Query 033445
Match_columns 119
No_of_seqs 168 out of 1194
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 13:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 99.9 4.9E-27 1.1E-31 154.5 9.4 79 40-118 1-93 (99)
2 PRK10824 glutaredoxin-4; Provi 99.9 6.8E-27 1.5E-31 157.6 10.2 85 34-118 2-102 (115)
3 PHA03050 glutaredoxin; Provisi 99.9 1.7E-26 3.8E-31 154.2 10.4 82 37-118 3-101 (108)
4 TIGR00365 monothiol glutaredox 99.9 2.6E-25 5.7E-30 145.8 10.1 80 37-116 2-97 (97)
5 KOG1752 Glutaredoxin and relat 99.9 5.6E-25 1.2E-29 145.9 10.2 83 36-118 3-99 (104)
6 cd03028 GRX_PICOT_like Glutare 99.9 2.4E-23 5.2E-28 134.5 8.5 74 40-113 1-90 (90)
7 PTZ00062 glutaredoxin; Provisi 99.9 1.5E-22 3.3E-27 148.4 10.6 86 33-118 99-200 (204)
8 PRK10638 glutaredoxin 3; Provi 99.9 5.5E-22 1.2E-26 126.0 9.8 71 47-117 2-83 (83)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 1E-21 2.2E-26 123.1 8.8 68 49-116 1-79 (79)
10 TIGR02180 GRX_euk Glutaredoxin 99.8 1.7E-20 3.8E-25 117.8 8.7 68 49-116 1-84 (84)
11 COG0695 GrxC Glutaredoxin and 99.8 1.8E-20 3.9E-25 118.9 8.0 65 48-112 2-79 (80)
12 COG0278 Glutaredoxin-related p 99.8 7.1E-20 1.5E-24 119.5 9.2 85 34-118 2-103 (105)
13 TIGR02190 GlrX-dom Glutaredoxi 99.8 7.8E-20 1.7E-24 115.2 8.8 65 43-107 4-78 (79)
14 cd03418 GRX_GRXb_1_3_like Glut 99.8 9.2E-20 2E-24 112.7 8.8 63 48-110 1-75 (75)
15 cd03031 GRX_GRX_like Glutaredo 99.8 9.7E-20 2.1E-24 127.5 9.2 71 48-118 1-92 (147)
16 cd03419 GRX_GRXh_1_2_like Glut 99.8 1.5E-19 3.2E-24 113.3 8.5 68 48-115 1-82 (82)
17 cd03029 GRX_hybridPRX5 Glutare 99.8 1.6E-19 3.6E-24 111.4 8.3 60 48-107 2-71 (72)
18 cd03027 GRX_DEP Glutaredoxin ( 99.8 5E-19 1.1E-23 109.6 7.8 60 48-107 2-72 (73)
19 TIGR02183 GRXA Glutaredoxin, G 99.8 1.6E-18 3.4E-23 111.0 8.0 62 49-110 2-81 (86)
20 PRK11200 grxA glutaredoxin 1; 99.8 2E-18 4.4E-23 109.8 8.4 63 47-109 1-81 (85)
21 PRK12759 bifunctional gluaredo 99.7 5.9E-18 1.3E-22 135.1 9.5 70 47-118 2-90 (410)
22 cd02066 GRX_family Glutaredoxi 99.7 2.3E-16 5E-21 95.1 8.2 60 48-107 1-71 (72)
23 KOG0911 Glutaredoxin-related p 99.6 8.8E-16 1.9E-20 113.1 8.9 83 36-118 128-226 (227)
24 PF00462 Glutaredoxin: Glutare 99.6 1.7E-15 3.6E-20 90.4 6.5 49 49-97 1-60 (60)
25 PRK10329 glutaredoxin-like pro 99.6 5.9E-15 1.3E-19 93.7 8.7 60 48-107 2-73 (81)
26 cd03030 GRX_SH3BGR Glutaredoxi 99.6 5.8E-15 1.3E-19 96.0 8.7 69 49-117 2-91 (92)
27 TIGR02194 GlrX_NrdH Glutaredox 99.6 4.5E-15 9.8E-20 91.7 6.5 54 49-102 1-65 (72)
28 TIGR02196 GlrX_YruB Glutaredox 99.4 5E-12 1.1E-16 76.4 7.7 55 48-102 1-66 (74)
29 cd02973 TRX_GRX_like Thioredox 99.3 8E-12 1.7E-16 75.5 5.6 51 48-98 2-64 (67)
30 cd02976 NrdH NrdH-redoxin (Nrd 99.3 2.2E-11 4.8E-16 73.5 7.3 55 48-102 1-66 (73)
31 TIGR02200 GlrX_actino Glutared 99.2 1.6E-10 3.4E-15 70.9 8.1 53 48-100 1-66 (77)
32 KOG2824 Glutaredoxin-related p 99.2 9.6E-11 2.1E-15 88.7 6.7 73 46-118 130-223 (281)
33 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 1.5E-09 3.3E-14 69.9 6.6 64 35-98 2-77 (89)
34 cd03040 GST_N_mPGES2 GST_N fam 99.0 4.2E-09 9E-14 65.1 8.2 62 48-109 1-74 (77)
35 cd03037 GST_N_GRX2 GST_N famil 98.9 9.3E-09 2E-13 62.6 7.2 59 50-108 2-70 (71)
36 cd03041 GST_N_2GST_N GST_N fam 98.8 2.8E-08 6E-13 61.7 7.7 61 49-109 2-75 (77)
37 TIGR00411 redox_disulf_1 small 98.8 1.5E-08 3.3E-13 62.7 6.5 53 48-100 2-68 (82)
38 cd00570 GST_N_family Glutathio 98.8 3.4E-08 7.3E-13 58.1 7.6 58 50-107 2-70 (71)
39 TIGR00412 redox_disulf_2 small 98.7 3.9E-08 8.5E-13 61.3 6.2 49 48-97 2-60 (76)
40 PF04908 SH3BGR: SH3-binding, 98.7 8.2E-08 1.8E-12 63.2 7.6 70 48-117 2-97 (99)
41 PHA02125 thioredoxin-like prot 98.7 8.3E-08 1.8E-12 59.5 6.1 48 49-97 2-56 (75)
42 cd03059 GST_N_SspA GST_N famil 98.6 3.6E-07 7.8E-12 55.4 8.2 61 49-109 1-71 (73)
43 cd03060 GST_N_Omega_like GST_N 98.6 3.9E-07 8.5E-12 55.5 7.9 57 50-106 2-69 (71)
44 cd02975 PfPDO_like_N Pyrococcu 98.6 4E-07 8.6E-12 60.7 8.0 54 39-92 15-81 (113)
45 cd03036 ArsC_like Arsenate Red 98.6 1.8E-07 3.9E-12 62.4 6.3 33 49-81 1-33 (111)
46 PRK15317 alkyl hydroperoxide r 98.6 2.2E-07 4.7E-12 76.1 7.7 94 5-98 74-181 (517)
47 cd03055 GST_N_Omega GST_N fami 98.6 6.6E-07 1.4E-11 57.1 8.2 62 46-107 16-88 (89)
48 TIGR03140 AhpF alkyl hydropero 98.6 2.6E-07 5.5E-12 75.7 7.7 94 5-98 75-182 (515)
49 PRK01655 spxA transcriptional 98.5 4.3E-07 9.4E-12 62.3 6.9 33 49-81 2-34 (131)
50 cd03051 GST_N_GTT2_like GST_N 98.5 9.6E-07 2.1E-11 53.3 7.2 58 50-107 2-73 (74)
51 TIGR03143 AhpF_homolog putativ 98.5 5.2E-07 1.1E-11 74.6 7.6 93 5-97 434-540 (555)
52 PF13417 GST_N_3: Glutathione 98.5 1.4E-06 3E-11 53.7 7.5 59 51-109 1-69 (75)
53 cd03045 GST_N_Delta_Epsilon GS 98.5 1.9E-06 4.2E-11 52.4 8.0 60 49-108 1-73 (74)
54 TIGR02187 GlrX_arch Glutaredox 98.5 8.2E-07 1.8E-11 65.2 7.4 67 29-95 117-195 (215)
55 cd02977 ArsC_family Arsenate R 98.4 4.3E-07 9.3E-12 59.6 4.6 33 49-81 1-33 (105)
56 cd03054 GST_N_Metaxin GST_N fa 98.4 3.4E-06 7.5E-11 51.3 8.0 55 55-109 14-71 (72)
57 PF05768 DUF836: Glutaredoxin- 98.4 3.6E-06 7.8E-11 53.0 7.7 47 48-94 1-57 (81)
58 cd03032 ArsC_Spx Arsenate Redu 98.3 2E-06 4.4E-11 57.5 6.7 33 49-81 2-34 (115)
59 PRK12559 transcriptional regul 98.3 2.7E-06 5.9E-11 58.4 6.8 33 49-81 2-34 (131)
60 cd02954 DIM1 Dim1 family; Dim1 98.3 3.7E-06 7.9E-11 56.7 7.2 52 47-98 16-82 (114)
61 PRK13344 spxA transcriptional 98.3 2.9E-06 6.3E-11 58.4 6.8 32 49-80 2-33 (132)
62 KOG3029 Glutathione S-transfer 98.3 3.3E-06 7.1E-11 64.9 7.5 70 37-106 78-156 (370)
63 cd03056 GST_N_4 GST_N family, 98.3 9.1E-06 2E-10 49.0 7.9 58 50-107 2-72 (73)
64 TIGR01295 PedC_BrcD bacterioci 98.3 7.2E-06 1.6E-10 55.5 8.1 50 49-98 27-104 (122)
65 PF13192 Thioredoxin_3: Thiore 98.2 7.1E-06 1.5E-10 50.9 6.2 49 48-97 2-60 (76)
66 cd03035 ArsC_Yffb Arsenate Red 98.2 5.5E-06 1.2E-10 54.8 5.9 33 49-81 1-33 (105)
67 cd03080 GST_N_Metaxin_like GST 98.2 2.4E-05 5.2E-10 48.0 8.4 61 49-109 2-72 (75)
68 TIGR01617 arsC_related transcr 98.2 2.9E-06 6.4E-11 56.8 4.4 33 49-81 1-33 (117)
69 cd02947 TRX_family TRX family; 98.2 1.7E-05 3.7E-10 48.5 7.6 52 46-97 11-76 (93)
70 cd02949 TRX_NTR TRX domain, no 98.2 1.4E-05 3E-10 51.3 7.2 51 48-98 16-81 (97)
71 COG4545 Glutaredoxin-related p 98.1 6.4E-06 1.4E-10 51.5 5.2 54 50-104 5-82 (85)
72 cd03058 GST_N_Tau GST_N family 98.1 3.1E-05 6.7E-10 47.2 8.1 61 49-109 1-72 (74)
73 PF00085 Thioredoxin: Thioredo 98.1 6.2E-05 1.4E-09 47.7 8.9 64 33-97 6-84 (103)
74 cd02985 TRX_CDSP32 TRX family, 98.1 3.6E-05 7.8E-10 50.1 7.8 64 34-97 4-84 (103)
75 cd03033 ArsC_15kD Arsenate Red 98.1 2.1E-05 4.6E-10 52.7 6.8 33 48-80 1-33 (113)
76 cd02956 ybbN ybbN protein fami 98.1 1.7E-05 3.8E-10 50.3 6.1 60 38-97 5-79 (96)
77 cd03053 GST_N_Phi GST_N family 98.0 8.9E-05 1.9E-09 45.2 8.7 61 49-109 2-75 (76)
78 cd03052 GST_N_GDAP1 GST_N fami 98.0 6.1E-05 1.3E-09 46.3 7.6 59 49-107 1-72 (73)
79 PRK10877 protein disulfide iso 97.9 3.8E-05 8.3E-10 57.3 6.8 25 46-70 108-132 (232)
80 PTZ00051 thioredoxin; Provisio 97.9 7.6E-05 1.6E-09 47.4 7.2 51 48-98 21-85 (98)
81 cd03049 GST_N_3 GST_N family, 97.9 9.3E-05 2E-09 44.9 7.0 58 50-107 2-72 (73)
82 cd03061 GST_N_CLIC GST_N famil 97.9 9.6E-05 2.1E-09 47.9 7.3 55 55-109 20-84 (91)
83 cd02989 Phd_like_TxnDC9 Phosdu 97.9 0.00011 2.3E-09 48.9 7.8 52 47-98 24-89 (113)
84 cd02953 DsbDgamma DsbD gamma f 97.9 3.5E-05 7.6E-10 49.8 5.2 45 48-92 14-78 (104)
85 TIGR01068 thioredoxin thioredo 97.9 0.00019 4.2E-09 45.1 8.5 51 47-97 16-81 (101)
86 KOG0910 Thioredoxin-like prote 97.9 1.7E-05 3.7E-10 55.7 3.8 65 33-97 47-128 (150)
87 PHA02278 thioredoxin-like prot 97.9 0.00018 3.9E-09 47.4 8.4 52 46-97 15-85 (103)
88 cd02948 TRX_NDPK TRX domain, T 97.8 0.00017 3.7E-09 46.7 8.2 52 46-97 18-84 (102)
89 cd02984 TRX_PICOT TRX domain, 97.8 9.9E-05 2.1E-09 46.7 6.9 63 35-97 4-81 (97)
90 cd02994 PDI_a_TMX PDIa family, 97.8 7.6E-05 1.6E-09 47.8 6.4 54 42-95 13-82 (101)
91 TIGR02182 GRXB Glutaredoxin, G 97.8 8.3E-05 1.8E-09 54.1 7.0 60 50-109 1-70 (209)
92 PRK10387 glutaredoxin 2; Provi 97.8 0.0001 2.2E-09 53.0 7.3 61 49-109 1-71 (210)
93 COG0678 AHP1 Peroxiredoxin [Po 97.8 4.7E-06 1E-10 58.6 0.1 26 1-28 125-151 (165)
94 COG3118 Thioredoxin domain-con 97.8 3.5E-05 7.6E-10 59.5 4.9 69 33-101 30-114 (304)
95 TIGR02187 GlrX_arch Glutaredox 97.8 0.00015 3.2E-09 53.2 7.8 57 40-96 14-89 (215)
96 cd03042 GST_N_Zeta GST_N famil 97.8 0.00025 5.5E-09 42.5 7.4 58 50-107 2-72 (73)
97 PRK09381 trxA thioredoxin; Pro 97.7 0.00029 6.3E-09 45.7 7.7 54 45-98 21-89 (109)
98 cd02959 ERp19 Endoplasmic reti 97.7 0.0002 4.4E-09 47.9 7.1 64 35-98 7-91 (117)
99 PF14595 Thioredoxin_9: Thiore 97.7 6.3E-05 1.4E-09 51.5 4.5 66 33-98 29-112 (129)
100 cd02963 TRX_DnaJ TRX domain, D 97.7 0.0002 4.3E-09 47.2 6.8 52 46-97 25-92 (111)
101 cd03038 GST_N_etherase_LigE GS 97.7 0.00032 7E-09 43.7 7.3 55 55-109 14-81 (84)
102 cd02986 DLP Dim1 family, Dim1- 97.7 0.00024 5.2E-09 47.9 6.9 63 35-97 4-81 (114)
103 cd01659 TRX_superfamily Thiore 97.7 0.00011 2.3E-09 41.0 4.6 46 49-94 1-61 (69)
104 cd02999 PDI_a_ERp44_like PDIa 97.7 0.00027 5.9E-09 45.9 6.8 48 45-92 18-78 (100)
105 TIGR01616 nitro_assoc nitrogen 97.7 0.00027 5.8E-09 48.3 7.0 33 48-80 2-34 (126)
106 TIGR01126 pdi_dom protein disu 97.6 0.00036 7.8E-09 44.1 7.2 48 45-92 13-75 (102)
107 cd03039 GST_N_Sigma_like GST_N 97.6 0.00054 1.2E-08 41.4 7.6 59 50-108 2-71 (72)
108 cd02962 TMX2 TMX2 family; comp 97.6 0.00034 7.4E-09 49.2 7.5 51 48-98 50-122 (152)
109 cd03076 GST_N_Pi GST_N family, 97.6 0.00066 1.4E-08 41.4 7.9 61 49-109 2-72 (73)
110 cd02957 Phd_like Phosducin (Ph 97.6 0.00036 7.7E-09 46.0 7.2 53 48-100 27-92 (113)
111 cd03034 ArsC_ArsC Arsenate Red 97.6 0.0003 6.6E-09 46.8 6.8 32 49-80 1-32 (112)
112 cd02965 HyaE HyaE family; HyaE 97.6 0.00024 5.1E-09 47.7 6.0 57 44-100 26-99 (111)
113 PRK10996 thioredoxin 2; Provis 97.6 0.00049 1.1E-08 47.3 7.7 52 46-97 53-119 (139)
114 cd03003 PDI_a_ERdj5_N PDIa fam 97.6 0.00027 5.8E-09 45.4 6.0 50 47-96 20-84 (101)
115 PF13409 GST_N_2: Glutathione 97.6 0.00064 1.4E-08 41.2 7.2 54 56-109 1-69 (70)
116 PF13098 Thioredoxin_2: Thiore 97.5 0.00024 5.1E-09 46.2 5.4 24 46-69 6-29 (112)
117 cd02987 Phd_like_Phd Phosducin 97.5 0.00059 1.3E-08 48.9 7.7 51 48-98 86-149 (175)
118 cd03050 GST_N_Theta GST_N fami 97.5 0.0013 2.8E-08 40.1 8.3 61 49-109 1-74 (76)
119 PRK09481 sspA stringent starva 97.5 0.00083 1.8E-08 48.7 8.5 62 48-109 10-81 (211)
120 cd03048 GST_N_Ure2p_like GST_N 97.5 0.0012 2.6E-08 40.7 8.1 60 49-109 2-77 (81)
121 cd02996 PDI_a_ERp44 PDIa famil 97.5 0.00042 9.1E-09 45.1 6.2 48 48-95 21-89 (108)
122 cd03002 PDI_a_MPD1_like PDI fa 97.5 0.00043 9.4E-09 44.6 6.2 57 35-92 9-80 (109)
123 cd03004 PDI_a_ERdj5_C PDIa fam 97.5 0.00049 1.1E-08 44.2 6.3 48 47-94 21-83 (104)
124 cd02950 TxlA TRX-like protein 97.5 0.00046 1E-08 47.7 6.5 50 48-97 23-90 (142)
125 cd02952 TRP14_like Human TRX-r 97.5 0.00051 1.1E-08 46.5 6.4 59 34-92 10-96 (119)
126 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00044 9.6E-09 49.9 6.4 24 46-69 78-101 (197)
127 cd03001 PDI_a_P5 PDIa family, 97.4 0.00091 2E-08 42.5 6.7 45 48-92 21-78 (103)
128 cd03000 PDI_a_TMX3 PDIa family 97.4 0.00046 9.9E-09 44.6 5.2 55 38-92 7-78 (104)
129 cd02988 Phd_like_VIAF Phosduci 97.4 0.00069 1.5E-08 49.3 6.6 50 49-98 106-166 (192)
130 PTZ00062 glutaredoxin; Provisi 97.4 0.00064 1.4E-08 50.1 6.2 51 48-98 20-76 (204)
131 cd02961 PDI_a_family Protein D 97.3 0.0017 3.7E-08 40.3 7.3 46 47-92 17-77 (101)
132 cd02951 SoxW SoxW family; SoxW 97.3 0.00083 1.8E-08 44.8 6.1 29 39-67 5-36 (125)
133 cd02993 PDI_a_APS_reductase PD 97.3 0.0012 2.5E-08 43.2 6.7 47 46-92 22-84 (109)
134 PRK10026 arsenate reductase; P 97.3 0.00052 1.1E-08 47.8 5.0 34 47-80 2-35 (141)
135 cd03005 PDI_a_ERp46 PDIa famil 97.3 0.001 2.2E-08 42.3 5.9 51 47-97 18-86 (102)
136 TIGR00014 arsC arsenate reduct 97.3 0.00045 9.7E-09 46.2 4.4 33 49-81 1-33 (114)
137 PRK10853 putative reductase; P 97.2 0.00052 1.1E-08 46.3 4.3 32 49-80 2-33 (118)
138 COG1393 ArsC Arsenate reductas 97.2 0.00067 1.5E-08 45.8 4.7 33 48-80 2-34 (117)
139 cd02955 SSP411 TRX domain, SSP 97.2 0.0023 5E-08 43.5 7.4 58 40-97 8-94 (124)
140 cd02997 PDI_a_PDIR PDIa family 97.2 0.0019 4E-08 41.1 6.6 51 47-97 19-88 (104)
141 PRK13728 conjugal transfer pro 97.2 0.00095 2E-08 48.4 5.5 33 48-80 72-108 (181)
142 cd02998 PDI_a_ERp38 PDIa famil 97.2 0.0014 3E-08 41.6 5.7 46 47-92 20-81 (105)
143 KOG4023 Uncharacterized conser 97.2 0.0012 2.7E-08 43.3 5.4 70 48-117 3-97 (108)
144 cd03044 GST_N_EF1Bgamma GST_N 97.2 0.0033 7.2E-08 38.3 7.0 59 50-108 2-73 (75)
145 PLN00410 U5 snRNP protein, DIM 97.1 0.0018 3.8E-08 45.2 6.2 63 33-95 11-89 (142)
146 KOG0907 Thioredoxin [Posttrans 97.1 0.0016 3.4E-08 43.2 5.3 48 49-96 25-86 (106)
147 cd03078 GST_N_Metaxin1_like GS 97.1 0.0049 1.1E-07 37.9 7.2 55 55-109 14-71 (73)
148 cd03006 PDI_a_EFP1_N PDIa fami 97.1 0.0013 2.9E-08 43.9 4.9 49 47-95 31-95 (113)
149 TIGR00862 O-ClC intracellular 97.1 0.006 1.3E-07 45.8 8.9 55 55-109 17-81 (236)
150 PF13728 TraF: F plasmid trans 97.1 0.0022 4.9E-08 47.4 6.5 59 34-92 109-189 (215)
151 PF13899 Thioredoxin_7: Thiore 97.0 0.0009 2E-08 41.7 3.7 58 35-92 5-79 (82)
152 cd02995 PDI_a_PDI_a'_C PDIa fa 97.0 0.0023 4.9E-08 40.6 5.6 46 47-92 20-79 (104)
153 cd03047 GST_N_2 GST_N family, 97.0 0.0085 1.9E-07 36.1 7.9 58 50-107 2-72 (73)
154 cd03023 DsbA_Com1_like DsbA fa 97.0 0.0014 3E-08 44.3 4.6 24 83-106 126-149 (154)
155 PTZ00443 Thioredoxin domain-co 97.0 0.0024 5.1E-08 47.7 6.1 52 46-97 53-119 (224)
156 PRK15113 glutathione S-transfe 97.0 0.0087 1.9E-07 43.4 9.0 63 47-109 4-81 (214)
157 TIGR02740 TraF-like TraF-like 97.0 0.0029 6.2E-08 48.4 6.5 55 38-92 159-235 (271)
158 cd03057 GST_N_Beta GST_N famil 96.8 0.013 2.9E-07 35.5 7.6 58 50-108 2-73 (77)
159 cd03046 GST_N_GTT1_like GST_N 96.8 0.015 3.2E-07 35.0 7.8 59 50-109 2-73 (76)
160 PLN02473 glutathione S-transfe 96.8 0.01 2.2E-07 42.7 8.0 60 49-108 3-75 (214)
161 cd02960 AGR Anterior Gradient 96.8 0.0058 1.3E-07 42.0 6.2 34 35-68 11-46 (130)
162 PF06764 DUF1223: Protein of u 96.7 0.0019 4.1E-08 47.5 3.8 53 49-101 2-86 (202)
163 PF03960 ArsC: ArsC family; I 96.7 0.0042 9.2E-08 40.9 5.2 30 52-81 1-30 (110)
164 PRK11657 dsbG disulfide isomer 96.7 0.0047 1E-07 46.6 6.1 23 47-69 119-141 (251)
165 KOG0406 Glutathione S-transfer 96.7 0.011 2.3E-07 44.4 7.8 63 47-109 8-81 (231)
166 PLN02378 glutathione S-transfe 96.7 0.0091 2E-07 43.4 7.2 55 55-109 18-82 (213)
167 cd03008 TryX_like_RdCVF Trypar 96.7 0.011 2.5E-07 41.2 7.2 24 46-69 26-49 (146)
168 cd02992 PDI_a_QSOX PDIa family 96.7 0.0063 1.4E-07 40.3 5.6 57 35-92 10-84 (114)
169 PLN02817 glutathione dehydroge 96.6 0.012 2.7E-07 44.7 7.4 72 34-109 54-135 (265)
170 PF13462 Thioredoxin_4: Thiore 96.6 0.01 2.3E-07 40.5 6.4 22 83-104 133-154 (162)
171 TIGR02739 TraF type-F conjugat 96.5 0.01 2.2E-07 45.2 6.4 59 34-92 139-219 (256)
172 cd03079 GST_N_Metaxin2 GST_N f 96.5 0.026 5.5E-07 35.1 7.2 55 55-109 15-73 (74)
173 cd03043 GST_N_1 GST_N family, 96.5 0.034 7.4E-07 33.7 7.7 54 54-107 7-72 (73)
174 PRK13703 conjugal pilus assemb 96.4 0.013 2.9E-07 44.4 6.5 58 35-92 133-212 (248)
175 COG2999 GrxB Glutaredoxin 2 [P 96.4 0.0068 1.5E-07 44.1 4.6 59 51-109 3-71 (215)
176 TIGR00424 APS_reduc 5'-adenyly 96.3 0.015 3.3E-07 47.7 6.9 48 47-94 373-438 (463)
177 cd03077 GST_N_Alpha GST_N fami 96.3 0.06 1.3E-06 33.1 8.0 60 49-108 2-73 (79)
178 TIGR00385 dsbE periplasmic pro 96.3 0.024 5.3E-07 40.0 6.9 25 46-70 64-88 (173)
179 cd03010 TlpA_like_DsbE TlpA-li 96.2 0.03 6.5E-07 37.0 6.8 25 46-70 26-50 (127)
180 KOG4244 Failed axon connection 96.2 0.034 7.3E-07 42.6 7.5 68 41-108 38-115 (281)
181 PLN02309 5'-adenylylsulfate re 96.1 0.018 4E-07 47.1 6.4 47 46-92 366-428 (457)
182 COG3634 AhpF Alkyl hydroperoxi 96.1 0.046 1E-06 44.0 8.2 102 5-109 74-196 (520)
183 cd03009 TryX_like_TryX_NRX Try 96.1 0.028 6.2E-07 37.4 6.2 24 46-69 19-42 (131)
184 TIGR02738 TrbB type-F conjugat 96.0 0.018 3.9E-07 40.5 5.3 26 45-70 50-75 (153)
185 PRK15412 thiol:disulfide inter 96.0 0.036 7.7E-07 39.6 6.7 24 47-70 70-93 (185)
186 PRK00293 dipZ thiol:disulfide 95.9 0.035 7.5E-07 46.6 7.0 64 33-96 460-547 (571)
187 TIGR01130 ER_PDI_fam protein d 95.9 0.027 5.8E-07 44.7 6.2 49 48-96 21-87 (462)
188 TIGR01262 maiA maleylacetoacet 95.8 0.041 8.8E-07 39.3 6.6 59 51-109 2-74 (210)
189 cd03065 PDI_b_Calsequestrin_N 95.8 0.028 6.1E-07 38.0 5.3 51 48-98 29-101 (120)
190 COG2143 Thioredoxin-related pr 95.8 0.05 1.1E-06 38.9 6.5 35 35-69 30-66 (182)
191 COG5494 Predicted thioredoxin/ 95.8 0.03 6.6E-07 41.8 5.6 62 46-107 10-84 (265)
192 PF13905 Thioredoxin_8: Thiore 95.7 0.037 8E-07 34.7 5.3 23 48-70 4-26 (95)
193 PTZ00102 disulphide isomerase; 95.7 0.019 4.1E-07 46.1 4.7 46 47-92 377-437 (477)
194 cd02982 PDI_b'_family Protein 95.6 0.024 5.1E-07 36.0 4.2 47 46-92 13-74 (103)
195 PTZ00102 disulphide isomerase; 95.6 0.044 9.6E-07 44.0 6.5 49 47-95 51-117 (477)
196 PRK10357 putative glutathione 95.6 0.072 1.6E-06 38.0 6.9 59 50-108 2-71 (202)
197 KOG3425 Uncharacterized conser 95.4 0.03 6.5E-07 38.2 4.2 37 33-69 12-57 (128)
198 KOG4277 Uncharacterized conser 95.4 0.01 2.2E-07 46.6 2.3 67 31-97 28-112 (468)
199 PRK03147 thiol-disulfide oxido 95.3 0.15 3.3E-06 35.2 7.6 25 45-69 61-85 (173)
200 KOG0908 Thioredoxin-like prote 95.2 0.047 1E-06 41.7 5.2 62 36-97 9-87 (288)
201 PF10568 Tom37: Outer mitochon 95.1 0.14 3.1E-06 31.5 6.4 51 57-107 14-71 (72)
202 PHA03075 glutaredoxin-like pro 95.1 0.039 8.5E-07 37.3 4.0 33 47-79 3-35 (123)
203 PF08534 Redoxin: Redoxin; In 95.1 0.12 2.6E-06 34.8 6.6 24 47-70 30-54 (146)
204 COG0625 Gst Glutathione S-tran 95.0 0.15 3.3E-06 36.6 7.3 61 50-110 2-75 (211)
205 PLN02395 glutathione S-transfe 95.0 0.24 5.3E-06 35.5 8.3 60 49-109 3-75 (215)
206 TIGR02661 MauD methylamine deh 94.8 0.14 3E-06 36.8 6.5 22 48-69 77-98 (189)
207 KOG1422 Intracellular Cl- chan 94.8 0.16 3.5E-06 37.7 6.8 54 56-109 20-83 (221)
208 KOG0190 Protein disulfide isom 94.7 0.035 7.6E-07 45.9 3.6 46 47-92 386-444 (493)
209 PF06110 DUF953: Eukaryotic pr 94.5 0.087 1.9E-06 35.7 4.5 58 35-92 7-95 (119)
210 PRK14018 trifunctional thiored 94.4 0.12 2.6E-06 43.1 6.1 23 48-70 59-81 (521)
211 COG3019 Predicted metal-bindin 94.3 0.29 6.4E-06 34.2 6.9 67 45-111 24-104 (149)
212 cd03011 TlpA_like_ScsD_MtbDsbE 94.3 0.11 2.5E-06 33.8 4.8 25 46-70 21-45 (123)
213 PRK10954 periplasmic protein d 94.1 0.26 5.7E-06 35.8 6.8 21 45-65 37-57 (207)
214 cd02967 mauD Methylamine utili 94.0 0.051 1.1E-06 35.0 2.6 25 46-70 22-46 (114)
215 PRK11752 putative S-transferas 94.0 0.46 1E-05 35.8 8.0 66 43-109 39-127 (264)
216 PRK13972 GSH-dependent disulfi 93.9 0.54 1.2E-05 33.9 8.0 60 49-109 2-81 (215)
217 cd02958 UAS UAS family; UAS is 93.9 0.32 6.9E-06 31.8 6.2 58 35-92 5-82 (114)
218 TIGR01130 ER_PDI_fam protein d 93.7 0.15 3.3E-06 40.4 5.2 46 47-92 366-425 (462)
219 PF02798 GST_N: Glutathione S- 93.2 0.87 1.9E-05 27.6 7.0 59 48-108 2-75 (76)
220 TIGR01626 ytfJ_HI0045 conserve 93.1 0.54 1.2E-05 34.1 6.8 29 43-71 57-85 (184)
221 smart00594 UAS UAS domain. 92.7 0.73 1.6E-05 30.6 6.7 60 33-92 13-92 (122)
222 cd02966 TlpA_like_family TlpA- 92.5 0.14 3.1E-06 31.9 2.9 26 45-70 19-44 (116)
223 cd02972 DsbA_family DsbA famil 92.2 0.13 2.9E-06 31.3 2.4 22 49-70 1-22 (98)
224 KOG0190 Protein disulfide isom 92.2 0.36 7.8E-06 40.1 5.4 72 38-109 33-130 (493)
225 cd02964 TryX_like_family Trypa 91.7 0.24 5.2E-06 33.1 3.3 24 46-69 18-41 (132)
226 cd03012 TlpA_like_DipZ_like Tl 91.6 0.22 4.8E-06 33.0 3.0 25 46-70 24-48 (126)
227 KOG2501 Thioredoxin, nucleored 91.4 0.73 1.6E-05 32.7 5.6 37 43-79 30-74 (157)
228 cd03019 DsbA_DsbA DsbA family, 91.3 0.2 4.4E-06 34.6 2.8 26 45-70 15-40 (178)
229 COG0526 TrxA Thiol-disulfide i 91.3 0.19 4E-06 30.7 2.3 43 53-95 40-100 (127)
230 COG1651 DsbG Protein-disulfide 91.0 0.44 9.6E-06 35.0 4.5 23 83-105 212-234 (244)
231 PTZ00057 glutathione s-transfe 90.8 2.5 5.5E-05 30.2 8.2 62 48-109 4-81 (205)
232 cd03007 PDI_a_ERp29_N PDIa fam 90.4 2.6 5.7E-05 28.3 7.4 48 48-95 21-91 (116)
233 COG5429 Uncharacterized secret 90.3 0.29 6.4E-06 37.0 2.9 26 48-73 44-69 (261)
234 KOG0867 Glutathione S-transfer 90.2 2.1 4.5E-05 31.6 7.4 62 48-109 2-76 (226)
235 cd03075 GST_N_Mu GST_N family, 89.8 3.2 7E-05 25.5 7.9 58 51-108 3-79 (82)
236 PF00578 AhpC-TSA: AhpC/TSA fa 89.6 0.54 1.2E-05 30.4 3.5 28 42-69 22-50 (124)
237 TIGR03143 AhpF_homolog putativ 88.7 1.3 2.9E-05 36.8 6.0 57 36-92 357-425 (555)
238 TIGR02540 gpx7 putative glutat 87.8 0.59 1.3E-05 32.0 2.9 17 49-65 26-42 (153)
239 PF07315 DUF1462: Protein of u 87.3 2.7 5.8E-05 27.2 5.4 57 50-106 1-88 (93)
240 cd02974 AhpF_NTD_N Alkyl hydro 87.0 2.4 5.2E-05 27.3 5.2 57 35-92 9-66 (94)
241 cd00340 GSH_Peroxidase Glutath 86.7 0.71 1.5E-05 31.6 2.8 23 47-70 24-46 (152)
242 PRK10542 glutathionine S-trans 86.6 4.5 9.8E-05 28.4 7.0 59 50-109 2-75 (201)
243 cd02970 PRX_like2 Peroxiredoxi 86.4 1.1 2.3E-05 29.9 3.5 24 47-70 25-49 (149)
244 PF06953 ArsD: Arsenical resis 85.7 2.2 4.9E-05 29.0 4.7 19 83-101 69-89 (123)
245 PF11009 DUF2847: Protein of u 85.5 7.2 0.00016 25.8 7.0 58 40-97 13-91 (105)
246 KOG3414 Component of the U4/U6 85.4 2.9 6.3E-05 28.9 5.1 65 33-97 11-90 (142)
247 PTZ00256 glutathione peroxidas 85.3 0.87 1.9E-05 32.4 2.7 19 50-68 46-64 (183)
248 KOG0191 Thioredoxin/protein di 85.1 1.2 2.7E-05 35.2 3.8 48 45-92 47-107 (383)
249 PTZ00056 glutathione peroxidas 85.0 1 2.2E-05 32.7 3.0 25 46-70 40-64 (199)
250 PF02114 Phosducin: Phosducin; 83.7 5.4 0.00012 30.5 6.6 52 49-100 150-214 (265)
251 PF03190 Thioredox_DsbH: Prote 83.5 2.8 6.1E-05 29.9 4.6 49 49-97 41-116 (163)
252 cd02968 SCO SCO (an acronym fo 83.1 1.3 2.9E-05 29.3 2.8 24 46-69 23-47 (142)
253 cd03018 PRX_AhpE_like Peroxire 82.8 1.8 3.8E-05 29.0 3.3 21 49-69 32-53 (149)
254 PLN02399 phospholipid hydroper 82.8 1.6 3.4E-05 32.9 3.2 25 45-69 99-123 (236)
255 PLN02412 probable glutathione 82.6 1.5 3.3E-05 30.7 3.0 22 47-68 31-52 (167)
256 PF04134 DUF393: Protein of un 81.7 6.2 0.00013 25.5 5.5 59 51-109 1-76 (114)
257 KOG0868 Glutathione S-transfer 81.4 3.6 7.9E-05 30.2 4.6 58 51-110 10-81 (217)
258 PRK15317 alkyl hydroperoxide r 80.0 3.8 8.2E-05 33.8 4.9 57 35-92 9-66 (517)
259 cd02969 PRX_like1 Peroxiredoxi 79.9 2.4 5.2E-05 29.4 3.2 25 46-70 26-50 (171)
260 KOG0912 Thiol-disulfide isomer 79.0 4.1 8.8E-05 32.3 4.4 49 49-97 17-85 (375)
261 PF11760 CbiG_N: Cobalamin syn 78.9 3 6.4E-05 26.6 3.1 67 38-107 3-69 (84)
262 cd02971 PRX_family Peroxiredox 78.7 2.3 5E-05 28.0 2.7 22 48-69 25-47 (140)
263 cd03022 DsbA_HCCA_Iso DsbA fam 77.8 2.9 6.2E-05 29.2 3.1 24 83-106 164-187 (192)
264 PF01323 DSBA: DSBA-like thior 77.7 2.9 6.3E-05 29.1 3.1 23 48-70 1-23 (193)
265 COG4837 Uncharacterized protei 77.3 18 0.00038 23.8 6.5 60 45-104 3-93 (106)
266 cd03017 PRX_BCP Peroxiredoxin 77.0 3.8 8.1E-05 27.0 3.4 19 49-67 27-46 (140)
267 cd05295 MDH_like Malate dehydr 76.2 6.2 0.00013 32.5 5.0 56 54-109 1-83 (452)
268 TIGR03137 AhpC peroxiredoxin. 75.4 5.4 0.00012 28.4 4.0 22 46-67 31-54 (187)
269 cd03014 PRX_Atyp2cys Peroxired 75.3 3.2 7E-05 27.7 2.7 26 45-70 26-52 (143)
270 KOG0191 Thioredoxin/protein di 74.8 6.5 0.00014 31.1 4.7 48 45-92 162-224 (383)
271 TIGR03140 AhpF alkyl hydropero 74.4 7.5 0.00016 32.0 5.1 57 35-92 9-67 (515)
272 PF11287 DUF3088: Protein of u 72.4 12 0.00026 25.1 4.8 51 57-107 24-103 (112)
273 cd03015 PRX_Typ2cys Peroxiredo 72.1 4 8.7E-05 28.5 2.7 23 47-69 30-54 (173)
274 PLN02919 haloacid dehalogenase 71.6 3.7 8.1E-05 37.1 2.9 26 45-70 420-445 (1057)
275 KOG1695 Glutathione S-transfer 71.5 36 0.00078 25.1 7.6 60 49-108 4-73 (206)
276 PF01323 DSBA: DSBA-like thior 71.1 4.4 9.6E-05 28.2 2.7 24 83-106 164-188 (193)
277 TIGR03759 conj_TIGR03759 integ 70.1 25 0.00055 25.9 6.4 28 44-71 107-134 (200)
278 PRK05788 cobalamin biosynthesi 68.8 12 0.00027 29.2 5.0 71 34-107 39-109 (315)
279 PF10865 DUF2703: Domain of un 65.7 15 0.00034 24.8 4.3 42 56-97 14-72 (120)
280 PRK11509 hydrogenase-1 operon 64.3 17 0.00036 25.0 4.3 50 49-98 37-105 (132)
281 COG1651 DsbG Protein-disulfide 63.6 8.5 0.00019 28.1 3.0 25 46-70 85-109 (244)
282 cd03025 DsbA_FrnE_like DsbA fa 62.7 5.7 0.00012 27.7 1.9 23 48-70 2-24 (193)
283 PRK10606 btuE putative glutath 62.2 7.8 0.00017 27.9 2.5 18 45-62 25-42 (183)
284 KOG4420 Uncharacterized conser 61.5 13 0.00028 28.9 3.7 61 49-109 27-100 (325)
285 TIGR01162 purE phosphoribosyla 61.1 24 0.00052 25.0 4.8 60 49-108 3-100 (156)
286 KOG3171 Conserved phosducin-li 60.9 34 0.00073 26.0 5.7 64 54-117 168-248 (273)
287 PF03227 GILT: Gamma interfero 60.6 6.9 0.00015 25.5 1.9 15 48-62 2-16 (108)
288 KOG1672 ATP binding protein [P 59.8 68 0.0015 23.8 7.0 70 34-103 72-159 (211)
289 COG0041 PurE Phosphoribosylcar 59.5 32 0.00069 24.5 5.1 58 49-106 7-102 (162)
290 cd03019 DsbA_DsbA DsbA family, 59.2 10 0.00022 25.9 2.6 17 83-99 140-156 (178)
291 PRK00522 tpx lipid hydroperoxi 59.1 11 0.00023 26.3 2.7 23 47-69 46-69 (167)
292 COG4232 Thiol:disulfide interc 57.6 23 0.0005 30.2 4.8 55 38-92 467-540 (569)
293 cd03024 DsbA_FrnE DsbA family, 57.1 12 0.00027 26.2 2.8 24 83-106 172-196 (201)
294 PF09413 DUF2007: Domain of un 56.4 8.1 0.00018 22.6 1.5 47 49-95 1-53 (67)
295 KOG3028 Translocase of outer m 55.2 1E+02 0.0022 24.4 7.7 61 48-109 3-73 (313)
296 PF02966 DIM1: Mitosis protein 54.5 54 0.0012 22.7 5.5 65 33-97 8-87 (133)
297 PF04566 RNA_pol_Rpb2_4: RNA p 53.1 13 0.00029 22.1 2.1 25 90-114 1-32 (63)
298 PRK09437 bcp thioredoxin-depen 52.0 22 0.00048 23.9 3.4 20 46-65 30-51 (154)
299 PF15643 Tox-PL-2: Papain fold 51.7 59 0.0013 21.4 5.1 59 35-98 4-73 (100)
300 TIGR01689 EcbF-BcbF capsule bi 51.2 58 0.0013 22.0 5.3 65 32-97 25-102 (126)
301 COG2761 FrnE Predicted dithiol 49.3 13 0.00027 28.0 1.9 25 46-70 5-29 (225)
302 PRK10382 alkyl hydroperoxide r 48.2 32 0.00068 24.7 3.8 20 48-67 33-54 (187)
303 COG3011 Predicted thiol-disulf 47.4 35 0.00076 23.7 3.7 27 45-71 6-32 (137)
304 cd03022 DsbA_HCCA_Iso DsbA fam 47.4 20 0.00043 24.8 2.6 22 49-70 1-22 (192)
305 PF07511 DUF1525: Protein of u 47.1 28 0.00061 23.4 3.1 24 83-106 80-104 (114)
306 TIGR03865 PQQ_CXXCW PQQ-depend 47.1 38 0.00082 23.6 4.0 29 45-73 115-143 (162)
307 PTZ00137 2-Cys peroxiredoxin; 46.9 31 0.00068 26.3 3.7 26 42-67 94-121 (261)
308 PRK13190 putative peroxiredoxi 46.7 18 0.00038 26.2 2.3 23 46-68 27-51 (202)
309 cd03016 PRX_1cys Peroxiredoxin 46.0 22 0.00048 25.6 2.7 23 47-69 26-50 (203)
310 cd03082 TRX_Fd_NuoE_W_FDH_beta 45.9 36 0.00078 20.6 3.3 28 83-110 43-72 (72)
311 KOG1734 Predicted RING-contain 45.9 12 0.00026 29.2 1.3 17 50-66 266-282 (328)
312 PF14237 DUF4339: Domain of un 45.1 20 0.00043 19.5 1.8 24 91-114 5-30 (45)
313 PRK15000 peroxidase; Provision 42.2 45 0.00098 24.0 3.9 24 45-68 33-58 (200)
314 PF13743 Thioredoxin_5: Thiore 42.1 28 0.00061 24.6 2.7 21 51-71 2-22 (176)
315 cd03013 PRX5_like Peroxiredoxi 41.9 47 0.001 22.8 3.8 19 45-63 28-48 (155)
316 TIGR03757 conj_TIGR03757 integ 41.9 34 0.00074 23.0 2.9 24 83-106 81-105 (113)
317 PF06053 DUF929: Domain of unk 41.6 19 0.00041 27.5 1.8 23 49-71 62-88 (249)
318 PF09673 TrbC_Ftype: Type-F co 41.0 1E+02 0.0022 20.2 5.6 65 30-95 7-80 (113)
319 cd01444 GlpE_ST GlpE sulfurtra 40.5 83 0.0018 18.9 4.8 38 35-73 45-82 (96)
320 KOG3027 Mitochondrial outer me 38.8 1E+02 0.0022 23.3 5.2 56 55-110 32-91 (257)
321 KOG0913 Thiol-disulfide isomer 37.1 8.9 0.00019 29.1 -0.5 56 40-95 34-105 (248)
322 PF14437 MafB19-deam: MafB19-l 35.8 1.5E+02 0.0034 20.7 5.7 41 37-77 89-132 (146)
323 cd03021 DsbA_GSTK DsbA family, 35.5 52 0.0011 23.6 3.3 22 48-69 2-23 (209)
324 cd03024 DsbA_FrnE DsbA family, 35.1 34 0.00073 23.9 2.2 21 49-69 1-21 (201)
325 PTZ00253 tryparedoxin peroxida 34.7 67 0.0015 22.9 3.8 21 47-67 37-59 (199)
326 PRK13599 putative peroxiredoxi 34.1 50 0.0011 24.2 3.1 22 46-67 28-51 (215)
327 PRK12311 rpsB 30S ribosomal pr 30.6 1.4E+02 0.0031 23.6 5.2 50 34-100 46-95 (326)
328 PF05673 DUF815: Protein of un 29.7 2.6E+02 0.0055 21.4 6.9 38 45-82 51-89 (249)
329 PF11399 DUF3192: Protein of u 28.9 43 0.00094 22.1 1.8 17 83-99 78-94 (102)
330 KOG1731 FAD-dependent sulfhydr 28.5 25 0.00055 30.0 0.7 46 47-92 59-122 (606)
331 PRK15320 transcriptional activ 28.0 2E+02 0.0044 21.7 5.3 39 57-95 30-82 (251)
332 KOG4700 Uncharacterized homolo 27.7 94 0.002 22.9 3.4 29 83-111 110-139 (207)
333 PF13364 BetaGal_dom4_5: Beta- 27.3 54 0.0012 21.4 2.0 19 83-101 60-78 (111)
334 cd01520 RHOD_YbbB Member of th 26.3 1.9E+02 0.0041 18.8 5.4 32 42-73 82-113 (128)
335 PF13896 Glyco_transf_49: Glyc 26.2 50 0.0011 25.7 2.0 36 35-70 178-216 (317)
336 PF10087 DUF2325: Uncharacteri 25.4 1.8E+02 0.0039 18.2 4.9 40 35-74 37-78 (97)
337 KOG0914 Thioredoxin-like prote 25.4 53 0.0011 25.0 1.9 26 49-74 148-173 (265)
338 cd02991 UAS_ETEA UAS family, E 25.2 2.1E+02 0.0044 18.8 6.7 55 35-92 5-82 (116)
339 cd06340 PBP1_ABC_ligand_bindin 25.2 2E+02 0.0044 21.8 5.2 47 29-75 51-98 (347)
340 TIGR02742 TrbC_Ftype type-F co 25.2 2.3E+02 0.0049 19.3 5.3 62 30-92 8-77 (130)
341 KOG3160 Gamma-interferon induc 25.2 48 0.001 24.8 1.6 18 46-63 40-57 (220)
342 PF15061 DUF4538: Domain of un 25.0 28 0.0006 20.7 0.3 25 3-27 2-33 (58)
343 cd00755 YgdL_like Family of ac 25.0 74 0.0016 23.7 2.6 20 54-73 153-172 (231)
344 PF03470 zf-XS: XS zinc finger 24.9 18 0.00039 20.1 -0.5 6 57-62 1-6 (43)
345 PF07908 D-aminoacyl_C: D-amin 24.6 61 0.0013 18.0 1.6 16 83-98 16-31 (48)
346 PF15616 TerY-C: TerY-C metal 24.4 20 0.00044 24.7 -0.5 16 51-66 74-89 (131)
347 PF14424 Toxin-deaminase: The 24.4 1.8E+02 0.0039 19.8 4.3 23 47-69 97-120 (133)
348 COG1553 DsrE Uncharacterized c 23.0 1.6E+02 0.0035 20.2 3.7 60 35-108 59-118 (126)
349 cd03081 TRX_Fd_NuoE_FDH_gamma 22.9 1.4E+02 0.0031 18.0 3.3 19 83-101 51-69 (80)
350 PF11008 DUF2846: Protein of u 22.7 73 0.0016 20.8 2.0 18 83-100 38-55 (117)
351 KOG0371 Serine/threonine prote 22.6 1.8E+02 0.004 22.7 4.3 48 57-114 39-86 (319)
352 cd02064 FAD_synthetase_N FAD s 22.6 2.8E+02 0.006 19.4 5.7 27 88-115 137-163 (180)
353 cd04911 ACT_AKiii-YclM-BS_1 AC 22.6 2E+02 0.0043 17.7 4.9 39 57-99 15-53 (76)
354 cd06359 PBP1_Nba_like Type I p 22.6 2.9E+02 0.0063 20.7 5.6 48 29-76 46-94 (333)
355 COG1139 Uncharacterized conser 22.5 1.6E+02 0.0035 24.5 4.2 66 30-95 84-160 (459)
356 PRK02935 hypothetical protein; 22.4 15 0.00033 24.4 -1.3 16 56-71 72-87 (110)
357 PF14451 Ub-Mut7C: Mut7-C ubiq 22.4 1.1E+02 0.0023 19.1 2.6 21 57-77 29-49 (81)
358 PF08308 PEGA: PEGA domain; I 20.9 80 0.0017 18.4 1.8 10 89-98 14-23 (71)
359 PF00731 AIRC: AIR carboxylase 20.5 60 0.0013 22.8 1.3 21 55-75 11-31 (150)
360 PRK13189 peroxiredoxin; Provis 20.3 77 0.0017 23.3 1.9 23 45-67 34-58 (222)
361 PRK13191 putative peroxiredoxi 20.2 81 0.0018 23.1 2.0 25 45-69 32-58 (215)
362 COG5564 Predicted TIM-barrel e 20.2 1.5E+02 0.0033 22.6 3.4 63 32-101 70-136 (276)
363 PF12641 Flavodoxin_3: Flavodo 20.2 2.8E+02 0.0062 19.3 4.7 40 29-69 51-91 (160)
364 cd06388 PBP1_iGluR_AMPA_GluR4 20.2 3.3E+02 0.0072 21.3 5.6 76 34-109 50-149 (371)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.94 E-value=4.9e-27 Score=154.50 Aligned_cols=79 Identities=34% Similarity=0.598 Sum_probs=73.5
Q ss_pred HHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC--------------CCCccCEEEECCeEEeccHHHHH
Q 033445 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR--------------GRRTVPQIFVNGEHIGGADDLKA 105 (119)
Q Consensus 40 i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~--------------g~~~vP~ifi~g~~iGG~~el~~ 105 (119)
+++++++++|+||++++||||.+++++|++++++|..+++|.. |+.++|+|||||++|||++++.+
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 3678899999999999999999999999999999998888753 78999999999999999999999
Q ss_pred HHHcccHHHhhcc
Q 033445 106 AVLSGQLQQLLGT 118 (119)
Q Consensus 106 l~~~g~L~~~L~~ 118 (119)
++++|+|+++|++
T Consensus 81 l~~~G~L~~~l~~ 93 (99)
T TIGR02189 81 LHISGSLVPMLKQ 93 (99)
T ss_pred HHHcCCHHHHHHH
Confidence 9999999999963
No 2
>PRK10824 glutaredoxin-4; Provisional
Probab=99.94 E-value=6.8e-27 Score=157.61 Aligned_cols=85 Identities=27% Similarity=0.432 Sum_probs=79.0
Q ss_pred hhHHHHHHhhccCCcEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEE
Q 033445 34 HSVSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHI 97 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~i 97 (119)
....+++++++++++|+||+| ++||||.+++++|++++++|..++++.+ |++|||+|||||++|
T Consensus 2 ~~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 2 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELV 81 (115)
T ss_pred chHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEE
Confidence 357789999999999999999 4999999999999999999998888754 999999999999999
Q ss_pred eccHHHHHHHHcccHHHhhcc
Q 033445 98 GGADDLKAAVLSGQLQQLLGT 118 (119)
Q Consensus 98 GG~~el~~l~~~g~L~~~L~~ 118 (119)
||++++.+++++|+|+++|++
T Consensus 82 GG~ddl~~l~~~G~L~~lL~~ 102 (115)
T PRK10824 82 GGCDIVIEMYQRGELQQLIKE 102 (115)
T ss_pred cChHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999964
No 3
>PHA03050 glutaredoxin; Provisional
Probab=99.94 E-value=1.7e-26 Score=154.18 Aligned_cols=82 Identities=34% Similarity=0.545 Sum_probs=76.4
Q ss_pred HHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCC---CcEEEEecCC--------------CCCccCEEEECCeEEec
Q 033445 37 SAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLR--------------GRRTVPQIFVNGEHIGG 99 (119)
Q Consensus 37 ~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v---~~~~i~id~~--------------g~~~vP~ifi~g~~iGG 99 (119)
++++++++++++|+||+++|||||.+++++|+++++ +|+.++++.. |.++||+|||||++|||
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGG 82 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeC
Confidence 578999999999999999999999999999999998 6778888751 89999999999999999
Q ss_pred cHHHHHHHHcccHHHhhcc
Q 033445 100 ADDLKAAVLSGQLQQLLGT 118 (119)
Q Consensus 100 ~~el~~l~~~g~L~~~L~~ 118 (119)
++++.+++++|+|.++|++
T Consensus 83 ~ddl~~l~~~g~L~~~l~~ 101 (108)
T PHA03050 83 YSDLLEIDNMDALGDILSS 101 (108)
T ss_pred hHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999975
No 4
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.93 E-value=2.6e-25 Score=145.76 Aligned_cols=80 Identities=30% Similarity=0.465 Sum_probs=74.9
Q ss_pred HHHHHhhccCCcEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEecc
Q 033445 37 SAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGA 100 (119)
Q Consensus 37 ~~~i~~~~~~~~vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~ 100 (119)
.+++++++++++|+||++ ++||||.+++++|++++++|..++++.. |+.++|+|||||++|||+
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ 81 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGC 81 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCh
Confidence 368899999999999998 8999999999999999999999988653 899999999999999999
Q ss_pred HHHHHHHHcccHHHhh
Q 033445 101 DDLKAAVLSGQLQQLL 116 (119)
Q Consensus 101 ~el~~l~~~g~L~~~L 116 (119)
+++.+++++|+|.++|
T Consensus 82 ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 82 DIIMEMYQSGELQTLL 97 (97)
T ss_pred HHHHHHHHCcChHHhC
Confidence 9999999999999876
No 5
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.6e-25 Score=145.87 Aligned_cols=83 Identities=53% Similarity=0.824 Sum_probs=78.1
Q ss_pred HHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC--------------CCCccCEEEECCeEEeccH
Q 033445 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR--------------GRRTVPQIFVNGEHIGGAD 101 (119)
Q Consensus 36 ~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~--------------g~~~vP~ifi~g~~iGG~~ 101 (119)
..++++++++.++|+||+|++||||.+++++|...++.+..+++|+. |.+++|.|||+|++|||++
T Consensus 3 ~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred HHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHH
Confidence 45689999999999999999999999999999999999999999874 8999999999999999999
Q ss_pred HHHHHHHcccHHHhhcc
Q 033445 102 DLKAAVLSGQLQQLLGT 118 (119)
Q Consensus 102 el~~l~~~g~L~~~L~~ 118 (119)
++.+++.+|+|.++|+.
T Consensus 83 dl~~lh~~G~L~~~l~~ 99 (104)
T KOG1752|consen 83 DLMALHKSGELVPLLKE 99 (104)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 99999999999999863
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.90 E-value=2.4e-23 Score=134.47 Aligned_cols=74 Identities=31% Similarity=0.486 Sum_probs=68.6
Q ss_pred HHhhccCCcEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEeccHHH
Q 033445 40 VQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGADDL 103 (119)
Q Consensus 40 i~~~~~~~~vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~~el 103 (119)
+++++++++|+||++ ++||+|.+++++|++++++|..++++.+ |..++|+|||||++|||++++
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence 467889999999999 6999999999999999999998888654 899999999999999999999
Q ss_pred HHHHHcccHH
Q 033445 104 KAAVLSGQLQ 113 (119)
Q Consensus 104 ~~l~~~g~L~ 113 (119)
.+++++|+|+
T Consensus 81 ~~l~~~g~L~ 90 (90)
T cd03028 81 KEMHESGELQ 90 (90)
T ss_pred HHHHHcCCcC
Confidence 9999999985
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.89 E-value=1.5e-22 Score=148.41 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=80.0
Q ss_pred chhHHHHHHhhccCCcEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeE
Q 033445 33 DHSVSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEH 96 (119)
Q Consensus 33 ~~~~~~~i~~~~~~~~vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~ 96 (119)
.+++.+++++++++++|+||+| |+||||++++++|++++++|..++++.+ |++|+|+|||||++
T Consensus 99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~ 178 (204)
T PTZ00062 99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGEL 178 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 4578999999999999999999 6999999999999999999998888654 89999999999999
Q ss_pred EeccHHHHHHHHcccHHHhhcc
Q 033445 97 IGGADDLKAAVLSGQLQQLLGT 118 (119)
Q Consensus 97 iGG~~el~~l~~~g~L~~~L~~ 118 (119)
|||++++++++++|+|+++|..
T Consensus 179 IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 179 IGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred EcChHHHHHHHHcCChhhhhhh
Confidence 9999999999999999999864
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.88 E-value=5.5e-22 Score=125.96 Aligned_cols=71 Identities=41% Similarity=0.713 Sum_probs=66.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEeccHHHHHHHHcccHHHh
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGADDLKAAVLSGQLQQL 115 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~~el~~l~~~g~L~~~ 115 (119)
.+|++|++++||+|.+++++|++.+++|..++++.. |..++|+||+||++|||++++.+++++|+|.++
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l~~~ 81 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPL 81 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCHHHH
Confidence 479999999999999999999999999998888754 889999999999999999999999999999998
Q ss_pred hc
Q 033445 116 LG 117 (119)
Q Consensus 116 L~ 117 (119)
|+
T Consensus 82 ~~ 83 (83)
T PRK10638 82 LK 83 (83)
T ss_pred hC
Confidence 86
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.87 E-value=1e-21 Score=123.15 Aligned_cols=68 Identities=46% Similarity=0.824 Sum_probs=64.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEeccHHHHHHHHcccHHHhh
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGADDLKAAVLSGQLQQLL 116 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~~el~~l~~~g~L~~~L 116 (119)
|+||++++||+|.+++++|++++++|..++++.+ |..++|+|||||++|||++++.+++++|+|+++|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~~l 79 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDPLL 79 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhhhC
Confidence 6899999999999999999999999998888764 8899999999999999999999999999999876
No 10
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.84 E-value=1.7e-20 Score=117.77 Aligned_cols=68 Identities=60% Similarity=0.983 Sum_probs=61.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCC--cEEEEecCC--------------CCCccCEEEECCeEEeccHHHHHHHHcccH
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLR--------------GRRTVPQIFVNGEHIGGADDLKAAVLSGQL 112 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~--~~~i~id~~--------------g~~~vP~ifi~g~~iGG~~el~~l~~~g~L 112 (119)
|++|+++|||+|.+++++|+++++. +..++++.. |..++|++|+||+++||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999988 776666532 778999999999999999999999999999
Q ss_pred HHhh
Q 033445 113 QQLL 116 (119)
Q Consensus 113 ~~~L 116 (119)
.++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 9876
No 11
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.8e-20 Score=118.92 Aligned_cols=65 Identities=45% Similarity=0.842 Sum_probs=60.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHHHcccH
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAVLSGQL 112 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~~~g~L 112 (119)
.|+||++++||||.+++++|++.|+.|..++++.. |.++||+|||||+++||++++.++...|.|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 58999999999999999999999999998877643 789999999999999999999999988876
No 12
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.1e-20 Score=119.49 Aligned_cols=85 Identities=31% Similarity=0.472 Sum_probs=76.4
Q ss_pred hhHHHHHHhhccCCcEEEEEc-----CCChhHHHHHHHHHhcC-CCcEEEEecCC-----------CCCccCEEEECCeE
Q 033445 34 HSVSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLN-EQPFVVELDLR-----------GRRTVPQIFVNGEH 96 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vviy~~-----~~Cp~C~~ak~~L~~~~-v~~~~i~id~~-----------g~~~vP~ifi~g~~ 96 (119)
.+..++|++.++.++|++|.| |.|.|..++.++|..+| +++..+++=++ +|+|+||+||||++
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf 81 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF 81 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence 356789999999999999999 78999999999999999 67776665322 99999999999999
Q ss_pred EeccHHHHHHHHcccHHHhhcc
Q 033445 97 IGGADDLKAAVLSGQLQQLLGT 118 (119)
Q Consensus 97 iGG~~el~~l~~~g~L~~~L~~ 118 (119)
|||+|.+.+++++|+|+++|+.
T Consensus 82 vGG~DIv~Em~q~GELq~~l~~ 103 (105)
T COG0278 82 VGGCDIVREMYQSGELQTLLKE 103 (105)
T ss_pred eccHHHHHHHHHcchHHHHHHh
Confidence 9999999999999999999974
No 13
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.82 E-value=7.8e-20 Score=115.18 Aligned_cols=65 Identities=34% Similarity=0.642 Sum_probs=59.9
Q ss_pred hccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 43 SIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 43 ~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
+-++++|+||++++||+|.+++++|++++++|..++++.+ |..++|+||+||++|||+++|.+++
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 4567899999999999999999999999999999988754 8899999999999999999999875
No 14
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.82 E-value=9.2e-20 Score=112.72 Aligned_cols=63 Identities=44% Similarity=0.773 Sum_probs=58.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCC-ccCEEEECCeEEeccHHHHHHHHcc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRR-TVPQIFVNGEHIGGADDLKAAVLSG 110 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~-~vP~ifi~g~~iGG~~el~~l~~~g 110 (119)
+|+||++++||+|.+++++|++++++|..++++.. |.. ++|+||+||++|||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 48999999999999999999999999998888763 666 9999999999999999999999987
No 15
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.82 E-value=9.7e-20 Score=127.54 Aligned_cols=71 Identities=24% Similarity=0.501 Sum_probs=65.8
Q ss_pred cEEEEEcC------CChhHHHHHHHHHhcCCCcEEEEecCC-----------C----CCccCEEEECCeEEeccHHHHHH
Q 033445 48 KIVIFSKS------YCPYCLRAKRIFADLNEQPFVVELDLR-----------G----RRTVPQIFVNGEHIGGADDLKAA 106 (119)
Q Consensus 48 ~vviy~~~------~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g----~~~vP~ifi~g~~iGG~~el~~l 106 (119)
+|+||+++ +||+|.+++++|+++++.|..++++.+ + +.++|+|||||++|||++++.++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 58999999 999999999999999999998888653 3 48999999999999999999999
Q ss_pred HHcccHHHhhcc
Q 033445 107 VLSGQLQQLLGT 118 (119)
Q Consensus 107 ~~~g~L~~~L~~ 118 (119)
+++|+|+++|++
T Consensus 81 ~e~G~L~~lL~~ 92 (147)
T cd03031 81 NESGELRKLLKG 92 (147)
T ss_pred HHcCCHHHHHhh
Confidence 999999999974
No 16
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.81 E-value=1.5e-19 Score=113.31 Aligned_cols=68 Identities=56% Similarity=1.007 Sum_probs=61.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC--------------CCCccCEEEECCeEEeccHHHHHHHHcccHH
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR--------------GRRTVPQIFVNGEHIGGADDLKAAVLSGQLQ 113 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~--------------g~~~vP~ifi~g~~iGG~~el~~l~~~g~L~ 113 (119)
+|++|++++||+|.+++++|++++++|..++++.. |..++|++|++|+++||++++.++.++|+|+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 58999999999999999999999998886666532 7899999999999999999999999999998
Q ss_pred Hh
Q 033445 114 QL 115 (119)
Q Consensus 114 ~~ 115 (119)
++
T Consensus 81 ~~ 82 (82)
T cd03419 81 KL 82 (82)
T ss_pred CC
Confidence 63
No 17
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.81 E-value=1.6e-19 Score=111.43 Aligned_cols=60 Identities=38% Similarity=0.700 Sum_probs=56.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
+|+||++++||+|.+++++|++++++|..+++++. |..++|+|||||++|||++++.+++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 68999999999999999999999999998888753 8899999999999999999999885
No 18
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.79 E-value=5e-19 Score=109.61 Aligned_cols=60 Identities=28% Similarity=0.540 Sum_probs=56.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
+|++|++++||+|++|+++|++++++|..++++.. +..++|+||+||++|||++++.++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 68999999999999999999999999999988764 7899999999999999999999874
No 19
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.77 E-value=1.6e-18 Score=111.03 Aligned_cols=62 Identities=39% Similarity=0.783 Sum_probs=53.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEecCC-----------CC--CccCEEEECCeEEeccHHHHHHHHcc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLR-----------GR--RTVPQIFVNGEHIGGADDLKAAVLSG 110 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~~-----------g~--~~vP~ifi~g~~iGG~~el~~l~~~g 110 (119)
|+||++++||+|.+|+++|++++ +.+..++++.. |. .++|+|||||+++||+++|.++++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 78999999999999999999985 45667777632 54 89999999999999999999998764
No 20
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.77 E-value=2e-18 Score=109.83 Aligned_cols=63 Identities=41% Similarity=0.693 Sum_probs=55.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh-----cCCCcEEEEecCC-----------C--CCccCEEEECCeEEeccHHHHHHHH
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFAD-----LNEQPFVVELDLR-----------G--RRTVPQIFVNGEHIGGADDLKAAVL 108 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~-----~~v~~~~i~id~~-----------g--~~~vP~ifi~g~~iGG~~el~~l~~ 108 (119)
++|+||++++||+|.+|+++|++ .++++..++++.+ + ..++|+|||||++|||++++.++++
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHH
Confidence 36999999999999999999999 6788888888652 4 3899999999999999999999976
Q ss_pred c
Q 033445 109 S 109 (119)
Q Consensus 109 ~ 109 (119)
.
T Consensus 81 ~ 81 (85)
T PRK11200 81 E 81 (85)
T ss_pred H
Confidence 5
No 21
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.75 E-value=5.9e-18 Score=135.11 Aligned_cols=70 Identities=37% Similarity=0.563 Sum_probs=64.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
.+|+||++++||+|.++|++|++.|++|..++++++ |.++||+|||||++|||++++..
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~-- 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-- 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--
Confidence 479999999999999999999999999999988743 36799999999999999999987
Q ss_pred HcccHHHhhcc
Q 033445 108 LSGQLQQLLGT 118 (119)
Q Consensus 108 ~~g~L~~~L~~ 118 (119)
.+|+|.++|++
T Consensus 80 ~~g~l~~~~~~ 90 (410)
T PRK12759 80 RAGEVIARVKG 90 (410)
T ss_pred HhCCHHHHhcC
Confidence 89999999976
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.68 E-value=2.3e-16 Score=95.09 Aligned_cols=60 Identities=55% Similarity=0.869 Sum_probs=55.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
+|++|++++||+|.+++.+|+++++++..++++.. +..++|++|+||+++||++++.++.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 58999999999999999999999999988888653 7899999999999999999999875
No 23
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.8e-16 Score=113.07 Aligned_cols=83 Identities=25% Similarity=0.406 Sum_probs=75.4
Q ss_pred HHHHHHhhccCCcEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEe--cCC---------CCCccCEEEECCeEEec
Q 033445 36 VSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVEL--DLR---------GRRTVPQIFVNGEHIGG 99 (119)
Q Consensus 36 ~~~~i~~~~~~~~vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~i~i--d~~---------g~~~vP~ifi~g~~iGG 99 (119)
....+.++++.++|++|.| |.|.+.+++..+|+++++.|...++ |+. .|+|+||+||||+++||
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccC
Confidence 5558999999999999999 6799999999999999999876666 432 89999999999999999
Q ss_pred cHHHHHHHHcccHHHhhcc
Q 033445 100 ADDLKAAVLSGQLQQLLGT 118 (119)
Q Consensus 100 ~~el~~l~~~g~L~~~L~~ 118 (119)
+|.+.+++++|+|+..|+.
T Consensus 208 lDIl~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 208 LDILKEMHEKGELVYTLKE 226 (227)
T ss_pred cHHHHHHhhcccHHHHhhc
Confidence 9999999999999999874
No 24
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.62 E-value=1.7e-15 Score=90.39 Aligned_cols=49 Identities=39% Similarity=0.781 Sum_probs=46.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEE
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHI 97 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~i 97 (119)
|++|++++||+|.+++++|++.+++|..++++.+ |..++|+|||||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 7899999999999999999999999999998765 999999999999986
No 25
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.61 E-value=5.9e-15 Score=93.67 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=53.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccH--HHHHHH
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGAD--DLKAAV 107 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~--el~~l~ 107 (119)
+|+||++++||+|.+++++|++.|++|..++++.+ |..++|+++++++.++||+ ++.++.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~ 73 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWSGFRPDMINRLH 73 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEecCCHHHHHHHH
Confidence 68999999999999999999999999999998754 8899999999999999995 454443
No 26
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.61 E-value=5.8e-15 Score=96.00 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=60.7
Q ss_pred EEEEEcCC------ChhHHHHHHHHHhcCCCcEEEEecCC-----------C----CCccCEEEECCeEEeccHHHHHHH
Q 033445 49 IVIFSKSY------CPYCLRAKRIFADLNEQPFVVELDLR-----------G----RRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 49 vviy~~~~------Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g----~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
|++|+++- =..|.+++.+|+..+++|..++++.+ + ..++|+||||++||||++++.++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 67777742 45899999999999999999998643 3 489999999999999999999999
Q ss_pred HcccHHHhhc
Q 033445 108 LSGQLQQLLG 117 (119)
Q Consensus 108 ~~g~L~~~L~ 117 (119)
++|+|.++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999986
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.59 E-value=4.5e-15 Score=91.66 Aligned_cols=54 Identities=26% Similarity=0.460 Sum_probs=48.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCe-EEeccHH
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGE-HIGGADD 102 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~-~iGG~~e 102 (119)
|+||++++||+|.+++++|++++++|..+++++. |..++|+++++|+ ++||++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCCcEEeccCH
Confidence 5899999999999999999999999999888754 8889999999775 9999964
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.36 E-value=5e-12 Score=76.41 Aligned_cols=55 Identities=25% Similarity=0.513 Sum_probs=49.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEeccHH
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGADD 102 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~~e 102 (119)
+|++|+.+|||+|++++.+|++.++++..+++++. +..++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 37899999999999999999999999988888653 88999999999999988753
No 29
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.29 E-value=8e-12 Score=75.48 Aligned_cols=51 Identities=27% Similarity=0.455 Sum_probs=43.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEecCC-------CCCccCEEEECCeEEe
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADL-----NEQPFVVELDLR-------GRRTVPQIFVNGEHIG 98 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~-----~v~~~~i~id~~-------g~~~vP~ifi~g~~iG 98 (119)
+|++|+++|||+|.+++.+|+++ ++++..+++++. |..++|++++||++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEECCEEEE
Confidence 58999999999999999999986 355667777643 8889999999999875
No 30
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.28 E-value=2.2e-11 Score=73.45 Aligned_cols=55 Identities=29% Similarity=0.625 Sum_probs=49.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEeccHH
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGADD 102 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~~e 102 (119)
++++|+.+|||+|.+++.+|++.++++..++++.. +..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 48999999999999999999999999998888754 57899999999999999875
No 31
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.20 E-value=1.6e-10 Score=70.91 Aligned_cols=53 Identities=23% Similarity=0.533 Sum_probs=45.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC------------CCCccCEEEE-CCeEEecc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR------------GRRTVPQIFV-NGEHIGGA 100 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~------------g~~~vP~ifi-~g~~iGG~ 100 (119)
+|++|+.+|||+|.+++.+|++++++|..+++++. +..++|++++ ||..+...
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence 48999999999999999999999999998888753 6789999977 56676543
No 32
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=9.6e-11 Score=88.72 Aligned_cols=73 Identities=22% Similarity=0.449 Sum_probs=63.5
Q ss_pred CCcEEEEEcC------CChhHHHHHHHHHhcCCCcEEEEecCC---------------CCCccCEEEECCeEEeccHHHH
Q 033445 46 SNKIVIFSKS------YCPYCLRAKRIFADLNEQPFVVELDLR---------------GRRTVPQIFVNGEHIGGADDLK 104 (119)
Q Consensus 46 ~~~vviy~~~------~Cp~C~~ak~~L~~~~v~~~~i~id~~---------------g~~~vP~ifi~g~~iGG~~el~ 104 (119)
...||+|+++ +.-.|..++.+|++.++.+...|+.-+ ...++|+|||+|++|||.+++.
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 5679999984 688999999999999988875555322 4788999999999999999999
Q ss_pred HHHHcccHHHhhcc
Q 033445 105 AAVLSGQLQQLLGT 118 (119)
Q Consensus 105 ~l~~~g~L~~~L~~ 118 (119)
+|++.|+|.++|++
T Consensus 210 ~LnE~GkL~~lL~~ 223 (281)
T KOG2824|consen 210 RLNEEGKLGKLLKG 223 (281)
T ss_pred hhhhcchHHHHHhc
Confidence 99999999999975
No 33
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.00 E-value=1.5e-09 Score=69.88 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=53.1
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEecCC-------CCCccCEEEECCeEEe
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL-----NEQPFVVELDLR-------GRRTVPQIFVNGEHIG 98 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~-----~v~~~~i~id~~-------g~~~vP~ifi~g~~iG 98 (119)
...+.++++.++.++.+|+.+|||+|..+.++++++ ++.+..+++++. +..++|.+++||+.++
T Consensus 2 ~~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 2 DLLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred hHHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEECCEEEE
Confidence 456777888888899999999999999999999876 355667777653 8999999999998664
No 34
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.99 E-value=4.2e-09 Score=65.07 Aligned_cols=62 Identities=19% Similarity=0.404 Sum_probs=53.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC--------CCCccCEEEEC----CeEEeccHHHHHHHHc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR--------GRRTVPQIFVN----GEHIGGADDLKAAVLS 109 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~--------g~~~vP~ifi~----g~~iGG~~el~~l~~~ 109 (119)
++.+|+.+.||+|.+++.+|.++|++|..++++.. +..++|+++++ |..+.....+.+++++
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~ 74 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKT 74 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHH
Confidence 47899999999999999999999999988777642 78899999987 7888888888887654
No 35
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.90 E-value=9.3e-09 Score=62.61 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=51.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC---------CCCccCEEEEC-CeEEeccHHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR---------GRRTVPQIFVN-GEHIGGADDLKAAVL 108 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~---------g~~~vP~ifi~-g~~iGG~~el~~l~~ 108 (119)
.+|+.++||+|.+++-+|...|+++..+.++.. +..++|+++.+ |..+++...+.++++
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 589999999999999999999999987776532 57789999997 889999999988865
No 36
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.83 E-value=2.8e-08 Score=61.74 Aligned_cols=61 Identities=13% Similarity=0.318 Sum_probs=51.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEE--CCeEEeccHHHHHHHHc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFV--NGEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi--~g~~iGG~~el~~l~~~ 109 (119)
+++|+.+.||+|.+++.+|+++|++|..++++.. +..++|++.. +|..+.+...+.+++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 6799999999999999999999999988777532 6789999987 36788999988888654
No 37
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.83 E-value=1.5e-08 Score=62.72 Aligned_cols=53 Identities=34% Similarity=0.645 Sum_probs=40.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc----C--CCcEEEEecCC-------CCCccCEEEECCe-EEecc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADL----N--EQPFVVELDLR-------GRRTVPQIFVNGE-HIGGA 100 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~----~--v~~~~i~id~~-------g~~~vP~ifi~g~-~iGG~ 100 (119)
+|++|+.+|||+|++++..|+++ + +.+..+++++. +..++|++++||+ .+-|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~~~~~G~ 68 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGDVEFIGA 68 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECCEEEEecC
Confidence 58999999999999999999764 3 22335555543 8899999999997 44443
No 38
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.82 E-value=3.4e-08 Score=58.10 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=50.3
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
.+|+.++||+|.+++.+|+..++++..++++.. +..++|.++.+|..+++...+.+++
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl 70 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYL 70 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 689999999999999999999999886666531 6889999999999999988887764
No 39
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.74 E-value=3.9e-08 Score=61.26 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=38.4
Q ss_pred cEEEEEcCCChhHHHH----HHHHHhcCCCcEEEEecCC------CCCccCEEEECCeEE
Q 033445 48 KIVIFSKSYCPYCLRA----KRIFADLNEQPFVVELDLR------GRRTVPQIFVNGEHI 97 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~a----k~~L~~~~v~~~~i~id~~------g~~~vP~ifi~g~~i 97 (119)
+|.+|+ +|||.|+.+ ++++++++..+..+.+|.. +..++|++++||+.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEECCEEE
Confidence 466676 999999999 5566677777777777632 999999999999655
No 40
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.72 E-value=8.2e-08 Score=63.19 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=52.0
Q ss_pred cEEEEEcCC------ChhHHHHHHHHHhcCCCcEEEEecCC-----------C---------CCccCEEEECCeEEeccH
Q 033445 48 KIVIFSKSY------CPYCLRAKRIFADLNEQPFVVELDLR-----------G---------RRTVPQIFVNGEHIGGAD 101 (119)
Q Consensus 48 ~vviy~~~~------Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g---------~~~vP~ifi~g~~iGG~~ 101 (119)
.|.||+.+- =..|.++..+|+..+|+|..+|+..+ | ..-.|+||.|++++|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 467777643 24788999999999999999998533 2 334489999999999999
Q ss_pred HHHHHHHcccHHHhhc
Q 033445 102 DLKAAVLSGQLQQLLG 117 (119)
Q Consensus 102 el~~l~~~g~L~~~L~ 117 (119)
++.++.++++|.+.|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999885
No 41
>PHA02125 thioredoxin-like protein
Probab=98.67 E-value=8.3e-08 Score=59.47 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=37.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------CCCccCEEEECCeEE
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------GRRTVPQIFVNGEHI 97 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------g~~~vP~ifi~g~~i 97 (119)
|++|+.+||++|+.++.+|++....+..++.++. +..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEYTYVDVDTDEGVELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhheEEeeeCCCCHHHHHHcCCceeCeEE-CCEEE
Confidence 7899999999999999999876544445555443 889999987 77544
No 42
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.63 E-value=3.6e-07 Score=55.40 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=51.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+++|+.+.||+|.+++.+|+..|+++..++++.. ...++|++..+|..+.....+.+++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 71 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDE 71 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHh
Confidence 3689999999999999999999999987666521 677999999899888888888887653
No 43
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.61 E-value=3.9e-07 Score=55.47 Aligned_cols=57 Identities=25% Similarity=0.415 Sum_probs=48.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEEC-CeEEeccHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVN-GEHIGGADDLKAA 106 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~-g~~iGG~~el~~l 106 (119)
++|+.++||+|.+++.+|+++|++++.++++.. ...++|++..+ |..+.....+.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 689999999999999999999999987776531 67899999996 8888777766654
No 44
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.59 E-value=4e-07 Score=60.70 Aligned_cols=54 Identities=26% Similarity=0.495 Sum_probs=40.2
Q ss_pred HHHhhccCCcEEEE-EcCCChhHHHHHHHHHhcC-----CCcEEEEecCC-------CCCccCEEEE
Q 033445 39 FVQNSIFSNKIVIF-SKSYCPYCLRAKRIFADLN-----EQPFVVELDLR-------GRRTVPQIFV 92 (119)
Q Consensus 39 ~i~~~~~~~~vviy-~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~~-------g~~~vP~ifi 92 (119)
+.+++.....+++| +.+|||+|+.++.+|+++. +.+..+++|+. +..++|++++
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEE
Confidence 34445566667666 6799999999999998764 23446666654 8999999988
No 45
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.58 E-value=1.8e-07 Score=62.37 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=30.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~ 81 (119)
|+||+.++||+|++|+++|+++|++|..+++.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 579999999999999999999999999888754
No 46
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.57 E-value=2.2e-07 Score=76.11 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=70.5
Q ss_pred ccchheeeehhhhhhhhh-c-CCCCCCCCcchhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCC-----CcEEE
Q 033445 5 GWQSRFLVEAVGLLFFLL-L-GNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNE-----QPFVV 77 (119)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-p-~~~~d~~~~~~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v-----~~~~i 77 (119)
+-||..++.+-++-.|++ - ...+.....+++..++++++-++..|.+|.+++||||.++.+.++++.. +...|
T Consensus 74 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i 153 (517)
T PRK15317 74 GVRFAGIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI 153 (517)
T ss_pred eEEEEecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE
Confidence 467888888888773322 2 2233356668889999999999999999999999999999999988743 23344
Q ss_pred EecCC-------CCCccCEEEECCeEEe
Q 033445 78 ELDLR-------GRRTVPQIFVNGEHIG 98 (119)
Q Consensus 78 ~id~~-------g~~~vP~ifi~g~~iG 98 (119)
|..+. +..+||++|+||+.+.
T Consensus 154 d~~~~~~~~~~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 154 DGALFQDEVEARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred EchhCHhHHHhcCCcccCEEEECCcEEE
Confidence 43322 8999999999997663
No 47
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.56 E-value=6.6e-07 Score=57.06 Aligned_cols=62 Identities=23% Similarity=0.425 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEEC-CeEEeccHHHHHHH
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVN-GEHIGGADDLKAAV 107 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~-g~~iGG~~el~~l~ 107 (119)
...+.+|+.+.||+|.+++.+|...|++|..++++.. ...++|++.++ |..+.....+.+++
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhh
Confidence 3458999999999999999999999999987766521 67899999998 88888888777764
No 48
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.56 E-value=2.6e-07 Score=75.72 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=69.8
Q ss_pred ccchheeeehhhhhhhhh--cCCCCCCCCcchhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCC-----cEEE
Q 033445 5 GWQSRFLVEAVGLLFFLL--LGNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ-----PFVV 77 (119)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--p~~~~d~~~~~~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~-----~~~i 77 (119)
+-||..++.+-++-.|++ -...+.....+++..+.++++-++..|.+|.++.||||.++.+.++++... ...+
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~i 154 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMI 154 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEE
Confidence 467888888887763322 222233466678889999999999999999999999999999999887533 2343
Q ss_pred EecCC-------CCCccCEEEECCeEEe
Q 033445 78 ELDLR-------GRRTVPQIFVNGEHIG 98 (119)
Q Consensus 78 ~id~~-------g~~~vP~ifi~g~~iG 98 (119)
|..+. +..+||++||||+.++
T Consensus 155 d~~~~~~~~~~~~v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 155 DGALFQDEVEALGIQGVPAVFLNGEEFH 182 (515)
T ss_pred EchhCHHHHHhcCCcccCEEEECCcEEE
Confidence 33221 8889999999998664
No 49
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.52 E-value=4.3e-07 Score=62.31 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=30.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~ 81 (119)
|+||+.++||+|++|+++|++.|++|..+++.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 789999999999999999999999998887643
No 50
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.48 E-value=9.6e-07 Score=53.30 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=47.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecC------C-------CCCccCEEEE-CCeEEeccHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDL------R-------GRRTVPQIFV-NGEHIGGADDLKAAV 107 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~------~-------g~~~vP~ifi-~g~~iGG~~el~~l~ 107 (119)
.+|+.++||+|.+++-+|..+++++..+.++. . ...++|++.+ +|..+.....+..++
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yL 73 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYL 73 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHh
Confidence 68999999999999999999999987665541 1 6779999997 667777777776654
No 51
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.48 E-value=5.2e-07 Score=74.63 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=69.2
Q ss_pred ccchheeeehhhhhhhhh--cCCCCCCCCcchhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhc-----CCCcEEE
Q 033445 5 GWQSRFLVEAVGLLFFLL--LGNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL-----NEQPFVV 77 (119)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--p~~~~d~~~~~~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~-----~v~~~~i 77 (119)
+-||..++.+-++-.|++ -...+.....+++..+.++++-++..|.+|..++||+|.++.+.+++. +++.+.+
T Consensus 434 ~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i 513 (555)
T TIGR03143 434 GLKFHGVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMI 513 (555)
T ss_pred ceEEEecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEE
Confidence 367777777777662222 122233556688999999999889899999999999999999988764 3555566
Q ss_pred EecCC-------CCCccCEEEECCeEE
Q 033445 78 ELDLR-------GRRTVPQIFVNGEHI 97 (119)
Q Consensus 78 ~id~~-------g~~~vP~ifi~g~~i 97 (119)
+.... +..+||.++|||+.+
T Consensus 514 ~~~~~~~~~~~~~v~~vP~~~i~~~~~ 540 (555)
T TIGR03143 514 DVSHFPDLKDEYGIMSVPAIVVDDQQV 540 (555)
T ss_pred ECcccHHHHHhCCceecCEEEECCEEE
Confidence 66542 899999999999743
No 52
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.46 E-value=1.4e-06 Score=53.68 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=52.1
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+|+.++||+|.+++-+|+..|+.+..++++.. ...++|++..||..+.+...+.+++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHH
Confidence 68999999999999999999999887777542 788999999999999999998888654
No 53
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.46 E-value=1.9e-06 Score=52.35 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=49.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHHH
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAVL 108 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~~ 108 (119)
+.+|+.+.||+|.+++.+|++.|++++.+.++.. ...++|.+..+|..+.....+..++.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLV 73 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 3689999999999999999999999987666521 56799999999988888877777653
No 54
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.45 E-value=8.2e-07 Score=65.19 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=49.6
Q ss_pred CCCcchhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEecCC-------CCCccCEEEECCe
Q 033445 29 ATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLR-------GRRTVPQIFVNGE 95 (119)
Q Consensus 29 ~~~~~~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~~-------g~~~vP~ifi~g~ 95 (119)
....++...+.+++.-++..|++|+.+|||+|+.++.+++++. +.+..++.+.. +..++|+++++++
T Consensus 117 ~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 117 EPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKG 195 (215)
T ss_pred CCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecC
Confidence 3444556677777766777788899999999999999998763 22334555543 8999999999653
No 55
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.41 E-value=4.3e-07 Score=59.64 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=30.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~ 81 (119)
|+||++++||+|++++++|++.|++|..+++.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 579999999999999999999999999888864
No 56
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.39 E-value=3.4e-06 Score=51.30 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=48.1
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCC---CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 55 SYCPYCLRAKRIFADLNEQPFVVELDLR---GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~v~~~~i~id~~---g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+.||+|.+++.+|+..+++|+.++++.. ....+|++..+|+.+.++..+.+++++
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPWRSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcccCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 4899999999999999999998877653 567999999999999999998887654
No 57
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.36 E-value=3.6e-06 Score=52.95 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=37.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcC----CCcEEEEecCC------CCCccCEEEECC
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLR------GRRTVPQIFVNG 94 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~----v~~~~i~id~~------g~~~vP~ifi~g 94 (119)
++++|++++|+.|..++..|++.. ++...++|+.+ ....+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCCCCEEEEcC
Confidence 489999999999999999999864 22457888765 556999999999
No 58
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.35 E-value=2e-06 Score=57.54 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=30.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~ 81 (119)
+.||+.++|++|++|+++|++.|++|..+++.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 689999999999999999999999998887743
No 59
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.31 E-value=2.7e-06 Score=58.44 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=30.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~ 81 (119)
|+||+.++|+.|++|+++|++.|++|..+++.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 789999999999999999999999998877643
No 60
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.31 E-value=3.7e-06 Score=56.65 Aligned_cols=52 Identities=15% Similarity=0.457 Sum_probs=39.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecCC-------CCCccCEEEE--CCeEEe
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLR-------GRRTVPQIFV--NGEHIG 98 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~~-------g~~~vP~ifi--~g~~iG 98 (119)
.-|+-|+.+|||.|+.....|+++- +.+..+++|+. +..++|++++ ||+.++
T Consensus 16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 3466799999999999999987753 22446677664 8999999855 888764
No 61
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.30 E-value=2.9e-06 Score=58.37 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=29.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEec
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id 80 (119)
|+||+.++|+.|++|+++|++.+++|..+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 78999999999999999999999999988875
No 62
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.29 E-value=3.3e-06 Score=64.93 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=55.2
Q ss_pred HHHHHhhc-cCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC--------CCCccCEEEECCeEEeccHHHHHH
Q 033445 37 SAFVQNSI-FSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR--------GRRTVPQIFVNGEHIGGADDLKAA 106 (119)
Q Consensus 37 ~~~i~~~~-~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~--------g~~~vP~ifi~g~~iGG~~el~~l 106 (119)
+.....+- ++-++++|-...||||.+++.+|+-++++|.++++++- .+..||.+.+.|+.+-...-+..+
T Consensus 78 e~~~~~ld~s~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~~Geqm~dSsvIIs~ 156 (370)
T KOG3029|consen 78 ETKATRLDGSPLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLIRGEQMVDSSVIISL 156 (370)
T ss_pred HHHHhhcCCCCceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEeccceechhHHHHHH
Confidence 33344443 33489999999999999999999999999999999873 788999999988876655444333
No 63
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.27 E-value=9.1e-06 Score=48.96 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=48.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
++|+.+.||+|.+++-+|+..|+++..+.++.. ...++|.+..+|..+.....+.+++
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl 72 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYL 72 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 689999999999999999999999987766521 5678999999999888877776653
No 64
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.27 E-value=7.2e-06 Score=55.51 Aligned_cols=50 Identities=12% Similarity=0.430 Sum_probs=36.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc----CCCcEEEEecCC----------------------CCCccCEEEE--CCeEEe
Q 033445 49 IVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLR----------------------GRRTVPQIFV--NGEHIG 98 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~----~v~~~~i~id~~----------------------g~~~vP~ifi--~g~~iG 98 (119)
++.|+.+|||+|+.+...|+++ +...+.+++|.. +..++|++++ +|+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~ 104 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVS 104 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEE
Confidence 7789999999999988777665 355667777631 3445999955 886554
No 65
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.19 E-value=7.1e-06 Score=50.92 Aligned_cols=49 Identities=27% Similarity=0.634 Sum_probs=34.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----cCCCcEEEEecCC------CCCccCEEEECCeEE
Q 033445 48 KIVIFSKSYCPYCLRAKRIFAD----LNEQPFVVELDLR------GRRTVPQIFVNGEHI 97 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~----~~v~~~~i~id~~------g~~~vP~ifi~g~~i 97 (119)
+|.+| .++||+|.++.+++++ +++....+++... |..++|.++|||+.+
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~ygv~~vPalvIng~~~ 60 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIEDFEEIEKYGVMSVPALVINGKVV 60 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHHHHHHTT-SSSSEEEETTEEE
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHHHHHHcCCCCCCEEEECCEEE
Confidence 46674 5669999988887765 4544555555321 999999999999843
No 66
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.18 E-value=5.5e-06 Score=54.80 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=30.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~ 81 (119)
|+||+.++|+.|++|+++|++.|++|..+++.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 579999999999999999999999999888754
No 67
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.18 E-value=2.4e-05 Score=48.04 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=51.2
Q ss_pred EEEEEcC-------CChhHHHHHHHHHhcCCCcEEEEecCC---CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 49 IVIFSKS-------YCPYCLRAKRIFADLNEQPFVVELDLR---GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~-------~Cp~C~~ak~~L~~~~v~~~~i~id~~---g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+++|..+ .||+|.+++.+|+..|++++.++++.. ...++|.+..+|+.+.+...+.+++++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLAKRSPKGKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcccCCCCCCCCEEEECCEEEcCHHHHHHHHHH
Confidence 4677776 579999999999999999987776542 688999999999999999888887654
No 68
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.17 E-value=2.9e-06 Score=56.85 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=30.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~ 81 (119)
|.+|+.++||+|++|+++|++.+++|..+++.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 479999999999999999999999999888764
No 69
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.17 E-value=1.7e-05 Score=48.54 Aligned_cols=52 Identities=23% Similarity=0.501 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEecCC-------CCCccCEEEE--CCeEE
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL-----NEQPFVVELDLR-------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~-----~v~~~~i~id~~-------g~~~vP~ifi--~g~~i 97 (119)
..-+++|+.+||++|.+....+++. ++.+..++.+.. +..++|++++ +|+.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEE
Confidence 3448889999999999999999873 344556666643 8889999877 77644
No 70
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.16 E-value=1.4e-05 Score=51.34 Aligned_cols=51 Identities=18% Similarity=0.378 Sum_probs=37.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc----C--CCcEEEEecCC-------CCCccCEEEE--CCeEEe
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADL----N--EQPFVVELDLR-------GRRTVPQIFV--NGEHIG 98 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~----~--v~~~~i~id~~-------g~~~vP~ifi--~g~~iG 98 (119)
-++.|+.+||+.|+.....++++ + +.+..+++++. +..++|++++ +|+.++
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE
Confidence 36788889999999999998763 2 23346666543 8899999866 776553
No 71
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=6.4e-06 Score=51.53 Aligned_cols=54 Identities=30% Similarity=0.536 Sum_probs=45.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------------------CCCccCEEEE-CCeEEeccHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------------------GRRTVPQIFV-NGEHIGGADDLK 104 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------------------g~~~vP~ifi-~g~~iGG~~el~ 104 (119)
++|+...||.|..+++.|+++++.|..++|..+ |+..+|.+.. ||+.|-| +++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~Dl~ 82 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DDLS 82 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-chhh
Confidence 899999999999999999999999998888543 8999999987 5566655 4443
No 72
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.13 E-value=3.1e-05 Score=47.19 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=50.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------C-CCccCEEEECCeEEeccHHHHHHHHc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------G-RRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g-~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+.+|+.+.||+|.+++-+|...|+++..+.++.. . ..++|.+..+|..+.....+.+++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~ 72 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDE 72 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHh
Confidence 3689999999999999999999999887666531 2 47999999999888888888877653
No 73
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.06 E-value=6.2e-05 Score=47.69 Aligned_cols=64 Identities=28% Similarity=0.514 Sum_probs=43.9
Q ss_pred chhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhc----C--CCcEEEEecCC-------CCCccCEEEE--CCeEE
Q 033445 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL----N--EQPFVVELDLR-------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 33 ~~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~----~--v~~~~i~id~~-------g~~~vP~ifi--~g~~i 97 (119)
.++..+.+.+ -...-++.|..+||+.|+.....|.++ + +.+..++.++. +...+|++++ +|+.+
T Consensus 6 ~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 6 DENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp TTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred HHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEE
Confidence 3445555555 334457788889999999999888765 2 22335555543 9999999955 77655
No 74
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.06 E-value=3.6e-05 Score=50.11 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=44.0
Q ss_pred hhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEecCC----------CCCccCEEEE--CCeE
Q 033445 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLR----------GRRTVPQIFV--NGEH 96 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~~----------g~~~vP~ifi--~g~~ 96 (119)
++..+.+.+.....-++-|+.+||+.|+.....|+++. +.+..+++|+. +..++|++++ ||+.
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEK 83 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeE
Confidence 44555555544455677899999999999988887642 33445666542 8899998755 8865
Q ss_pred E
Q 033445 97 I 97 (119)
Q Consensus 97 i 97 (119)
+
T Consensus 84 v 84 (103)
T cd02985 84 I 84 (103)
T ss_pred E
Confidence 5
No 75
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.06 E-value=2.1e-05 Score=52.75 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=30.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEec
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id 80 (119)
.|++|+.+.|+.|++|+++|++.|++|..+++-
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 378999999999999999999999999988764
No 76
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.05 E-value=1.7e-05 Score=50.33 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=40.0
Q ss_pred HHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcC----CCc--EEEEecCC-------CCCccCEEEE--CCeEE
Q 033445 38 AFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN----EQP--FVVELDLR-------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 38 ~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~----v~~--~~i~id~~-------g~~~vP~ifi--~g~~i 97 (119)
+.+.+.-...-++.|+.+||+.|++....+.++. ..+ ..++.++. +..++|++++ +|+.+
T Consensus 5 ~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 5 QVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred HHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 3343332334578889999999999988887643 122 24455443 8999999965 77654
No 77
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.03 E-value=8.9e-05 Score=45.16 Aligned_cols=61 Identities=8% Similarity=0.079 Sum_probs=51.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+.+|+.+.||+|.+++-+|...|+++..+.++.. ....+|.+..+|..+.....+.+++.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhh
Confidence 5799999999999999999999999886655421 678899999999999888888887653
No 78
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.00 E-value=6.1e-05 Score=46.30 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=49.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
+++|..+.||+|.+++-+|+++|++++.+.++.. ...++|.+..||..+.....+..++
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence 4689999999999999999999999886665421 6789999999999888888777664
No 79
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.92 E-value=3.8e-05 Score=57.35 Aligned_cols=25 Identities=24% Similarity=0.611 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
+..|++|+-+.||||+++.+.+.++
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHH
Confidence 3558899999999999999999875
No 80
>PTZ00051 thioredoxin; Provisional
Probab=97.91 E-value=7.6e-05 Score=47.44 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=36.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEecCC-------CCCccCEEEE--CCeEEe
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLR-------GRRTVPQIFV--NGEHIG 98 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~~-------g~~~vP~ifi--~g~~iG 98 (119)
-++.|+.+||+.|++....|..+. +.+..++.++. +..++|++++ +|+.++
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEE
Confidence 367889999999999998887742 33345555542 8899998855 776553
No 81
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.89 E-value=9.3e-05 Score=44.86 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=47.8
Q ss_pred EEEEcCCChhHHHHHHHHHh--cCCCcEEEEecCC----------CCCccCEEEE-CCeEEeccHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFAD--LNEQPFVVELDLR----------GRRTVPQIFV-NGEHIGGADDLKAAV 107 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~--~~v~~~~i~id~~----------g~~~vP~ifi-~g~~iGG~~el~~l~ 107 (119)
.+|+.+.||+|.+++-+|.. .++++..+.++.. ...++|.+.. ||..+.....+.+++
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yL 72 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYL 72 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhh
Confidence 68999999999999999999 8888887777531 6788999985 778888877777654
No 82
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.89 E-value=9.6e-05 Score=47.86 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 55 SYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
..||||++++=.|.+.|++|..+++|.. -...+|++..+|..+...+.+.+++++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde 84 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEE 84 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHH
Confidence 5699999999999999999998877642 567899999999999999988888654
No 83
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.88 E-value=0.00011 Score=48.90 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=38.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEecCC-------CCCccCEEEE--CCeEEe
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLR-------GRRTVPQIFV--NGEHIG 98 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~~-------g~~~vP~ifi--~g~~iG 98 (119)
.-++.|+.+||+.|+.+...|+++. +.+..|++++. +..++|++.+ +|+.++
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 3466778899999999998887753 33446666653 8999999844 887654
No 84
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.87 E-value=3.5e-05 Score=49.83 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=30.3
Q ss_pred cEEEEEcCCChhHHHHHHHH-------HhcC--CCcEEEEecCC-----------CCCccCEEEE
Q 033445 48 KIVIFSKSYCPYCLRAKRIF-------ADLN--EQPFVVELDLR-----------GRRTVPQIFV 92 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L-------~~~~--v~~~~i~id~~-----------g~~~vP~ifi 92 (119)
-++.|+.+||++|++....+ +.++ +.+..+++++. +..++|++++
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 36789999999999987554 1222 23335555441 8899998855
No 85
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.87 E-value=0.00019 Score=45.14 Aligned_cols=51 Identities=24% Similarity=0.498 Sum_probs=36.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecCC-------CCCccCEEEE--CCeEE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLR-------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~~-------g~~~vP~ifi--~g~~i 97 (119)
.-++.|+.+||++|+.....|+++. +.+..++.+.. +..++|++++ +|+.+
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 4577888899999999988887642 22335555543 8999999876 77644
No 86
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.7e-05 Score=55.71 Aligned_cols=65 Identities=29% Similarity=0.434 Sum_probs=47.9
Q ss_pred chhHHHHHHhhccC--CcEEEEEcCCChhHHHHHHHHHhcCC------CcEEEEecCC-------CCCccCEEEE--CCe
Q 033445 33 DHSVSAFVQNSIFS--NKIVIFSKSYCPYCLRAKRIFADLNE------QPFVVELDLR-------GRRTVPQIFV--NGE 95 (119)
Q Consensus 33 ~~~~~~~i~~~~~~--~~vviy~~~~Cp~C~~ak~~L~~~~v------~~~~i~id~~-------g~~~vP~ifi--~g~ 95 (119)
..+..++-..++++ +-+|.|..+||.-|+-....|+++-- .++.+++|+. +...+|++++ ||+
T Consensus 47 ~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe 126 (150)
T KOG0910|consen 47 VQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGE 126 (150)
T ss_pred ccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCE
Confidence 45566666666543 34778999999999999999988642 2447777765 8999999855 886
Q ss_pred EE
Q 033445 96 HI 97 (119)
Q Consensus 96 ~i 97 (119)
.+
T Consensus 127 ~~ 128 (150)
T KOG0910|consen 127 KV 128 (150)
T ss_pred Ee
Confidence 44
No 87
>PHA02278 thioredoxin-like protein
Probab=97.86 E-value=0.00018 Score=47.37 Aligned_cols=52 Identities=17% Similarity=0.403 Sum_probs=37.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecC------C-----CCCccCEEEE--CCeEE
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDL------R-----GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~------~-----g~~~vP~ifi--~g~~i 97 (119)
..-++-|+.+||+.|+.....++++. ..+..+++|. . +..++|++.+ ||+.+
T Consensus 15 ~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 15 KDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred CcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 34466788899999999998887752 2244666663 1 8999999855 88755
No 88
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.85 E-value=0.00017 Score=46.74 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc----CCC---cEEEEecCC------CCCccCEEEE--CCeEE
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL----NEQ---PFVVELDLR------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~----~v~---~~~i~id~~------g~~~vP~ifi--~g~~i 97 (119)
..-++.|+.+||+.|+.....|+++ +.. +..++.|.. +..++|++++ ||+.+
T Consensus 18 ~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 18 GLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred CeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEEE
Confidence 3346789999999999998888764 211 224555522 8999997755 77643
No 89
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.85 E-value=9.9e-05 Score=46.74 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=41.1
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecCC-------CCCccCEEEE--CCeEE
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLR-------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~~-------g~~~vP~ifi--~g~~i 97 (119)
+..+.+.+.....-++.|+.+||+.|+++...|+++. +.+..++.++. +..++|++++ +|+.+
T Consensus 4 ~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 4 EFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 3444444444444577899999999999999887642 22224444432 8899998744 77644
No 90
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.84 E-value=7.6e-05 Score=47.84 Aligned_cols=54 Identities=15% Similarity=0.330 Sum_probs=38.7
Q ss_pred hhccCCcEEEEEcCCChhHHHHHHHHHhcC-------CCcEEEEecCC-------CCCccCEEEE--CCe
Q 033445 42 NSIFSNKIVIFSKSYCPYCLRAKRIFADLN-------EQPFVVELDLR-------GRRTVPQIFV--NGE 95 (119)
Q Consensus 42 ~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~-------v~~~~i~id~~-------g~~~vP~ifi--~g~ 95 (119)
++++...++.|+.+|||+|++....++++. +.+..++.+.. +..++|++++ +|+
T Consensus 13 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 13 LVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred HHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC
Confidence 344556799999999999999998887653 12224444432 8999999976 664
No 91
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.82 E-value=8.3e-05 Score=54.14 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=50.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC---------CCCccCEEE-ECCeEEeccHHHHHHHHc
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR---------GRRTVPQIF-VNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~---------g~~~vP~if-i~g~~iGG~~el~~l~~~ 109 (119)
++|....||+|.+++-+|..+|++|+.++++.. ...++|++. .||..+.+...+.+++.+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 368889999999999999999999987665321 568999997 788899999998888765
No 92
>PRK10387 glutaredoxin 2; Provisional
Probab=97.81 E-value=0.0001 Score=52.98 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=50.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC---------CCCccCEE-EECCeEEeccHHHHHHHHc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR---------GRRTVPQI-FVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~---------g~~~vP~i-fi~g~~iGG~~el~~l~~~ 109 (119)
+.+|+.+.||+|.+++-+|+.+|++|+.++++.. +..++|++ ..+|..+.....+..++++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 3689999999999999999999999987766431 46799999 4688899999888888765
No 93
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=4.7e-06 Score=58.62 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=23.7
Q ss_pred CCccccchheeeehhhhh-hhhhcCCCCC
Q 033445 1 MKKRGWQSRFLVEAVGLL-FFLLLGNAPT 28 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~p~~~~d 28 (119)
||.|||||+|++.++++. +|+|| |++
T Consensus 125 ~G~RS~RYsmvV~nGvV~~~~iE~--p~~ 151 (165)
T COG0678 125 FGVRSWRYSMVVENGVVEKLFIEP--PGD 151 (165)
T ss_pred cceeeeeEEEEEeCCeEEEEEecC--CCC
Confidence 689999999999999998 99999 665
No 94
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=3.5e-05 Score=59.49 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=50.3
Q ss_pred chhHHHHHHhhccC-CcEEEEEcCCChhHHHHHHHHHhcC----CCcE--EEEecCC-------CCCccCEE--EECCeE
Q 033445 33 DHSVSAFVQNSIFS-NKIVIFSKSYCPYCLRAKRIFADLN----EQPF--VVELDLR-------GRRTVPQI--FVNGEH 96 (119)
Q Consensus 33 ~~~~~~~i~~~~~~-~~vviy~~~~Cp~C~~ak~~L~~~~----v~~~--~i~id~~-------g~~~vP~i--fi~g~~ 96 (119)
..+.++.|.+.... .-+|.|+.|||+.|+.....|+.+- ..+. .+++|.. |..++|+| |++|+.
T Consensus 30 ~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqp 109 (304)
T COG3118 30 EANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQP 109 (304)
T ss_pred HhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcC
Confidence 34455555555545 4466788899999999999998763 3333 5666654 99999998 779999
Q ss_pred EeccH
Q 033445 97 IGGAD 101 (119)
Q Consensus 97 iGG~~ 101 (119)
|-||.
T Consensus 110 VdgF~ 114 (304)
T COG3118 110 VDGFQ 114 (304)
T ss_pred ccccC
Confidence 98873
No 95
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.78 E-value=0.00015 Score=53.19 Aligned_cols=57 Identities=21% Similarity=0.503 Sum_probs=41.1
Q ss_pred HHhhccCCcEEEEEc---CCChhHHHHHHHHHhcC-----CCcEEEEec--CC-------CCCccCEEEE--CCeE
Q 033445 40 VQNSIFSNKIVIFSK---SYCPYCLRAKRIFADLN-----EQPFVVELD--LR-------GRRTVPQIFV--NGEH 96 (119)
Q Consensus 40 i~~~~~~~~vviy~~---~~Cp~C~~ak~~L~~~~-----v~~~~i~id--~~-------g~~~vP~ifi--~g~~ 96 (119)
...+.+...+++|+. +|||+|+.+..+++++. +....+++| +. +..++|++.+ ||+.
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCee
Confidence 444555667889988 99999999999998763 222355555 32 9999999966 5543
No 96
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.76 E-value=0.00025 Score=42.55 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=48.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
++|+...|+.|.+++.+|..+|+++..+.++.. ...++|++..+|..+.....+.+++
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYL 72 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 578888999999999999999999887666421 6779999999999888877777664
No 97
>PRK09381 trxA thioredoxin; Provisional
Probab=97.72 E-value=0.00029 Score=45.74 Aligned_cols=54 Identities=22% Similarity=0.414 Sum_probs=38.0
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhc----CC--CcEEEEecCC-------CCCccCEEEE--CCeEEe
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADL----NE--QPFVVELDLR-------GRRTVPQIFV--NGEHIG 98 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~----~v--~~~~i~id~~-------g~~~vP~ifi--~g~~iG 98 (119)
...-++.|+.+|||.|+.....|+++ +. ....++.+.. +..++|++++ +|+.++
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEE
Confidence 33457788999999999998888754 22 2234555542 8999999866 887664
No 98
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.72 E-value=0.0002 Score=47.93 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=40.8
Q ss_pred hHHHHHHhhccCCc--EEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecCC--------CCC--ccCEEEE---C
Q 033445 35 SVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLR--------GRR--TVPQIFV---N 93 (119)
Q Consensus 35 ~~~~~i~~~~~~~~--vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~~--------g~~--~vP~ifi---~ 93 (119)
+.++.++.+...++ ++.|+.+||++|+.....+.+.. ..+..+++|.. +.. .+|++++ +
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 35566666654433 66688999999999988887732 23455565532 333 4999855 5
Q ss_pred CeEEe
Q 033445 94 GEHIG 98 (119)
Q Consensus 94 g~~iG 98 (119)
|+.++
T Consensus 87 Gk~~~ 91 (117)
T cd02959 87 GDVHP 91 (117)
T ss_pred CCCch
Confidence 65543
No 99
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.71 E-value=6.3e-05 Score=51.53 Aligned_cols=66 Identities=18% Similarity=0.432 Sum_probs=38.8
Q ss_pred chhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEecCC----------CCCccCEEEE---CC
Q 033445 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL-----NEQPFVVELDLR----------GRRTVPQIFV---NG 94 (119)
Q Consensus 33 ~~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~-----~v~~~~i~id~~----------g~~~vP~ifi---~g 94 (119)
.++..++++...++.++++++.+|||+|.+..-.|.+. +++...+..|+. |.+++|++++ +|
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~ 108 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDG 108 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT-
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCC
Confidence 45667788888888999999999999999888777654 233334443421 8999999966 34
Q ss_pred eEEe
Q 033445 95 EHIG 98 (119)
Q Consensus 95 ~~iG 98 (119)
+.+|
T Consensus 109 ~~lg 112 (129)
T PF14595_consen 109 KELG 112 (129)
T ss_dssp -EEE
T ss_pred CEeE
Confidence 5554
No 100
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.71 E-value=0.0002 Score=47.22 Aligned_cols=52 Identities=17% Similarity=0.402 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc-------CCCcEEEEecCC-------CCCccCEEEE--CCeEE
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL-------NEQPFVVELDLR-------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~-------~v~~~~i~id~~-------g~~~vP~ifi--~g~~i 97 (119)
..-++.|..+||+.|+.....++++ ++....++++.. +..++|++++ +|+.+
T Consensus 25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 25 KPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred CeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEE
Confidence 4457788999999999887776543 233345565543 9999998864 77655
No 101
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.69 E-value=0.00032 Score=43.74 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCC------------CCCccCEEEEC-CeEEeccHHHHHHHHc
Q 033445 55 SYCPYCLRAKRIFADLNEQPFVVELDLR------------GRRTVPQIFVN-GEHIGGADDLKAAVLS 109 (119)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~v~~~~i~id~~------------g~~~vP~ifi~-g~~iGG~~el~~l~~~ 109 (119)
++||+|.+++-+|...++++..+.++.. ....+|.+..+ |..+.+...+.+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~ 81 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSFAIAEYLEE 81 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHHHHHHHHHH
Confidence 6799999999999999999886665421 36799999988 8999999988888654
No 102
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.68 E-value=0.00024 Score=47.86 Aligned_cols=63 Identities=19% Similarity=0.403 Sum_probs=44.9
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecCC-------CCCccCEE--EECCeEE
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLR-------GRRTVPQI--FVNGEHI 97 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~~-------g~~~vP~i--fi~g~~i 97 (119)
+..+.+.+.-...-|+-|+.+|||.|+.....|+++- +.++.+++|+. +....|+. |-||+|+
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 4455555553444466799999999999999998864 23457777764 67778887 4489887
No 103
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.68 E-value=0.00011 Score=40.99 Aligned_cols=46 Identities=28% Similarity=0.621 Sum_probs=34.9
Q ss_pred EEEEEcCCChhHHHHHHHHHh-----cCCCcEEEEecCC----------CCCccCEEEECC
Q 033445 49 IVIFSKSYCPYCLRAKRIFAD-----LNEQPFVVELDLR----------GRRTVPQIFVNG 94 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~-----~~v~~~~i~id~~----------g~~~vP~ifi~g 94 (119)
+++|..++||+|.+....+++ .++.+..++.+.. +..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEe
Confidence 478999999999999999994 3444555555543 557999998865
No 104
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.66 E-value=0.00027 Score=45.89 Aligned_cols=48 Identities=23% Similarity=0.486 Sum_probs=34.6
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEec-CC-------CCCccCEEEE
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELD-LR-------GRRTVPQIFV 92 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id-~~-------g~~~vP~ifi 92 (119)
...-++.|+.+||++|+.....|+++. +.+..++.+ .. +..++|++++
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILL 78 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEE
Confidence 334578899999999999998887753 333355555 22 8899998854
No 105
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.65 E-value=0.00027 Score=48.30 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=29.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEec
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id 80 (119)
.+++|+.++|.-|++|+++|++.|++|..+++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 478999999999999999999999999877763
No 106
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.65 E-value=0.00036 Score=44.11 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=33.2
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhcC--------CCcEEEEecCC-------CCCccCEEEE
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADLN--------EQPFVVELDLR-------GRRTVPQIFV 92 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~~--------v~~~~i~id~~-------g~~~vP~ifi 92 (119)
...-+++|+.+||+.|++....+++.. +.+..++.++. +...+|.+++
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKF 75 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEE
Confidence 344488999999999998877776532 11224445443 8999999855
No 107
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.64 E-value=0.00054 Score=41.38 Aligned_cols=59 Identities=8% Similarity=0.043 Sum_probs=49.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEeccHHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGADDLKAAVL 108 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~~el~~l~~ 108 (119)
++|..+.|+.|.+++-+|...|++++.+.++.. ...++|.+..+|..+.....+..++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~ 71 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLA 71 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhh
Confidence 678889999999999999999999987766521 67899999999999988888777653
No 108
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.63 E-value=0.00034 Score=49.20 Aligned_cols=51 Identities=24% Similarity=0.437 Sum_probs=35.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcC-------CCcEEEEecCC-------CCCc------cCEE--EECCeEEe
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLN-------EQPFVVELDLR-------GRRT------VPQI--FVNGEHIG 98 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~-------v~~~~i~id~~-------g~~~------vP~i--fi~g~~iG 98 (119)
-++.|+.+|||.|+.....++++. +.+..+++|+. +..+ +|++ |.+|+.++
T Consensus 50 vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 50 WLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 388999999999999998887652 22235555543 5555 8988 44887664
No 109
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.63 E-value=0.00066 Score=41.36 Aligned_cols=61 Identities=5% Similarity=-0.151 Sum_probs=50.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC----C------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL----R------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~----~------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+++|..+.|+.|.+++-+|...+++++.+.++. . ...++|.+..+|..+.....+..++.+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 578888899999999999999999988776641 1 567899999999999988888887643
No 110
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.63 E-value=0.00036 Score=46.04 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=38.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEecC-C-----CCCccCEEEE--CCeEEecc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDL-R-----GRRTVPQIFV--NGEHIGGA 100 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~-~-----g~~~vP~ifi--~g~~iGG~ 100 (119)
-++.|+.+||+.|+.....|+++. +.+..+++++ . +..++|++.+ +|+.++..
T Consensus 27 vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 27 VVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 356788999999999999888652 3334666654 2 8899998844 89877544
No 111
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.62 E-value=0.0003 Score=46.82 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=29.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEec
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id 80 (119)
+++|+.+.|.-|++|+++|++.++++..+++-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 57999999999999999999999999877763
No 112
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.60 E-value=0.00024 Score=47.67 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=41.6
Q ss_pred ccCCcEEEEEcCC--ChhHHHHHHHHHhcCCC------cEEEEecCC-------CCCccCEEEE--CCeEEecc
Q 033445 44 IFSNKIVIFSKSY--CPYCLRAKRIFADLNEQ------PFVVELDLR-------GRRTVPQIFV--NGEHIGGA 100 (119)
Q Consensus 44 ~~~~~vviy~~~~--Cp~C~~ak~~L~~~~v~------~~~i~id~~-------g~~~vP~ifi--~g~~iGG~ 100 (119)
.....|+.|+.+| ||.|..+...|+++--. +..+++|+. +..++|++.+ ||+.++..
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGVL 99 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEEE
Confidence 3455577888886 99999999999876322 335666654 9999999844 99877543
No 113
>PRK10996 thioredoxin 2; Provisional
Probab=97.59 E-value=0.00049 Score=47.29 Aligned_cols=52 Identities=23% Similarity=0.456 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc----CCCcE--EEEecCC-------CCCccCEEEE--CCeEE
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL----NEQPF--VVELDLR-------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~----~v~~~--~i~id~~-------g~~~vP~ifi--~g~~i 97 (119)
..-++.|+.+||+.|++....|.+. +.... .++++.. +..++|++++ +|+.+
T Consensus 53 k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 53 LPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 3447788999999999988777664 22222 4444443 8999998865 88755
No 114
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.59 E-value=0.00027 Score=45.38 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=35.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCC------CcEEEEecCC-------CCCccCEEEE--CCeE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNE------QPFVVELDLR-------GRRTVPQIFV--NGEH 96 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v------~~~~i~id~~-------g~~~vP~ifi--~g~~ 96 (119)
.-++.|+.+||++|++....++++.. .+..++.++. +..++|++++ +|+.
T Consensus 20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 84 (101)
T cd03003 20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMN 84 (101)
T ss_pred eEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCC
Confidence 34778999999999999888876531 1235555543 8899999854 6653
No 115
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.57 E-value=0.00064 Score=41.24 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=42.7
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEecC--C------------CCCccCEEEE-CCeEEeccHHHHHHHHc
Q 033445 56 YCPYCLRAKRIFADLNEQPFVVELDL--R------------GRRTVPQIFV-NGEHIGGADDLKAAVLS 109 (119)
Q Consensus 56 ~Cp~C~~ak~~L~~~~v~~~~i~id~--~------------g~~~vP~ifi-~g~~iGG~~el~~l~~~ 109 (119)
.||||.++.-+|+.+|+++....++. . +..+||.+.. +|+.+.....+.+++++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 49999999999999999987544411 0 7789999998 88999999988888654
No 116
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.55 E-value=0.00024 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.808 Sum_probs=17.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~ 69 (119)
...+++|+.+|||+|++..+.+.+
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHH
Confidence 455889999999999999777764
No 117
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.53 E-value=0.00059 Score=48.90 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=37.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEecCC------CCCccCEEEE--CCeEEe
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLR------GRRTVPQIFV--NGEHIG 98 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~~------g~~~vP~ifi--~g~~iG 98 (119)
-|+-|+.+||+.|+.....|+++- +.+..|++++. +..++|++++ +|+.++
T Consensus 86 VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 86 VVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEE
Confidence 355688899999999988887653 33446666641 8899998855 998764
No 118
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.53 E-value=0.0013 Score=40.08 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=49.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+.+|+.+.+|.|.++.-+|+..|+++..+.++.. ....+|.+..+|..+.....+..++.+
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~ 74 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLAR 74 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHh
Confidence 3689999999999999999999999886665421 678899999898888887777777543
No 119
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.52 E-value=0.00083 Score=48.71 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=52.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
.+.+|+.+.||+|.++.-+|.+.|++|+.+.+|.. ....||++..+|..+--...+..++.+
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~ 81 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDE 81 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHH
Confidence 47899999999999999999999999987777631 678999999999888877777776543
No 120
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.52 E-value=0.0012 Score=40.73 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=48.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEEC---CeEEeccHHHHHHHHc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVN---GEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~---g~~iGG~~el~~l~~~ 109 (119)
+.+|+.+. |+|.+++-+|+..|+++..+.++.. ...++|.+..+ |..+.....+..++.+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~ 77 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAE 77 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHH
Confidence 57898886 9999999999999999886666521 56789999887 7888888888777543
No 121
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.52 E-value=0.00042 Score=45.05 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=34.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcC------------CCcEEEEecCC-------CCCccCEEEE--CCe
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLN------------EQPFVVELDLR-------GRRTVPQIFV--NGE 95 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~------------v~~~~i~id~~-------g~~~vP~ifi--~g~ 95 (119)
-++.|..+||++|++....++++. +.+..++.|.. +..++|++++ +|+
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCc
Confidence 477899999999999998886431 12234555543 9999999854 665
No 122
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.51 E-value=0.00043 Score=44.65 Aligned_cols=57 Identities=25% Similarity=0.357 Sum_probs=37.8
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecC--C-------CCCccCEEEE
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDL--R-------GRRTVPQIFV 92 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~--~-------g~~~vP~ifi 92 (119)
+..+.+.+. ...-++.|..+||++|++....++++. +....++.+. . +..++|++++
T Consensus 9 ~~~~~i~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 9 NFDKVVHNT-NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred hHHHHHhcC-CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 344444432 223588899999999999887777652 2223455554 2 8999999866
No 123
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.50 E-value=0.00049 Score=44.23 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=34.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecCC-------CCCccCEEEE--CC
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLR-------GRRTVPQIFV--NG 94 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~~-------g~~~vP~ifi--~g 94 (119)
.-++.|+.+||+.|++....++++. +.+..++.++. +..++|++++ +|
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 4577899999999999988887653 22235555543 8999999855 55
No 124
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.49 E-value=0.00046 Score=47.68 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=35.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecCC---------CCCccCEEEE---CCeEE
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLR---------GRRTVPQIFV---NGEHI 97 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~~---------g~~~vP~ifi---~g~~i 97 (119)
-|+.|+.+||++|+.....|.++. +.+..+++|.. +..++|++++ +|+.+
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 467888999999999988887642 22345566532 8899998854 46544
No 125
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.48 E-value=0.00051 Score=46.52 Aligned_cols=59 Identities=15% Similarity=0.312 Sum_probs=37.9
Q ss_pred hhHHHHHHhhccCCcEEEEEc-------CCChhHHHHHHHHHhc----C--CCcEEEEecCC--------------CCC-
Q 033445 34 HSVSAFVQNSIFSNKIVIFSK-------SYCPYCLRAKRIFADL----N--EQPFVVELDLR--------------GRR- 85 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vviy~~-------~~Cp~C~~ak~~L~~~----~--v~~~~i~id~~--------------g~~- 85 (119)
++..+.+.+.-...-++.|+. +|||.|+.+...|+++ . +.+..|++++. +..
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~ 89 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTT 89 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCccc
Confidence 344445554322344777888 8999999888777654 2 33446666531 556
Q ss_pred ccCEEEE
Q 033445 86 TVPQIFV 92 (119)
Q Consensus 86 ~vP~ifi 92 (119)
++|++++
T Consensus 90 ~iPT~~~ 96 (119)
T cd02952 90 GVPTLLR 96 (119)
T ss_pred CCCEEEE
Confidence 9999966
No 126
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.46 E-value=0.00044 Score=49.86 Aligned_cols=24 Identities=21% Similarity=0.697 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~ 69 (119)
+..|++|+.+.||||+++.+.+.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 466899999999999999999985
No 127
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.41 E-value=0.00091 Score=42.52 Aligned_cols=45 Identities=24% Similarity=0.359 Sum_probs=32.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecCC-------CCCccCEEEE
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLR-------GRRTVPQIFV 92 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~~-------g~~~vP~ifi 92 (119)
-++.|+.+||++|++....+.++. +.+..++.++. +..++|++++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 477888999999999988776642 12234454433 8899998854
No 128
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.40 E-value=0.00046 Score=44.63 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=34.3
Q ss_pred HHHHhhcc-CCcEEEEEcCCChhHHHHHHHHHhcCC-------Cc--EEEEecCC-------CCCccCEEEE
Q 033445 38 AFVQNSIF-SNKIVIFSKSYCPYCLRAKRIFADLNE-------QP--FVVELDLR-------GRRTVPQIFV 92 (119)
Q Consensus 38 ~~i~~~~~-~~~vviy~~~~Cp~C~~ak~~L~~~~v-------~~--~~i~id~~-------g~~~vP~ifi 92 (119)
+.+.+..+ ..-++.|+.+|||+|++....|+++.. .. ..++.+.. +..++|++++
T Consensus 7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKL 78 (104)
T ss_pred hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEE
Confidence 33444443 334667888999999988877765421 12 23344332 8999999854
No 129
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.38 E-value=0.00069 Score=49.30 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=36.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEecCC----CCCccCEEEE--CCeEEe
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLR----GRRTVPQIFV--NGEHIG 98 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~~----g~~~vP~ifi--~g~~iG 98 (119)
||-|+.+||+.|+.....|+++- +.+..|+++.. +..++|++++ ||+.++
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~~lPTlliyk~G~~v~ 166 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDKNLPTILVYRNGDIVK 166 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhHhhCCCCCCCEEEEEECCEEEE
Confidence 55688899999999999998763 22335555432 8899999865 887553
No 130
>PTZ00062 glutaredoxin; Provisional
Probab=97.36 E-value=0.00064 Score=50.07 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=37.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCC---cEEEEecCC-CCCccCEEEE--CCeEEe
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLR-GRRTVPQIFV--NGEHIG 98 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~---~~~i~id~~-g~~~vP~ifi--~g~~iG 98 (119)
.|+.|+.+|||.|+.....|.++--+ ...+.+|.+ +...+|++++ ||+.|+
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLADANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccccCcccceEEEEEECCEEEe
Confidence 45566689999999999999987432 335555554 9999997744 777665
No 131
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.34 E-value=0.0017 Score=40.30 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=33.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcC------CCcE--EEEecCC-------CCCccCEEEE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLN------EQPF--VVELDLR-------GRRTVPQIFV 92 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~------v~~~--~i~id~~-------g~~~vP~ifi 92 (119)
.-+++|+.+||++|++....+++.. .... .++.++. +...+|++++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 4688999999999999988886632 1222 4444442 8899999855
No 132
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.34 E-value=0.00083 Score=44.76 Aligned_cols=29 Identities=28% Similarity=0.626 Sum_probs=20.5
Q ss_pred HHHhhccCC---cEEEEEcCCChhHHHHHHHH
Q 033445 39 FVQNSIFSN---KIVIFSKSYCPYCLRAKRIF 67 (119)
Q Consensus 39 ~i~~~~~~~---~vviy~~~~Cp~C~~ak~~L 67 (119)
.++++.+.+ -++.|+.+|||+|++....+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHh
Confidence 344444443 47788999999999987654
No 133
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.33 E-value=0.0012 Score=43.21 Aligned_cols=47 Identities=17% Similarity=0.475 Sum_probs=33.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcC-------CCcEEEEecCC---------CCCccCEEEE
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADLN-------EQPFVVELDLR---------GRRTVPQIFV 92 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~~-------v~~~~i~id~~---------g~~~vP~ifi 92 (119)
..-++.|..+|||+|++....++++. +.+..++.|.. +...+|++++
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILF 84 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence 45688899999999999998887652 22235555541 6789998853
No 134
>PRK10026 arsenate reductase; Provisional
Probab=97.31 E-value=0.00052 Score=47.84 Aligned_cols=34 Identities=12% Similarity=0.312 Sum_probs=30.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEec
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id 80 (119)
..++||+.+.|.-|++|+++|++++++|..+++-
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 4589999999999999999999999999877763
No 135
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.30 E-value=0.001 Score=42.25 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=34.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc----CC---Cc--EEEEecCC-------CCCccCEEEE--CCeEE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADL----NE---QP--FVVELDLR-------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~----~v---~~--~~i~id~~-------g~~~vP~ifi--~g~~i 97 (119)
.-++.|+.+||+.|++....++++ +. .. ..++.+.. +..++|++++ +|+.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 86 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEKV 86 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCee
Confidence 357789999999999887777554 21 12 24444432 8899999754 66533
No 136
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.30 E-value=0.00045 Score=46.17 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=29.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~ 81 (119)
|++|+.++|+-|++|+++|++.++++..+++-+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLK 33 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccC
Confidence 579999999999999999999999998888654
No 137
>PRK10853 putative reductase; Provisional
Probab=97.24 E-value=0.00052 Score=46.31 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=29.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEec
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id 80 (119)
+++|+.++|.-|++|+++|++.+++|..+++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 78999999999999999999999999888764
No 138
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.00067 Score=45.81 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=29.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEec
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id 80 (119)
.|++|..+.|.-|++|+++|+++|++|..+++-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 389999999999999999999999999877654
No 139
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.23 E-value=0.0023 Score=43.51 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=35.3
Q ss_pred HHhhccCCc--EEEEEcCCChhHHHHHH-HHHh------cCCCcEEEEec--CC---------------CCCccCEEEE-
Q 033445 40 VQNSIFSNK--IVIFSKSYCPYCLRAKR-IFAD------LNEQPFVVELD--LR---------------GRRTVPQIFV- 92 (119)
Q Consensus 40 i~~~~~~~~--vviy~~~~Cp~C~~ak~-~L~~------~~v~~~~i~id--~~---------------g~~~vP~ifi- 92 (119)
++++.+.++ ++.|+.+||++|++..+ .+.. +.-.+..+.+| +. +...+|++++
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl 87 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFL 87 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 444444333 44578899999998865 2322 22234444444 32 5678999966
Q ss_pred --CCeEE
Q 033445 93 --NGEHI 97 (119)
Q Consensus 93 --~g~~i 97 (119)
+|+.+
T Consensus 88 ~~~G~~~ 94 (124)
T cd02955 88 TPDLKPF 94 (124)
T ss_pred CCCCCEE
Confidence 67777
No 140
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.22 E-value=0.0019 Score=41.06 Aligned_cols=51 Identities=20% Similarity=0.387 Sum_probs=34.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc----C----CCcEEEEecC--C-------CCCccCEEEE--CCeEE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADL----N----EQPFVVELDL--R-------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~----~----v~~~~i~id~--~-------g~~~vP~ifi--~g~~i 97 (119)
.-++.|+.+|||+|++....+.++ . +.+..++.+. . +..++|++++ +|+.+
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCee
Confidence 447899999999999997666543 1 1122445554 2 8889998854 66544
No 141
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.20 E-value=0.00095 Score=48.36 Aligned_cols=33 Identities=30% Similarity=0.626 Sum_probs=22.7
Q ss_pred cEEEEEcCCChhHHHHHH----HHHhcCCCcEEEEec
Q 033445 48 KIVIFSKSYCPYCLRAKR----IFADLNEQPFVVELD 80 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~----~L~~~~v~~~~i~id 80 (119)
+++.|+.+|||+|++... +.+++++...-|.+|
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 389999999999998854 444556544444433
No 142
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.20 E-value=0.0014 Score=41.61 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=33.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcC--------CCcEEEEecC-C-------CCCccCEEEE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLN--------EQPFVVELDL-R-------GRRTVPQIFV 92 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~--------v~~~~i~id~-~-------g~~~vP~ifi 92 (119)
.-++.|+.+||++|++....+.++. +.+..++.+. . +..++|++++
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 4578999999999998888876532 1123555555 2 8899999865
No 143
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.0012 Score=43.33 Aligned_cols=70 Identities=21% Similarity=0.217 Sum_probs=53.7
Q ss_pred cEEEEEcCCChh--H----HHHHHHHHhcCCCcEEEEecCC-------------------CCCccCEEEECCeEEeccHH
Q 033445 48 KIVIFSKSYCPY--C----LRAKRIFADLNEQPFVVELDLR-------------------GRRTVPQIFVNGEHIGGADD 102 (119)
Q Consensus 48 ~vviy~~~~Cp~--C----~~ak~~L~~~~v~~~~i~id~~-------------------g~~~vP~ifi~g~~iGG~~e 102 (119)
.|.+|+++.-+. - .++..+|+..++.+..+++... |...-|+||-++++.|+++.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 466776654332 2 3567788888787777765321 88889999999999999999
Q ss_pred HHHHHHcccHHHhhc
Q 033445 103 LKAAVLSGQLQQLLG 117 (119)
Q Consensus 103 l~~l~~~g~L~~~L~ 117 (119)
+.+..+++.|.+.|+
T Consensus 83 F~ea~E~ntl~eFL~ 97 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLG 97 (108)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999884
No 144
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.16 E-value=0.0033 Score=38.29 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=47.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecC----C--------CCCccCEEEEC-CeEEeccHHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDL----R--------GRRTVPQIFVN-GEHIGGADDLKAAVL 108 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~----~--------g~~~vP~ifi~-g~~iGG~~el~~l~~ 108 (119)
++|+.+.||+|.+++-+|...|+++..+.++. . ...++|++..+ |..+.....+.+++.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 57889999999999999999999988665542 1 67899999984 878877777776653
No 145
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.14 E-value=0.0018 Score=45.23 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=42.1
Q ss_pred chhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCC------CcEEEEecCC-------CCCcc-CEE-EE-CCe
Q 033445 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNE------QPFVVELDLR-------GRRTV-PQI-FV-NGE 95 (119)
Q Consensus 33 ~~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v------~~~~i~id~~-------g~~~v-P~i-fi-~g~ 95 (119)
.++..+.+.+.-...-|+-|+.+||+.|+.....|+++.. .++.+++|+. +..+. |.+ |. ||+
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 4455566654444455778999999999999999887641 2347777764 66644 555 34 555
No 146
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0016 Score=43.24 Aligned_cols=48 Identities=25% Similarity=0.472 Sum_probs=36.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCC-----cEEEEecCC-------CCCccCEEEE--CCeE
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQ-----PFVVELDLR-------GRRTVPQIFV--NGEH 96 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~-----~~~i~id~~-------g~~~vP~ifi--~g~~ 96 (119)
|+-|+.+||+-|+...-++.++... +..+++|+. +..++|++.+ +|+-
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEE
Confidence 4558889999999999999887533 346777743 8999999844 6653
No 147
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.08 E-value=0.0049 Score=37.93 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=44.7
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEec-CC--CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 55 SYCPYCLRAKRIFADLNEQPFVVELD-LR--GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~v~~~~i~id-~~--g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+.+|+|-++..+|+-.++++..+... .. ....+|.+..+|+.|+|++.+.+++++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 45799999999999999888754332 22 457799999999999999999988764
No 148
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.07 E-value=0.0013 Score=43.92 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=34.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCC------cEEEEecCC--------CCCccCEE--EECCe
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNEQ------PFVVELDLR--------GRRTVPQI--FVNGE 95 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v~------~~~i~id~~--------g~~~vP~i--fi~g~ 95 (119)
.-++.|..+||++|+.....++++... +..|+.|+. +..++|++ |.+|+
T Consensus 31 ~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 31 VSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 347789999999999999888876311 224555432 67899988 44665
No 149
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.07 E-value=0.006 Score=45.79 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 55 SYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
..||+|+++.-.|...|++|..+.+|.. ...++|++..+|..+.....+.+++.+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHH
Confidence 5699999999999999999987777642 567899999999999999988888764
No 150
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.07 E-value=0.0022 Score=47.40 Aligned_cols=59 Identities=24% Similarity=0.457 Sum_probs=46.6
Q ss_pred hhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHh----cCCCcEEEEecCC------------------CCCccCEEE
Q 033445 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFAD----LNEQPFVVELDLR------------------GRRTVPQIF 91 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~----~~v~~~~i~id~~------------------g~~~vP~if 91 (119)
+...+.++++....-+++|..+.||+|++....|+. .|+....|.+|-. |...+|.+|
T Consensus 109 ~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 109 QKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred HHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 455666788888888999999999999988777765 4666667777621 889999998
Q ss_pred E
Q 033445 92 V 92 (119)
Q Consensus 92 i 92 (119)
+
T Consensus 189 L 189 (215)
T PF13728_consen 189 L 189 (215)
T ss_pred E
Confidence 7
No 151
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.04 E-value=0.0009 Score=41.66 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=35.4
Q ss_pred hHHHHHHhhccCCc--EEEEEcCCChhHHHHHHHHHhc-------CCCcEEEEecCC--------CCCccCEEEE
Q 033445 35 SVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFADL-------NEQPFVVELDLR--------GRRTVPQIFV 92 (119)
Q Consensus 35 ~~~~~i~~~~~~~~--vviy~~~~Cp~C~~ak~~L~~~-------~v~~~~i~id~~--------g~~~vP~ifi 92 (119)
+..+.+.++.+.++ ++.|+.+||++|++.++.+-+. .-.+..+.+|-. ....+|++++
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ 79 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQGYPTFFF 79 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCSSSEEEE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCccCCEEEE
Confidence 44555555554333 6678889999999988776332 223444544432 2255898865
No 152
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.04 E-value=0.0023 Score=40.57 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=32.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCC------Cc--EEEEecCC------CCCccCEEEE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNE------QP--FVVELDLR------GRRTVPQIFV 92 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v------~~--~~i~id~~------g~~~vP~ifi 92 (119)
.-++.|..+||++|+.....+++..- .. ..++.++. +..++|++++
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILF 79 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEE
Confidence 44778999999999998888876531 12 24444432 6789998865
No 153
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.03 E-value=0.0085 Score=36.13 Aligned_cols=58 Identities=7% Similarity=0.004 Sum_probs=47.3
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecC------C-------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDL------R-------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~------~-------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
.+|..+..|+|.+++-+|++.|++|..++++. . ...++|.+..+|..+.....+.+++
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL 72 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYL 72 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHh
Confidence 58999999999999999999999988665541 0 5779999999998888777766653
No 154
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.01 E-value=0.0014 Score=44.28 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.1
Q ss_pred CCCccCEEEECCeEEeccHHHHHH
Q 033445 83 GRRTVPQIFVNGEHIGGADDLKAA 106 (119)
Q Consensus 83 g~~~vP~ifi~g~~iGG~~el~~l 106 (119)
|..++|+++|||+.+-|..+...+
T Consensus 126 gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 126 GITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred CCCcCCeEEECCEEecCCCCHHHH
Confidence 788899999999988887665544
No 155
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.99 E-value=0.0024 Score=47.68 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcC----CC--cEEEEecCC-------CCCccCEEEE--CCeEE
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADLN----EQ--PFVVELDLR-------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~~----v~--~~~i~id~~-------g~~~vP~ifi--~g~~i 97 (119)
..-++.|+.+|||+|++....++++. .. +..++.++. +..++|++++ +|+.+
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEE
Confidence 34578899999999999988887652 11 223444432 8999998854 77755
No 156
>PRK15113 glutathione S-transferase; Provisional
Probab=96.99 E-value=0.0087 Score=43.41 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=50.5
Q ss_pred CcEEEEEcC--CChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 47 NKIVIFSKS--YCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 47 ~~vviy~~~--~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
..+++|+.+ .||+|.++.-+|.+.|++|+.+.++.. -...||++..||..+--..-+..++.+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~ 81 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEE 81 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence 347899975 699999999999999999987766521 678999999999888777777666543
No 157
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.97 E-value=0.0029 Score=48.37 Aligned_cols=55 Identities=27% Similarity=0.503 Sum_probs=39.9
Q ss_pred HHHHhhccCCcEEEEEcCCChhHHHHHHHHHhc----CCCcEEEEecC-----------C-------CCCccCEEEE
Q 033445 38 AFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDL-----------R-------GRRTVPQIFV 92 (119)
Q Consensus 38 ~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~----~v~~~~i~id~-----------~-------g~~~vP~ifi 92 (119)
..++++....-++.|..+|||+|++....|+++ ++....|++|. . |..++|++|+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 445666667778889999999999888877654 44444455543 1 8899999976
No 158
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.83 E-value=0.013 Score=35.52 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=45.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecC------C-------CCCccCEEEEC-CeEEeccHHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDL------R-------GRRTVPQIFVN-GEHIGGADDLKAAVL 108 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~------~-------g~~~vP~ifi~-g~~iGG~~el~~l~~ 108 (119)
.+|+.+.| .|.+++-+|.+.|+++..+.++. . ....+|.+..+ |..+.....+.+++.
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence 57887776 48899999999999988665542 1 67899999887 788888888877754
No 159
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.83 E-value=0.015 Score=34.96 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=47.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
.+|+.+. +.|.+++-+|...|+++..+.++.. ....+|.+..+|..+.....+..++.+
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~ 73 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAE 73 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence 4677665 6799999999999999886665521 677999999999999988888887653
No 160
>PLN02473 glutathione S-transferase
Probab=96.80 E-value=0.01 Score=42.71 Aligned_cols=60 Identities=13% Similarity=0.069 Sum_probs=50.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHHH
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAVL 108 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~~ 108 (119)
+.+|+.+.+|+|.++.-+|.++|++|+.+.++.. ...++|.+..||..|....-+..++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~ 75 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYA 75 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHH
Confidence 5789999999999999999999999886655421 56899999999998888888877764
No 161
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.78 E-value=0.0058 Score=42.05 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=23.8
Q ss_pred hHHHHHHhhccCCc--EEEEEcCCChhHHHHHHHHH
Q 033445 35 SVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFA 68 (119)
Q Consensus 35 ~~~~~i~~~~~~~~--vviy~~~~Cp~C~~ak~~L~ 68 (119)
+.++.+..+.+.++ ++.|+++|||+|++.++..-
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f 46 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFA 46 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhh
Confidence 45566666655444 55677899999999888653
No 162
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.75 E-value=0.0019 Score=47.53 Aligned_cols=53 Identities=32% Similarity=0.594 Sum_probs=32.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCC----c--EEEEe-------cCC------------------CCCccCEEEECCe-E
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQ----P--FVVEL-------DLR------------------GRRTVPQIFVNGE-H 96 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~----~--~~i~i-------d~~------------------g~~~vP~ifi~g~-~ 96 (119)
|.+|+..+|.-|..|.++|.++... . +.|+- |+- +....|+++|||+ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 6799999999999999999987422 1 12221 110 5666899999994 6
Q ss_pred EeccH
Q 033445 97 IGGAD 101 (119)
Q Consensus 97 iGG~~ 101 (119)
..|++
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 67765
No 163
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.75 E-value=0.0042 Score=40.93 Aligned_cols=30 Identities=10% Similarity=0.300 Sum_probs=23.4
Q ss_pred EEcCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033445 52 FSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (119)
Q Consensus 52 y~~~~Cp~C~~ak~~L~~~~v~~~~i~id~ 81 (119)
|+.+.|.-|++|.++|++.|+++..+++-+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhh
Confidence 788999999999999999999999888743
No 164
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.74 E-value=0.0047 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=19.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~ 69 (119)
..|++|+-+.||||++.-+-+..
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHH
Confidence 45889999999999998776654
No 165
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.011 Score=44.45 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=54.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
..|.+|+.-.|||.+++.=.|+..|++|+.+++|-. -...||++.-||+.|+-.-.+.++..+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence 569999999999999999999999999998887642 578999999999999887777777554
No 166
>PLN02378 glutathione S-transferase DHAR1
Probab=96.70 E-value=0.0091 Score=43.44 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 55 SYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
..||+|.++.-+|++.|+++..+.+|.. ...+||++..+|..+.-...+..++.+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~ 82 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEE 82 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHH
Confidence 4599999999999999999987776632 678999999999888877777777654
No 167
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.68 E-value=0.011 Score=41.23 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~ 69 (119)
..-++-|+.+|||.|++....|.+
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHH
Confidence 344667888999999998888865
No 168
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.67 E-value=0.0063 Score=40.32 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=35.8
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCC-------cE--EEEecC--C-------CCCccCEEEE
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ-------PF--VVELDL--R-------GRRTVPQIFV 92 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~-------~~--~i~id~--~-------g~~~vP~ifi 92 (119)
+.++.+++.- ..-++.|+.+||+.|+.....++++... .. .++.+. . +...+|++++
T Consensus 10 ~f~~~i~~~~-~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 10 SFNSALLGSP-SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred hHHHHHhcCC-CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence 3444444332 3457789999999999988887664211 11 333222 1 8899999866
No 169
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=96.58 E-value=0.012 Score=44.70 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=53.0
Q ss_pred hhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccHHH
Q 033445 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGADDL 103 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~el 103 (119)
+.++..++..... .+. ...||+|.++.-+|+++|++|..+.++.. -...+|.+..+|..+.....+
T Consensus 54 ~~~~~~~~~~~~~-~~~---~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI 129 (265)
T PLN02817 54 SPLEVCVKASLTV-PNK---LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVI 129 (265)
T ss_pred ccHHHHHhcccCC-CCc---CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHH
Confidence 3456666655532 223 34599999999999999999986666532 567999999999888877777
Q ss_pred HHHHHc
Q 033445 104 KAAVLS 109 (119)
Q Consensus 104 ~~l~~~ 109 (119)
.+++.+
T Consensus 130 ~~YL~e 135 (265)
T PLN02817 130 TQALEE 135 (265)
T ss_pred HHHHHH
Confidence 777654
No 170
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.57 E-value=0.01 Score=40.51 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=17.2
Q ss_pred CCCccCEEEECCeEEeccHHHH
Q 033445 83 GRRTVPQIFVNGEHIGGADDLK 104 (119)
Q Consensus 83 g~~~vP~ifi~g~~iGG~~el~ 104 (119)
|..++|++||||+.+.|..++.
T Consensus 133 ~i~~tPt~~inG~~~~~~~~~~ 154 (162)
T PF13462_consen 133 GITGTPTFFINGKYVVGPYTIE 154 (162)
T ss_dssp T-SSSSEEEETTCEEETTTSHH
T ss_pred CCccccEEEECCEEeCCCCCHH
Confidence 8999999999999998654433
No 171
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.50 E-value=0.01 Score=45.20 Aligned_cols=59 Identities=12% Similarity=0.239 Sum_probs=46.3
Q ss_pred hhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHH----hcCCCcEEEEecCC------------------CCCccCEEE
Q 033445 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFA----DLNEQPFVVELDLR------------------GRRTVPQIF 91 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~----~~~v~~~~i~id~~------------------g~~~vP~if 91 (119)
+...+.++++.+..-++.|..+.||+|.+.-..|+ ++|+...-|.+|-. |...+|.+|
T Consensus 139 ~~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~ 218 (256)
T TIGR02739 139 EQKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALY 218 (256)
T ss_pred HHHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEE
Confidence 44566788888889999999999999998777764 45776667776632 688999998
Q ss_pred E
Q 033445 92 V 92 (119)
Q Consensus 92 i 92 (119)
+
T Consensus 219 L 219 (256)
T TIGR02739 219 L 219 (256)
T ss_pred E
Confidence 7
No 172
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=96.50 E-value=0.026 Score=35.11 Aligned_cols=55 Identities=16% Similarity=0.027 Sum_probs=44.7
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecC---C-CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 55 SYCPYCLRAKRIFADLNEQPFVVELDL---R-GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~v~~~~i~id~---~-g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+..+.|.++.-+|+.+|++|+.+.... . ....+|.+.+||+.|++..-+..++.+
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~ 73 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAEFMSPSGKVPFIRVGNQIVSEFGPIVQFVEA 73 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCccccCCCCcccEEEECCEEEeCHHHHHHHHhc
Confidence 467889999999999999998765532 1 356799999999999999888887653
No 173
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.49 E-value=0.034 Score=33.73 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=43.9
Q ss_pred cCCChhHHHHHHHHHhcCCCcEEEEecCC------------CCCccCEEEECCeEEeccHHHHHHH
Q 033445 54 KSYCPYCLRAKRIFADLNEQPFVVELDLR------------GRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 54 ~~~Cp~C~~ak~~L~~~~v~~~~i~id~~------------g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
...||+|.++.-+|...|++|..+.++.. ....+|.+..+|..+.....+..++
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL 72 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYL 72 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHh
Confidence 36799999999999999999886655421 6889999999999888877776653
No 174
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.40 E-value=0.013 Score=44.37 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=44.9
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHh----cCCCcEEEEecCC------------------CCCccCEEEE
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFAD----LNEQPFVVELDLR------------------GRRTVPQIFV 92 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~----~~v~~~~i~id~~------------------g~~~vP~ifi 92 (119)
.-.+.++++....-++.|..+.||+|.+.-..|+. +|++..-|.+|-. |...+|.+|+
T Consensus 133 ~~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 133 QQRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred HHHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 44556888888899999999999999987766654 5666666666531 7789999987
No 175
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0068 Score=44.09 Aligned_cols=59 Identities=27% Similarity=0.441 Sum_probs=44.9
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCcEEEEe--cCC-------CCCccCEEEE-CCeEEeccHHHHHHHHc
Q 033445 51 IFSKSYCPYCLRAKRIFADLNEQPFVVEL--DLR-------GRRTVPQIFV-NGEHIGGADDLKAAVLS 109 (119)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~v~~~~i~i--d~~-------g~~~vP~ifi-~g~~iGG~~el~~l~~~ 109 (119)
+|..+.||||.+++=.+.-.+++.+..-+ |.. |...||.+.- +|+..+-.=++.++..+
T Consensus 3 LYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~ 71 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDE 71 (215)
T ss_pred eeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHH
Confidence 67779999999999999988888763322 221 9999999866 77888877777766544
No 176
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.33 E-value=0.015 Score=47.71 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=33.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcC-------CCcEEEEecCC---------CCCccCEEEE--CC
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLN-------EQPFVVELDLR---------GRRTVPQIFV--NG 94 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~-------v~~~~i~id~~---------g~~~vP~ifi--~g 94 (119)
.-++.|..+||++|+.....|+++. +.+..+++|.. +..++|++.+ +|
T Consensus 373 ~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 373 AWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECC
Confidence 3477899999999999998887652 22334555421 7889999854 55
No 177
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.26 E-value=0.06 Score=33.15 Aligned_cols=60 Identities=8% Similarity=-0.038 Sum_probs=48.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC------------CCCccCEEEECCeEEeccHHHHHHHH
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR------------GRRTVPQIFVNGEHIGGADDLKAAVL 108 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~------------g~~~vP~ifi~g~~iGG~~el~~l~~ 108 (119)
.++|..+..+.|.++.-+|.+.|++++.+.++.. ....+|.+.+||..+.....+..++.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~ 73 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIA 73 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHH
Confidence 4688888889999999999999999886665421 25699999999988887777776654
No 178
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=96.25 E-value=0.024 Score=39.96 Aligned_cols=25 Identities=20% Similarity=0.455 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
..-++.|+.+|||.|++....|+++
T Consensus 64 k~vll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 64 KPVLLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHH
Confidence 3457788889999999876666554
No 179
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.20 E-value=0.03 Score=37.03 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
..-++.|..+|||.|.+....|+++
T Consensus 26 k~vvv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 26 KPYLLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred CEEEEEEEcCcCHHHHHHHHHHHHH
Confidence 3457888999999999887777665
No 180
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.15 E-value=0.034 Score=42.62 Aligned_cols=68 Identities=21% Similarity=0.419 Sum_probs=53.1
Q ss_pred HhhccCCcEEEEEcC-------CChhHHHHHHHHHhcCCCcEEEEecC---CCCCccCEEEECCeEEeccHHHHHHHH
Q 033445 41 QNSIFSNKIVIFSKS-------YCPYCLRAKRIFADLNEQPFVVELDL---RGRRTVPQIFVNGEHIGGADDLKAAVL 108 (119)
Q Consensus 41 ~~~~~~~~vviy~~~-------~Cp~C~~ak~~L~~~~v~~~~i~id~---~g~~~vP~ifi~g~~iGG~~el~~l~~ 108 (119)
++..+...|.+|--+ -.|||.++.-+|+..+++|++++-.. +...++|-|-.||++|-+.+-+...++
T Consensus 38 k~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~ 115 (281)
T KOG4244|consen 38 KTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLKRRSRNGTLPFIELNGEHIADSDLIEDRLR 115 (281)
T ss_pred hhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccceeeccCCCcceEEeCCeeccccHHHHHHHH
Confidence 345556667777653 25799999999999999999887665 277899999999999999886655433
No 181
>PLN02309 5'-adenylylsulfate reductase
Probab=96.13 E-value=0.018 Score=47.15 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcC-------CCcEEEEec-C-------C-CCCccCEEEE
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADLN-------EQPFVVELD-L-------R-GRRTVPQIFV 92 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~~-------v~~~~i~id-~-------~-g~~~vP~ifi 92 (119)
..-++.|..+||++|+.....++++. +.+..++.| . . +..++|++++
T Consensus 366 k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 366 EPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILL 428 (457)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEE
Confidence 34578999999999999988887652 223355555 2 1 7889999955
No 182
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.046 Score=43.99 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=67.8
Q ss_pred ccchheeeehhhhh-----hhhhcCCCCCCCCcchhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhc---CCCcEE
Q 033445 5 GWQSRFLVEAVGLL-----FFLLLGNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL---NEQPFV 76 (119)
Q Consensus 5 ~~~~~~~~~~~~~~-----~~~~p~~~~d~~~~~~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~---~v~~~~ 76 (119)
|-||..++.+-++- ++..- |-.+.-.+++.+.|+.+-.+....-|..-.|..|..+.+.|.-. +.....
T Consensus 74 gv~FAglPlGHEftSlVLaLlqv~---G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H 150 (520)
T COG3634 74 GVRFAGLPLGHEFTSLVLALLQVG---GHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKH 150 (520)
T ss_pred ceEEecCcccchHHHHHHHHHHhc---CCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCcee
Confidence 45666666665554 22222 32345678999999999999999999887777777776666654 333334
Q ss_pred EEec---------CCCCCccCEEEECCeEEe----ccHHHHHHHHc
Q 033445 77 VELD---------LRGRRTVPQIFVNGEHIG----GADDLKAAVLS 109 (119)
Q Consensus 77 i~id---------~~g~~~vP~ifi~g~~iG----G~~el~~l~~~ 109 (119)
.-+| .++.-+||++|.||+..| +.+++.+-...
T Consensus 151 ~~IdGa~Fq~Evear~IMaVPtvflnGe~fg~GRmtleeilaki~~ 196 (520)
T COG3634 151 TAIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKIDT 196 (520)
T ss_pred EEecchhhHhHHHhccceecceEEEcchhhcccceeHHHHHHHhcC
Confidence 4443 238999999999999886 34555554444
No 183
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.07 E-value=0.028 Score=37.41 Aligned_cols=24 Identities=25% Similarity=0.485 Sum_probs=18.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~ 69 (119)
..-++.|+.+|||.|++....|.+
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~~ 42 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLVE 42 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHHH
Confidence 334667778999999987776653
No 184
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=96.04 E-value=0.018 Score=40.47 Aligned_cols=26 Identities=27% Similarity=0.630 Sum_probs=22.1
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
....++.|+.+|||.|++....|+++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l 75 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRF 75 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHH
Confidence 55669999999999999988888764
No 185
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=95.97 E-value=0.036 Score=39.62 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=19.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
.-++.|+.+|||.|++....|.++
T Consensus 70 ~vvv~FwatwC~~C~~e~p~l~~l 93 (185)
T PRK15412 70 PVLLNVWATWCPTCRAEHQYLNQL 93 (185)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHH
Confidence 346678999999999887777665
No 186
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=95.85 E-value=0.035 Score=46.60 Aligned_cols=64 Identities=9% Similarity=0.181 Sum_probs=39.5
Q ss_pred chhHHHHHHhhccC--CcEEEEEcCCChhHHHHHHHH-------HhcC-CCcEEEEecCC-----------CCCccCEEE
Q 033445 33 DHSVSAFVQNSIFS--NKIVIFSKSYCPYCLRAKRIF-------ADLN-EQPFVVELDLR-----------GRRTVPQIF 91 (119)
Q Consensus 33 ~~~~~~~i~~~~~~--~~vviy~~~~Cp~C~~ak~~L-------~~~~-v~~~~i~id~~-----------g~~~vP~if 91 (119)
.++.++.+++.... .-++.|+.+||+.|++.+... ++++ +....+|+++. +...+|+++
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 35566667665543 335568999999999876542 2222 22335555431 889999995
Q ss_pred E---CCeE
Q 033445 92 V---NGEH 96 (119)
Q Consensus 92 i---~g~~ 96 (119)
+ ||+.
T Consensus 540 ~~~~~G~~ 547 (571)
T PRK00293 540 FFDAQGQE 547 (571)
T ss_pred EECCCCCC
Confidence 5 4554
No 187
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.85 E-value=0.027 Score=44.71 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=32.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-------C--CCcEEEEecCC-------CCCccCEEEE--CCeE
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADL-------N--EQPFVVELDLR-------GRRTVPQIFV--NGEH 96 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~-------~--v~~~~i~id~~-------g~~~vP~ifi--~g~~ 96 (119)
-++.|+.+||++|++....+.+. + +.+..++.+.. +..++|++++ +|+.
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCcc
Confidence 37789999999999987666542 2 22234444432 8999998844 5654
No 188
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=95.84 E-value=0.041 Score=39.34 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=48.1
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCcEEEEec--C-----C-------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELD--L-----R-------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~v~~~~i~id--~-----~-------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+|+...||+|.+++-+|.++|++|..+.++ . . ...++|.+..||..+.....+..++.+
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~ 74 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEE 74 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHH
Confidence 688888999999999999999998755444 1 1 678899999999988888887777654
No 189
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=95.84 E-value=0.028 Score=37.99 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=32.1
Q ss_pred cEEEEEc-CCCh--hHH--H--------HHHHHHhcCCCcEEEEecCC-------CCCccCEE--EECCeEEe
Q 033445 48 KIVIFSK-SYCP--YCL--R--------AKRIFADLNEQPFVVELDLR-------GRRTVPQI--FVNGEHIG 98 (119)
Q Consensus 48 ~vviy~~-~~Cp--~C~--~--------ak~~L~~~~v~~~~i~id~~-------g~~~vP~i--fi~g~~iG 98 (119)
.+++|.. .||+ +|+ . +.+.|+..++.+..+++|+. +..++|++ |-||+.+.
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVIE 101 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEEE
Confidence 4555555 5554 597 2 23333344555667777764 99999998 55897653
No 190
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.05 Score=38.86 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=25.9
Q ss_pred hHHHHHHhhccCCc--EEEEEcCCChhHHHHHHHHHh
Q 033445 35 SVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 35 ~~~~~i~~~~~~~~--vviy~~~~Cp~C~~ak~~L~~ 69 (119)
++.+..+++....+ ++||..++|+||.+.++-+..
T Consensus 30 ~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~ 66 (182)
T COG2143 30 DVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKN 66 (182)
T ss_pred hhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcc
Confidence 45566666665544 789999999999988876643
No 191
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.03 Score=41.76 Aligned_cols=62 Identities=16% Similarity=0.378 Sum_probs=46.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcCCCcE--EEEecCC-------CCCccCEEEECCeEEec----cHHHHHHH
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPF--VVELDLR-------GRRTVPQIFVNGEHIGG----ADDLKAAV 107 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~--~i~id~~-------g~~~vP~ifi~g~~iGG----~~el~~l~ 107 (119)
...|.||+..+|--|-..-+.|++.|.... .++.... +..++|.||+||+.+-+ .+++....
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~ 84 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESIL 84 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHH
Confidence 456899999999999999999999775432 3333321 88999999999998743 45555543
No 192
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.73 E-value=0.037 Score=34.66 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=18.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
-++.|+.+||+.|.+....|.++
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l 26 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKEL 26 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHH
Confidence 36789999999999888877664
No 193
>PTZ00102 disulphide isomerase; Provisional
Probab=95.66 E-value=0.019 Score=46.13 Aligned_cols=46 Identities=13% Similarity=0.339 Sum_probs=32.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCC--------cEEEEecCC-------CCCccCEEEE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNEQ--------PFVVELDLR-------GRRTVPQIFV 92 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v~--------~~~i~id~~-------g~~~vP~ifi 92 (119)
.-++.|..+||++|++....++++... ...++.+.. +.+++|++++
T Consensus 377 ~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 377 DVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILF 437 (477)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEE
Confidence 457788899999999999888765211 223444432 7889999855
No 194
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.62 E-value=0.024 Score=35.97 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=34.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecCC-------CCC--ccCEEEE
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLR-------GRR--TVPQIFV 92 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~~-------g~~--~vP~ifi 92 (119)
..-++.|..+||+.|...+..|++.. +.+..++.++. |.. ++|++.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEE
Confidence 44577788899999999999998753 22335555542 776 9999976
No 195
>PTZ00102 disulphide isomerase; Provisional
Probab=95.58 E-value=0.044 Score=44.01 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=32.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc-------C--CCcEEEEecCC-------CCCccCEEEE--CCe
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADL-------N--EQPFVVELDLR-------GRRTVPQIFV--NGE 95 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~-------~--v~~~~i~id~~-------g~~~vP~ifi--~g~ 95 (119)
.-++.|..+||++|++....+.+. + +.+..++.+.. +..++|++++ +|+
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 458889999999999887655432 1 22224444442 8899999855 554
No 196
>PRK10357 putative glutathione S-transferase; Provisional
Probab=95.56 E-value=0.072 Score=37.95 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=46.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEE-CCeEEeccHHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFV-NGEHIGGADDLKAAVL 108 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi-~g~~iGG~~el~~l~~ 108 (119)
.+|+...||++.++.-+|+..|++|+.++++.. ...++|++.. +|..+-....+..++.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~ 71 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIE 71 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHH
Confidence 588999999999999999999999987766531 5788999985 6777766666666544
No 197
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.03 Score=38.15 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=26.6
Q ss_pred chhHHHHHHhhccCCcEEEEEc---------CCChhHHHHHHHHHh
Q 033445 33 DHSVSAFVQNSIFSNKIVIFSK---------SYCPYCLRAKRIFAD 69 (119)
Q Consensus 33 ~~~~~~~i~~~~~~~~vviy~~---------~~Cp~C~~ak~~L~~ 69 (119)
-++.++.+++.-+...+.+|.. +|||+|.+|...+.+
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~ 57 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINE 57 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHH
Confidence 4566677777756555555543 799999999988866
No 198
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=95.43 E-value=0.01 Score=46.57 Aligned_cols=67 Identities=21% Similarity=0.383 Sum_probs=46.1
Q ss_pred CcchhHHHHHHhhcc-CCcEEEEEcCCChhHHHHHHHHHhcCCCcEEE----E---ecCC---------CCCccCEE-EE
Q 033445 31 EADHSVSAFVQNSIF-SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVV----E---LDLR---------GRRTVPQI-FV 92 (119)
Q Consensus 31 ~~~~~~~~~i~~~~~-~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i----~---id~~---------g~~~vP~i-fi 92 (119)
.+.+++.+...+... ..=.|-|..|||.+|++..-+.++.|.+...+ . +|.. |.+.+|+| |.
T Consensus 28 t~VeDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~ 107 (468)
T KOG4277|consen 28 TAVEDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFF 107 (468)
T ss_pred hhhhhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEe
Confidence 445566666655543 33477889999999999999999988554322 1 2221 89999999 66
Q ss_pred CCeEE
Q 033445 93 NGEHI 97 (119)
Q Consensus 93 ~g~~i 97 (119)
.|.+.
T Consensus 108 kgd~a 112 (468)
T KOG4277|consen 108 KGDHA 112 (468)
T ss_pred cCCee
Confidence 66655
No 199
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.27 E-value=0.15 Score=35.24 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=18.5
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHh
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~ 69 (119)
...-++.|+.+|||+|++....|.+
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~ 85 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNE 85 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHH
Confidence 3445778889999999986655544
No 200
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.047 Score=41.68 Aligned_cols=62 Identities=32% Similarity=0.503 Sum_probs=44.7
Q ss_pred HHHHHHhhcc---CCcEEEEEcCCChhHHHHHHHHHhcCCCc-----EEEEecCC-------CCCccCEE--EECCeEE
Q 033445 36 VSAFVQNSIF---SNKIVIFSKSYCPYCLRAKRIFADLNEQP-----FVVELDLR-------GRRTVPQI--FVNGEHI 97 (119)
Q Consensus 36 ~~~~i~~~~~---~~~vviy~~~~Cp~C~~ak~~L~~~~v~~-----~~i~id~~-------g~~~vP~i--fi~g~~i 97 (119)
...+.+++-. ..-+|=|+.+||..|+++--+++.+--.| ..+++|+- |....|+. |.||..|
T Consensus 9 d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 9 DSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred cHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEecCeEe
Confidence 3444444433 34577899999999999999999875333 36666652 89999987 6799766
No 201
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.15 E-value=0.14 Score=31.47 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHhcCCC---cEEEEecCC---CCCccCEEEE-CCeEEeccHHHHHHH
Q 033445 57 CPYCLRAKRIFADLNEQ---PFVVELDLR---GRRTVPQIFV-NGEHIGGADDLKAAV 107 (119)
Q Consensus 57 Cp~C~~ak~~L~~~~v~---~~~i~id~~---g~~~vP~ifi-~g~~iGG~~el~~l~ 107 (119)
-|.|-++..+|+-.+.+ +..+..+.. ....+|.+.. +++.+.|+.++.+++
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n~~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNNPWLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCCCCcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 68999999999998877 555544322 6779999999 999999999998875
No 202
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.13 E-value=0.039 Score=37.30 Aligned_cols=33 Identities=15% Similarity=0.525 Sum_probs=27.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEe
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVEL 79 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~i 79 (119)
..+++|+||.|+-|+-+.++|.++..+|..+.+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 458999999999999999999998877764443
No 203
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=95.11 E-value=0.12 Score=34.85 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=17.9
Q ss_pred CcEEEEEcC-CChhHHHHHHHHHhc
Q 033445 47 NKIVIFSKS-YCPYCLRAKRIFADL 70 (119)
Q Consensus 47 ~~vviy~~~-~Cp~C~~ak~~L~~~ 70 (119)
..|+.|..+ |||.|.+....|+++
T Consensus 30 ~~vv~f~~~~~Cp~C~~~~p~l~~l 54 (146)
T PF08534_consen 30 PVVVNFWASAWCPPCRKELPYLNEL 54 (146)
T ss_dssp EEEEEEESTTTSHHHHHHHHHHHHH
T ss_pred eEEEEEEccCCCCcchhhhhhHHhh
Confidence 346777778 999999877666554
No 204
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.15 Score=36.64 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=48.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecC---C---------CCCccCEEEECCe-EEeccHHHHHHHHcc
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDL---R---------GRRTVPQIFVNGE-HIGGADDLKAAVLSG 110 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~---~---------g~~~vP~ifi~g~-~iGG~~el~~l~~~g 110 (119)
++|+.+.+|+|.++.-+|.++|++|+.+.++. . ....||++..++. .+-....|.+++++.
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~ 75 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAER 75 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhh
Confidence 57888888999999999999998888555532 1 6889999999875 787777777776653
No 205
>PLN02395 glutathione S-transferase
Probab=95.02 E-value=0.24 Score=35.46 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=48.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC------C-------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL------R-------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~------~-------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+.+|+.+.| .+.++.-+|.+.|++|+.+.++. . ....+|++..+|..+.....+.+++.+
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~ 75 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAE 75 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence 688987765 48999999999999988665542 1 678999999999888888888777664
No 206
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=94.80 E-value=0.14 Score=36.77 Aligned_cols=22 Identities=23% Similarity=0.632 Sum_probs=16.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHh
Q 033445 48 KIVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~ 69 (119)
-++.|+.+|||.|++....+.+
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~ 98 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKS 98 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 4667889999999987665543
No 207
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=94.79 E-value=0.16 Score=37.70 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEec--CC--------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 56 YCPYCLRAKRIFADLNEQPFVVELD--LR--------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 56 ~Cp~C~~ak~~L~~~~v~~~~i~id--~~--------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
.||+|+++-..|...++.|.+-.+| .. ....+|.+-.||+.+-..+.+.+.+++
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEE 83 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHH
Confidence 5999999999999888877644444 22 788999999999999999888877654
No 208
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.035 Score=45.90 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=32.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCcE------EEEecCC-------CCCccCEEEE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPF------VVELDLR-------GRRTVPQIFV 92 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v~~~------~i~id~~-------g~~~vP~ifi 92 (119)
..++-|..|||+||++..-.+++++..+. +-.+|.. ....+|+|+.
T Consensus 386 dVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI~~ 444 (493)
T KOG0190|consen 386 DVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTILF 444 (493)
T ss_pred ceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceEEE
Confidence 44778889999999999999988863332 2233332 5666899866
No 209
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.46 E-value=0.087 Score=35.69 Aligned_cols=58 Identities=22% Similarity=0.439 Sum_probs=29.8
Q ss_pred hHHHHHHhhccC-CcEE-EEEc-------CCChhHHHHHHHHHhc----CCCcE--EEEecCC----------------C
Q 033445 35 SVSAFVQNSIFS-NKIV-IFSK-------SYCPYCLRAKRIFADL----NEQPF--VVELDLR----------------G 83 (119)
Q Consensus 35 ~~~~~i~~~~~~-~~vv-iy~~-------~~Cp~C~~ak~~L~~~----~v~~~--~i~id~~----------------g 83 (119)
+..+.+++...+ .++. +|+. +|||+|.++...+++. ..... .+.+..+ .
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~ 86 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLK 86 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC-
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceee
Confidence 445566654433 4444 4432 6999999999776652 22222 3344211 7
Q ss_pred CCccCEEEE
Q 033445 84 RRTVPQIFV 92 (119)
Q Consensus 84 ~~~vP~ifi 92 (119)
...+|+++-
T Consensus 87 l~~IPTLi~ 95 (119)
T PF06110_consen 87 LKGIPTLIR 95 (119)
T ss_dssp --SSSEEEE
T ss_pred eeecceEEE
Confidence 889999975
No 210
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.42 E-value=0.12 Score=43.08 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=18.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
-++-|+.+|||.|++....|.++
T Consensus 59 VvV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 59 TLIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHH
Confidence 47788899999999987777654
No 211
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.33 E-value=0.29 Score=34.19 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=52.2
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-----------CCCccCEEEECCeEEecc---HHHHHHHHcc
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-----------GRRTVPQIFVNGEHIGGA---DDLKAAVLSG 110 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-----------g~~~vP~ifi~g~~iGG~---~el~~l~~~g 110 (119)
...++++|-.|+|.=|..-.+.++..|.+...++.+.. ...+==+.+|||.+|-|. +++..+++++
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~ 103 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEK 103 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCC
Confidence 34568999999999999999999999877666666543 344555899999999886 6677777665
Q ss_pred c
Q 033445 111 Q 111 (119)
Q Consensus 111 ~ 111 (119)
-
T Consensus 104 p 104 (149)
T COG3019 104 P 104 (149)
T ss_pred C
Confidence 4
No 212
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=94.31 E-value=0.11 Score=33.82 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=19.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
...++.|..+|||.|......|.++
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQL 45 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHH
Confidence 4567888899999999887777654
No 213
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.12 E-value=0.26 Score=35.76 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=17.2
Q ss_pred cCCcEEEEEcCCChhHHHHHH
Q 033445 45 FSNKIVIFSKSYCPYCLRAKR 65 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~ 65 (119)
....|+.|....||+|.+...
T Consensus 37 ~~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcc
Confidence 345699999999999998654
No 214
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=94.01 E-value=0.051 Score=35.03 Aligned_cols=25 Identities=16% Similarity=0.545 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
..-++.|..+|||.|++....++++
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~ 46 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSI 46 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHH
Confidence 3457788889999999887777664
No 215
>PRK11752 putative S-transferase; Provisional
Probab=93.95 E-value=0.46 Score=35.80 Aligned_cols=66 Identities=6% Similarity=0.112 Sum_probs=48.6
Q ss_pred hccCCcEEEEEcCCChhHHHHHHHHHhc------CCCcEEEEecCC-------------CCCccCEEEECC----eEEec
Q 033445 43 SIFSNKIVIFSKSYCPYCLRAKRIFADL------NEQPFVVELDLR-------------GRRTVPQIFVNG----EHIGG 99 (119)
Q Consensus 43 ~~~~~~vviy~~~~Cp~C~~ak~~L~~~------~v~~~~i~id~~-------------g~~~vP~ifi~g----~~iGG 99 (119)
....+.+.+|+.+ +|+|.++.-+|+++ +++|+.+.++-. ...+||++..++ ..+..
T Consensus 39 ~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~E 117 (264)
T PRK11752 39 PVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFE 117 (264)
T ss_pred CCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEc
Confidence 4556679999965 99999999999997 777775554321 567899998853 46777
Q ss_pred cHHHHHHHHc
Q 033445 100 ADDLKAAVLS 109 (119)
Q Consensus 100 ~~el~~l~~~ 109 (119)
...|..++.+
T Consensus 118 S~AIl~YL~~ 127 (264)
T PRK11752 118 SGAILLYLAE 127 (264)
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 216
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=93.90 E-value=0.54 Score=33.87 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=44.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEE-----CCe--EEeccHHHHHHHH
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFV-----NGE--HIGGADDLKAAVL 108 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi-----~g~--~iGG~~el~~l~~ 108 (119)
+.+|..+ +|+|.++.-+|.++|++|+.+.++.. ....||++.. ||. .+--..-+..++.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 4688776 69999999999999999886666421 6789999987 442 4666666666654
Q ss_pred c
Q 033445 109 S 109 (119)
Q Consensus 109 ~ 109 (119)
+
T Consensus 81 ~ 81 (215)
T PRK13972 81 E 81 (215)
T ss_pred H
Confidence 3
No 217
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.86 E-value=0.32 Score=31.76 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=33.6
Q ss_pred hHHHHHHhhccCCc--EEEEEcCCChhHHHHHH-HHHhcC------CCcEEEEec--CC---------CCCccCEEEE
Q 033445 35 SVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKR-IFADLN------EQPFVVELD--LR---------GRRTVPQIFV 92 (119)
Q Consensus 35 ~~~~~i~~~~~~~~--vviy~~~~Cp~C~~ak~-~L~~~~------v~~~~i~id--~~---------g~~~vP~ifi 92 (119)
+.++.++.+.+..+ ++.+..+||++|++..+ .|..-. -.+..+.+| .. +..++|.+++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~ 82 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAI 82 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEE
Confidence 45556666655444 44455689999998754 443322 123333333 21 7889999844
No 218
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=93.68 E-value=0.15 Score=40.41 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=31.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcC----C---C--cEEEEecCC-----CCCccCEEEE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLN----E---Q--PFVVELDLR-----GRRTVPQIFV 92 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~----v---~--~~~i~id~~-----g~~~vP~ifi 92 (119)
.-++.|..+||+.|+.....++++. . . +..++.+.. +..++|++++
T Consensus 366 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~~~i~~~Pt~~~ 425 (462)
T TIGR01130 366 DVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVEGFPTIKF 425 (462)
T ss_pred eEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCCCCccccCEEEE
Confidence 3466789999999998888777642 1 1 224444432 6788999866
No 219
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=93.17 E-value=0.87 Score=27.63 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=44.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CC-CccCEEEEC-CeEEeccHHHHHHHH
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GR-RTVPQIFVN-GEHIGGADDLKAAVL 108 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~-~~vP~ifi~-g~~iGG~~el~~l~~ 108 (119)
++.+|..++ .|..++-+|...|++|+.+.++-. .. ..+|.+..+ |..+-....+..++.
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa 75 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLA 75 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHH
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhC
Confidence 356676666 889999999999999987766531 34 799999999 999888777776653
No 220
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=93.06 E-value=0.54 Score=34.10 Aligned_cols=29 Identities=3% Similarity=-0.103 Sum_probs=23.0
Q ss_pred hccCCcEEEEEcCCChhHHHHHHHHHhcC
Q 033445 43 SIFSNKIVIFSKSYCPYCLRAKRIFADLN 71 (119)
Q Consensus 43 ~~~~~~vviy~~~~Cp~C~~ak~~L~~~~ 71 (119)
+.....++-|..+||+.|+.-.-++++++
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~ 85 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIK 85 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHH
Confidence 34555788999999999998887777653
No 221
>smart00594 UAS UAS domain.
Probab=92.74 E-value=0.73 Score=30.63 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=35.3
Q ss_pred chhHHHHHHhhccCC--cEEEEEcCCChhHHHHHH-HHHhcC------CCcEE--EEecCC---------CCCccCEEEE
Q 033445 33 DHSVSAFVQNSIFSN--KIVIFSKSYCPYCLRAKR-IFADLN------EQPFV--VELDLR---------GRRTVPQIFV 92 (119)
Q Consensus 33 ~~~~~~~i~~~~~~~--~vviy~~~~Cp~C~~ak~-~L~~~~------v~~~~--i~id~~---------g~~~vP~ifi 92 (119)
..+.++.++.+.+.. .++.+..+||++|.+..+ .|..-. -.+.. ++++.. +..++|.+.+
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 346666677666653 355666789999997554 233221 12333 233221 7889999955
No 222
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=92.55 E-value=0.14 Score=31.89 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=19.8
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
...-++.|..+|||.|.+....|.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHH
Confidence 34557888889999999777666654
No 223
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=92.21 E-value=0.13 Score=31.27 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
|++|..+.||+|......|.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5789999999999999999885
No 224
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.36 Score=40.05 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=43.0
Q ss_pred HHHHhhccCCc--EEEEEcCCChhHHH-------HHHHHHhcCCCcEEEEecCC---------CCCccCEE--EECCeE-
Q 033445 38 AFVQNSIFSNK--IVIFSKSYCPYCLR-------AKRIFADLNEQPFVVELDLR---------GRRTVPQI--FVNGEH- 96 (119)
Q Consensus 38 ~~i~~~~~~~~--vviy~~~~Cp~C~~-------ak~~L~~~~v~~~~i~id~~---------g~~~vP~i--fi~g~~- 96 (119)
+.+.+.+..+. +|-|..|||.+|++ |-..|.+.+-......+|.. +.+.+|++ |.||+.
T Consensus 33 dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~ 112 (493)
T KOG0190|consen 33 DNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSA 112 (493)
T ss_pred ccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcc
Confidence 34555555555 46788999999984 44555554323334444432 89999998 558874
Q ss_pred ---Eec--cHHHHHHHHc
Q 033445 97 ---IGG--ADDLKAAVLS 109 (119)
Q Consensus 97 ---iGG--~~el~~l~~~ 109 (119)
-|+ .+.+..+++.
T Consensus 113 ~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 113 QDYNGPREADGIVKWLKK 130 (493)
T ss_pred eeccCcccHHHHHHHHHh
Confidence 243 2455555443
No 225
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=91.71 E-value=0.24 Score=33.10 Aligned_cols=24 Identities=25% Similarity=0.485 Sum_probs=17.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~ 69 (119)
..-++.|+.+|||.|++....|.+
T Consensus 18 k~vll~F~atwC~~C~~~~p~l~~ 41 (132)
T cd02964 18 KTVGLYFSASWCPPCRAFTPKLVE 41 (132)
T ss_pred CEEEEEEECCCCchHHHHHHHHHH
Confidence 334667788999999987666643
No 226
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=91.56 E-value=0.22 Score=32.95 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=18.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
..-|+.|..+|||.|.+....|+++
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHH
Confidence 3457788889999999876666554
No 227
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=91.40 E-value=0.73 Score=32.71 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=21.9
Q ss_pred hccCCcEE-EEEcCCChhHH----HHHHHHHhcCCC---cEEEEe
Q 033445 43 SIFSNKIV-IFSKSYCPYCL----RAKRIFADLNEQ---PFVVEL 79 (119)
Q Consensus 43 ~~~~~~vv-iy~~~~Cp~C~----~ak~~L~~~~v~---~~~i~i 79 (119)
.....-|. -|+..|||.|+ ..+++++++.-. +++|-+
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfV 74 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFV 74 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEE
Confidence 33343344 45669999999 466666665433 554443
No 228
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.34 E-value=0.2 Score=34.62 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=21.6
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
....|+.|+...||+|.+....+.++
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHH
Confidence 45669999999999999988877654
No 229
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.29 E-value=0.19 Score=30.75 Aligned_cols=43 Identities=23% Similarity=0.593 Sum_probs=29.0
Q ss_pred EcCCChhHHHHHHHHHhcC------CCcEEEEec-CC-------C--CCccCEEE--ECCe
Q 033445 53 SKSYCPYCLRAKRIFADLN------EQPFVVELD-LR-------G--RRTVPQIF--VNGE 95 (119)
Q Consensus 53 ~~~~Cp~C~~ak~~L~~~~------v~~~~i~id-~~-------g--~~~vP~if--i~g~ 95 (119)
..+|||+|.+....|.+.. +....++.. .. + ...+|.+. .+++
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGK 100 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcc
Confidence 5999999999988887753 223355553 22 5 67888776 4554
No 230
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=0.44 Score=35.04 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=19.0
Q ss_pred CCCccCEEEECCeEEeccHHHHH
Q 033445 83 GRRTVPQIFVNGEHIGGADDLKA 105 (119)
Q Consensus 83 g~~~vP~ifi~g~~iGG~~el~~ 105 (119)
|...+|++||+|+.+.|.-++.+
T Consensus 212 gv~gTPt~~v~~~~~~g~~~~~~ 234 (244)
T COG1651 212 GVNGTPTFIVNGKLVPGLPDLDE 234 (244)
T ss_pred CCCcCCeEEECCeeecCCCCHHH
Confidence 89999999999998888755433
No 231
>PTZ00057 glutathione s-transferase; Provisional
Probab=90.83 E-value=2.5 Score=30.23 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=49.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEec---------------C-CCCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD---------------L-RGRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id---------------~-~g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
.+++|..+..+.|.+++-+|+..|++|+.+.++ . .....+|.+.+||..+....-+..++.+
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~ 81 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSK 81 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence 378898888999999999999999998866443 1 1677899999999888877777666543
No 232
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=90.38 E-value=2.6 Score=28.28 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=30.9
Q ss_pred cEEEEEc--CCCh---hHHHHHHHHHhcC--CCcEEEEecC------C------CCC--ccCEE--EECCe
Q 033445 48 KIVIFSK--SYCP---YCLRAKRIFADLN--EQPFVVELDL------R------GRR--TVPQI--FVNGE 95 (119)
Q Consensus 48 ~vviy~~--~~Cp---~C~~ak~~L~~~~--v~~~~i~id~------~------g~~--~vP~i--fi~g~ 95 (119)
-+|.|.. |||. +|++...-+.... +..-.|+.+. . +.. .+|+| |.+|+
T Consensus 21 vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~ 91 (116)
T cd03007 21 SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGD 91 (116)
T ss_pred EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCC
Confidence 3678999 8888 8888775554432 2233555531 1 777 99988 55773
No 233
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=90.27 E-value=0.29 Score=37.02 Aligned_cols=26 Identities=23% Similarity=0.476 Sum_probs=22.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCC
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQ 73 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~ 73 (119)
-|.+|+..+|.-|..+.+.|.++-.+
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~ 69 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADD 69 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccC
Confidence 36799999999999999999997533
No 234
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=2.1 Score=31.61 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=50.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
+.++|+.+.-|.|.++.-.+..+|++++.+.++.. ...++|++.-+|-.+-....+..++.+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ 76 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAE 76 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHH
Confidence 46899999999999999999999999886655421 688999999998888777777666544
No 235
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=89.78 E-value=3.2 Score=25.51 Aligned_cols=58 Identities=5% Similarity=-0.030 Sum_probs=42.1
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCcEEEEecC---------C----------CCCccCEEEECCeEEeccHHHHHHHH
Q 033445 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDL---------R----------GRRTVPQIFVNGEHIGGADDLKAAVL 108 (119)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~---------~----------g~~~vP~ifi~g~~iGG~~el~~l~~ 108 (119)
+|.-..-+.|.+++-+|...|++++.+.++- . -..++|.+..||..+.-...+..++.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHh
Confidence 3444445788899999999999988666542 0 12489999999988877777776654
No 236
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=89.61 E-value=0.54 Score=30.40 Aligned_cols=28 Identities=14% Similarity=0.443 Sum_probs=17.6
Q ss_pred hhccCCcEEEEEcC-CChhHHHHHHHHHh
Q 033445 42 NSIFSNKIVIFSKS-YCPYCLRAKRIFAD 69 (119)
Q Consensus 42 ~~~~~~~vviy~~~-~Cp~C~~ak~~L~~ 69 (119)
++.....++.|... |||.|.+...-|.+
T Consensus 22 ~l~gk~~vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 22 DLKGKPVVLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp GGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred HHCCCcEEEEEeCccCccccccchhHHHH
Confidence 33333445566666 99999866655554
No 237
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=88.72 E-value=1.3 Score=36.84 Aligned_cols=57 Identities=5% Similarity=0.055 Sum_probs=37.8
Q ss_pred HHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEecCC-------CCCccCEEEE
Q 033445 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLR-------GRRTVPQIFV 92 (119)
Q Consensus 36 ~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~~-------g~~~vP~ifi 92 (119)
+++.+.++.++-.+++|..+.|++|.+++++|+++. +.+..++.... +...+|.+.+
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVAL 425 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEE
Confidence 444455544455677898899999999999999863 22223332211 6678899977
No 238
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=87.84 E-value=0.59 Score=32.04 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=13.3
Q ss_pred EEEEEcCCChhHHHHHH
Q 033445 49 IVIFSKSYCPYCLRAKR 65 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~ 65 (119)
++.|..+|||.|.+...
T Consensus 26 vv~~~as~C~~c~~~~~ 42 (153)
T TIGR02540 26 LVVNVASECGFTDQNYR 42 (153)
T ss_pred EEEEeCCCCCchhhhHH
Confidence 67888899999976544
No 239
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=87.28 E-value=2.7 Score=27.24 Aligned_cols=57 Identities=16% Similarity=0.341 Sum_probs=31.8
Q ss_pred EEEEcC-CChhH------HHHHHHHHhc-----C-CC--cEEEEecCC---------------CCCccCEEEECCeEEe-
Q 033445 50 VIFSKS-YCPYC------LRAKRIFADL-----N-EQ--PFVVELDLR---------------GRRTVPQIFVNGEHIG- 98 (119)
Q Consensus 50 viy~~~-~Cp~C------~~ak~~L~~~-----~-v~--~~~i~id~~---------------g~~~vP~ifi~g~~iG- 98 (119)
+||+.. -|+-| +...+||+.. . .+ +..|++... .---+|.|.+||+.||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 467664 36655 4666777653 1 22 336666432 5666899999999997
Q ss_pred ccHHHHHH
Q 033445 99 GADDLKAA 106 (119)
Q Consensus 99 G~~el~~l 106 (119)
|.-.|+..
T Consensus 81 Gnp~LK~I 88 (93)
T PF07315_consen 81 GNPQLKDI 88 (93)
T ss_dssp SS--HHHH
T ss_pred CCccHHHH
Confidence 55555544
No 240
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=86.96 E-value=2.4 Score=27.32 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=34.2
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-CCCccCEEEE
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-GRRTVPQIFV 92 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-g~~~vP~ifi 92 (119)
.+.+.+.++..+-.+++|+.+. ++|.+++++|++..--...|.+... .....|.+.+
T Consensus 9 qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~~~P~~~i 66 (94)
T cd02974 9 QLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDERKPSFSI 66 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCCCCCEEEE
Confidence 3444455555566677787776 9999999999986421112222111 1124798877
No 241
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=86.66 E-value=0.71 Score=31.63 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=15.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
.-++.|..+||| |.+....|.++
T Consensus 24 ~vvl~fwatwC~-C~~e~p~l~~l 46 (152)
T cd00340 24 VLLIVNVASKCG-FTPQYEGLEAL 46 (152)
T ss_pred EEEEEEEcCCCC-chHHHHHHHHH
Confidence 345668889999 98766655553
No 242
>PRK10542 glutathionine S-transferase; Provisional
Probab=86.62 E-value=4.5 Score=28.43 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=41.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEecC---------C-----CCCccCEEEE-CCeEEeccHHHHHHHHc
Q 033445 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDL---------R-----GRRTVPQIFV-NGEHIGGADDLKAAVLS 109 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~---------~-----g~~~vP~ifi-~g~~iGG~~el~~l~~~ 109 (119)
.+|+.+ .+.+.++.-+|.++|++|+.+.++- . ....+|++.+ ||..|-....+.+++.+
T Consensus 2 ~l~~~~-~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~ 75 (201)
T PRK10542 2 KLFYKP-GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLAD 75 (201)
T ss_pred ceeecc-cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHH
Confidence 356554 2346778889999999988555442 1 5688999987 66788777777776643
No 243
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=86.44 E-value=1.1 Score=29.88 Aligned_cols=24 Identities=29% Similarity=0.629 Sum_probs=16.8
Q ss_pred CcEEEEE-cCCChhHHHHHHHHHhc
Q 033445 47 NKIVIFS-KSYCPYCLRAKRIFADL 70 (119)
Q Consensus 47 ~~vviy~-~~~Cp~C~~ak~~L~~~ 70 (119)
..|++|. ..|||.|.+-..-|.++
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~ 49 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKL 49 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHH
Confidence 3455554 68999999876666654
No 244
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=85.72 E-value=2.2 Score=28.99 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=13.2
Q ss_pred CCCccCEEEECCeEE--eccH
Q 033445 83 GRRTVPQIFVNGEHI--GGAD 101 (119)
Q Consensus 83 g~~~vP~ifi~g~~i--GG~~ 101 (119)
|...+|.++|||+.+ |.|-
T Consensus 69 G~e~LPitlVdGeiv~~G~YP 89 (123)
T PF06953_consen 69 GAEALPITLVDGEIVKTGRYP 89 (123)
T ss_dssp -GGG-SEEEETTEEEEESS--
T ss_pred CcccCCEEEECCEEEEecCCC
Confidence 888999999999977 5553
No 245
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=85.53 E-value=7.2 Score=25.81 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=33.6
Q ss_pred HHhhccCCcEEEEEcCC-ChhHHHHHHHHHhc----C--CCcEEEEecCC------------CCCccCEEEE--CCeEE
Q 033445 40 VQNSIFSNKIVIFSKSY-CPYCLRAKRIFADL----N--EQPFVVELDLR------------GRRTVPQIFV--NGEHI 97 (119)
Q Consensus 40 i~~~~~~~~vviy~~~~-Cp~C~~ak~~L~~~----~--v~~~~i~id~~------------g~~~vP~ifi--~g~~i 97 (119)
+.+.-...+++||=-++ ||=...|.+-|++. . ++++.+++-+. =...-||+++ ||+.+
T Consensus 13 i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 13 ILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVV 91 (105)
T ss_dssp HHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEE
T ss_pred HHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEE
Confidence 33334567788887765 99999998887764 2 56677776442 3566788866 88876
No 246
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=85.40 E-value=2.9 Score=28.90 Aligned_cols=65 Identities=15% Similarity=0.395 Sum_probs=45.6
Q ss_pred chhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcC--CC----cEEEEecCC-------CCCccCEE--EECCeEE
Q 033445 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN--EQ----PFVVELDLR-------GRRTVPQI--FVNGEHI 97 (119)
Q Consensus 33 ~~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~--v~----~~~i~id~~-------g~~~vP~i--fi~g~~i 97 (119)
..++-+.|......--|+=|+..|-|.|.+.-.+|.+.- +. .+.+++|+- +....|++ |.|++|+
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 455566666666666677899999999999999998753 22 345666653 55556655 7788876
No 247
>PTZ00256 glutathione peroxidase; Provisional
Probab=85.30 E-value=0.87 Score=32.39 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=14.1
Q ss_pred EEEEcCCChhHHHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRIFA 68 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~L~ 68 (119)
++|..+|||.|.+-...|+
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 4578999999997554444
No 248
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=1.2 Score=35.22 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=33.6
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhcC----CCcEEEEec--CC-------CCCccCEEEE
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELD--LR-------GRRTVPQIFV 92 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~~----v~~~~i~id--~~-------g~~~vP~ifi 92 (119)
...-++.|..+||.+|.+....+.+.. .......+| +. +...+|++.+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKV 107 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEE
Confidence 456689999999999998887776542 222233333 32 8999999965
No 249
>PTZ00056 glutathione peroxidase; Provisional
Probab=85.05 E-value=1 Score=32.70 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
..-++.|..+|||.|.+-...|.++
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~l 64 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNRL 64 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHH
Confidence 3447788889999999654444443
No 250
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=83.74 E-value=5.4 Score=30.48 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=33.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEecC-----C-CCCccCEEEE--CCeEEecc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDL-----R-GRRTVPQIFV--NGEHIGGA 100 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~i~id~-----~-g~~~vP~ifi--~g~~iGG~ 100 (119)
||-+..+++|.|..+...|..+- +.|..|.... . ....+|+|++ +|+.++.+
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtllvYk~G~l~~~~ 214 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPTLLVYKNGDLIGNF 214 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEEEEEETTEEEEEE
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCEEEEEECCEEEEeE
Confidence 55566799999999999998763 2233333322 1 6678999966 99877654
No 251
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=83.45 E-value=2.8 Score=29.90 Aligned_cols=49 Identities=24% Similarity=0.473 Sum_probs=23.6
Q ss_pred EEEEEcCCChhHHHHHH-HHHhc------CCCcEEEEecCC-----------------CCCccCEEEE---CCeEE
Q 033445 49 IVIFSKSYCPYCLRAKR-IFADL------NEQPFVVELDLR-----------------GRRTVPQIFV---NGEHI 97 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~-~L~~~------~v~~~~i~id~~-----------------g~~~vP~ifi---~g~~i 97 (119)
++-.+.+||.+|+...+ .++.- +-.|..|.+|.. |..+.|...+ +|+.+
T Consensus 41 fl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 41 FLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred EEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 33445689999996654 22211 122445555542 7788998755 66655
No 252
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=83.08 E-value=1.3 Score=29.32 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCChh-HHHHHHHHHh
Q 033445 46 SNKIVIFSKSYCPY-CLRAKRIFAD 69 (119)
Q Consensus 46 ~~~vviy~~~~Cp~-C~~ak~~L~~ 69 (119)
..-|+.|..+|||. |.+....|.+
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHH
Confidence 34577888899997 9866555554
No 253
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=82.76 E-value=1.8 Score=29.02 Aligned_cols=21 Identities=19% Similarity=0.575 Sum_probs=14.3
Q ss_pred EEEEE-cCCChhHHHHHHHHHh
Q 033445 49 IVIFS-KSYCPYCLRAKRIFAD 69 (119)
Q Consensus 49 vviy~-~~~Cp~C~~ak~~L~~ 69 (119)
|+.|. .+|||.|.+...-|.+
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHH
Confidence 44454 7899999976555544
No 254
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=82.76 E-value=1.6 Score=32.87 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=17.9
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHh
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~ 69 (119)
...-|+.|+.+|||.|.+-...|.+
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~ 123 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSH 123 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHH
Confidence 4455788999999999865544443
No 255
>PLN02412 probable glutathione peroxidase
Probab=82.55 E-value=1.5 Score=30.66 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=14.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHH
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFA 68 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~ 68 (119)
.-|+.|+.+|||.|.+...-|.
T Consensus 31 ~vlv~f~a~~C~~c~~e~~~l~ 52 (167)
T PLN02412 31 VLLIVNVASKCGLTDSNYKELN 52 (167)
T ss_pred EEEEEEeCCCCCChHHHHHHHH
Confidence 3455688999999996433333
No 256
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=81.73 E-value=6.2 Score=25.46 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=37.9
Q ss_pred EEEcCCChhHHHHHHHHHhcCC--CcEEEEec-CC-------------CCCccCEEEECCe-EEeccHHHHHHHHc
Q 033445 51 IFSKSYCPYCLRAKRIFADLNE--QPFVVELD-LR-------------GRRTVPQIFVNGE-HIGGADDLKAAVLS 109 (119)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~v--~~~~i~id-~~-------------g~~~vP~ifi~g~-~iGG~~el~~l~~~ 109 (119)
||.-..||+|....+++.++.. ....+++. +. ...+.-.+.-+|+ ...|.+-+..+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 3556789999999999999863 23345541 11 2223333333776 88899888777654
No 257
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.45 E-value=3.6 Score=30.18 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=38.7
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCcEEEEec------CC--------CCCccCEEEECCeEEeccHHHHHHHHcc
Q 033445 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELD------LR--------GRRTVPQIFVNGEHIGGADDLKAAVLSG 110 (119)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~v~~~~i~id------~~--------g~~~vP~ifi~g~~iGG~~el~~l~~~g 110 (119)
=|+.+.|.+=.++--.|+ +++|+.+.++ +. ...+||.+.|||..+-..-.+..++++.
T Consensus 10 SYWrSSCswRVRiALaLK--~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 10 SYWRSSCSWRVRIALALK--GIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred hhhcccchHHHHHHHHHc--CCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhc
Confidence 345588887655555554 5565544332 11 5789999999999998777777776654
No 258
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=80.03 E-value=3.8 Score=33.76 Aligned_cols=57 Identities=5% Similarity=0.022 Sum_probs=34.7
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-CCCccCEEEE
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-GRRTVPQIFV 92 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-g~~~vP~ifi 92 (119)
.+.+.+.++..+-.+++|.. .|++|.+++++|+++.--...|.+... .....|.+.+
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~p~~~~ 66 (517)
T PRK15317 9 QLKQYLELLERPIELVASLD-DSEKSAELKELLEEIASLSDKITVEEDSLDVRKPSFSI 66 (517)
T ss_pred HHHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHHHHhCCceEEEEccCCCCCCEEEE
Confidence 34445555555666677766 799999999999987421112222211 1234798876
No 259
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=79.92 E-value=2.4 Score=29.40 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=17.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
...++.|..+|||.|.+...-|.++
T Consensus 26 k~~ll~f~~t~Cp~c~~~~~~l~~l 50 (171)
T cd02969 26 KALVVMFICNHCPYVKAIEDRLNRL 50 (171)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHH
Confidence 3457777889999998655444443
No 260
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=78.98 E-value=4.1 Score=32.31 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=33.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC------C-----cEEEEecCC-------CCCccCEE--EECCeEE
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNE------Q-----PFVVELDLR-------GRRTVPQI--FVNGEHI 97 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v------~-----~~~i~id~~-------g~~~vP~i--fi~g~~i 97 (119)
.+-|..+||||++..+.++++... + .-.++.|.. ....+|++ |.||..+
T Consensus 17 fv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~ 85 (375)
T KOG0912|consen 17 FVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMM 85 (375)
T ss_pred eeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchh
Confidence 456889999999999999987521 1 114444432 67778886 7788644
No 261
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=78.93 E-value=3 Score=26.58 Aligned_cols=67 Identities=24% Similarity=0.391 Sum_probs=38.0
Q ss_pred HHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCCCCCccCEEEECCeEEeccHHHHHHH
Q 033445 38 AFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRGRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 38 ~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
+.++++....+.+||....=---+.+-.+|+....++-++-+|+.|...+|.+ |-|.||.++|....
T Consensus 3 ~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vIplL---~GH~GGan~lA~~i 69 (84)
T PF11760_consen 3 DLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVIPLL---GGHRGGANELARQI 69 (84)
T ss_dssp --HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEEEEE----TTTT-HHHHHHHH
T ss_pred hHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEEEec---cCCcchHHHHHHHH
Confidence 56788888888899986533344445556666556677888898888877765 66788888877654
No 262
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=78.74 E-value=2.3 Score=28.02 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=14.0
Q ss_pred cEEEEE-cCCChhHHHHHHHHHh
Q 033445 48 KIVIFS-KSYCPYCLRAKRIFAD 69 (119)
Q Consensus 48 ~vviy~-~~~Cp~C~~ak~~L~~ 69 (119)
.++.|. ..|||.|.....-|.+
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHH
Confidence 344444 5789999876555544
No 263
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=77.80 E-value=2.9 Score=29.17 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.4
Q ss_pred CCCccCEEEECCeEEeccHHHHHH
Q 033445 83 GRRTVPQIFVNGEHIGGADDLKAA 106 (119)
Q Consensus 83 g~~~vP~ifi~g~~iGG~~el~~l 106 (119)
|..++|+++|||+.+-|.+.+..+
T Consensus 164 gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 164 GVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred CCCcCCeEEECCeeecccccHHHH
Confidence 999999999999999888877654
No 264
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=77.74 E-value=2.9 Score=29.12 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=18.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
+|++|.-..||||-.+...|.++
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l 23 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKL 23 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHH
Confidence 47899999999999887777654
No 265
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.27 E-value=18 Score=23.76 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=38.3
Q ss_pred cCCcEEEEEcCC-ChhH------HHHHHHHHhc-C-----CCc--EEEEec-CC--------------CCCccCEEEECC
Q 033445 45 FSNKIVIFSKSY-CPYC------LRAKRIFADL-N-----EQP--FVVELD-LR--------------GRRTVPQIFVNG 94 (119)
Q Consensus 45 ~~~~vviy~~~~-Cp~C------~~ak~~L~~~-~-----v~~--~~i~id-~~--------------g~~~vP~ifi~g 94 (119)
...++++|+... |.-| +...+||+.. + .++ ..|+|- +. .---+|.|.+++
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivved 82 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVED 82 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcc
Confidence 345688898853 6665 4667777753 1 222 366662 11 566789999999
Q ss_pred eEEe-ccHHHH
Q 033445 95 EHIG-GADDLK 104 (119)
Q Consensus 95 ~~iG-G~~el~ 104 (119)
+.|+ |.-.|+
T Consensus 83 eiVaeGnprlK 93 (106)
T COG4837 83 EIVAEGNPRLK 93 (106)
T ss_pred eEeecCCchHH
Confidence 9996 544343
No 266
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=77.00 E-value=3.8 Score=27.02 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=11.9
Q ss_pred EEEEE-cCCChhHHHHHHHH
Q 033445 49 IVIFS-KSYCPYCLRAKRIF 67 (119)
Q Consensus 49 vviy~-~~~Cp~C~~ak~~L 67 (119)
++.|. ..|||.|.....-|
T Consensus 27 ll~f~~~~~cp~C~~~~~~l 46 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDF 46 (140)
T ss_pred EEEEeCCCCCCchHHHHHHH
Confidence 44444 57899998644444
No 267
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.19 E-value=6.2 Score=32.55 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=40.3
Q ss_pred cCCChhHHHHHHHHHhcC--CC-cEEEEecCC-----------------CCCccCEEEE-------CCeEEeccHHHHHH
Q 033445 54 KSYCPYCLRAKRIFADLN--EQ-PFVVELDLR-----------------GRRTVPQIFV-------NGEHIGGADDLKAA 106 (119)
Q Consensus 54 ~~~Cp~C~~ak~~L~~~~--v~-~~~i~id~~-----------------g~~~vP~ifi-------~g~~iGG~~el~~l 106 (119)
+..|||=.|+.-+-+.+. .+ |.+..|-+. .+..-|.|+- .|..+||++|+.++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 468999999998888864 33 334444321 5677899975 66799999999888
Q ss_pred HHc
Q 033445 107 VLS 109 (119)
Q Consensus 107 ~~~ 109 (119)
.+.
T Consensus 81 ~~~ 83 (452)
T cd05295 81 AES 83 (452)
T ss_pred HHH
Confidence 653
No 268
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=75.40 E-value=5.4 Score=28.40 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=14.4
Q ss_pred CCcEEEEE--cCCChhHHHHHHHH
Q 033445 46 SNKIVIFS--KSYCPYCLRAKRIF 67 (119)
Q Consensus 46 ~~~vviy~--~~~Cp~C~~ak~~L 67 (119)
...++||. ..|||.|.+-..-|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l 54 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDL 54 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHH
Confidence 33455555 68999999755444
No 269
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=75.31 E-value=3.2 Score=27.66 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=16.6
Q ss_pred cCCcEEEEEcCC-ChhHHHHHHHHHhc
Q 033445 45 FSNKIVIFSKSY-CPYCLRAKRIFADL 70 (119)
Q Consensus 45 ~~~~vviy~~~~-Cp~C~~ak~~L~~~ 70 (119)
....|+.|...| ||.|.+...-|.++
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~ 52 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKE 52 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 333455556666 79999877666554
No 270
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.83 E-value=6.5 Score=31.11 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=31.0
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEecCC---------CCCccCEEEE
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLR---------GRRTVPQIFV 92 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~~------v~~~~i~id~~---------g~~~vP~ifi 92 (119)
+...++.|..|||++|+.....+++.. .......+|.. +.+.+|++.+
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 445588899999999998866666543 11223334421 7777787744
No 271
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=74.43 E-value=7.5 Score=32.02 Aligned_cols=57 Identities=4% Similarity=0.071 Sum_probs=33.9
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCc--EEEEecCCCCCccCEEEE
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQP--FVVELDLRGRRTVPQIFV 92 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~--~~i~id~~g~~~vP~ifi 92 (119)
.+++.+.++..+-.+++|.. .|++|.+++++|+++.--. ..++....+....|.+.|
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~~~~p~~~~ 67 (515)
T TIGR03140 9 QLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADTLRKPSFTI 67 (515)
T ss_pred HHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCcCCCCeEEE
Confidence 34444555555555666766 7999999999999864211 122222223345688866
No 272
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=72.39 E-value=12 Score=25.13 Aligned_cols=51 Identities=16% Similarity=0.359 Sum_probs=33.1
Q ss_pred ChhHHHHHHHHHhcC-----CCcEEEEecC-C---------CCCccCEEEECCe--------------EEeccHHHHHHH
Q 033445 57 CPYCLRAKRIFADLN-----EQPFVVELDL-R---------GRRTVPQIFVNGE--------------HIGGADDLKAAV 107 (119)
Q Consensus 57 Cp~C~~ak~~L~~~~-----v~~~~i~id~-~---------g~~~vP~ifi~g~--------------~iGG~~el~~l~ 107 (119)
||+|..+.-+|...- ++...|+..+ + ...+.|+++.++. +|.+.+.+..++
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~L 103 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYL 103 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHH
Confidence 999999999998753 2222333322 1 6889999988553 455556665554
No 273
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=72.09 E-value=4 Score=28.46 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=15.2
Q ss_pred CcEEEEE--cCCChhHHHHHHHHHh
Q 033445 47 NKIVIFS--KSYCPYCLRAKRIFAD 69 (119)
Q Consensus 47 ~~vviy~--~~~Cp~C~~ak~~L~~ 69 (119)
..++||. ..|||.|......|.+
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHH
Confidence 3445444 6899999976655544
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=71.63 E-value=3.7 Score=37.12 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=19.9
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
...-++-|+.+|||.|++....|+++
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHH
Confidence 34457788999999999877777654
No 275
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.47 E-value=36 Score=25.11 Aligned_cols=60 Identities=8% Similarity=-0.001 Sum_probs=46.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEeccHHHHHHHH
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIGGADDLKAAVL 108 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iGG~~el~~l~~ 108 (119)
..++.-+....|.-++.+|.-.+++|++..+... ....+|.+-|||..+.-...+..++.
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLA 73 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLA 73 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHH
Confidence 4555667788999999999999999986655321 67889999999999987777666654
No 276
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=71.15 E-value=4.4 Score=28.17 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=19.9
Q ss_pred CCCccCEEEECCe-EEeccHHHHHH
Q 033445 83 GRRTVPQIFVNGE-HIGGADDLKAA 106 (119)
Q Consensus 83 g~~~vP~ifi~g~-~iGG~~el~~l 106 (119)
|..++|+++|||+ .+-|.+.+..+
T Consensus 164 gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 164 GVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp TCSSSSEEEETTTEEEESCSSHHHH
T ss_pred CCcccCEEEECCEEEEECCCCHHHH
Confidence 9999999999999 77787665544
No 277
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=70.09 E-value=25 Score=25.94 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=22.4
Q ss_pred ccCCcEEEEEcCCChhHHHHHHHHHhcC
Q 033445 44 IFSNKIVIFSKSYCPYCLRAKRIFADLN 71 (119)
Q Consensus 44 ~~~~~vviy~~~~Cp~C~~ak~~L~~~~ 71 (119)
-...++.+|.+..||.|......+-..+
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a~~ 134 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLADN 134 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhcCC
Confidence 3567799999999999998777776544
No 278
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=68.80 E-value=12 Score=29.22 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=47.3
Q ss_pred hhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCCCCCccCEEEECCeEEeccHHHHHHH
Q 033445 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRGRRTVPQIFVNGEHIGGADDLKAAV 107 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~g~~~vP~ifi~g~~iGG~~el~~l~ 107 (119)
++..+.+++.....+.+||....=---+..-.+|+....++-++-+|+.|...+|.+ +-|+||.++|....
T Consensus 39 ~~~~~~~~~~f~~~d~iIfI~A~GIaVR~IAP~l~dK~~DPaVvvvDe~G~~vIsLL---sGH~GGAN~LA~~i 109 (315)
T PRK05788 39 EGFADAFEEAFGCYDALIFIMATGIAVRVIAPLLKDKWSDPAVVVVDEKGKFVISLL---SGHHGGANELARDL 109 (315)
T ss_pred CCHHHHHHHHHhcCCeEEEEEChHHHHHHhchhhhccCcCCCEEEEeCCCCEEEEcc---cCCcccHHHHHHHH
Confidence 457778888888888888876632223333344555445566777787777766644 67899999887664
No 279
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=65.67 E-value=15 Score=24.81 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=28.1
Q ss_pred CChhHHHHH-----------HHHHhcCCCc--EEEEecCC----CCCccCEEEECCeEE
Q 033445 56 YCPYCLRAK-----------RIFADLNEQP--FVVELDLR----GRRTVPQIFVNGEHI 97 (119)
Q Consensus 56 ~Cp~C~~ak-----------~~L~~~~v~~--~~i~id~~----g~~~vP~ifi~g~~i 97 (119)
.|+-|...- ..|..+|++. ..+.++.. ...+.|.|.|||+.+
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQPLESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcccCCCeeeECCEeh
Confidence 788887443 3445556553 35555544 456889999999977
No 280
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=64.32 E-value=17 Score=25.02 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=33.3
Q ss_pred EEEEEc---CCChhHHHHHHHHHhcC-------CCcEEEEecCC-------CCCccCEEEE--CCeEEe
Q 033445 49 IVIFSK---SYCPYCLRAKRIFADLN-------EQPFVVELDLR-------GRRTVPQIFV--NGEHIG 98 (119)
Q Consensus 49 vviy~~---~~Cp~C~~ak~~L~~~~-------v~~~~i~id~~-------g~~~vP~ifi--~g~~iG 98 (119)
.++|.. ..+|.+..+--.|.++- +.+..+++|+. |..++|++++ ||+.+|
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~ 105 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRG 105 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEE
Confidence 455544 24788877776666542 22446677664 9999999855 998775
No 281
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.57 E-value=8.5 Score=28.15 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
...+++|.-..||||.+.-.-+.+.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~ 109 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKK 109 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHH
Confidence 5678999999999997776666663
No 282
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=62.73 E-value=5.7 Score=27.70 Aligned_cols=23 Identities=17% Similarity=0.582 Sum_probs=19.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc
Q 033445 48 KIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
+|.+|+-+.||||-.+...|+++
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l 24 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKL 24 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHH
Confidence 47899999999999888777754
No 283
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=62.22 E-value=7.8 Score=27.89 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=14.3
Q ss_pred cCCcEEEEEcCCChhHHH
Q 033445 45 FSNKIVIFSKSYCPYCLR 62 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ 62 (119)
...-+++|+.+||++|.+
T Consensus 25 GKvvLVvf~AS~C~~~~q 42 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ 42 (183)
T ss_pred CCEEEEEEEeCCCCCcHH
Confidence 345578899999999975
No 284
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=61.55 E-value=13 Score=28.90 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=48.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC-------------CCCccCEEEECCeEEeccHHHHHHHHc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------------GRRTVPQIFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~-------------g~~~vP~ifi~g~~iGG~~el~~l~~~ 109 (119)
.++|--+..=..++++-.+.+.++.++..+++.. ....||++.-+...|-...++..+.++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 7899999999999999999999999876555431 566788765555666788899888776
No 285
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=61.13 E-value=24 Score=25.01 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=40.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecC----------------C--------------------CCCccCEEEE
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL----------------R--------------------GRRTVPQIFV 92 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~----------------~--------------------g~~~vP~ifi 92 (119)
|++=+++.=|+++++...|+++|++|..--... + +..++|.|=+
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgv 82 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGV 82 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEe
Confidence 344455677888888888888888754211110 0 7788888844
Q ss_pred --CCeEEeccHHHHHHHH
Q 033445 93 --NGEHIGGADDLKAAVL 108 (119)
Q Consensus 93 --~g~~iGG~~el~~l~~ 108 (119)
.....+|.|.|....+
T Consensus 83 P~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 83 PVPSKALSGLDSLLSIVQ 100 (156)
T ss_pred cCCccCCCCHHHHHHHhc
Confidence 4556788888877766
No 286
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=60.86 E-value=34 Score=25.97 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=40.1
Q ss_pred cCCChhHHHHHHHHHhcCCCcE---EEEecCC--------CCCccCEEEE--CCeEEeccHHHHH----HHHcccHHHhh
Q 033445 54 KSYCPYCLRAKRIFADLNEQPF---VVELDLR--------GRRTVPQIFV--NGEHIGGADDLKA----AVLSGQLQQLL 116 (119)
Q Consensus 54 ~~~Cp~C~~ak~~L~~~~v~~~---~i~id~~--------g~~~vP~ifi--~g~~iGG~~el~~----l~~~g~L~~~L 116 (119)
.++-+-|......+.-+..+|- ...+... ....+|++.| ||+.||.|-.+.+ -+-.|.|.+.|
T Consensus 168 Edgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL 247 (273)
T KOG3171|consen 168 EDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFL 247 (273)
T ss_pred cCCCchHHHHhhhHHHhhccCCceeEEEeeeccccchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 4677777777777766544443 2222221 5677888755 9999999865433 34457777766
Q ss_pred c
Q 033445 117 G 117 (119)
Q Consensus 117 ~ 117 (119)
+
T Consensus 248 ~ 248 (273)
T KOG3171|consen 248 N 248 (273)
T ss_pred H
Confidence 4
No 287
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=60.64 E-value=6.9 Score=25.55 Aligned_cols=15 Identities=33% Similarity=0.933 Sum_probs=13.8
Q ss_pred cEEEEEcCCChhHHH
Q 033445 48 KIVIFSKSYCPYCLR 62 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ 62 (119)
+|.+|..+-||+|++
T Consensus 2 ~v~vyyESlCPd~~~ 16 (108)
T PF03227_consen 2 NVEVYYESLCPDCRR 16 (108)
T ss_pred EEEEEEEecCHhHHH
Confidence 588999999999987
No 288
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=59.78 E-value=68 Score=23.82 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=43.9
Q ss_pred hhHHHHHHhhccCCcEE-EEEcCCChhHHHHHHHHHh---cCCCcEEEEecCC---------CCCccCEE--EECCe---
Q 033445 34 HSVSAFVQNSIFSNKIV-IFSKSYCPYCLRAKRIFAD---LNEQPFVVELDLR---------GRRTVPQI--FVNGE--- 95 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vv-iy~~~~Cp~C~~ak~~L~~---~~v~~~~i~id~~---------g~~~vP~i--fi~g~--- 95 (119)
++-.+++....++.+|| -|..+.---|+-+-+-|+. ..++-..|.++.. +...+|.| |.||.
T Consensus 72 ~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D 151 (211)
T KOG1672|consen 72 ASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVD 151 (211)
T ss_pred ccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEE
Confidence 34566777776666655 5777775666655555544 3444445555432 89999998 66885
Q ss_pred EEeccHHH
Q 033445 96 HIGGADDL 103 (119)
Q Consensus 96 ~iGG~~el 103 (119)
+|-||++|
T Consensus 152 ~iVGF~dL 159 (211)
T KOG1672|consen 152 YVVGFTDL 159 (211)
T ss_pred EEeeHhhc
Confidence 55677664
No 289
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=59.55 E-value=32 Score=24.52 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=40.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC------------------------------------CCCccCEE--
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR------------------------------------GRRTVPQI-- 90 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~------------------------------------g~~~vP~i-- 90 (119)
|+|=+++.-+.-+++-+.|++++++|+..-+... ...++|+|
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGV 86 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGV 86 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEec
Confidence 5555667788889999999999998873332210 45677887
Q ss_pred EECCeEEeccHHHHHH
Q 033445 91 FVNGEHIGGADDLKAA 106 (119)
Q Consensus 91 fi~g~~iGG~~el~~l 106 (119)
-|..+.++|.|.|..-
T Consensus 87 Pv~s~~L~GlDSL~Si 102 (162)
T COG0041 87 PVQSKALSGLDSLLSI 102 (162)
T ss_pred cCccccccchHHHHHH
Confidence 4477888888877543
No 290
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=59.17 E-value=10 Score=25.94 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.9
Q ss_pred CCCccCEEEECCeEEec
Q 033445 83 GRRTVPQIFVNGEHIGG 99 (119)
Q Consensus 83 g~~~vP~ifi~g~~iGG 99 (119)
|..++|+++|||+.+-+
T Consensus 140 gi~gTPt~iInG~~~~~ 156 (178)
T cd03019 140 KITGVPAFVVNGKYVVN 156 (178)
T ss_pred CCCCCCeEEECCEEEEC
Confidence 89999999999997644
No 291
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=59.15 E-value=11 Score=26.34 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=14.9
Q ss_pred CcEEEEEcCC-ChhHHHHHHHHHh
Q 033445 47 NKIVIFSKSY-CPYCLRAKRIFAD 69 (119)
Q Consensus 47 ~~vviy~~~~-Cp~C~~ak~~L~~ 69 (119)
..|+.|..+| ||.|.+-..-|.+
T Consensus 46 ~vvl~f~~s~~cp~C~~e~~~l~~ 69 (167)
T PRK00522 46 RKVLNIFPSIDTGVCATSVRKFNQ 69 (167)
T ss_pred EEEEEEEcCCCCCccHHHHHHHHH
Confidence 3455666667 9999975555544
No 292
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=57.58 E-value=23 Score=30.16 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=33.5
Q ss_pred HHHHhhccCCcEEEEEcCCChhHHHHHHHHHhc--------CCCcEEEEecCC-----------CCCccCEEEE
Q 033445 38 AFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL--------NEQPFVVELDLR-----------GRRTVPQIFV 92 (119)
Q Consensus 38 ~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~--------~v~~~~i~id~~-----------g~~~vP~ifi 92 (119)
+.+.+...+.-.+=|+.+||-.|+.-++..-+- ++.....|+.+. +.-++|.+++
T Consensus 467 ~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~f 540 (569)
T COG4232 467 QALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLF 540 (569)
T ss_pred HHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEE
Confidence 333333333335568999999999988876531 111223344332 8999999855
No 293
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.10 E-value=12 Score=26.20 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=18.3
Q ss_pred CCCccCEEEECCe-EEeccHHHHHH
Q 033445 83 GRRTVPQIFVNGE-HIGGADDLKAA 106 (119)
Q Consensus 83 g~~~vP~ifi~g~-~iGG~~el~~l 106 (119)
|..++|+++|||+ .+.|..+...+
T Consensus 172 gv~G~Pt~vv~g~~~~~G~~~~~~~ 196 (201)
T cd03024 172 GISGVPFFVFNGKYAVSGAQPPEVF 196 (201)
T ss_pred CCCcCCEEEECCeEeecCCCCHHHH
Confidence 8999999999987 45776554443
No 294
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=56.45 E-value=8.1 Score=22.63 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=26.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC------CCCccCEEEECCe
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR------GRRTVPQIFVNGE 95 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~------g~~~vP~ifi~g~ 95 (119)
+.+|+...=..+.-++.+|++.||+++..+-... |..+.+.|+|..+
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~~g~~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGYAGEPGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS---S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchhhcccCccCceEEEECHH
Confidence 3577777777889999999999998876544332 2333367777653
No 295
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.19 E-value=1e+02 Score=24.37 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=43.4
Q ss_pred cEEEEEcCC-----ChhHHHHHHHHHhcCCCcEEEEec----CCCCCccCEEEECC-eEEeccHHHHHHHHc
Q 033445 48 KIVIFSKSY-----CPYCLRAKRIFADLNEQPFVVELD----LRGRRTVPQIFVNG-EHIGGADDLKAAVLS 109 (119)
Q Consensus 48 ~vviy~~~~-----Cp~C~~ak~~L~~~~v~~~~i~id----~~g~~~vP~ifi~g-~~iGG~~el~~l~~~ 109 (119)
.+.+|+.++ |+.|..+.-++.=.+. ...|... ......+|.+..+. ..|+|++++..+++.
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~~-~l~v~~ssN~~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAGA-PLKVVVSSNPWRSPSGKLPYLITDNGTKVAGPVKIVQFLKK 73 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhCC-CceeEeecCCCCCCCCCCCeEEecCCceeccHHHHHHHHHH
Confidence 466777754 9999999999887663 3323322 22556699997754 999999998887665
No 296
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=54.49 E-value=54 Score=22.68 Aligned_cols=65 Identities=15% Similarity=0.320 Sum_probs=41.9
Q ss_pred chhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcC--CC----cEEEEecCC------CCCccCE---EEECCeEE
Q 033445 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN--EQ----PFVVELDLR------GRRTVPQ---IFVNGEHI 97 (119)
Q Consensus 33 ~~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~--v~----~~~i~id~~------g~~~vP~---ifi~g~~i 97 (119)
.-++-+.|......--|+=|+.+|-|.|.+.-++|.+.. +. .+.+++++- -.-+-|. .|.+++|+
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMFFFRNKHM 87 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEEEETTEEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCCCeEEEEEecCeEE
Confidence 345566666666666678899999999999999998753 11 346677653 2222554 25599887
No 297
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=53.07 E-value=13 Score=22.10 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=16.3
Q ss_pred EEECCeEEeccHH-------HHHHHHcccHHH
Q 033445 90 IFVNGEHIGGADD-------LKAAVLSGQLQQ 114 (119)
Q Consensus 90 ifi~g~~iGG~~e-------l~~l~~~g~L~~ 114 (119)
||+||..+|=.++ ++++-.+|.+..
T Consensus 1 VFlNG~~iG~~~~p~~l~~~lr~~RR~g~i~~ 32 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELVKTLRNLRRSGKISK 32 (63)
T ss_dssp EEETTEEEEEESSHHHHHHHHHHHHHTTSS-T
T ss_pred CEECCEEEEEEcCHHHHHHHHHHHhhccCCcc
Confidence 7999999996643 455555555443
No 298
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=52.02 E-value=22 Score=23.89 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=11.1
Q ss_pred CCcEEEEEc--CCChhHHHHHH
Q 033445 46 SNKIVIFSK--SYCPYCLRAKR 65 (119)
Q Consensus 46 ~~~vviy~~--~~Cp~C~~ak~ 65 (119)
.+.++|+.- .+||.|.....
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~ 51 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQAC 51 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHH
Confidence 334444443 47999975433
No 299
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=51.72 E-value=59 Score=21.39 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=37.5
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHH-HHHHHHhcCCCcEEEEecCC----------CCCccCEEEECCeEEe
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLR-AKRIFADLNEQPFVVELDLR----------GRRTVPQIFVNGEHIG 98 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~-ak~~L~~~~v~~~~i~id~~----------g~~~vP~ifi~g~~iG 98 (119)
.+.+.+.++..+- -+| .|-.|.. ++++|.+.+++-..+.+... ....--.|-.||.|.|
T Consensus 4 ~~~Q~I~~I~~~f--~~~---qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~I~sd~~~~~~sIt~NG~H~g 73 (100)
T PF15643_consen 4 EVRQQIGKIASRF--KIF---QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPFIYSDRLGPQESITTNGRHYG 73 (100)
T ss_pred HHHHHHHHhhccc--Cce---ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCceehhhhhcCCcceeeCCEEEE
Confidence 3444455554443 344 4998874 57899999999887776542 1111266778888876
No 300
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=51.21 E-value=58 Score=22.01 Aligned_cols=65 Identities=12% Similarity=-0.064 Sum_probs=42.5
Q ss_pred cchhHHHHHHhhc-cCCcEEEEEcCCChhHH------------HHHHHHHhcCCCcEEEEecCCCCCccCEEEECCeEE
Q 033445 32 ADHSVSAFVQNSI-FSNKIVIFSKSYCPYCL------------RAKRIFADLNEQPFVVELDLRGRRTVPQIFVNGEHI 97 (119)
Q Consensus 32 ~~~~~~~~i~~~~-~~~~vviy~~~~Cp~C~------------~ak~~L~~~~v~~~~i~id~~g~~~vP~ifi~g~~i 97 (119)
....+.+.++++. ..+.|++.|......+. .+.++|++.+++|..+..-+. +...=..+|+++.|
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~kp-~~~~~~~~~dD~~i 102 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGKP-WCGHDGFYVDDRAI 102 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCCC-cCCCCCceecchhh
Confidence 4556777777763 45667777766666655 889999999999987766542 11122356666655
No 301
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.34 E-value=13 Score=27.99 Aligned_cols=25 Identities=32% Similarity=0.665 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q 033445 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
..+|.+|+-.-||+|--.++-|++.
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHH
Confidence 3458889999999998777777664
No 302
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=48.19 E-value=32 Score=24.73 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=12.5
Q ss_pred cEEEE-E-cCCChhHHHHHHHH
Q 033445 48 KIVIF-S-KSYCPYCLRAKRIF 67 (119)
Q Consensus 48 ~vviy-~-~~~Cp~C~~ak~~L 67 (119)
.+++| . ..|||.|..-..-|
T Consensus 33 ~vvL~F~P~~~~p~C~~el~~l 54 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTELGDV 54 (187)
T ss_pred eEEEEEECCCCCCcCHHHHHHH
Confidence 44444 4 58999998744333
No 303
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=47.45 E-value=35 Score=23.67 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=21.2
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhcC
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADLN 71 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~~ 71 (119)
++...+|+.--.||.|....++|.+..
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D 32 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRD 32 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhc
Confidence 444556666778999999999999874
No 304
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=47.45 E-value=20 Score=24.80 Aligned_cols=22 Identities=23% Similarity=0.313 Sum_probs=17.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADL 70 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~ 70 (119)
|.+|+-.-||||--+...|+++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~ 22 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPAL 22 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHH
Confidence 3578889999999887777764
No 305
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=47.14 E-value=28 Score=23.36 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=19.7
Q ss_pred CCCccCEEEECCeEE-eccHHHHHH
Q 033445 83 GRRTVPQIFVNGEHI-GGADDLKAA 106 (119)
Q Consensus 83 g~~~vP~ifi~g~~i-GG~~el~~l 106 (119)
|...+|.|++|+++| -|-.++.+.
T Consensus 80 gi~k~PAVVfD~~~VVYG~tDV~~A 104 (114)
T PF07511_consen 80 GITKYPAVVFDDRYVVYGETDVARA 104 (114)
T ss_pred CccccCEEEEcCCeEEecccHHHHH
Confidence 999999999999866 677776654
No 306
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=47.09 E-value=38 Score=23.64 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=25.9
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhcCCC
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQ 73 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~~v~ 73 (119)
+..+|++|-.++|+.+..+-.+|..+|..
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 67889999999999999999999998854
No 307
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=46.86 E-value=31 Score=26.30 Aligned_cols=26 Identities=8% Similarity=0.002 Sum_probs=16.0
Q ss_pred hhccCCcEEEEE--cCCChhHHHHHHHH
Q 033445 42 NSIFSNKIVIFS--KSYCPYCLRAKRIF 67 (119)
Q Consensus 42 ~~~~~~~vviy~--~~~Cp~C~~ak~~L 67 (119)
+..+...+++|. ..|||.|..-..-|
T Consensus 94 d~~kgk~vVL~FyPa~ftpvCt~El~~l 121 (261)
T PTZ00137 94 DYFKDSYGLLVFYPLDFTFVCPSELLGF 121 (261)
T ss_pred HHcCCCeEEEEEECCCCCCCCHHHHHHH
Confidence 333455566664 57999999744333
No 308
>PRK13190 putative peroxiredoxin; Provisional
Probab=46.69 E-value=18 Score=26.16 Aligned_cols=23 Identities=13% Similarity=0.414 Sum_probs=15.1
Q ss_pred CCcEEE--EEcCCChhHHHHHHHHH
Q 033445 46 SNKIVI--FSKSYCPYCLRAKRIFA 68 (119)
Q Consensus 46 ~~~vvi--y~~~~Cp~C~~ak~~L~ 68 (119)
...+++ |...|||.|..-..-|.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~ 51 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFS 51 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHH
Confidence 334554 56789999996554444
No 309
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=45.95 E-value=22 Score=25.57 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=14.6
Q ss_pred CcEEE--EEcCCChhHHHHHHHHHh
Q 033445 47 NKIVI--FSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 47 ~~vvi--y~~~~Cp~C~~ak~~L~~ 69 (119)
..+++ |...|||.|..-..-|.+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~ 50 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAK 50 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHH
Confidence 34554 556899999975444433
No 310
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=45.91 E-value=36 Score=20.56 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=20.2
Q ss_pred CCCccCEEEECCeEEecc--HHHHHHHHcc
Q 033445 83 GRRTVPQIFVNGEHIGGA--DDLKAAVLSG 110 (119)
Q Consensus 83 g~~~vP~ifi~g~~iGG~--~el~~l~~~g 110 (119)
.-..-|.+.||++.++.. +.+.+++++|
T Consensus 43 ~C~~gP~v~V~~~~~~~~t~~~i~~~~~~~ 72 (72)
T cd03082 43 RCERAPAALVGQRPVDGATPAAVAAAVEAG 72 (72)
T ss_pred ccCCCCeEEECCEEeCCcCHHHHHHHHhcC
Confidence 566789999999999765 4455555443
No 311
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.90 E-value=12 Score=29.16 Aligned_cols=17 Identities=29% Similarity=0.778 Sum_probs=11.7
Q ss_pred EEEEcCCChhHHHHHHH
Q 033445 50 VIFSKSYCPYCLRAKRI 66 (119)
Q Consensus 50 viy~~~~Cp~C~~ak~~ 66 (119)
++=-|+.||||++-.++
T Consensus 266 ivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 266 IVGKKQTCPYCKEKVDL 282 (328)
T ss_pred eecCCCCCchHHHHhhH
Confidence 34345899999976554
No 312
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=45.07 E-value=20 Score=19.52 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=19.1
Q ss_pred EECCeEEecc--HHHHHHHHcccHHH
Q 033445 91 FVNGEHIGGA--DDLKAAVLSGQLQQ 114 (119)
Q Consensus 91 fi~g~~iGG~--~el~~l~~~g~L~~ 114 (119)
..||+..|=+ ++|+++.++|++..
T Consensus 5 ~~~g~~~GP~s~~el~~l~~~g~i~~ 30 (45)
T PF14237_consen 5 ARNGQQQGPFSLEELRQLISSGEIDP 30 (45)
T ss_pred eCCCeEECCcCHHHHHHHHHcCCCCC
Confidence 4588888854 78999999998754
No 313
>PRK15000 peroxidase; Provisional
Probab=42.17 E-value=45 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=14.1
Q ss_pred cCCcEEEEEcC--CChhHHHHHHHHH
Q 033445 45 FSNKIVIFSKS--YCPYCLRAKRIFA 68 (119)
Q Consensus 45 ~~~~vviy~~~--~Cp~C~~ak~~L~ 68 (119)
+.+.+++|.-+ |||.|..-..-|.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~ 58 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFD 58 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHH
Confidence 34456666555 6888886444343
No 314
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=42.09 E-value=28 Score=24.58 Aligned_cols=21 Identities=19% Similarity=0.596 Sum_probs=16.3
Q ss_pred EEEcCCChhHHHHHHHHHhcC
Q 033445 51 IFSKSYCPYCLRAKRIFADLN 71 (119)
Q Consensus 51 iy~~~~Cp~C~~ak~~L~~~~ 71 (119)
+|+.|.|++|-.....+.++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~ 22 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLK 22 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHHH
Confidence 689999999999988888764
No 315
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=41.91 E-value=47 Score=22.83 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=12.8
Q ss_pred cCCcEEEEEc--CCChhHHHH
Q 033445 45 FSNKIVIFSK--SYCPYCLRA 63 (119)
Q Consensus 45 ~~~~vviy~~--~~Cp~C~~a 63 (119)
+..++++|.. .+||.|..-
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchh
Confidence 3445666666 469999865
No 316
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=41.87 E-value=34 Score=22.96 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=19.3
Q ss_pred CCCccCEEEECCeEE-eccHHHHHH
Q 033445 83 GRRTVPQIFVNGEHI-GGADDLKAA 106 (119)
Q Consensus 83 g~~~vP~ifi~g~~i-GG~~el~~l 106 (119)
|..++|.|++|+++| -|-.++.+.
T Consensus 81 Gi~k~PAVV~D~~~VVYG~~DV~~A 105 (113)
T TIGR03757 81 GVTKIPAVVVDRRYVVYGETDVARA 105 (113)
T ss_pred CCccCCEEEEcCCeEEecCccHHHH
Confidence 999999999999866 576666554
No 317
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=41.59 E-value=19 Score=27.47 Aligned_cols=23 Identities=17% Similarity=0.592 Sum_probs=15.2
Q ss_pred EEEEEcCCChhHHHHHHHH----HhcC
Q 033445 49 IVIFSKSYCPYCLRAKRIF----ADLN 71 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L----~~~~ 71 (119)
|+..+..|||+|...+..| .+.|
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcC
Confidence 3333458899999776554 5555
No 318
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=41.03 E-value=1e+02 Score=20.21 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=37.8
Q ss_pred CCcchhHHHHHHhhccCCcEEEEEc-CCChhHHHHHHHHHhcCCC---cEEEEecCC-----CCCccCEEEECCe
Q 033445 30 TEADHSVSAFVQNSIFSNKIVIFSK-SYCPYCLRAKRIFADLNEQ---PFVVELDLR-----GRRTVPQIFVNGE 95 (119)
Q Consensus 30 ~~~~~~~~~~i~~~~~~~~vviy~~-~~Cp~C~~ak~~L~~~~v~---~~~i~id~~-----g~~~vP~ifi~g~ 95 (119)
+++.+.+++.++++-+-.-++++-- ..- .-....+.+.++... ...+.||+. +...||++++-..
T Consensus 7 SMP~~~L~~l~~~a~~~~~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 7 SMPDASLRNLLKQAERAGVVVVFRGFPDG-SFKPTAKAIQELLRKDDPCPGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEECCCCC-CHHHHHHHHHHHhhccCCCcceeEChhHHhhCCceEcCEEEEEcC
Confidence 3456677777777766544444443 222 334444444443211 146788875 9999999977443
No 319
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=40.52 E-value=83 Score=18.95 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=28.3
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCC
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ 73 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~ 73 (119)
...+.+..+-+..++++|.. .+..+..+...|.+.|..
T Consensus 45 ~~~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 45 SLDDWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 45555666667788999977 677888888888888754
No 320
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.82 E-value=1e+02 Score=23.32 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=42.6
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEec-CC---CCCccCEEEECCeEEeccHHHHHHHHcc
Q 033445 55 SYCPYCLRAKRIFADLNEQPFVVELD-LR---GRRTVPQIFVNGEHIGGADDLKAAVLSG 110 (119)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~v~~~~i~id-~~---g~~~vP~ifi~g~~iGG~~el~~l~~~g 110 (119)
+.-..|-.++.+|+-.+.++.+..-+ .. ....+|.+-+|...+.+|..+.++.+..
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~NaefmSP~G~vPllr~g~~~~aef~pIV~fVeak 91 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANAEFMSPGGKVPLLRIGKTLFAEFEPIVDFVEAK 91 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCccccCCCCCCceeeecchhhhhhhHHHHHHHHh
Confidence 44668999999999888776644332 11 3338999999999999999999887664
No 321
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=37.08 E-value=8.9 Score=29.13 Aligned_cols=56 Identities=16% Similarity=0.352 Sum_probs=36.4
Q ss_pred HHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCC-------cEEEEe--cCC-----CCCccCEEE--ECCe
Q 033445 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ-------PFVVEL--DLR-----GRRTVPQIF--VNGE 95 (119)
Q Consensus 40 i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~-------~~~i~i--d~~-----g~~~vP~if--i~g~ 95 (119)
-.++....=.++|..+|||.|...+..|++.--. .-.+++ ++- -....|+|+ .+|+
T Consensus 34 w~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGe 105 (248)
T KOG0913|consen 34 WKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGE 105 (248)
T ss_pred hhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccc
Confidence 3444555557889999999999999999886311 112332 222 456678884 4664
No 322
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=35.80 E-value=1.5e+02 Score=20.73 Aligned_cols=41 Identities=10% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHhhcc-CCcEEEEEc-CCChhHHHHH-HHHHhcCCCcEEE
Q 033445 37 SAFVQNSIF-SNKIVIFSK-SYCPYCLRAK-RIFADLNEQPFVV 77 (119)
Q Consensus 37 ~~~i~~~~~-~~~vviy~~-~~Cp~C~~ak-~~L~~~~v~~~~i 77 (119)
++..+.=+. ...++||.. +-|.+|.... .+.+++|++...|
T Consensus 89 qqA~d~G~~~g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I 132 (146)
T PF14437_consen 89 QQAYDAGKTVGRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTI 132 (146)
T ss_pred HHHHHhcCccCCeEEEEECcccchHHHHHHHHHHHHcCCCeEEE
Confidence 334443333 556777776 6799999654 4556788775533
No 323
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=35.47 E-value=52 Score=23.55 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=18.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHh
Q 033445 48 KIVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 48 ~vviy~~~~Cp~C~~ak~~L~~ 69 (119)
+|-+|+-.-||||-=+++-|++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~ 23 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCR 23 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHH
Confidence 5779999999999987777764
No 324
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=35.09 E-value=34 Score=23.92 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=16.4
Q ss_pred EEEEEcCCChhHHHHHHHHHh
Q 033445 49 IVIFSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~ 69 (119)
|.+|+-.-||||--+..-|++
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~ 21 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEK 21 (201)
T ss_pred CeEEecCcCccHHHHHHHHHH
Confidence 458899999999977766654
No 325
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=34.68 E-value=67 Score=22.88 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=11.3
Q ss_pred CcEEEEEc--CCChhHHHHHHHH
Q 033445 47 NKIVIFSK--SYCPYCLRAKRIF 67 (119)
Q Consensus 47 ~~vviy~~--~~Cp~C~~ak~~L 67 (119)
..+++|.. .+||.|.....-|
T Consensus 37 k~~lL~F~p~~~~~~C~~e~~~l 59 (199)
T PTZ00253 37 KWVVLFFYPLDFTFVCPTEIIQF 59 (199)
T ss_pred CEEEEEEEcCCCCCcCHHHHHHH
Confidence 34444444 5688877544333
No 326
>PRK13599 putative peroxiredoxin; Provisional
Probab=34.13 E-value=50 Score=24.19 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=13.3
Q ss_pred CCcEE--EEEcCCChhHHHHHHHH
Q 033445 46 SNKIV--IFSKSYCPYCLRAKRIF 67 (119)
Q Consensus 46 ~~~vv--iy~~~~Cp~C~~ak~~L 67 (119)
...++ -|-..|||.|..-...|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l 51 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEF 51 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHH
Confidence 33444 44557999999744333
No 327
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=30.56 E-value=1.4e+02 Score=23.58 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=33.6
Q ss_pred hhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCCCCCccCEEEECCeEEecc
Q 033445 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRGRRTVPQIFVNGEHIGGA 100 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~g~~~vP~ifi~g~~iGG~ 100 (119)
..+..++.+++....-++|..+.=.+..-++++..+.+ +.||+++++||.
T Consensus 46 ~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~~~g-----------------~~yV~~RWlgG~ 95 (326)
T PRK12311 46 HRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAKRSA-----------------QYFVNSRWLGGT 95 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhC-----------------CeeeCCeecCcc
Confidence 45566677777777777777666556666666666655 357788888874
No 328
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=29.69 E-value=2.6e+02 Score=21.38 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=30.8
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHHhcCCC-cEEEEecCC
Q 033445 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQ-PFVVELDLR 82 (119)
Q Consensus 45 ~~~~vviy~~~~Cp~C~~ak~~L~~~~v~-~~~i~id~~ 82 (119)
..+.|.+|+..+|.-.--+|.+|.++... ...|+++..
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 45779999999999999999999987543 557777653
No 329
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=28.94 E-value=43 Score=22.07 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=14.7
Q ss_pred CCCccCEEEECCeEEec
Q 033445 83 GRRTVPQIFVNGEHIGG 99 (119)
Q Consensus 83 g~~~vP~ifi~g~~iGG 99 (119)
.....|.+|.||+.||-
T Consensus 78 kDECTplvF~n~~LvgW 94 (102)
T PF11399_consen 78 KDECTPLVFKNGKLVGW 94 (102)
T ss_pred CCceEEEEEECCEEEEE
Confidence 56789999999999983
No 330
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=28.50 E-value=25 Score=30.02 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=30.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCC----cE-----EEEec-CC--------CCCccCEEEE
Q 033445 47 NKIVIFSKSYCPYCLRAKRIFADLNEQ----PF-----VVELD-LR--------GRRTVPQIFV 92 (119)
Q Consensus 47 ~~vviy~~~~Cp~C~~ak~~L~~~~v~----~~-----~i~id-~~--------g~~~vP~ifi 92 (119)
..+|-|..+||++|++-.-.++++... .. .|+-- +. +.+.+|++..
T Consensus 59 ~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry 122 (606)
T KOG1731|consen 59 AKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRY 122 (606)
T ss_pred hHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence 457888889999999887777765311 11 22221 11 8899999965
No 331
>PRK15320 transcriptional activator SprB; Provisional
Probab=27.98 E-value=2e+02 Score=21.66 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=23.4
Q ss_pred ChhHHHHHHHHHhcCCCcE---EEEecCC-----------CCCccCEEEECCe
Q 033445 57 CPYCLRAKRIFADLNEQPF---VVELDLR-----------GRRTVPQIFVNGE 95 (119)
Q Consensus 57 Cp~C~~ak~~L~~~~v~~~---~i~id~~-----------g~~~vP~ifi~g~ 95 (119)
|..|...-.+|.++...+. ..-+.++ --...|+++|.++
T Consensus 30 ~~t~~~l~~ll~~l~~~p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv~d~ 82 (251)
T PRK15320 30 VKTCNSLTALLHSLSDMPDAGLILALNPHEHVYLFHALLTRLQNRKVLVVADR 82 (251)
T ss_pred hhhhhhHHHHHHHHhhCCCceEEEeeCchhHHHHHHHHHHHcCCCceEEEecc
Confidence 6667777777776643332 3333433 5667788888765
No 332
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=27.65 E-value=94 Score=22.85 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCCccCEE-EECCeEEeccHHHHHHHHccc
Q 033445 83 GRRTVPQI-FVNGEHIGGADDLKAAVLSGQ 111 (119)
Q Consensus 83 g~~~vP~i-fi~g~~iGG~~el~~l~~~g~ 111 (119)
+..++|-| ||+++-.-+..++-+++..-+
T Consensus 110 ~~g~vP~IkFV~DK~~~~l~e~d~ll~~aD 139 (207)
T KOG4700|consen 110 GIGTVPEIKFVGDKALLMLQEMDKLLREAD 139 (207)
T ss_pred ccccCCceEEecchHHHHHHHHHHHHHHhc
Confidence 67777766 999998888877777765543
No 333
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=27.27 E-value=54 Score=21.38 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=14.8
Q ss_pred CCCccCEEEECCeEEeccH
Q 033445 83 GRRTVPQIFVNGEHIGGAD 101 (119)
Q Consensus 83 g~~~vP~ifi~g~~iGG~~ 101 (119)
+....=++||||.++|-+.
T Consensus 60 g~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 60 GNAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp STTEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEECCEEeeeec
Confidence 5555678999999999653
No 334
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=26.31 E-value=1.9e+02 Score=18.82 Aligned_cols=32 Identities=9% Similarity=0.014 Sum_probs=24.8
Q ss_pred hhccCCcEEEEEcCCChhHHHHHHHHHhcCCC
Q 033445 42 NSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ 73 (119)
Q Consensus 42 ~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~ 73 (119)
.+-+..+|++|-..+...+..+-.+|+.+|..
T Consensus 82 ~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~ 113 (128)
T cd01520 82 RLERDPKLLIYCARGGMRSQSLAWLLESLGID 113 (128)
T ss_pred ccCCCCeEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 34567789999876677788888999988863
No 335
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=26.17 E-value=50 Score=25.70 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=28.8
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHH---HHHHHhc
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRA---KRIFADL 70 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~a---k~~L~~~ 70 (119)
..+..+.+.+...++..|-...||.|..+ .+++...
T Consensus 178 ~~K~eL~~~~~~~~~~~Fh~~~~~~~h~~t~~~~W~~~~ 216 (317)
T PF13896_consen 178 RTKKELLELLKNGKARPFHHKVCPQGHGPTNYDRWFSAP 216 (317)
T ss_pred CCHHHHHHHHHhCchhhccccccccCcCCccHHHHhccC
Confidence 44667778888888999999999999986 6777663
No 336
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.43 E-value=1.8e+02 Score=18.16 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=30.4
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChh--HHHHHHHHHhcCCCc
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPY--CLRAKRIFADLNEQP 74 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~--C~~ak~~L~~~~v~~ 74 (119)
.....+.+.++..++||+....+.+ +..+++..++.++++
T Consensus 37 ~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~ 78 (97)
T PF10087_consen 37 KKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPI 78 (97)
T ss_pred cchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcE
Confidence 4445688888888889888887664 678899988877543
No 337
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=53 Score=24.98 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=22.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCc
Q 033445 49 IVIFSKSYCPYCLRAKRIFADLNEQP 74 (119)
Q Consensus 49 vviy~~~~Cp~C~~ak~~L~~~~v~~ 74 (119)
++-|...|.|.|.+....+.++.+.|
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~ky 173 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKY 173 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHh
Confidence 77888999999999998888876554
No 338
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=25.19 E-value=2.1e+02 Score=18.79 Aligned_cols=55 Identities=9% Similarity=0.186 Sum_probs=30.3
Q ss_pred hHHHHHHhhccCCc-EEEEEc-C----CChhHH------HHHHHHHhcCCCcEEE--EecCC---------CCCccCEEE
Q 033445 35 SVSAFVQNSIFSNK-IVIFSK-S----YCPYCL------RAKRIFADLNEQPFVV--ELDLR---------GRRTVPQIF 91 (119)
Q Consensus 35 ~~~~~i~~~~~~~~-vviy~~-~----~Cp~C~------~ak~~L~~~~v~~~~i--~id~~---------g~~~vP~if 91 (119)
+..+.++.+.+..| +.||-. + ||-+|+ .+.+++++ .+... +++.. +..++|.+.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 34555665555444 455555 3 588886 34455543 23322 33221 888999984
Q ss_pred E
Q 033445 92 V 92 (119)
Q Consensus 92 i 92 (119)
+
T Consensus 82 ~ 82 (116)
T cd02991 82 M 82 (116)
T ss_pred E
Confidence 4
No 339
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.19 E-value=2e+02 Score=21.79 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=34.9
Q ss_pred CCCcchhHHHHHHhhccCCcEEEEEcCCC-hhHHHHHHHHHhcCCCcE
Q 033445 29 ATEADHSVSAFVQNSIFSNKIVIFSKSYC-PYCLRAKRIFADLNEQPF 75 (119)
Q Consensus 29 ~~~~~~~~~~~i~~~~~~~~vviy~~~~C-p~C~~ak~~L~~~~v~~~ 75 (119)
+...++...+.+++++...+|.+...+.| ..|..+..++++.++++.
T Consensus 51 ~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i 98 (347)
T cd06340 51 SQGNPDIGATEAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPFV 98 (347)
T ss_pred CCCCHHHHHHHHHHHhccCCceEEecccchHhHHHHHHHHHHhCCCEE
Confidence 33445667778888888877777776666 568888999998887654
No 340
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=25.16 E-value=2.3e+02 Score=19.31 Aligned_cols=62 Identities=10% Similarity=0.095 Sum_probs=34.8
Q ss_pred CCcchhHHHHHHhhccCCcEEEEEc-CCChhHHHHHHHHHhcCCC--cEEEEecCC-----CCCccCEEEE
Q 033445 30 TEADHSVSAFVQNSIFSNKIVIFSK-SYCPYCLRAKRIFADLNEQ--PFVVELDLR-----GRRTVPQIFV 92 (119)
Q Consensus 30 ~~~~~~~~~~i~~~~~~~~vviy~~-~~Cp~C~~ak~~L~~~~v~--~~~i~id~~-----g~~~vP~ifi 92 (119)
+++.+.+++.++++-+-.-++++-- ..-.+ ++..+.+.++... ...+.||+. +...||.+++
T Consensus 8 SMP~~~Lk~l~~~a~~~g~~~VlRG~~~~~~-~~T~~~i~~L~~~~~~~~v~IdP~lF~~f~I~~VPa~V~ 77 (130)
T TIGR02742 8 SMPEPLLKQLLDQAEALGAPLVIRGLLDNGF-KATATRIQSLIKDGGKSGVQIDPQWFKQFDITAVPAFVV 77 (130)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEeCCCCCCH-HHHHHHHHHHHhcCCCCcEEEChHHHhhcCceEcCEEEE
Confidence 3456677777777765544444432 32222 2333333333211 146778875 9999999977
No 341
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=48 Score=24.78 Aligned_cols=18 Identities=22% Similarity=0.687 Sum_probs=15.3
Q ss_pred CCcEEEEEcCCChhHHHH
Q 033445 46 SNKIVIFSKSYCPYCLRA 63 (119)
Q Consensus 46 ~~~vviy~~~~Cp~C~~a 63 (119)
.-+|.+|+-+-||+|.+-
T Consensus 40 ~v~ItlyyEaLCPdc~~F 57 (220)
T KOG3160|consen 40 KVNITLYYEALCPDCSKF 57 (220)
T ss_pred eeEEEEEEEecCccHHHH
Confidence 456999999999999864
No 342
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=25.04 E-value=28 Score=20.65 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=17.6
Q ss_pred ccccchheeeehhhhh-------hhhhcCCCC
Q 033445 3 KRGWQSRFLVEAVGLL-------FFLLLGNAP 27 (119)
Q Consensus 3 ~~~~~~~~~~~~~~~~-------~~~~p~~~~ 27 (119)
-|+||+..++-+.+-+ |++.|=..+
T Consensus 2 ~rg~r~~~~~ggfVg~iG~a~Ypi~~~Pmm~~ 33 (58)
T PF15061_consen 2 LRGWRYALFVGGFVGLIGAALYPIYFRPMMNP 33 (58)
T ss_pred CccccchhhHHHHHHHHHHHHhhhhcccccCh
Confidence 5899999988887765 455554444
No 343
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=24.95 E-value=74 Score=23.67 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=17.4
Q ss_pred cCCChhHHHHHHHHHhcCCC
Q 033445 54 KSYCPYCLRAKRIFADLNEQ 73 (119)
Q Consensus 54 ~~~Cp~C~~ak~~L~~~~v~ 73 (119)
+..||.++++++.|++.++.
T Consensus 153 t~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 153 TSGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred cccCcHHHHHHHHHHHcCCC
Confidence 35699999999999998874
No 344
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=24.88 E-value=18 Score=20.15 Aligned_cols=6 Identities=50% Similarity=1.796 Sum_probs=3.7
Q ss_pred ChhHHH
Q 033445 57 CPYCLR 62 (119)
Q Consensus 57 Cp~C~~ 62 (119)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 677753
No 345
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=24.57 E-value=61 Score=18.03 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=11.9
Q ss_pred CCCccCEEEECCeEEe
Q 033445 83 GRRTVPQIFVNGEHIG 98 (119)
Q Consensus 83 g~~~vP~ifi~g~~iG 98 (119)
....+..|||||+.+-
T Consensus 16 ~~~GI~~V~VNG~~vv 31 (48)
T PF07908_consen 16 PAEGIDYVFVNGQIVV 31 (48)
T ss_dssp --BSEEEEEETTEEEE
T ss_pred cCCCEEEEEECCEEEE
Confidence 4667899999999774
No 346
>PF15616 TerY-C: TerY-C metal binding domain
Probab=24.39 E-value=20 Score=24.68 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=11.3
Q ss_pred EEEcCCChhHHHHHHH
Q 033445 51 IFSKSYCPYCLRAKRI 66 (119)
Q Consensus 51 iy~~~~Cp~C~~ak~~ 66 (119)
+...|+||+|-....+
T Consensus 74 L~g~PgCP~CGn~~~f 89 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAF 89 (131)
T ss_pred hcCCCCCCCCcChhcE
Confidence 4455999999766443
No 347
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=24.37 E-value=1.8e+02 Score=19.81 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=19.1
Q ss_pred CcEEEEEc-CCChhHHHHHHHHHh
Q 033445 47 NKIVIFSK-SYCPYCLRAKRIFAD 69 (119)
Q Consensus 47 ~~vviy~~-~~Cp~C~~ak~~L~~ 69 (119)
..|.+|+. +-|+-|..+.+-|..
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~ 120 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKK 120 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHH
Confidence 67999998 679999988777665
No 348
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=23.04 E-value=1.6e+02 Score=20.17 Aligned_cols=60 Identities=13% Similarity=0.254 Sum_probs=35.9
Q ss_pred hHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCCCCCccCEEEECCeEEeccHHHHHHHH
Q 033445 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRGRRTVPQIFVNGEHIGGADDLKAAVL 108 (119)
Q Consensus 35 ~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~g~~~vP~ifi~g~~iGG~~el~~l~~ 108 (119)
+..+...++...+.|.+.. |-.|...+-+.++ + ....+.|.-++.|-.++|.-||.++..
T Consensus 59 ~l~~~~~~l~~~~gv~v~~---C~~ca~~RGv~~~----------~-~~~~~~~~nl~~g~~lsgL~eLa~~~~ 118 (126)
T COG1553 59 NLIQAWLELLTEQGVPVKL---CVACALRRGVTEE----------E-AERLGLASNLIEGFELSGLGELAEATL 118 (126)
T ss_pred chHHHHHHHHHHcCCcEee---eHHHHHhcCCccc----------h-hhcccchhccccceeeccHHHHHHHHH
Confidence 3344444444444455544 6666554432221 1 245567778999999999998887754
No 349
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=22.86 E-value=1.4e+02 Score=18.04 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.5
Q ss_pred CCCccCEEEECCeEEeccH
Q 033445 83 GRRTVPQIFVNGEHIGGAD 101 (119)
Q Consensus 83 g~~~vP~ifi~g~~iGG~~ 101 (119)
.-..-|.+.|||+.+++.+
T Consensus 51 ~C~~gP~~~v~~~~~~~~~ 69 (80)
T cd03081 51 LCACSPAAMIDGEVHGRVD 69 (80)
T ss_pred ccCCCCEEEECCEEECCCC
Confidence 4667899999999998763
No 350
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=22.73 E-value=73 Score=20.80 Aligned_cols=18 Identities=39% Similarity=0.802 Sum_probs=14.8
Q ss_pred CCCccCEEEECCeEEecc
Q 033445 83 GRRTVPQIFVNGEHIGGA 100 (119)
Q Consensus 83 g~~~vP~ifi~g~~iGG~ 100 (119)
|...-|.|+|||+.+|..
T Consensus 38 g~~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 38 GSAVKPDVYVDGELIGEL 55 (117)
T ss_pred CccccceEEECCEEEEEe
Confidence 556779999999999853
No 351
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=22.62 E-value=1.8e+02 Score=22.73 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=31.5
Q ss_pred ChhHHHHHHHHHhcCCCcEEEEecCCCCCccCEEEECCeEEeccHHHHHHHHcccHHH
Q 033445 57 CPYCLRAKRIFADLNEQPFVVELDLRGRRTVPQIFVNGEHIGGADDLKAAVLSGQLQQ 114 (119)
Q Consensus 57 Cp~C~~ak~~L~~~~v~~~~i~id~~g~~~vP~ifi~g~~iGG~~el~~l~~~g~L~~ 114 (119)
=+-|..+++.|....- + ..-..|.+|.++ .-|-|+++.++++-|.+.+
T Consensus 39 ~~lc~~a~~~L~~e~n------V---~~v~~pvtvcGD-vHGqf~dl~ELfkiGG~~p 86 (319)
T KOG0371|consen 39 SSLCLLAKEILDKEEN------V---QPVNCPVTVCGD-VHGQFHDLIELFKIGGLAP 86 (319)
T ss_pred hhHHHHHHHHHhcccc------c---cccccceEEecC-cchhHHHHHHHHHccCCCC
Confidence 3578889988886430 0 222456666655 4478889988888876643
No 352
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=22.62 E-value=2.8e+02 Score=19.40 Aligned_cols=27 Identities=19% Similarity=0.548 Sum_probs=18.7
Q ss_pred CEEEECCeEEeccHHHHHHHHcccHHHh
Q 033445 88 PQIFVNGEHIGGADDLKAAVLSGQLQQL 115 (119)
Q Consensus 88 P~ifi~g~~iGG~~el~~l~~~g~L~~~ 115 (119)
|.+-.+|..| ....++++.++|+++..
T Consensus 137 ~~~~~~~~~i-SST~IR~~i~~G~i~~a 163 (180)
T cd02064 137 PPVTLDGERV-SSTRIREALAEGDVELA 163 (180)
T ss_pred CcEecCCcEE-cHHHHHHHHHhCCHHHH
Confidence 4333455544 56788999999998864
No 353
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.61 E-value=2e+02 Score=17.74 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=27.7
Q ss_pred ChhHHHHHHHHHhcCCCcEEEEecCCCCCccCEEEECCeEEec
Q 033445 57 CPYCLRAKRIFADLNEQPFVVELDLRGRRTVPQIFVNGEHIGG 99 (119)
Q Consensus 57 Cp~C~~ak~~L~~~~v~~~~i~id~~g~~~vP~ifi~g~~iGG 99 (119)
=.||+++.+.|+++++.++.+ +.|..++ .|++++..+-+
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~---PSGID~~-Siii~~~~~~~ 53 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHM---PSGIDDI-SIIIRDNQLTD 53 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeee---cCCCccE-EEEEEccccch
Confidence 469999999999999887766 4455564 45555555543
No 354
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=22.57 E-value=2.9e+02 Score=20.72 Aligned_cols=48 Identities=6% Similarity=-0.089 Sum_probs=33.3
Q ss_pred CCCcchhHHHHHHhhccCCcEEEEEcCCCh-hHHHHHHHHHhcCCCcEE
Q 033445 29 ATEADHSVSAFVQNSIFSNKIVIFSKSYCP-YCLRAKRIFADLNEQPFV 76 (119)
Q Consensus 29 ~~~~~~~~~~~i~~~~~~~~vviy~~~~Cp-~C~~ak~~L~~~~v~~~~ 76 (119)
+...++...+..++++...+|.+...+.+. .+..+..++++.++++..
T Consensus 46 ~~~~p~~a~~~~~~lv~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~ 94 (333)
T cd06359 46 DGLKPDVAKQAAERLIKRDKVDFVTGVVFSNVLLAVVPPVLESGTFYIS 94 (333)
T ss_pred CCCChHHHHHHHHHHHhhcCCcEEEccCCcHHHHHHHHHHHHcCCeEEe
Confidence 334456677888899877666655556554 578888899998876553
No 355
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=22.46 E-value=1.6e+02 Score=24.48 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=48.5
Q ss_pred CCcchhHHHHHHhhcc--CCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEEecCC---------CCCccCEEEECCe
Q 033445 30 TEADHSVSAFVQNSIF--SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR---------GRRTVPQIFVNGE 95 (119)
Q Consensus 30 ~~~~~~~~~~i~~~~~--~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~id~~---------g~~~vP~ifi~g~ 95 (119)
|.+.+++.+.+.+++. ..+-+|.+|+.=..=....++|++.|++.-.-|+.+. ...-+|.|--+-+
T Consensus 84 A~~aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLGE~IlQl~~~~PsHIV~PAlH~~re 160 (459)
T COG1139 84 AKDAEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLGELILQLAGEPPSHIVAPALHKNRE 160 (459)
T ss_pred eCCHHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEEEccHHHHHHHhcCCCCcceeccccccCHH
Confidence 5567889999999997 7889999999988889999999999865433332221 4455566655544
No 356
>PRK02935 hypothetical protein; Provisional
Probab=22.44 E-value=15 Score=24.44 Aligned_cols=16 Identities=19% Similarity=0.827 Sum_probs=13.9
Q ss_pred CChhHHHHHHHHHhcC
Q 033445 56 YCPYCLRAKRIFADLN 71 (119)
Q Consensus 56 ~Cp~C~~ak~~L~~~~ 71 (119)
.||.|.+..+.|.+.+
T Consensus 72 ~CP~C~K~TKmLGrvD 87 (110)
T PRK02935 72 ICPSCEKPTKMLGRVD 87 (110)
T ss_pred ECCCCCchhhhcccee
Confidence 6999999999998753
No 357
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=22.39 E-value=1.1e+02 Score=19.10 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHhcCCCcEEE
Q 033445 57 CPYCLRAKRIFADLNEQPFVV 77 (119)
Q Consensus 57 Cp~C~~ak~~L~~~~v~~~~i 77 (119)
|.--.-++.+++++|++..+|
T Consensus 29 ~~~~~tvkd~IEsLGVP~tEV 49 (81)
T PF14451_consen 29 FDGGATVKDVIESLGVPHTEV 49 (81)
T ss_pred cCCCCcHHHHHHHcCCChHHe
Confidence 444556788888888775544
No 358
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.93 E-value=80 Score=18.36 Aligned_cols=10 Identities=40% Similarity=1.056 Sum_probs=9.0
Q ss_pred EEEECCeEEe
Q 033445 89 QIFVNGEHIG 98 (119)
Q Consensus 89 ~ifi~g~~iG 98 (119)
.|||||+++|
T Consensus 14 ~V~vdg~~~G 23 (71)
T PF08308_consen 14 EVYVDGKYIG 23 (71)
T ss_pred EEEECCEEec
Confidence 6899999998
No 359
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=20.53 E-value=60 Score=22.76 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=15.5
Q ss_pred CCChhHHHHHHHHHhcCCCcE
Q 033445 55 SYCPYCLRAKRIFADLNEQPF 75 (119)
Q Consensus 55 ~~Cp~C~~ak~~L~~~~v~~~ 75 (119)
+.=|+++++...|+++|+++.
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~ 31 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYE 31 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHHHcCCCEE
Confidence 456788888888888886654
No 360
>PRK13189 peroxiredoxin; Provisional
Probab=20.27 E-value=77 Score=23.25 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=14.2
Q ss_pred cCCcEEE--EEcCCChhHHHHHHHH
Q 033445 45 FSNKIVI--FSKSYCPYCLRAKRIF 67 (119)
Q Consensus 45 ~~~~vvi--y~~~~Cp~C~~ak~~L 67 (119)
+...+++ |-..|||.|..-...|
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l 58 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAF 58 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHH
Confidence 3444555 5568999999643333
No 361
>PRK13191 putative peroxiredoxin; Provisional
Probab=20.24 E-value=81 Score=23.05 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=15.8
Q ss_pred cCCcEEE--EEcCCChhHHHHHHHHHh
Q 033445 45 FSNKIVI--FSKSYCPYCLRAKRIFAD 69 (119)
Q Consensus 45 ~~~~vvi--y~~~~Cp~C~~ak~~L~~ 69 (119)
+...+++ |-.+|||.|..-...|.+
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~ 58 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAK 58 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHH
Confidence 3334554 466899999975555543
No 362
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=20.17 E-value=1.5e+02 Score=22.61 Aligned_cols=63 Identities=14% Similarity=0.333 Sum_probs=36.0
Q ss_pred cchhHHHHHHhhccCCc--EEEEEcCCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCccCEE-EECCeEEeccH
Q 033445 32 ADHSVSAFVQNSIFSNK--IVIFSKSYC-PYCLRAKRIFADLNEQPFVVELDLRGRRTVPQI-FVNGEHIGGAD 101 (119)
Q Consensus 32 ~~~~~~~~i~~~~~~~~--vviy~~~~C-p~C~~ak~~L~~~~v~~~~i~id~~g~~~vP~i-fi~g~~iGG~~ 101 (119)
+.+-+.+..++.+-..+ -|+++...| |+|. ...+|++++ +..-.|...+|++ ++||++--+++
T Consensus 70 aN~~vld~a~e~lp~~r~tpv~aGv~~~DPf~~-~~~~L~~L~------~~gf~gV~NFPTv~~iDG~~R~~lE 136 (276)
T COG5564 70 ANDIVLDMAREVLPVVRQTPVLAGVNGTDPFCR-MVDFLKELK------TAGFSGVQNFPTVGLIDGRMRASLE 136 (276)
T ss_pred ccHHHHHHHHhhCCccccCcceecccCCCcchh-HHHHHHHHH------hcCCcccccCCeeEEecchhhhhHH
Confidence 34566777777764322 346666655 5665 455666664 1111266677777 77887554443
No 363
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=20.16 E-value=2.8e+02 Score=19.33 Aligned_cols=40 Identities=20% Similarity=0.407 Sum_probs=27.7
Q ss_pred CCCcchhHHHHHHhhccCCcEEEEEcCCC-hhHHHHHHHHHh
Q 033445 29 ATEADHSVSAFVQNSIFSNKIVIFSKSYC-PYCLRAKRIFAD 69 (119)
Q Consensus 29 ~~~~~~~~~~~i~~~~~~~~vviy~~~~C-p~C~~ak~~L~~ 69 (119)
...+..+.++++.+ ++..+|.+|++.+= |......+++++
T Consensus 51 ~G~~d~~~~~fl~~-l~~KkV~lF~T~G~~~~s~~~~~~~~~ 91 (160)
T PF12641_consen 51 KGTPDKDMKEFLKK-LKGKKVALFGTAGAGPDSEYAKKILKN 91 (160)
T ss_pred CCCCCHHHHHHHHH-ccCCeEEEEEecCCCCchHHHHHHHHH
Confidence 56677889999998 56778999999653 344444444443
No 364
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=20.15 E-value=3.3e+02 Score=21.31 Aligned_cols=76 Identities=7% Similarity=-0.062 Sum_probs=55.7
Q ss_pred hhHHHHHHhhccCCcEEEEEcCCChhHHHHHHHHHhcCCCcEEEE------------ecCC------------CCCccCE
Q 033445 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVE------------LDLR------------GRRTVPQ 89 (119)
Q Consensus 34 ~~~~~~i~~~~~~~~vviy~~~~Cp~C~~ak~~L~~~~v~~~~i~------------id~~------------g~~~vP~ 89 (119)
=.+.+++-++++..-+.||+-..+..+..+..+.++++++..... +.+. +++++=.
T Consensus 50 f~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~wk~vai 129 (371)
T cd06388 50 FAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWNRFVF 129 (371)
T ss_pred hHHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHHhcCceEEEE
Confidence 366778888999999999999999999999999999987754221 1111 7888888
Q ss_pred EEECCeEEeccHHHHHHHHc
Q 033445 90 IFVNGEHIGGADDLKAAVLS 109 (119)
Q Consensus 90 ifi~g~~iGG~~el~~l~~~ 109 (119)
++..+.-++..+.+.+..+.
T Consensus 130 iYd~~~~~~~lq~l~~~~~~ 149 (371)
T cd06388 130 LYDTDRGYSILQAIMEKAGQ 149 (371)
T ss_pred EecCCccHHHHHHHHHhhHh
Confidence 88656656666666555433
Done!