BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033445
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 14/77 (18%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL--------------RGRR 85
+Q +I N +VIFSK+ C YC AK++F D+N VVELDL G R
Sbjct: 42 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 101
Query: 86 TVPQIFVNGEHIGGADD 102
TVP+IFVNG IGGA D
Sbjct: 102 TVPRIFVNGTFIGGATD 118
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 14/77 (18%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL--------------RGRR 85
+Q +I N +VIFSK+ C YC AK++F D+N VVELDL G R
Sbjct: 28 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 87
Query: 86 TVPQIFVNGEHIGGADD 102
TVP+IFVNG IGGA D
Sbjct: 88 TVPRIFVNGTFIGGATD 104
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 14/77 (18%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL--------------RGRR 85
+Q +I N +VIFSK+ C YC AK++F D+N VVELDL G R
Sbjct: 20 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 79
Query: 86 TVPQIFVNGEHIGGADD 102
TVP+IFVNG IGGA D
Sbjct: 80 TVPRIFVNGTFIGGATD 96
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 15/78 (19%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD---------------LRGR 84
++ ++ N +VI+SK++C YC K +F L QP VVELD L G+
Sbjct: 12 IRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQ 71
Query: 85 RTVPQIFVNGEHIGGADD 102
TVP +FV G+HIGG D
Sbjct: 72 HTVPNVFVCGKHIGGCTD 89
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 15/78 (19%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD---------------LRGR 84
V+ ++ N +V++SK++C Y K +F LN P VVELD L G+
Sbjct: 11 VKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQ 70
Query: 85 RTVPQIFVNGEHIGGADD 102
TVP +F+ G+HIGG D
Sbjct: 71 HTVPNVFIGGKHIGGCTD 88
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 3 KRGWQSRFLVEAVGLLFFLLLGNAP----TATEADHSVSAFVQNSIFSNKIVIFSKSYCP 58
KR W+ LV+ + + N P ++AD + I IF+K CP
Sbjct: 122 KRSWRYSXLVKNGVVEKXFIEPNEPGDPFKVSDADTXLKYLAPQHQVQESISIFTKPGCP 181
Query: 59 YCLRAKRIFAD--LNEQPFVVELD--------LRGRRTVPQIFVNGEHIGGADDLK 104
+C +AK++ D L+ + ++ D + GR TVPQ+F+ G+HIGG+DDL+
Sbjct: 182 FCAKAKQLLHDKGLSFEEIILGHDATIVSVRAVSGRTTVPQVFIGGKHIGGSDDLE 237
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 14/81 (17%)
Query: 44 IFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD--------------LRGRRTVPQ 89
I +++VIFSKSYCP+ R K +F+ L + V+ELD + ++TVP
Sbjct: 14 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPN 73
Query: 90 IFVNGEHIGGADDLKAAVLSG 110
IFVN H+GG D A SG
Sbjct: 74 IFVNKVHVGGCDQTFQAYQSG 94
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 18/83 (21%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCL-------------RAKRIFADLNEQPFVVEL-----DL 81
V++ I N+I + SK+YCPYC R+K + LN+ ++ ++
Sbjct: 18 VKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 77
Query: 82 RGRRTVPQIFVNGEHIGGADDLK 104
G+RTVP I++NG+HIGG DDL+
Sbjct: 78 NGQRTVPNIYINGKHIGGNDDLQ 100
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 18/86 (20%)
Query: 38 AFVQNSIFSNKIVIFSKSYCPYCLRA-KRIFADLN---EQPFVVELD------------- 80
A V++ I ++ + +K+YCPYC +F +LN + V+ELD
Sbjct: 28 AHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALE 87
Query: 81 -LRGRRTVPQIFVNGEHIGGADDLKA 105
+ G++TVP +++NG+HIGG DL+
Sbjct: 88 EISGQKTVPNVYINGKHIGGNSDLET 113
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 18/91 (19%)
Query: 38 AFVQNSIFSNKIVIFSKSYCPYCLRA-KRIFADLN---EQPFVVELD------------- 80
A V++ I ++ + +K+YCPYC +F +LN + V+ELD
Sbjct: 8 AHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALE 67
Query: 81 -LRGRRTVPQIFVNGEHIGGADDLKAAVLSG 110
+ G++TVP +++NG+HIGG DL+ +G
Sbjct: 68 EISGQKTVPNVYINGKHIGGNSDLETLKKNG 98
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 18/83 (21%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCL-------------RAKRIFADLNEQPFVVEL-----DL 81
V++ I N+I + SK+YCPY R+K + LN+ ++ ++
Sbjct: 10 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 69
Query: 82 RGRRTVPQIFVNGEHIGGADDLK 104
G+RTVP I++NG+HIGG DDL+
Sbjct: 70 NGQRTVPNIYINGKHIGGNDDLQ 92
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 14/70 (20%)
Query: 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD--------------LRGRRTVPQIF 91
S +V+FSK+YC YC R K++ + VVELD GR TVP +F
Sbjct: 19 SAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVF 78
Query: 92 VNGEHIGGAD 101
+ G+ IGG D
Sbjct: 79 IGGKQIGGCD 88
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 14/70 (20%)
Query: 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD--------------LRGRRTVPQIF 91
S +V+FSK+YC YC R K++ + VVELD GR TVP +F
Sbjct: 20 SAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVF 79
Query: 92 VNGEHIGGAD 101
+ G+ IGG D
Sbjct: 80 IGGKQIGGCD 89
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 18/83 (21%)
Query: 40 VQNSIFSNKIVIFSKSYCPYCL-------------RAKRIFADLNEQPFVVEL-----DL 81
V++ I N+I + SK+YCPY R+K + LN+ ++ ++
Sbjct: 254 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 313
Query: 82 RGRRTVPQIFVNGEHIGGADDLK 104
G+RTVP I++NG+HIGG DDL+
Sbjct: 314 NGQRTVPNIYINGKHIGGNDDLQ 336
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 49 IVIFSKSYCPYCLRAKRIFA-----------DLNEQPFVVELDLRGRRTVPQIFVNGEHI 97
+ I++K CPYC RAK + + D N + GR TVPQIF++ +HI
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 98 GGADDLKA 105
GG DDL A
Sbjct: 63 GGYDDLYA 70
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 49 IVIFSKSYCPYCLRAKRIFA----DLNEQPFVVELDLR-------GRRTVPQIFVNGEHI 97
++I+++ CPYC RAK + A + NE +LR GR T PQIF+ H+
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHV 67
Query: 98 GGADDLKA 105
GG DDL A
Sbjct: 68 GGCDDLYA 75
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 18/86 (20%)
Query: 38 AFVQNSIFSNKIVIFSKSYCPYCLRA-KRIFADLN---EQPFVVELD------------- 80
A V++ I ++ + +K+YCPY +F +LN + V+ELD
Sbjct: 11 AHVKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALE 70
Query: 81 -LRGRRTVPQIFVNGEHIGGADDLKA 105
+ G++TVP +++NG+HIGG DL+
Sbjct: 71 EISGQKTVPNVYINGKHIGGNSDLET 96
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 39 FVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVEL-----------------DL 81
FV I K+V+F K CPYC RA+ I + L + ++E L
Sbjct: 5 FVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQL 64
Query: 82 RGRRTVPQIFVNGEHIGGADDLKAAVLSG 110
G RTVP++F+ + IGG DL + SG
Sbjct: 65 TGARTVPRVFIGKDCIGGCSDLVSLQQSG 93
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 12/75 (16%)
Query: 43 SIFSNKIVIFSKSYCPYCLRAKRIFA--DLNEQPFVVELD----------LRGRRTVPQI 90
S S KI I++ S CP+C+RA + + Q + ++ D G+R++PQI
Sbjct: 12 SAVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQI 71
Query: 91 FVNGEHIGGADDLKA 105
F++ +HIGG DD+ A
Sbjct: 72 FIDDQHIGGCDDIYA 86
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 39 FVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVEL-----------------DL 81
FV + I K+V+F K CPY RA+ I + L + ++E L
Sbjct: 4 FVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQL 63
Query: 82 RGRRTVPQIFVNGEHIGGADDLKAAVLSG 110
G RTVP++F+ + IGG+ DL + SG
Sbjct: 64 TGARTVPRVFIGKDSIGGSSDLVSLQQSG 92
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 17/86 (19%)
Query: 37 SAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVEL----------------- 79
AFV + I K+V+F K CP+C + + + + L + ++E
Sbjct: 2 QAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQ 61
Query: 80 DLRGRRTVPQIFVNGEHIGGADDLKA 105
L G RTVP++F+ E IGG DL++
Sbjct: 62 QLTGARTVPRVFIGKECIGGCTDLES 87
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 49 IVIFSKSYCPYCLRAKRIFA-----------DLNEQPFVVELDLRGRRTVPQIFVNGEHI 97
+ I++K CPY RAK + + D N + GR TVPQIF++ +HI
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 98 GGADDLKA 105
GG DDL A
Sbjct: 63 GGYDDLYA 70
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 18/76 (23%)
Query: 48 KIVIFSKSYCPYCLRAKRIFADLN-------------EQPFVVELDLRGR-----RTVPQ 89
K+ I++++ CPYC+ AK+ F + N F E + G+ TVPQ
Sbjct: 5 KVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEXNQSGKVIFPISTVPQ 64
Query: 90 IFVNGEHIGGADDLKA 105
IF++ EHIGG +LKA
Sbjct: 65 IFIDDEHIGGFTELKA 80
>pdb|1EGO|A Chain A, Nmr Structure Of Oxidized Escherichia Coli Glutaredoxin:
Comparison With Reduced E. Coli Glutaredoxin And
Functionally Related Proteins
pdb|1EGR|A Chain A, Sequence-Specific 1h N.M.R. Assignments And Determination
Of The Three-Dimensional Structure Of Reduced
Escherichia Coli Glutaredoxin
Length = 85
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 18/78 (23%)
Query: 48 KIVIFSKSYCPYCLRAKRIFADLNEQ-------------PFVVELDLRGR-----RTVPQ 89
+ VIF +S CPYC+RAK + L+ + + + DL+ + TVPQ
Sbjct: 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQ 61
Query: 90 IFVNGEHIGGADDLKAAV 107
IFV+ +HIGG D A V
Sbjct: 62 IFVDQQHIGGYTDFAAWV 79
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 14/70 (20%)
Query: 48 KIVIFSKSYCPYCLRAKRI-------FADLN-----EQPFVVELDLRGRRTVPQIFVNGE 95
+I+++++ CPYC RA+ + + D++ Q V + GR T PQIF+
Sbjct: 7 EIILYTRPNCPYCKRARDLLDKKGVKYTDIDASTSLRQEMVQRAN--GRNTFPQIFIGDY 64
Query: 96 HIGGADDLKA 105
H+GG DDL A
Sbjct: 65 HVGGCDDLYA 74
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin
Glutatione Reductase From Schistosoma Mansoni In
Complex With Auranofin
Length = 598
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRGR----------- 84
S +++ ++ S +++FSK+ CPYC + K + A+ + +ELD
Sbjct: 7 TSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASF 66
Query: 85 ---RTVPQIFVNGEHIG 98
TVPQ+FV G+ IG
Sbjct: 67 SKIETVPQMFVRGKFIG 83
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Nadph
Length = 598
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRGR----------- 84
S +++ ++ S +++FSK+ CPYC + K + A+ + +ELD
Sbjct: 7 TSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASF 66
Query: 85 ---RTVPQIFVNGEHIG 98
TVPQ+FV G+ IG
Sbjct: 67 SKIETVPQMFVRGKFIG 83
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRGR----------- 84
S +++ ++ S +++FSK+ CPYC + K + A+ + +ELD
Sbjct: 7 TSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASF 66
Query: 85 ---RTVPQIFVNGEHIG 98
TVPQ+FV G+ IG
Sbjct: 67 SKIETVPQMFVRGKFIG 83
>pdb|1QFN|A Chain A, Glutaredoxin-1-Ribonucleotide Reductase B1 Mixed Disulfide
Bond
pdb|1GRX|A Chain A, Structure Of E. Coli Glutaredoxin
Length = 85
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 18/78 (23%)
Query: 48 KIVIFSKSYCPYCLRAKRIFADLNEQ-------------PFVVELDLRGR-----RTVPQ 89
+ VIF +S CPY +RAK + L+ + + + DL+ + TVPQ
Sbjct: 2 QTVIFGRSGCPYSVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQ 61
Query: 90 IFVNGEHIGGADDLKAAV 107
IFV+ +HIGG D A V
Sbjct: 62 IFVDQQHIGGYTDFAAWV 79
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 17/82 (20%)
Query: 39 FVQNSIFSNKIVIFSKSYCPYCLRAKRI----------FADLNEQPFVVELDLR------ 82
FVQ + +NK+ IF K CP+C A I + ++ + F E +LR
Sbjct: 11 FVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQI 70
Query: 83 -GRRTVPQIFVNGEHIGGADDL 103
G +TVP+IF IGG DL
Sbjct: 71 TGGKTVPRIFFGKTSIGGYSDL 92
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 21/81 (25%)
Query: 49 IVIFSKSYCPYCLRAKRIFADLNEQPFV-----VELD--------------LRGRRTVPQ 89
I+IFSKS C Y K + NE F+ +ELD + GR TVP
Sbjct: 16 IIIFSKSTCSYSKGXKELLE--NEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPN 73
Query: 90 IFVNGEHIGGADDLKAAVLSG 110
+ VNG GG +++K G
Sbjct: 74 LLVNGVSRGGNEEIKKLHTQG 94
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 17/82 (20%)
Query: 39 FVQNSIFSNKIVIFSKSYCPYCLRAKRI----------FADLNEQPFVVELDLR------ 82
FVQ + +NK+ IF K P+C A I + ++ + F E +LR
Sbjct: 11 FVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQI 70
Query: 83 -GRRTVPQIFVNGEHIGGADDL 103
G +TVP+IF IGG DL
Sbjct: 71 TGGKTVPRIFFGKTSIGGYSDL 92
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 15/67 (22%)
Query: 48 KIVIFSKSYCPYCLRAKRIFADL-NEQPFVVELDL------------RGRRTVPQIFVNG 94
KI +F+ CP+C AKR+ ++ NE P VE++ G VP I +NG
Sbjct: 5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVING 64
Query: 95 --EHIGG 99
E IG
Sbjct: 65 DVEFIGA 71
>pdb|1AAZ|A Chain A, The Structure Of Oxidized Bacteriophage T4 Glutaredoxin
(Thioredoxin)
pdb|1AAZ|B Chain B, The Structure Of Oxidized Bacteriophage T4 Glutaredoxin
(Thioredoxin)
pdb|1DE1|A Chain A, Nmr Structures Of Oxidized Bacteriophage T4 Glutaredoxin
pdb|1DE2|A Chain A, Nmr Structures Of Reduced Bacteriophage T4 Glutaredoxin
Length = 87
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 24/71 (33%)
Query: 57 CPYCLRAKRIFADLNEQPF----------------VVEL------DLRGRRTVPQIFV-N 93
C YC AKR+ + +QPF + EL D + T+PQ+F +
Sbjct: 14 CVYCDNAKRLLT-VKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPD 72
Query: 94 GEHIGGADDLK 104
G HIGG D L+
Sbjct: 73 GSHIGGFDQLR 83
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 86 TVPQIFVNGEHIGGADDLKAAVLSG 110
T+PQ++VN E IGG D + + SG
Sbjct: 74 TIPQLYVNKEFIGGCDVITSMARSG 98
>pdb|2LQO|A Chain A, Mrx1 Reduced
pdb|2LQQ|A Chain A, Oxidized Mrx1
Length = 92
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 31/83 (37%)
Query: 49 IVIFSKSYCPYCLR------AKRIFADLNEQPFVVELDLR--------------GRRTVP 88
+ I++ S+C YCLR A RI D E+D+ G RTVP
Sbjct: 6 LTIYTTSWCGYCLRLKTALTANRIAYD--------EVDIEHNRAAAEFVGSVNGGNRTVP 57
Query: 89 QI-FVNGEHIG--GADDLKAAVL 108
+ F +G + AD++KA ++
Sbjct: 58 TVKFADGSTLTNPSADEVKAKLV 80
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 86 TVPQIFVNGEHIGGAD 101
T+PQ+++NGE +GG D
Sbjct: 76 TIPQVYLNGEFVGGCD 91
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 44 IFSNKIVIFSKS-----YCPYCLRAKRIFADLNEQPF----VVELDL--RGRR------T 86
+ S+K+V+F K C + +I LN PF ++E +L +G + T
Sbjct: 15 VTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLN-APFESVNILENELLRQGLKEYSSWPT 73
Query: 87 VPQIFVNGEHIGGADDLKAAVLSG 110
PQ++++GE GG D A SG
Sbjct: 74 FPQLYIDGEFFGGCDITVEAYKSG 97
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
Query: 40 VQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVEL----DLRGR------ 84
+Q I N I+++ K C + +A + A E+ V++ D+R
Sbjct: 28 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN 87
Query: 85 -RTVPQIFVNGEHIGGAD 101
T PQ++V+GE +GG D
Sbjct: 88 WPTFPQLWVDGELVGGCD 105
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
Query: 40 VQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVEL----DLRGR------ 84
+Q I N I+++ K C + +A + A E+ V++ D+R
Sbjct: 8 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN 67
Query: 85 -RTVPQIFVNGEHIGGAD 101
T PQ++V+GE +GG D
Sbjct: 68 WPTFPQLWVDGELVGGCD 85
>pdb|1G7O|A Chain A, Nmr Solution Structure Of Reduced E. Coli Glutaredoxin 2
Length = 215
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 51 IFSKSYCPYCLRAKRIF 67
++ +CPYCL+A+ IF
Sbjct: 3 LYIYDHCPYCLKARMIF 19
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 86 TVPQIFVNGEHIGGADDLK 104
T PQ++V+GE IGG D +K
Sbjct: 71 TYPQLYVSGELIGGLDIIK 89
>pdb|3IR4|A Chain A, 1.2 Angstrom Crystal Structure Of The Glutaredoxin 2
(Grxb) From Salmonella Typhimurium In Complex With
Glutathione
Length = 218
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 46 SNKIVIFSKSYCPYCLRAKRIF 67
SN ++ +CP+C++A+ IF
Sbjct: 1 SNAXKLYIYDHCPFCVKARXIF 22
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 86 TVPQIFVNGEHIGGADDLKAAVLSG 110
T PQ++V GE +GG D +K +G
Sbjct: 72 TYPQLYVKGELVGGLDIVKELKENG 96
>pdb|1WJK|A Chain A, Solution Structure Of Hypothetical Protein C330018d20rik
From Mus Musculus
Length = 100
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL----------RGRRTVPQIFVNGEHI 97
+ +F+K+ CP C AK + ++ + E+D+ R + +P +NG+ +
Sbjct: 19 LTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFDIPVFHLNGQFL 77
>pdb|1ABA|A Chain A, The Structure Of Oxidized Bacteriophage T4 Glutaredoxin
(Thioredoxin). Refinement Of Native And Mutant Proteins
Length = 87
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 24/71 (33%)
Query: 57 CPYCLRAKRIFADLNEQPF----------------VVEL------DLRGRRTVPQIFV-N 93
C C AKR+ + +QPF + EL D + T+PQ+F +
Sbjct: 14 CGPCDNAKRLLT-VKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPD 72
Query: 94 GEHIGGADDLK 104
G HIGG D L+
Sbjct: 73 GSHIGGFDQLR 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,951,995
Number of Sequences: 62578
Number of extensions: 94268
Number of successful extensions: 319
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 47
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)