Query 033442
Match_columns 119
No_of_seqs 134 out of 214
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 23:24:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_F VI, cytochrome C oxidas 100.0 1.8E-32 6.2E-37 194.7 6.3 65 55-119 2-66 (98)
2 2y69_F Cytochrome C oxidase su 100.0 1.2E-31 4.2E-36 198.8 5.8 65 55-119 33-97 (129)
3 2odx_A Cytochrome C oxidase po 99.7 3E-19 1E-23 122.8 2.5 40 79-118 1-41 (80)
4 2jrr_A Uncharacterized protein 68.1 2.1 7.3E-05 28.1 1.5 22 95-118 2-23 (67)
5 2jvm_A Uncharacterized protein 39.6 16 0.00056 24.7 2.1 22 95-118 15-36 (80)
6 1aie_A P53; oligomer, DNA; 1.5 24.1 45 0.0015 18.9 1.9 15 65-79 6-20 (31)
7 3zy0_A Tumor protein P63; tran 22.9 42 0.0014 19.2 1.6 15 65-79 9-23 (32)
8 2wqi_A Tumor protein P73; tumo 16.5 68 0.0023 20.0 1.7 15 65-79 10-24 (51)
9 3zy1_A Tumor protein 63; trans 15.6 83 0.0028 19.2 1.9 15 65-79 9-23 (46)
10 2bcx_B Ryanodine receptor 1; E 14.6 1.1E+02 0.0036 17.2 2.0 14 2-15 7-20 (30)
No 1
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=99.97 E-value=1.8e-32 Score=194.74 Aligned_cols=65 Identities=37% Similarity=0.453 Sum_probs=62.1
Q ss_pred ccccCCCCCccccchhHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeeeccCCceeEeeCCCCCC
Q 033442 55 VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGG 119 (119)
Q Consensus 55 ~~g~vpdd~EqATGlER~ELla~~~G~DpFdm~~~~~~~GTke~P~lVpS~~~~RIVGC~g~p~e 119 (119)
+.|+||||+||||||||+||+++++|+|||||+++++++|||||||||||++++|||||+|++++
T Consensus 2 ~~g~iPtd~eqATGlEr~Ella~~~G~Dpfd~~~~~~~~GTke~P~lVpS~~~~RiVGC~~~~D~ 66 (98)
T 1v54_F 2 SGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDN 66 (98)
T ss_dssp CCCBCCCHHHHCCHHHHHHHHHHHTTCCTTCCSCCCCCCCCSSSCEEEECSSSEEEEEECCSTTC
T ss_pred CCCCCCChHHhccCHHHHHHHHHHcCCCcccccCCCCCCCcccCCeEeecCCCCeEEeecCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999998763
No 2
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=99.97 E-value=1.2e-31 Score=198.84 Aligned_cols=65 Identities=37% Similarity=0.453 Sum_probs=61.2
Q ss_pred ccccCCCCCccccchhHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeeeccCCceeEeeCCCCCC
Q 033442 55 VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGG 119 (119)
Q Consensus 55 ~~g~vpdd~EqATGlER~ELla~~~G~DpFdm~~~~~~~GTke~P~lVpS~~~~RIVGC~g~p~e 119 (119)
++|+||||+||||||||+||+++++|+|||||+++++++|||||||||||++|+|||||+|++++
T Consensus 33 ~~g~iPtd~eqATGlER~ELla~~~G~DpFd~~~~~~~~GTkedP~lVpS~~d~RiVGC~~~~Ds 97 (129)
T 2y69_F 33 SGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDN 97 (129)
T ss_dssp --CBCCCHHHHCCHHHHHHHHHHHTTCCTTCCSCCCCCCCCSSSCEEEEESSSEEEEEECCSTTC
T ss_pred CCCCCCCHHHhccCHHHHHHHHHHcCCCccccCCCCCCCCcccCCeEeecCCCCeEEeecCCCCC
Confidence 67999999999999999999999999999999999999999999999999999999999998764
No 3
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3e-19 Score=122.79 Aligned_cols=40 Identities=28% Similarity=0.495 Sum_probs=21.9
Q ss_pred hCCCCCCCCCCCC-CCCCCCCCeeeeccCCceeEeeCCCCC
Q 033442 79 EGKNILEIDYPTG-PFGTKDAPAVVKSYYDKRIVGCPGGEG 118 (119)
Q Consensus 79 ~G~DpFdm~~~~~-~~GTke~P~lVpS~~~~RIVGC~g~p~ 118 (119)
+|.|||||+++++ ++|||||||||||++++|||||+|+|+
T Consensus 1 ~G~D~fd~~p~~~~~~GT~e~P~lVpS~~~~RiVGC~g~p~ 41 (80)
T 2odx_A 1 MMADVFDTKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPA 41 (80)
T ss_dssp ------------------CCSCSEECCSSSSCCEEESSSTT
T ss_pred CCcCcccccccccCCCCCccCCeEecCCCCCeEEeeeCCCC
Confidence 6999999999985 899999999999999999999999954
No 4
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=68.11 E-value=2.1 Score=28.11 Aligned_cols=22 Identities=50% Similarity=0.776 Sum_probs=16.9
Q ss_pred CCCCCeeeeccCCceeEeeCCCCC
Q 033442 95 TKDAPAVVKSYYDKRIVGCPGGEG 118 (119)
Q Consensus 95 Tke~P~lVpS~~~~RIVGC~g~p~ 118 (119)
|++.|-+| ..+.|+|.|.|+.+
T Consensus 2 ~~~ape~i--~v~~r~v~CdGg~g 23 (67)
T 2jrr_A 2 TIQAPETK--IVDKSRVACDGGEG 23 (67)
T ss_dssp CCCCCEEE--EESSSEEEEEESST
T ss_pred CCCCCceE--EECCCEEEeCCCCC
Confidence 45677777 56889999988765
No 5
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=39.56 E-value=16 Score=24.66 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=15.2
Q ss_pred CCCCCeeeeccCCceeEeeCCCCC
Q 033442 95 TKDAPAVVKSYYDKRIVGCPGGEG 118 (119)
Q Consensus 95 Tke~P~lVpS~~~~RIVGC~g~p~ 118 (119)
|.+.|-+| ..+.|+|.|.|+.+
T Consensus 15 ~~~apevI--~V~~~~V~CdGg~g 36 (80)
T 2jvm_A 15 SIEAPETV--VVSTWKVACDGGEG 36 (80)
T ss_dssp CCSCCSEE--EESCSEEEECCCST
T ss_pred ccCCCCeE--EECCcEEEcCCCCC
Confidence 34566555 44589999998765
No 6
>1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A
Probab=24.08 E-value=45 Score=18.92 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=12.5
Q ss_pred cccchhHHHHHHHHh
Q 033442 65 VATGHEREELEAELE 79 (119)
Q Consensus 65 qATGlER~ELla~~~ 79 (119)
|.-|.||+||+-++.
T Consensus 6 ~VrGRe~yEml~ki~ 20 (31)
T 1aie_A 6 QIRGRERFEMFRELN 20 (31)
T ss_dssp CCCSHHHHHHHHHHH
T ss_pred EeccHHHHHHHHHHH
Confidence 567999999998864
No 7
>3zy0_A Tumor protein P63; transcription, transcription factor, tetramerization domain, cycle control; HET: MSE; 1.90A {Homo sapiens}
Probab=22.93 E-value=42 Score=19.16 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.7
Q ss_pred cccchhHHHHHHHHh
Q 033442 65 VATGHEREELEAELE 79 (119)
Q Consensus 65 qATGlER~ELla~~~ 79 (119)
|.-|.||+||+-++.
T Consensus 9 ~VrGRe~ye~l~ki~ 23 (32)
T 3zy0_A 9 PVRGRETYEMLLKIK 23 (32)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred EEechhhHHHHHHHH
Confidence 678999999998764
No 8
>2wqi_A Tumor protein P73; tumor suppression, transcription factor, tetramer, oligomerization domain, DNA-binding, cooperativity, transcription; 1.70A {Homo sapiens} PDB: 2wtt_A 2kby_A 2wqj_A
Probab=16.48 E-value=68 Score=20.04 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=12.8
Q ss_pred cccchhHHHHHHHHh
Q 033442 65 VATGHEREELEAELE 79 (119)
Q Consensus 65 qATGlER~ELla~~~ 79 (119)
+.-|.||+||+.++.
T Consensus 10 ~VRGRe~yEml~ki~ 24 (51)
T 2wqi_A 10 QVRGRENFEILMKLK 24 (51)
T ss_dssp EESCHHHHHHHHHHH
T ss_pred EEecHHHHHHHHHHH
Confidence 567999999998875
No 9
>3zy1_A Tumor protein 63; transcription, transcription factor, tetramerization domain, cycle control; 2.15A {Homo sapiens}
Probab=15.57 E-value=83 Score=19.22 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=13.0
Q ss_pred cccchhHHHHHHHHh
Q 033442 65 VATGHEREELEAELE 79 (119)
Q Consensus 65 qATGlER~ELla~~~ 79 (119)
+.-|.||+||+-++.
T Consensus 9 ~VrGRe~yE~l~ki~ 23 (46)
T 3zy1_A 9 PVRGRETYEMLLKIK 23 (46)
T ss_dssp CCSSHHHHHHHHHHH
T ss_pred EEechhhHHHHHHHH
Confidence 678999999998875
No 10
>2bcx_B Ryanodine receptor 1; EF-hand, type-2 turn, calcium binding protein; 2.00A {Gallus gallus}
Probab=14.65 E-value=1.1e+02 Score=17.16 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=11.8
Q ss_pred hhhHhhhhhHHHHH
Q 033442 2 WRRICSSQLKAQAL 15 (119)
Q Consensus 2 wrr~~~~~l~~~~~ 15 (119)
||.+++.+-|+.+-
T Consensus 7 w~~~~s~qRKRaVv 20 (30)
T 2bcx_B 7 WHKLLSKQRRRAVV 20 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHH
Confidence 99999988888764
Done!