoccus prasinos]
Length = 173
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 41 LFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILE-IDYPTGPFGTKDAP 99
LF +R G+ V E +TG R ELE GK+I + D+ P GTK++P
Sbjct: 65 LFRTRRRQYSRGSLVVTDFEH----STGLYRAELEGLASGKDIFDHYDFTRAPKGTKESP 120
Query: 100 AVVKSYYDKRIVGC 113
VV S + R+VG
Sbjct: 121 CVVTSEMEYRVVGV 134
>gi|410900472|ref|XP_003963720.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Takifugu rubripes]
Length = 127
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 34 RSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPF 93
R+L +RPL + K + ATG ER L+A GK+ + P
Sbjct: 18 RNLTARPLH--------RAMATLKGIPTDEEQATGLERRALQALKLGKDPYSMLKPKEYA 69
Query: 94 GTKDAPAVVKSYYDKRIVGC 113
GTK+ P +V S +KR+VGC
Sbjct: 70 GTKEDPHIVPSTVNKRLVGC 89
>gi|301756414|ref|XP_002914056.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Ailuropoda melanoleuca]
gi|281354626|gb|EFB30210.1| hypothetical protein PANDA_001895 [Ailuropoda melanoleuca]
Length = 129
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 67 TGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
TG ERE ++A +G++ I P GTK+ P +V S K+IVGC
Sbjct: 45 TGLEREVMKAAQKGRDPYNILAPKAAAGTKEDPNLVPSITKKQIVGC 91
>gi|413948651|gb|AFW81300.1| hypothetical protein ZEAMMB73_948004 [Zea mays]
Length = 94
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 1 MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRH----FSADSGTSVK 56
MWRR+ Q LA + ++ S + L + P+ A R S+
Sbjct: 1 MWRRL-------QTLAPSLRRAAASSSPASARAVPLSTVPVAAFRRTSTLLSSPGDKPAP 53
Query: 57 KRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTK 96
+VEDV P+ATG EREELEAEL+GK ++D GPFGTK
Sbjct: 54 SKVEDVMPIATGLEREELEAELQGKKRFDMDPAVGPFGTK 93
>gi|403216693|emb|CCK71189.1| hypothetical protein KNAG_0G01310 [Kazachstania naganishii CBS
8797]
Length = 161
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPGGEGG 119
ATG ER EL +LEG ++ + T P GT P +V+SY D R VGC G G
Sbjct: 69 ATGLERLELLGKLEGIDVFD----TKPLDASRTGTLADPILVESYDDYRYVGCTGSPAG 123
>gi|401396825|ref|XP_003879915.1| hypothetical protein NCLIV_003650 [Neospora caninum Liverpool]
gi|325114323|emb|CBZ49880.1| hypothetical protein NCLIV_003650 [Neospora caninum Liverpool]
Length = 336
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%)
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
S K+ D+ E E + LE L GPFGT + P + S RIVGC
Sbjct: 166 SYKQLARDMGMQIVTEETEHMVGLLELYEHLRAAAFVGPFGTIEKPVLCPSVTTDRIVGC 225
Query: 114 PGGEG 118
GG G
Sbjct: 226 TGGTG 230
>gi|224030087|gb|ACN34119.1| unknown [Zea mays]
gi|413948649|gb|AFW81298.1| hypothetical protein ZEAMMB73_948004 [Zea mays]
gi|413948650|gb|AFW81299.1| hypothetical protein ZEAMMB73_948004 [Zea mays]
Length = 245
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTK 96
+VEDV P+ATG EREELEAEL+GK ++D GPFGTK
Sbjct: 55 KVEDVMPIATGLEREELEAELQGKKRFDMDPAVGPFGTK 93
>gi|413948648|gb|AFW81297.1| hypothetical protein ZEAMMB73_948004 [Zea mays]
Length = 166
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTK 96
+VEDV P+ATG EREELEAEL+GK ++D GPFGTK
Sbjct: 55 KVEDVMPIATGLEREELEAELQGKKRFDMDPAVGPFGTK 93
>gi|221054830|ref|XP_002258554.1| PK9_2640w Cytochrome c oxidase subunit [Plasmodium knowlesi strain
H]
gi|193808623|emb|CAQ39326.1| PK9_2640w Cytochrome c oxidase subunit,putative [Plasmodium
knowlesi strain H]
Length = 278
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
S K+ D+ + E + A LE L+ GPFGT + P +V S + +R+V C
Sbjct: 111 SYKQLAVDMGMQIANPDNEHMLALLEFYEYLKSSPFVGPFGTIENPVIVPSVHTERVVCC 170
Query: 114 PGGEG 118
GG G
Sbjct: 171 TGGTG 175
>gi|389583116|dbj|GAB65852.1| cytochrome c oxidase subunit [Plasmodium cynomolgi strain B]
Length = 278
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
S K+ D+ + E + A LE L+ GPFGT + P +V S + +R+V C
Sbjct: 112 SYKQLAVDMGMQIANPDNEHMLALLEFYEYLKSSPFVGPFGTIENPVIVPSVHTERVVCC 171
Query: 114 PGGEG 118
GG G
Sbjct: 172 TGGTG 176
>gi|156097564|ref|XP_001614815.1| cytochrome c oxidase subunit [Plasmodium vivax Sal-1]
gi|148803689|gb|EDL45088.1| cytochrome c oxidase subunit, putative [Plasmodium vivax]
Length = 280
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
S K+ D+ + E + A LE L+ GPFGT + P +V S + +R+V C
Sbjct: 113 SYKQLAVDMGMQIANPDNEHMLALLEFYEYLKSSPFVGPFGTIENPVIVPSVHTERVVCC 172
Query: 114 PGGEG 118
GG G
Sbjct: 173 TGGTG 177
>gi|291386253|ref|XP_002710052.1| PREDICTED: mCG18900-like [Oryctolagus cuniculus]
Length = 129
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVMMAARKGLDPYNMLPPKAASGTKEDPNLVPSITNKRIVGC 91
>gi|385305223|gb|EIF49212.1| cytochrome c oxidase subunit iv [Dekkera bruxellensis AWRI1499]
Length = 149
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGG 119
ATG ER EL +LEG +I E T GT P ++ SY R +GC G G
Sbjct: 63 ATGLERLELLGKLEGVDIFEQKPLDTSRKGTMQNPILIDSYEKYRYIGCTGSPAG 117
>gi|33339199|gb|AAQ14280.1|AF255356_1 cytochrome c oxidase subunit Vb precursor [Scombridae gen. sp.]
Length = 126
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER L+A +GK+ I P GTK+ P +V KR+VGC
Sbjct: 41 ATGLERRTLQAFKQGKDPYSILKPKQHAGTKEDPHIVPCIGTKRLVGC 88
>gi|388857050|emb|CCF49265.1| probable COX4-cytochrome-c oxidase chain IV [Ustilago hordei]
Length = 153
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL +L+G ++ +++ GT P V+S++ RIVGC G
Sbjct: 61 ATGLERFELLGKLKGVDVFDMEPLQMTHLGTTKNPIKVQSFWPSRIVGCTG 111
>gi|321463349|gb|EFX74365.1| hypothetical protein DAPPUDRAFT_231281 [Daphnia pulex]
Length = 120
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 35 SLISRPLFAS--RHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGK-NILEIDYPTG 91
SL+ R +FA+ R S + + + + D ATG E+ E+ A+ G+ + E+
Sbjct: 3 SLVCRSVFAATRRGVSTTAVRAADRAMNDPVEHATGLEKREILAKQAGREDPYEMQVYKR 62
Query: 92 PFGTKDAPAVVKSYYDKRIVGC 113
GTK+ P VV S D R+VGC
Sbjct: 63 VAGTKEKPNVVPSVADYRVVGC 84
>gi|327285498|ref|XP_003227470.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Anolis carolinensis]
Length = 120
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER+ ++A +G + + P GTK+ P +V S DKRIVGC
Sbjct: 36 ATGLERKVMKALQQGLDPYSMFPPKPRAGTKEDPNIVPSITDKRIVGC 83
>gi|431913042|gb|ELK14792.1| Cytochrome c oxidase subunit 5B, mitochondrial [Pteropus alecto]
Length = 129
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVMMAARKGLDPYNMLAPKPASGTKEDPNLVPSITNKRIVGC 91
>gi|365983424|ref|XP_003668545.1| hypothetical protein NDAI_0B02670 [Naumovozyma dairenensis CBS 421]
gi|343767312|emb|CCD23302.1| hypothetical protein NDAI_0B02670 [Naumovozyma dairenensis CBS 421]
Length = 169
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPGGEGG 119
ATG ER EL +LEG + T P GT P ++ SY D R VGC G G
Sbjct: 77 ATGLERLELLGKLEGIEFFD----TKPLDASRKGTMKDPIIINSYDDYRYVGCTGSPAG 131
>gi|297493728|gb|ADI40586.1| cytochrome c oxidase subunit Vb [Cynopterus sphinx]
Length = 113
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 43 ATGLEREVMMAARKGLDPYNMLAPKPASGTKEDPNLVPSISNKRIVGC 90
>gi|303288608|ref|XP_003063592.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454660|gb|EEH51965.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 146
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 66 ATGHEREELEAELEGKNILE-IDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG E EL+A EGK+ + D+ P GT++ P VKS RIVG
Sbjct: 61 ATGLELRELQAAAEGKDFFDHYDFLQAPNGTEEKPVEVKSSMPYRIVGA 109
>gi|297493724|gb|ADI40584.1| cytochrome c oxidase subunit Vb [Rousettus leschenaultii]
Length = 105
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 37 ATGLEREVMMAARKGLDPYNMLAPKPASGTKEDPNLVPSISNKRIVGC 84
>gi|62858943|ref|NP_001016250.1| cytochrome c oxidase subunit Vb, gene 1 [Xenopus (Silurana)
tropicalis]
gi|89267432|emb|CAJ83989.1| Novel protein similar to cytochrome c oxidase subunit Vb [Xenopus
(Silurana) tropicalis]
gi|195539862|gb|AAI68140.1| hypothetical protein LOC549004 [Xenopus (Silurana) tropicalis]
gi|213625452|gb|AAI70641.1| hypothetical protein LOC549004 [Xenopus (Silurana) tropicalis]
gi|213625454|gb|AAI70645.1| hypothetical protein LOC549004 [Xenopus (Silurana) tropicalis]
Length = 126
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG E++ + A +G + I+ P GTK+ P +V S +KRIVGC
Sbjct: 41 ATGLEKKVMAAIKKGTDPYSIEKPQQYAGTKEDPHIVPSITNKRIVGC 88
>gi|348507115|ref|XP_003441102.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Oreochromis niloticus]
Length = 127
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER L+A +GK+ I P GTK+ P +V KR+VGC
Sbjct: 42 ATGLERRTLQALKQGKDPYSILKPKHYAGTKEDPHIVPGIGTKRLVGC 89
>gi|427798723|gb|JAA64813.1| Putative cytochrome c oxidase polypeptide vb, partial
[Rhipicephalus pulchellus]
Length = 155
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 66 ATGHEREELEAELEGKNI---LEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER+EL A G + +++ + GP GTKD P ++ S+ +KR++GC
Sbjct: 74 ATGRERQELLAMAAGNDDPFDMKV-FKRGP-GTKDNPNLIPSHLEKRMIGC 122
>gi|255714967|ref|XP_002553765.1| KLTH0E06578p [Lachancea thermotolerans]
gi|238935147|emb|CAR23328.1| KLTH0E06578p [Lachancea thermotolerans CBS 6340]
Length = 155
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG R EL +LEG ++ + + GT + P +V +Y D R VGC G
Sbjct: 62 ATGLARLELLGKLEGIDVFDTKPLDSSRIGTMENPIIVDTYDDYRYVGCTG 112
>gi|117104|sp|P19536.1|COX5B_MOUSE RecName: Full=Cytochrome c oxidase subunit 5B, mitochondrial;
AltName: Full=Cytochrome c oxidase polypeptide Vb;
Flags: Precursor
gi|50531|emb|CAA37313.1| unnamed protein product [Mus musculus]
gi|192924|gb|AAA37515.1| cytochrome c oxidase subunit Vb [Mus musculus]
Length = 128
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 43 ATGLEREIMIAAQKGLDPYNMLPPKAASGTKEDPNLVPSISNKRIVGC 90
>gi|426199398|gb|EKV49323.1| COX5B subunit VB of cytochrome c oxidase [Agaricus bisporus var.
bisporus H97]
Length = 153
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPG 115
+TG ER +L E+EG N+ E GP GT+ P V SY +RI+GC G
Sbjct: 61 STGLERLQLLGEIEGINVFE----EGPLDSSRIGTRADPVRVPSYDVERIIGCTG 111
>gi|409078406|gb|EKM78769.1| COX5B subunit VB of cytochrome c oxidase [Agaricus bisporus var.
burnettii JB137-S8]
Length = 153
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPG 115
+TG ER +L E+EG N+ E GP GT+ P V SY +RI+GC G
Sbjct: 61 STGLERLQLLGEIEGINVFE----EGPLDSSRIGTRADPVRVPSYDVERIIGCTG 111
>gi|112807195|ref|NP_034072.2| cytochrome c oxidase subunit 5B, mitochondrial [Mus musculus]
gi|149263037|ref|XP_001475467.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like [Mus
musculus]
gi|12842467|dbj|BAB25614.1| unnamed protein product [Mus musculus]
gi|66365720|gb|AAH96048.1| Cytochrome c oxidase, subunit Vb [Mus musculus]
gi|71051226|gb|AAH99474.1| Cytochrome c oxidase, subunit Vb [Mus musculus]
gi|74152883|dbj|BAE22451.1| unnamed protein product [Mus musculus]
gi|74199859|dbj|BAE20757.1| unnamed protein product [Mus musculus]
gi|148682556|gb|EDL14503.1| mCG17741, isoform CRA_d [Mus musculus]
gi|148700700|gb|EDL32647.1| mCG23026 [Mus musculus]
Length = 129
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREIMIAAQKGLDPYNMLPPKAASGTKEDPNLVPSISNKRIVGC 91
>gi|148705042|gb|EDL36989.1| mCG18900 [Mus musculus]
Length = 145
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 60 ATGLEREIMIAAQKGLDPYNMLPPKAASGTKEDPNLVPSISNKRIVGC 107
>gi|354472222|ref|XP_003498339.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Cricetulus griseus]
gi|344250345|gb|EGW06449.1| Cytochrome c oxidase subunit 5B, mitochondrial [Cricetulus griseus]
Length = 129
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 42 FASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAV 101
A+R F++ G + ATG ERE + A +G + + P GTK+ P +
Sbjct: 26 VATRSFASGGGVPTDEEQ------ATGLEREIMIAAEKGLDPYNMLPPKAASGTKEDPNL 79
Query: 102 VKSYYDKRIVGC 113
V S +KRIVGC
Sbjct: 80 VPSITNKRIVGC 91
>gi|68075443|ref|XP_679640.1| cytochrome c oxidase subunit [Plasmodium berghei strain ANKA]
gi|56500434|emb|CAI04795.1| cytochrome c oxidase subunit, putative [Plasmodium berghei]
Length = 274
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
S K+ D+ + E + A LE L+ GPFGT + P +V S + +R+V C
Sbjct: 104 SYKQLAIDLGMQIANPDNEHMLALLEFYEYLKSSPFVGPFGTIENPVIVPSVHTERVVCC 163
Query: 114 PGGEG 118
GG G
Sbjct: 164 TGGTG 168
>gi|406607156|emb|CCH41417.1| Cytochrome c oxidase polypeptide 4,mitochondrial [Wickerhamomyces
ciferrii]
Length = 157
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL +LEG + + T P GT P +V+SY D R VGC G
Sbjct: 66 ATGLERLELLGKLEGIEVFD----TKPLDSSRRGTMADPILVESYDDYRYVGCTG 116
>gi|473729|dbj|BAA01743.1| cytochrome c oxidase subunit Vb [Rattus norvegicus]
Length = 129
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A G + + P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREIMIAAQRGLDPYNMLPPKAASGTKEDPNLVPSVSNKRIVGC 91
>gi|70943284|ref|XP_741707.1| cytochrome c oxidase subunit [Plasmodium chabaudi chabaudi]
gi|56520256|emb|CAH84072.1| cytochrome c oxidase subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 269
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
S K+ D+ + E + A LE L+ GPFGT + P +V S + +R+V C
Sbjct: 107 SYKQLAIDLGMQIANPDNEHMLALLEFYEYLKSSPFVGPFGTIENPVIVPSVHTERVVCC 166
Query: 114 PGGEG 118
GG G
Sbjct: 167 TGGTG 171
>gi|440895880|gb|ELR47955.1| hypothetical protein M91_12035, partial [Bos grunniens mutus]
Length = 120
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 31 IASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYP 89
+AS++L +R P S S SG SV E ATG ERE + A +G++ I P
Sbjct: 2 LASQALRARGPNGVSVVRSMASGGSVPTDEEQ----ATGLEREVMLAARKGQDPYNILAP 57
Query: 90 TGPFGTKDAPAV-VKSYYDKRIVGC 113
GTK+ P V V S +KR VGC
Sbjct: 58 KATSGTKEDPNVPVPSITNKRTVGC 82
>gi|1352168|sp|P80499.1|COX5B_SOLTU RecName: Full=Cytochrome c oxidase subunit 5B, mitochondrial;
AltName: Full=Cytochrome c oxidase polypeptide Vb
Length = 28
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 54 SVKKRVEDVNPVATGHEREELEAE 77
+V K+VEDV P+ATGHERE L A+
Sbjct: 5 NVVKKVEDVMPIATGHEREXLXAQ 28
>gi|340371602|ref|XP_003384334.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Amphimedon queenslandica]
Length = 139
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 68 GHEREELEAELEG-KNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
G E++E++A ++G ++ ++ GP GTK+ P +V S +RIVGC
Sbjct: 53 GIEKKEIDALMDGVEDPFNLNINRGPRGTKERPTLVPSLLGERIVGC 99
>gi|16758362|ref|NP_446038.1| cytochrome c oxidase subunit 5B, mitochondrial precursor [Rattus
norvegicus]
gi|1352167|sp|P12075.2|COX5B_RAT RecName: Full=Cytochrome c oxidase subunit 5B, mitochondrial;
AltName: Full=Cytochrome c oxidase polypeptide Vb;
AltName: Full=Cytochrome c oxidase subunit VIA*; Flags:
Precursor
gi|493695|dbj|BAA01744.1| cytochrome c oxidase subunit Vb [Rattus norvegicus]
gi|53237117|gb|AAH83179.1| Cytochrome c oxidase subunit Vb [Rattus norvegicus]
gi|149046369|gb|EDL99262.1| cytochrome c oxidase subunit Vb, isoform CRA_c [Rattus norvegicus]
Length = 129
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A G + + P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREIMIAAQRGLDPYNMLPPKAASGTKEDPNLVPSVSNKRIVGC 91
>gi|452983843|gb|EME83601.1| hypothetical protein MYCFIDRAFT_89362 [Pseudocercospora fijiensis
CIRAD86]
Length = 194
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEI-DYPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER E+ +++G +I ++ GT + P VVKSY D++ VGC G
Sbjct: 73 ATGIERLEILGKMQGIDIFDMRPLDASRKGTLEDPIVVKSYGDEQYVGCTG 123
>gi|344228896|gb|EGV60782.1| cytochrome c oxidase polypeptide IV mitochondrial precursor
[Candida tenuis ATCC 10573]
gi|344228897|gb|EGV60783.1| hypothetical protein CANTEDRAFT_116847 [Candida tenuis ATCC 10573]
Length = 158
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF---GTKDAPAVVKSYYDKRIVGCPGGEG 118
+TG ER EL ++EG ++ +++ P F GT P +V +Y R VGC G +G
Sbjct: 67 STGAERFELLGKMEGVDVFDMENPI--FEGSGTMQDPYLVPTYVGYRYVGCMGKKG 120
>gi|260908469|gb|ACX53954.1| cytochrome c oxidase polypeptide Vb [Rhipicephalus sanguineus]
Length = 125
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 66 ATGHEREELEAELEGKNI---LEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER+EL A G + +++ + GP GTKD P ++ S+ +KR++GC
Sbjct: 41 ATGRERQELLAMAAGNDDPFDMKV-FKRGP-GTKDNPNLIPSHLEKRMIGC 89
>gi|354546398|emb|CCE43128.1| hypothetical protein CPAR2_207710 [Candida parapsilosis]
Length = 154
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEIDYP-TGPFGTKDAPAVVKSYYDKRIVGCPG 115
+TG +R EL + EG ++ +++ P T GT D P +V +Y R VGC G
Sbjct: 64 STGLQRLELLGKREGVDVFDMEMPITEGKGTMDDPFLVPTYIGYRYVGCKG 114
>gi|55992|emb|CAA32425.1| cytochrome c oxidase subunit VIa (AA 1 - 118) [Rattus norvegicus]
Length = 117
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A G + + P GTK+ P +V S +KRIVGC
Sbjct: 32 ATGLEREIMIAAQRGLDPYNMLPPKAASGTKEDPNLVPSVSNKRIVGC 79
>gi|328352221|emb|CCA38620.1| cytochrome c oxidase subunit Vb [Komagataella pastoris CBS 7435]
Length = 311
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF--GTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL +LEG + + + P GT P ++ SY D R VGC G
Sbjct: 220 ATGLERYELLGKLEGIEVFD-ETPLEAVRKGTMKDPILIDSYDDYRYVGCTG 270
>gi|254586497|ref|XP_002498816.1| ZYRO0G19206p [Zygosaccharomyces rouxii]
gi|238941710|emb|CAR29883.1| ZYRO0G19206p [Zygosaccharomyces rouxii]
Length = 155
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL +LEG + T P GT P V++SY D R VGC G
Sbjct: 63 ATGLERLELLGKLEGVEFFD----TKPLDSSRKGTMADPIVLESYEDYRYVGCTG 113
>gi|402224940|gb|EJU05002.1| COX5B-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 169
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPG 115
ATG ER +L E+EG ++ + GP GT P +V+ D+RIVGC G
Sbjct: 67 ATGLERLQLLGEIEGIDVFD----QGPLEVNRLGTLADPIMVECLADERIVGCTG 117
>gi|126303451|ref|XP_001379873.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Monodelphis domestica]
Length = 128
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A + + P GTK+ P +V S DKRIVGC
Sbjct: 43 ATGLEREIMLAARNDLDPYNMLAPKAAPGTKEEPNLVPSITDKRIVGC 90
>gi|157423509|gb|AAI53400.1| Zgc:153978 protein [Danio rerio]
Length = 143
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
A G ER L+A +G++ I P GT++ P +V S +KR+VGC
Sbjct: 41 AAGLERRVLQAMKKGQDPYSILRPKQYTGTREDPHIVPSINNKRLVGC 88
>gi|367003896|ref|XP_003686681.1| hypothetical protein TPHA_0H00370 [Tetrapisispora phaffii CBS 4417]
gi|357524983|emb|CCE64247.1| hypothetical protein TPHA_0H00370 [Tetrapisispora phaffii CBS 4417]
Length = 158
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGG 119
ATG R EL +LEG ++ + + GT P +V SY D R VGC G G
Sbjct: 65 ATGLARLELLGKLEGVDVFDSKPLESSRTGTMADPIIVNSYDDYRYVGCTGSPAG 119
>gi|124507103|ref|XP_001352148.1| cytochrome c oxidase subunit, putative [Plasmodium falciparum 3D7]
gi|23505178|emb|CAD51959.1| cytochrome c oxidase subunit, putative [Plasmodium falciparum 3D7]
Length = 273
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
S K+ D+ + E + A LE L+ GPFGT + P +V S + +R+V C
Sbjct: 114 SYKQLAIDMGMQIANSDNEHMLALLEYYEYLKSSPFVGPFGTIENPVLVPSVHVERVVCC 173
Query: 114 PGGEG 118
GG G
Sbjct: 174 TGGTG 178
>gi|113679439|ref|NP_001038822.1| cytochrome c oxidase subunit Vb 2 [Danio rerio]
gi|112418752|gb|AAI22443.1| Zgc:153978 [Danio rerio]
gi|182890820|gb|AAI65491.1| Zgc:153978 protein [Danio rerio]
Length = 126
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
A G ER L+A +G++ I P GT++ P +V S +KR+VGC
Sbjct: 41 AAGLERRVLQAMKKGQDPYSILRPKQYTGTREDPHIVPSINNKRLVGC 88
>gi|195657347|gb|ACG48141.1| cytochrome c oxidase polypeptide Vb [Zea mays]
Length = 106
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 30/39 (76%)
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTK 96
+VEDV P+ATG EREELEAEL+GK ++D PFGTK
Sbjct: 55 KVEDVMPIATGLEREELEAELQGKKRFDMDPAVSPFGTK 93
>gi|429327174|gb|AFZ78934.1| cytochrome C oxidase, putative [Babesia equi]
Length = 311
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 90 TGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
GPFGT P +V S +RIVGC GG G
Sbjct: 165 VGPFGTVKNPVLVPSVLTERIVGCTGGAG 193
>gi|391334995|ref|XP_003741883.1| PREDICTED: uncharacterized protein K02A2.6-like, partial
[Metaseiulus occidentalis]
Length = 890
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 73 ELEAELEGKNILEIDYPTG-------PFGTKDAPAVVKSYYDKRIVGCPG 115
++E + +N++ I+ P G PFG K AP++ + D+ +VG PG
Sbjct: 577 QIEVHPDDRNLITINTPKGLFEMTRLPFGLKTAPSLFQRIMDETLVGIPG 626
>gi|395507010|ref|XP_003757821.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Sarcophilus harrisii]
Length = 212
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A + + P GT++ P +V S DKRIVGC
Sbjct: 127 ATGLEREIMMAARNDLDPYNMYAPKAAPGTQEEPNLVPSITDKRIVGC 174
>gi|401625816|gb|EJS43806.1| cox4p [Saccharomyces arboricola H-6]
Length = 155
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 67 TGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPGGEGG 119
TG R EL +LEG ++ + T P GT P +++SY D R VGC G G
Sbjct: 64 TGLARLELLGKLEGIDVFD----TKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAG 117
>gi|332373650|gb|AEE61966.1| unknown [Dendroctonus ponderosae]
Length = 121
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 43 ASRH-FSADSGTSVKKRVEDVNPVATGHEREELEAELEGK-NILEIDYPTGPFGTKDAPA 100
A RH FS+ S K + D ATG E+ E+ A+L G N ++ G+K P
Sbjct: 13 ARRHIFSSSIRCSSKVTLGDPVEHATGLEKREILAKLAGNDNPFDMRVIKRGVGSKAQPT 72
Query: 101 VVKSYYDKRIVGC 113
+ S +D R+VGC
Sbjct: 73 PIPSAFDSRLVGC 85
>gi|444319170|ref|XP_004180242.1| hypothetical protein TBLA_0D02180 [Tetrapisispora blattae CBS 6284]
gi|387513284|emb|CCH60723.1| hypothetical protein TBLA_0D02180 [Tetrapisispora blattae CBS 6284]
Length = 177
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGG 119
ATG ER EL ++EG + GT P +V SY + R VGC G G
Sbjct: 85 ATGMERLELMGKMEGVEFFDTKPLQANRIGTMADPIIVDSYDEYRYVGCSGCPAG 139
>gi|346469885|gb|AEO34787.1| hypothetical protein [Amblyomma maculatum]
Length = 167
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 66 ATGHEREELEAELEGKNILEID---YPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG E++EL A G N D + GP GTKD P ++ S+ +KR++GC
Sbjct: 83 ATGREKQELLAHAAG-NDDPFDMKVFKRGP-GTKDNPNLIPSHLEKRMIGC 131
>gi|84995874|ref|XP_952659.1| cytochrome c oxidase subunit [Theileria annulata strain Ankara]
gi|65302820|emb|CAI74927.1| cytochrome c oxidase subunit, putative [Theileria annulata]
Length = 270
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 90 TGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
GPFGT P +V S +R+VGC GG G
Sbjct: 124 VGPFGTIQNPVLVPSVMTERVVGCTGGSG 152
>gi|17506881|ref|NP_492601.1| Protein CCO-1 [Caenorhabditis elegans]
gi|3876417|emb|CAB03002.1| Protein CCO-1 [Caenorhabditis elegans]
Length = 132
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 33 SRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEID-YPTG 91
S+ L++ A R + ++ D ATG E++ L A L G + E Y
Sbjct: 13 SKKLVAPAAVARRTLATEASPEDYGYYPDPLEHATGREKKMLLARLAGDDRYEPKVYYRA 72
Query: 92 PFGTKDAPAVVKSYYDKRIVGC 113
TK P +V S+YD RI+GC
Sbjct: 73 EASTKQKPNLVPSHYDFRIIGC 94
>gi|268564819|ref|XP_002639238.1| C. briggsae CBR-CCO-1 protein [Caenorhabditis briggsae]
Length = 132
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 33 SRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEID-YPTG 91
S+ L++ A R + ++ D ATG E++ L A L G + E Y
Sbjct: 13 SKKLVAPAAVARRTLATEASPEDYGYYPDPLEHATGREKKMLLARLAGDDRYEPKVYYRA 72
Query: 92 PFGTKDAPAVVKSYYDKRIVGC 113
TK P +V S+YD RI+GC
Sbjct: 73 EASTKQKPNLVPSHYDFRIIGC 94
>gi|406867431|gb|EKD20469.1| subunit IV of cytochrome c oxidase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 191
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER E+ +++G +I ++ GT D P +VKS+ D++ GC G
Sbjct: 75 ATGLERLEILGKMQGIDIFDMKPLDASRLGTLDNPIMVKSFGDEQYAGCTG 125
>gi|156089621|ref|XP_001612217.1| cytochrome c oxidase subunit Vb [Babesia bovis T2Bo]
gi|154799471|gb|EDO08649.1| cytochrome c oxidase subunit Vb, putative [Babesia bovis]
Length = 275
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 90 TGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
GPFGT P +V S +RIVGC GG G
Sbjct: 128 VGPFGTIKNPVLVPSILTERIVGCTGGAG 156
>gi|256269378|gb|EEU04676.1| Cox4p [Saccharomyces cerevisiae JAY291]
Length = 155
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 67 TGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPGGEGG 119
TG R EL +LEG ++ + T P GT P +++SY D R VGC G G
Sbjct: 64 TGLARLELLGKLEGIDVFD----TKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAG 117
>gi|194761486|ref|XP_001962960.1| GF14170 [Drosophila ananassae]
gi|190616657|gb|EDV32181.1| GF14170 [Drosophila ananassae]
Length = 120
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 43 ASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGK-NILEIDYPTGPFGTKDAPAV 101
A+R A + K + D ATG E+ EL A+ G N ++ GTK+ P +
Sbjct: 13 AARQNVAYTPVRFCKMMNDPLEHATGIEKRELLAKAAGNDNPFDMKVFKRGAGTKENPNL 72
Query: 102 VKSYYDKRIVGC 113
+ S +D RIVGC
Sbjct: 73 IPSAFDARIVGC 84
>gi|6321251|ref|NP_011328.1| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae S288c]
gi|117090|sp|P04037.1|COX4_YEAST RecName: Full=Cytochrome c oxidase subunit 4, mitochondrial;
AltName: Full=Cytochrome c oxidase polypeptide IV;
Flags: Precursor
gi|3582|emb|CAA25665.1| cytochrome c oxidase subunit IV precursor [Saccharomyces
cerevisiae]
gi|1143560|emb|CAA62787.1| cytochrome C oxidase chain IV precursor [Saccharomyces cerevisiae]
gi|1322805|emb|CAA96899.1| COX4 [Saccharomyces cerevisiae]
gi|151943629|gb|EDN61939.1| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae YJM789]
gi|190407127|gb|EDV10394.1| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae RM11-1a]
gi|259146324|emb|CAY79581.1| Cox4p [Saccharomyces cerevisiae EC1118]
gi|285812028|tpg|DAA07928.1| TPA: cytochrome c oxidase subunit IV [Saccharomyces cerevisiae
S288c]
gi|323304962|gb|EGA58716.1| Cox4p [Saccharomyces cerevisiae FostersB]
gi|323333622|gb|EGA75015.1| Cox4p [Saccharomyces cerevisiae AWRI796]
gi|323337533|gb|EGA78778.1| Cox4p [Saccharomyces cerevisiae Vin13]
gi|323348678|gb|EGA82920.1| Cox4p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355048|gb|EGA86878.1| Cox4p [Saccharomyces cerevisiae VL3]
gi|349578046|dbj|GAA23212.1| K7_Cox4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765765|gb|EHN07271.1| Cox4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299563|gb|EIW10657.1| Cox4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 155
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 67 TGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPGGEGG 119
TG R EL +LEG ++ + T P GT P +++SY D R VGC G G
Sbjct: 64 TGLARLELLGKLEGIDVFD----TKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAG 117
>gi|387015412|gb|AFJ49825.1| Cytochrome c oxidase subunit Vb, gene 1 [Crotalus adamanteus]
Length = 125
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFG-TKDAPAVVKSYYDKRIVGC 113
ATG ER+ ++ +G++ + YP+ P+G TKD P +V S + R+VGC
Sbjct: 41 ATGMERKIMDTIKKGEDPYGV-YPSKPYGGTKDDPHLVPSLTNVRLVGC 88
>gi|260908508|gb|ACX53973.1| cytochrome c oxidase polypeptide Vb [Rhipicephalus sanguineus]
Length = 125
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 66 ATGHEREELEAELEGKNI---LEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG E++EL A G + +++ + GP GTKD P ++ S+ +KR++GC
Sbjct: 41 ATGREKQELLAHAAGNDDPFDMKV-FKRGP-GTKDNPNLIPSHLEKRMIGC 89
>gi|91086119|ref|XP_968221.1| PREDICTED: similar to AGAP008724-PA [Tribolium castaneum]
gi|270011057|gb|EFA07505.1| hypothetical protein TcasGA2_TC009596 [Tribolium castaneum]
Length = 121
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 66 ATGHEREELEAELEG-KNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG E+ EL A++ G +N ++ GTKD P + S +D R+VGC
Sbjct: 37 ATGLEKRELMAKVAGNENPFDLKVIKRGPGTKDKPNEIPSAFDARLVGC 85
>gi|58386537|ref|XP_314835.2| AGAP008724-PA [Anopheles gambiae str. PEST]
gi|55239920|gb|EAA10211.2| AGAP008724-PA [Anopheles gambiae str. PEST]
Length = 119
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 57 KRVEDVNPVATGHEREELEAELEGKNILEID---YPTGPFGTKDAPAVVKSYYDKRIVGC 113
K + D ATG E+ EL A+ G N D + GP GTKD+P ++ S +D R+VGC
Sbjct: 26 KMMNDPIEHATGIEKRELLAKQAG-NPDPFDMRVFKRGP-GTKDSPNLIPSAFDARLVGC 83
>gi|401839296|gb|EJT42579.1| COX4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 155
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 67 TGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPGGEGG 119
TG R EL +LEG ++ + T P GT P +++SY D R VGC G G
Sbjct: 64 TGLARLELLGKLEGIDVFD----TKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAG 117
>gi|71029944|ref|XP_764614.1| cytochrome c oxidase subunit [Theileria parva strain Muguga]
gi|68351570|gb|EAN32331.1| cytochrome c oxidase subunit, putative [Theileria parva]
Length = 270
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 90 TGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
GPFGT P +V S +R+VGC GG G
Sbjct: 124 VGPFGTIQNPVLVPSVMTERVVGCTGGSG 152
>gi|154310538|ref|XP_001554600.1| subunit IV of cytochrome c oxidase [Botryotinia fuckeliana B05.10]
gi|347839500|emb|CCD54072.1| similar to cytochrome c oxidase polypeptide IV [Botryotinia
fuckeliana]
Length = 193
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER E+ +++G +I ++ GT D P +VKS+ D++ GC G
Sbjct: 73 ATGLERLEILGKMQGVDIFDMKPLDASRKGTLDNPIIVKSFGDEQYAGCTG 123
>gi|308494136|ref|XP_003109257.1| CRE-CCO-1 protein [Caenorhabditis remanei]
gi|308246670|gb|EFO90622.1| CRE-CCO-1 protein [Caenorhabditis remanei]
gi|341886835|gb|EGT42770.1| hypothetical protein CAEBREN_12755 [Caenorhabditis brenneri]
gi|341898165|gb|EGT54100.1| CBN-CCO-1 protein [Caenorhabditis brenneri]
Length = 132
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 33 SRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEID-YPTG 91
S+ L++ A R + ++ D ATG E++ L A L G + E Y
Sbjct: 13 SKRLVAPAAVARRTMATEASPEDYGYYPDPLEHATGREKKMLLARLAGDDRYEPKVYYRA 72
Query: 92 PFGTKDAPAVVKSYYDKRIVGC 113
TK P +V S+YD RI+GC
Sbjct: 73 EASTKQKPNLVPSHYDFRIIGC 94
>gi|302685301|ref|XP_003032331.1| hypothetical protein SCHCODRAFT_68145 [Schizophyllum commune H4-8]
gi|300106024|gb|EFI97428.1| hypothetical protein SCHCODRAFT_68145 [Schizophyllum commune H4-8]
Length = 161
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 66 ATGHEREELEAELEGKNILEIDYP--TGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL +L+G + + D P + GTK P V S+ R++GC G
Sbjct: 55 ATGLERLELLGDLQGIKVFD-DSPLDSSRIGTKKDPIRVPSFDHDRVIGCTG 105
>gi|193620134|ref|XP_001950954.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
isoform 1 [Acyrthosiphon pisum]
Length = 128
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 30 SIASRSLISRPLFASRHFSADSGTSVKKRVE---DVNPVATGHEREELEAELEGKNI-LE 85
+++S+ + P SR FSA + K E D +ATG E++E+ L G +
Sbjct: 7 ALSSKIIFRNP---SRMFSASNAKFTKVNDEGFPDPLDLATGIEKKEMLLRLAGNDDPYN 63
Query: 86 IDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
+ GT D P +V S ++ RI+GC
Sbjct: 64 LKAIKRGVGTSDKPTLVPSAFEARIIGC 91
>gi|125825023|ref|XP_001342184.1| PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like
[Danio rerio]
Length = 127
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ER +EA +G + I P G+K P +V S KRIVGC
Sbjct: 42 ATGLERIVMEASKKGLDPYNILKPKEYAGSKQDPHIVPSISTKRIVGC 89
>gi|50412797|ref|XP_457165.1| DEHA2B04664p [Debaryomyces hansenii CBS767]
gi|49652830|emb|CAG85159.1| DEHA2B04664p [Debaryomyces hansenii CBS767]
Length = 155
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 66 ATGHEREELEAELEGKNILEIDYPT--GPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
ATG ER EL ++EG ++ +++ P G KD P +V +Y R VGC G G
Sbjct: 64 ATGLERFELLGKMEGIDVFDMENPIFEGSGSMKD-PYLVPTYMGYRYVGCMGKGG 117
>gi|254568302|ref|XP_002491261.1| Subunit IV of cytochrome c oxidase [Komagataella pastoris GS115]
gi|238031058|emb|CAY68981.1| Subunit IV of cytochrome c oxidase [Komagataella pastoris GS115]
Length = 161
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNIL-EIDYPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL +LEG + E GT P ++ SY D R VGC G
Sbjct: 70 ATGLERYELLGKLEGIEVFDETPLEAVRKGTMKDPILIDSYDDYRYVGCTG 120
>gi|295661390|ref|XP_002791250.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|50428890|gb|AAT77150.1| putative cytochrome c oxidase subunit IV [Paracoccidioides
brasiliensis]
gi|226280812|gb|EEH36378.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 197
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEI-DYPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL ++ G +I ++ + GT D P +VKS D++ GC G
Sbjct: 79 ATGLERLELLGKMNGVDIFDMRPLDSSRLGTLDNPIIVKSGGDEQYAGCTG 129
>gi|361130793|gb|EHL02530.1| putative Cytochrome c oxidase subunit 4, mitochondrial [Glarea
lozoyensis 74030]
Length = 138
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER E+ +++G +I ++ GT D P +VKS+ D++ GC G
Sbjct: 34 ATGLERLEILGKMQGVDIFDMKPLDASRKGTLDNPIIVKSFGDEQYAGCTG 84
>gi|125987063|ref|XP_001357294.1| GA10709 [Drosophila pseudoobscura pseudoobscura]
gi|195156141|ref|XP_002018959.1| GL25676 [Drosophila persimilis]
gi|198477059|ref|XP_002136780.1| GA28177 [Drosophila pseudoobscura pseudoobscura]
gi|54645625|gb|EAL34363.1| GA10709 [Drosophila pseudoobscura pseudoobscura]
gi|194115112|gb|EDW37155.1| GL25676 [Drosophila persimilis]
gi|198145099|gb|EDY71803.1| GA28177 [Drosophila pseudoobscura pseudoobscura]
Length = 120
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 57 KRVEDVNPVATGHEREELEAELEG-KNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
K + D ATG E+ EL A+ G +N ++ GTK+ P ++ S +D RIVGC
Sbjct: 27 KMMNDPLEHATGIEKRELLAKAAGNENPFDMKVFKRGAGTKENPNLIPSAFDARIVGC 84
>gi|398830678|ref|ZP_10588859.1| putative secreted protein [Phyllobacterium sp. YR531]
gi|398213258|gb|EJM99851.1| putative secreted protein [Phyllobacterium sp. YR531]
Length = 284
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 46 HFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSY 105
H + T +++R+ D+ +G + E KN L ID +GP T V+ +
Sbjct: 146 HVNGQDETKIRRRIADMRDTPSGLT-VPVSIEKASKNRLLIDIGSGPVTTNPVRVVLAYF 204
Query: 106 YDKRIVGCPGGE 117
+ IV PGGE
Sbjct: 205 NRESIVSIPGGE 216
>gi|308322119|gb|ADO28197.1| mitochondrial cytochrome c oxidase subunit 5b [Ictalurus furcatus]
gi|308323261|gb|ADO28767.1| mitochondrial cytochrome c oxidase subunit 5b [Ictalurus punctatus]
Length = 125
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG E++ L++ G + + P G+KD P +V S +KRIVGC
Sbjct: 40 ATGLEKKILKSFKAGADPYSVLKPKQYAGSKDDPHIVPSINNKRIVGC 87
>gi|410446425|gb|AFV69126.1| mitochondrial cytochrome c oxidase subunit Vb [Litopenaeus
vannamei]
Length = 121
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 30 SIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEG-KNILEIDY 88
S+ +RSL+ L + R S K + D ATG E++EL ++ G +N ++
Sbjct: 3 SLIARSLV---LNSRRGVQLTSVRFANKMMADPMEHATGLEKQELLSKAAGNENPFDMRV 59
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
G + P V S+Y++R+VGC
Sbjct: 60 YKRVSGDQTNPTSVPSFYERRLVGC 84
>gi|403221627|dbj|BAM39759.1| cytochrome Coxidase subunit [Theileria orientalis strain Shintoku]
Length = 225
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 90 TGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
GPFGT P +V S +R+VGC GG G
Sbjct: 79 VGPFGTIKNPVLVPSVMTERVVGCTGGSG 107
>gi|226292893|gb|EEH48313.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 313
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 66 ATGHEREELEAELEGKNILEI-DYPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER EL ++ G ++ ++ + GT D P +VKS D++ GC G
Sbjct: 195 ATGLERLELLGKMHGVDVFDMRPLDSSRLGTLDNPIIVKSGGDEQYAGCTG 245
>gi|307196207|gb|EFN77864.1| Cytochrome c oxidase subunit 5B, mitochondrial [Harpegnathos
saltator]
Length = 119
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 51 SGTSVKKRVEDVNPVATGHEREELEAELEGKNI-LEIDYPTGPFGTKDAPAVVKSYYDKR 109
S +K+ D ATG E++E+ A L G + + P TK+ P +V S ++ R
Sbjct: 20 SLVCYEKQFADPLDHATGLEKKEMLARLAGNDDPYNMSIKRRPHSTKENPNIVYSSFESR 79
Query: 110 IVGCPGGEGG 119
I+GC E
Sbjct: 80 IMGCICDEDA 89
>gi|58261242|ref|XP_568031.1| cytochrome c oxidase polypeptide IV mitochondrial precursor
[Cryptococcus neoformans var. neoformans JEC21]
gi|57230113|gb|AAW46514.1| cytochrome c oxidase polypeptide iv, mitochondrial precursor,
putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 212
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 7 SSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKK--------- 57
S +A +A A S R+A A R + P F +R FS + S
Sbjct: 47 SPLFQAPKMASAIRSLRTA----LPALRRTVPAPAFTARAFSISAARSAGHGPPQLLGPG 102
Query: 58 ----RVEDVNPVATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVG 112
V + +TG ER EL LEG ++ ++ GT D P + S + +R +G
Sbjct: 103 AKAGEVPNDENQSTGLERFELLGNLEGVDVFDMKPLEITRLGTVDEPIPIYSLFPERQIG 162
Query: 113 CPG 115
C G
Sbjct: 163 CTG 165
>gi|146416701|ref|XP_001484320.1| hypothetical protein PGUG_03701 [Meyerozyma guilliermondii ATCC
6260]
Length = 154
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGP-FGTKDAPAVVKSYYDKRIVGCPGGEG 118
ATG ER E+ + EG ++ +D P GT P +V +Y R VGC G G
Sbjct: 63 ATGLERYEILGKREGIDVFNLDKPIFEGSGTMKDPYLVPTYIGHRYVGCRGKGG 116
>gi|134115733|ref|XP_773580.1| hypothetical protein CNBI1940 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256206|gb|EAL18933.1| hypothetical protein CNBI1940 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 212
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 7 SSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKK--------- 57
S +A +A A S R+A A R + P F +R FS + S
Sbjct: 47 SPLFQAPKMASAIRSLRTA----LPALRRTVPAPAFTARAFSISAARSAGHGPPQLLGPG 102
Query: 58 ----RVEDVNPVATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVG 112
V + +TG ER EL LEG ++ ++ GT D P + S + +R +G
Sbjct: 103 AKAGEVPNDENQSTGLERFELLGNLEGVDVFDMKPLEITRLGTVDEPIPIYSLFPERQIG 162
Query: 113 CPG 115
C G
Sbjct: 163 CTG 165
>gi|190347349|gb|EDK39603.2| hypothetical protein PGUG_03701 [Meyerozyma guilliermondii ATCC
6260]
Length = 154
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGP-FGTKDAPAVVKSYYDKRIVGCPGGEG 118
ATG ER E+ + EG ++ +D P GT P +V +Y R VGC G G
Sbjct: 63 ATGLERYEILGKREGIDVFNLDKPIFEGSGTMKDPYLVPTYIGHRYVGCRGKGG 116
>gi|390595456|gb|EIN04861.1| COX5B-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 167
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 66 ATGHEREELEAELEGKNILEID--YPTGPFGTKDAPAVVKSYYDKRIVGCPG 115
ATG ER +L ELEG ++ ++D + GT P V S R++GC G
Sbjct: 70 ATGLERLQLLGELEGVDVFDMDEVLDSSRLGTLADPVKVPSLAPARLIGCTG 121
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,986,759,479
Number of Sequences: 23463169
Number of extensions: 76699252
Number of successful extensions: 139689
Number of sequences better than 100.0: 282
Number of HSP's better than 100.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 139467
Number of HSP's gapped (non-prelim): 283
length of query: 119
length of database: 8,064,228,071
effective HSP length: 86
effective length of query: 33
effective length of database: 6,046,395,537
effective search space: 199531052721
effective search space used: 199531052721
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)