BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033442
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SSB8|CX5B2_ARATH Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis
thaliana GN=COX5B-2 PE=2 SV=1
Length = 171
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 89/126 (70%), Gaps = 8/126 (6%)
Query: 1 MWRRICSSQLKAQAL--ALAQYSCRSAPVNPSIASRSLISRPL------FASRHFSADSG 52
MWRRI SS LK+ + + A SCR A V + S S + + F+ SA +
Sbjct: 1 MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAAAD 60
Query: 53 TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVG 112
T+VKKRVEDV P+ATGHE+EEL+AELEG+ + +ID+P GPFGTK+APAVVKSYYD RIVG
Sbjct: 61 TAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVG 120
Query: 113 CPGGEG 118
CPGGEG
Sbjct: 121 CPGGEG 126
>sp|Q9LW15|CX5B1_ARATH Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis
thaliana GN=COX5B-1 PE=2 SV=1
Length = 176
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 90/127 (70%), Gaps = 9/127 (7%)
Query: 1 MWRRICSSQLKAQALALAQYSCR------SAPVNPSIAS-RSLISRPLFA-SRHFSADS- 51
MWRRI SSQLK A + S R + PV +A+ RS IS F R FS+DS
Sbjct: 1 MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDSV 60
Query: 52 GTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIV 111
T K+VEDV P+ATGHE+EELEAELEG+ + +ID+P GPFGTK+APA+VKSYYDKRIV
Sbjct: 61 ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIV 120
Query: 112 GCPGGEG 118
GCPGGEG
Sbjct: 121 GCPGGEG 127
>sp|Q9SSS5|CX5BL_ARATH Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis
thaliana GN=At1g52710 PE=2 SV=2
Length = 90
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 74 LEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
L+ E G+ +L+ID+P PFGTK++PAVV+SY+DKR +GC GGEG
Sbjct: 4 LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEG 48
>sp|P00428|COX5B_BOVIN Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus
GN=COX5B PE=1 SV=2
Length = 129
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++AS++L +R P S S SG V E ATG ERE + A +G++ I
Sbjct: 11 ALASQALRARGPNGVSVVRSMASGGGVPTDEEQ----ATGLEREVMLAARKGQDPYNILA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P GTK+ P +V S +KRIVGC
Sbjct: 67 PKATSGTKEDPNLVPSITNKRIVGC 91
>sp|P10606|COX5B_HUMAN Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens
GN=COX5B PE=1 SV=2
Length = 129
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
++A+++L +R P A+ S SG V E ATG ERE + A +G + +
Sbjct: 11 TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66
Query: 89 PTGPFGTKDAPAVVKSYYDKRIVGC 113
P G GT++ P +V S +KRIVGC
Sbjct: 67 PKGASGTREDPNLVPSISNKRIVGC 91
>sp|Q5S3G4|COX5B_PIG Cytochrome c oxidase subunit 5B, mitochondrial OS=Sus scrofa
GN=COX5B PE=2 SV=1
Length = 129
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREVMMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGC 91
>sp|Q710D6|COX5B_VULVU Cytochrome c oxidase subunit 5B, mitochondrial OS=Vulpes vulpes
GN=COX5B PE=1 SV=1
Length = 128
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + I P GTK+ P +V S +KRIVGC
Sbjct: 43 ATGLEREVMMAARKGLDPYNILAPKAAAGTKEDPNLVPSITNKRIVGC 90
>sp|Q5REG2|COX5B_PONAB Cytochrome c oxidase subunit 5B, mitochondrial OS=Pongo abelii
GN=COX5B PE=2 SV=1
Length = 129
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P G GT++ P +V S +KRIVGC
Sbjct: 44 ATGLEREIMLAAKKGLDPYNVLAPKGASGTREDPNLVPSISNKRIVGC 91
>sp|P29505|COX5_DICDI Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum GN=cxeA
PE=1 SV=3
Length = 120
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 90 TGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
TG FGT +P +V+S + RIV C GG+G
Sbjct: 53 TGAFGTLKSPVIVESIFHSRIVACEGGDG 81
>sp|P19536|COX5B_MOUSE Cytochrome c oxidase subunit 5B, mitochondrial OS=Mus musculus
GN=Cox5b PE=1 SV=1
Length = 128
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A +G + + P GTK+ P +V S +KRIVGC
Sbjct: 43 ATGLEREIMIAAQKGLDPYNMLPPKAASGTKEDPNLVPSISNKRIVGC 90
>sp|P80499|COX5B_SOLTU Cytochrome c oxidase subunit 5B, mitochondrial (Fragment)
OS=Solanum tuberosum PE=1 SV=1
Length = 28
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 54 SVKKRVEDVNPVATGHEREELEAE 77
+V K+VEDV P+ATGHERE L A+
Sbjct: 5 NVVKKVEDVMPIATGHEREXLXAQ 28
>sp|P12075|COX5B_RAT Cytochrome c oxidase subunit 5B, mitochondrial OS=Rattus norvegicus
GN=Cox5b PE=1 SV=2
Length = 129
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 66 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
ATG ERE + A G + + P GTK+ P +V S +KRIVGC
Sbjct: 44 ATGLEREIMIAAQRGLDPYNMLPPKAASGTKEDPNLVPSVSNKRIVGC 91
>sp|P04037|COX4_YEAST Cytochrome c oxidase subunit 4, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX4 PE=1
SV=1
Length = 155
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 67 TGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPGGEGG 119
TG R EL +LEG ++ + T P GT P +++SY D R VGC G G
Sbjct: 64 TGLARLELLGKLEGIDVFD----TKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAG 117
>sp|A3QF43|ASTB_SHELP N-succinylarginine dihydrolase OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=astB PE=3 SV=1
Length = 445
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 65 VATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSY-YDKRIVGCPGGE 117
V T + E++ + GK + I+ PT G +DA VKSY ++ +IV P GE
Sbjct: 270 VDTQKKLAEIQDKFNGKELHFIEVPTAKVGIQDA---VKSYLFNTQIVTLPNGE 320
>sp|B5EEE6|SYE_GEOBB Glutamate--tRNA ligase OS=Geobacter bemidjiensis (strain Bem / ATCC
BAA-1014 / DSM 16622) GN=gltX PE=3 SV=1
Length = 467
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 58 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRI 110
R+ED + + +E ++A LEG L +D+ GPF D + K Y +K I
Sbjct: 41 RIEDTDVARS--TQESVDAILEGMTWLGLDWDEGPFYQSDNFPLYKEYVEKLI 91
>sp|Q9CMI7|HIS82_PASMU Histidinol-phosphate aminotransferase 2 OS=Pasteurella multocida
(strain Pm70) GN=hisC2 PE=3 SV=1
Length = 365
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 55 VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDA 98
V + V+ ++P G EELE EL NI+++ PFG D+
Sbjct: 7 VNEGVKQLHPYQAGKPIEELERELGITNIIKLASNENPFGLPDS 50
>sp|A7MB35|ODPA_BOVIN Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Bos taurus GN=PDHA1 PE=2 SV=1
Length = 390
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 38 SRPLFASRHFSADSGTSVKK----RVEDVNPVATGHEREE 73
SR L ASRHF+ D+ +KK R+E+ PV T RE+
Sbjct: 21 SRVLVASRHFANDATFEIKKCDLHRLEEGPPVTTVLTRED 60
>sp|A4IZM7|GLMU_FRATW Bifunctional protein GlmU OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=glmU PE=3 SV=1
Length = 455
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 55 VKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGTKDA 98
V VE +NP V TGH +E++E L+G+NI + Y GT A
Sbjct: 36 VVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGTGHA 82
>sp|Q5NHR0|GLMU_FRATT Bifunctional protein GlmU OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=glmU PE=3 SV=1
Length = 455
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 55 VKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGTKDA 98
V VE +NP V TGH +E++E L+G+NI + Y GT A
Sbjct: 36 VVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGTGHA 82
>sp|Q0BN96|GLMU_FRATO Bifunctional protein GlmU OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=glmU PE=3 SV=1
Length = 455
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 55 VKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGTKDA 98
V VE +NP V TGH +E++E L+G+NI + Y GT A
Sbjct: 36 VVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGTGHA 82
>sp|A0Q565|GLMU_FRATN Bifunctional protein GlmU OS=Francisella tularensis subsp.
novicida (strain U112) GN=glmU PE=3 SV=1
Length = 455
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 55 VKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGTKDA 98
V VE +NP V TGH +E++E L+G+NI + Y GT A
Sbjct: 36 VVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGTGHA 82
>sp|B2SFB5|GLMU_FRATM Bifunctional protein GlmU OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=glmU PE=3 SV=1
Length = 455
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 55 VKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGTKDA 98
V VE +NP V TGH +E++E L+G+NI + Y GT A
Sbjct: 36 VVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGTGHA 82
>sp|Q2A4X7|GLMU_FRATH Bifunctional protein GlmU OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=glmU PE=3 SV=1
Length = 455
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 55 VKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGTKDA 98
V VE +NP V TGH +E++E L+G+NI + Y GT A
Sbjct: 36 VVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGTGHA 82
>sp|A7NAF3|GLMU_FRATF Bifunctional protein GlmU OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=glmU PE=3 SV=1
Length = 455
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 55 VKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGTKDA 98
V VE +NP V TGH +E++E L+G+NI + Y GT A
Sbjct: 36 VVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGTGHA 82
>sp|Q14J62|GLMU_FRAT1 Bifunctional protein GlmU OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=glmU PE=3 SV=1
Length = 455
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 55 VKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGTKDA 98
V VE +NP V TGH +E++E L+G+NI + Y GT A
Sbjct: 36 VVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGTGHA 82
>sp|O85298|MURE_BUCAP Putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=murE PE=5 SV=2
Length = 497
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 80 GKNILEIDYPTGPFGTKDAPAVVKSYYDKR---IVGCPGGE 117
GK + IDY P K A +KSYY K+ I GC GGE
Sbjct: 352 GKPKVIIDYAHTPDALKKALNAIKSYYKKKIWCIFGC-GGE 391
>sp|Q5R490|ODPA_PONAB Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Pongo abelii GN=PDHA1 PE=2 SV=1
Length = 390
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 32 ASRSLISRPLFASRHFSADSGTSVKK----RVEDVNPVATGHEREE 73
AS+ SR L ASR+F+ D+ +KK R+E+ PV T RE+
Sbjct: 15 ASQKPASRVLVASRNFANDATFEIKKCDLHRLEEGPPVTTVLTRED 60
>sp|P08559|ODPA_HUMAN Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Homo sapiens GN=PDHA1 PE=1 SV=3
Length = 390
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 32 ASRSLISRPLFASRHFSADSGTSVKK----RVEDVNPVATGHEREE 73
AS+ SR L ASR+F+ D+ +KK R+E+ PV T RE+
Sbjct: 15 ASQKPASRVLVASRNFANDATFEIKKCDLHRLEEGPPVTTVLTRED 60
>sp|A5A6L0|ODPA_PANTR Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Pan troglodytes GN=PDHA1 PE=2 SV=1
Length = 390
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 32 ASRSLISRPLFASRHFSADSGTSVKK----RVEDVNPVATGHEREE 73
AS+ SR L ASR+F+ D+ +KK R+E+ PV T RE+
Sbjct: 15 ASQKPASRVLVASRNFANDATFEIKKCDLHRLEEGPPVTTVLTRED 60
>sp|Q8HXW9|ODPA_MACFA Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Macaca fascicularis GN=PDHA1 PE=2 SV=1
Length = 390
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 32 ASRSLISRPLFASRHFSADSGTSVKK----RVEDVNPVATGHEREE 73
AS+ SR L ASR+F+ D+ +KK R+E+ PV T RE+
Sbjct: 15 ASQKPASRVLVASRNFANDATFEIKKCDLHRLEEGPPVTTVLTRED 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,512,387
Number of Sequences: 539616
Number of extensions: 1886699
Number of successful extensions: 3407
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3382
Number of HSP's gapped (non-prelim): 34
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)