Query 033447
Match_columns 119
No_of_seqs 156 out of 460
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 23:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_H RPL10, 60S ribosomal pr 100.0 5E-54 1.7E-58 339.1 11.2 110 1-110 102-211 (215)
2 3j0l_J Ribosomal protein L10; 100.0 9.9E-54 3.4E-58 338.2 1.7 110 1-110 100-209 (219)
3 3iz5_I 60S ribosomal protein L 100.0 7.7E-55 2.6E-59 345.4 -11.4 117 1-117 102-218 (224)
4 2zkr_h 60S ribosomal protein L 100.0 2.2E-49 7.4E-54 312.6 7.6 111 1-111 102-212 (214)
5 2pa2_A 60S ribosomal protein L 100.0 1.4E-38 4.8E-43 240.0 6.3 81 1-81 71-151 (151)
6 3j21_N 50S ribosomal protein L 100.0 9.4E-32 3.2E-36 207.8 6.7 70 1-70 99-170 (181)
7 1vq8_H 50S ribosomal protein L 100.0 5.6E-30 1.9E-34 196.4 7.7 69 1-69 100-168 (171)
8 1ffk_F Ribosomal protein L10E; 99.8 1.2E-21 4.3E-26 148.4 7.1 57 11-69 98-154 (157)
9 3r8s_M 50S ribosomal protein L 99.8 1.6E-19 5.4E-24 133.7 6.8 57 10-68 78-134 (136)
10 2ftc_I Mitochondrial ribosomal 99.7 2.3E-18 7.8E-23 124.6 5.6 58 2-63 61-118 (118)
11 3bbo_O Ribosomal protein L16; 99.7 1.4E-18 4.9E-23 128.4 3.1 61 2-67 74-134 (135)
12 2zjr_J 50S ribosomal protein L 99.6 2E-16 6.9E-21 117.7 0.2 55 13-69 83-137 (142)
13 2dsj_A Pyrimidine-nucleoside ( 49.8 18 0.0006 30.5 4.3 29 26-54 378-406 (423)
14 1brw_A PYNP, protein (pyrimidi 46.9 18 0.0006 30.5 3.9 29 26-54 386-414 (433)
15 2eg2_A Nitrogen regulatory pro 42.4 29 0.00099 23.1 3.8 38 32-69 58-96 (112)
16 2ns1_B Nitrogen regulatory pro 41.3 29 0.00098 23.4 3.7 38 32-69 62-100 (116)
17 3h5q_A PYNP, pyrimidine-nucleo 40.8 24 0.00084 29.8 3.8 28 27-54 390-417 (436)
18 2j9c_A GLNK1, hypothetical nit 40.1 33 0.0011 23.2 3.8 38 32-69 60-98 (119)
19 3cbz_A Dishevelled-2; PDZ doma 39.6 29 0.001 22.4 3.4 41 27-68 51-94 (108)
20 2gw8_A PII signal transduction 39.4 32 0.0011 23.0 3.7 38 32-69 60-98 (114)
21 4ap8_A Molybdopterin synthase 38.9 44 0.0015 23.9 4.5 33 22-54 85-117 (135)
22 1wi4_A Synip, syntaxin binding 38.3 22 0.00076 23.2 2.6 29 27-55 59-90 (109)
23 3rpf_A Molybdopterin synthase 38.1 55 0.0019 23.7 4.9 39 22-60 79-121 (148)
24 2wp4_A Molybdopterin-convertin 37.2 46 0.0016 24.0 4.4 39 22-60 88-130 (147)
25 2q5w_E Molybdopterin-convertin 36.7 47 0.0016 24.0 4.4 39 22-60 80-122 (149)
26 1fm0_E Molybdopterin convertin 36.6 47 0.0016 24.0 4.4 39 22-60 82-124 (150)
27 2fcf_A Multiple PDZ domain pro 35.0 47 0.0016 20.8 3.8 27 28-54 58-87 (103)
28 1uou_A Thymidine phosphorylase 34.9 35 0.0012 29.1 3.9 29 26-54 421-450 (474)
29 3pkz_A Recombinase SIN; small 34.3 71 0.0024 21.2 4.7 43 39-86 10-52 (124)
30 3e17_A Tight junction protein 33.0 9.5 0.00032 24.0 0.1 28 27-54 39-69 (88)
31 3bzq_A Nitrogen regulatory pro 32.5 70 0.0024 21.2 4.5 38 32-69 60-98 (114)
32 3ce8_A Putative PII-like nitro 32.5 49 0.0017 23.2 3.8 36 31-68 77-112 (120)
33 2pa1_A PDZ and LIM domain prot 32.1 45 0.0015 20.3 3.2 27 28-54 44-73 (87)
34 2omd_A Molybdopterin-convertin 31.7 44 0.0015 24.3 3.5 39 22-60 86-128 (154)
35 2vsp_A PDZ domain-containing p 31.6 56 0.0019 20.1 3.6 37 28-68 45-84 (91)
36 2iwq_A Multiple PDZ domain pro 31.2 49 0.0017 22.1 3.5 27 28-54 78-107 (123)
37 2ego_A General receptor for ph 30.5 61 0.0021 20.1 3.7 27 28-54 55-84 (96)
38 3nfk_A Tyrosine-protein phosph 30.3 65 0.0022 20.3 3.9 28 28-55 63-93 (107)
39 3mhy_A PII-like protein PZ; PI 29.5 88 0.003 20.9 4.6 37 32-68 58-95 (112)
40 2cs5_A Tyrosine-protein phosph 29.2 53 0.0018 21.3 3.4 43 27-69 60-105 (119)
41 1vb7_A PDZ and LIM domain 2; P 28.7 64 0.0022 20.0 3.6 27 28-54 48-77 (94)
42 2tpt_A Thymidine phosphorylase 28.7 22 0.00076 29.9 1.7 28 27-54 392-420 (440)
43 2o66_A PII protein; regulation 28.1 60 0.0021 22.8 3.7 38 31-68 70-108 (135)
44 2f06_A Conserved hypothetical 27.7 44 0.0015 22.4 2.8 30 29-60 108-137 (144)
45 1hwu_A PII protein; herbaspiri 27.6 71 0.0024 21.1 3.8 38 32-69 58-96 (112)
46 2gzv_A PRKCA-binding protein; 26.6 86 0.0029 20.5 4.1 27 28-54 69-98 (114)
47 2ejy_A 55 kDa erythrocyte memb 26.4 75 0.0026 20.5 3.7 13 28-40 55-67 (97)
48 1um1_A KIAA1849 protein, RSGI 25.9 1.1E+02 0.0039 19.3 4.5 39 27-69 54-95 (110)
49 2qzb_A Uncharacterized protein 25.6 28 0.00097 26.1 1.6 33 7-39 42-74 (166)
50 2byg_A Channel associated prot 25.3 30 0.001 22.9 1.5 28 27-54 72-102 (117)
51 2dlu_A INAD-like protein; PDZ 25.1 1.1E+02 0.0037 19.4 4.2 26 28-53 57-85 (111)
52 2yt7_A Amyloid beta A4 precurs 24.9 33 0.0011 21.8 1.6 28 26-53 54-84 (101)
53 1hfo_A Migration inhibitory fa 24.5 40 0.0014 21.8 2.0 27 7-33 19-46 (113)
54 4e34_A Golgi-associated PDZ an 23.7 11 0.00038 23.1 -0.9 29 26-54 45-76 (87)
55 1j2q_H Proteasome beta subunit 23.7 1.4E+02 0.0046 21.2 5.0 42 45-86 155-199 (202)
56 2fne_A Multiple PDZ domain pro 23.7 41 0.0014 22.2 2.0 28 27-54 71-101 (117)
57 2db5_A INAD-like protein; PDZ 23.6 22 0.00075 23.6 0.6 27 27-53 72-102 (128)
58 2vh7_A Acylphosphatase-1; hydr 23.5 1.2E+02 0.0039 19.9 4.2 40 21-64 36-76 (99)
59 3lnn_A Membrane fusion protein 23.4 76 0.0026 24.2 3.7 15 26-40 77-91 (359)
60 2wkb_A Macrophage migration in 23.3 34 0.0012 22.9 1.6 69 8-76 21-113 (125)
61 1vfj_A Nitrogen regulatory pro 23.2 95 0.0032 20.6 3.8 38 32-69 58-96 (116)
62 2o2t_A Multiple PDZ domain pro 22.6 1.1E+02 0.0038 19.5 4.0 38 27-68 67-108 (117)
63 4dn9_A Antibiotic biosynthesis 22.4 1.8E+02 0.0061 19.4 5.3 35 33-67 26-60 (122)
64 2d90_A PDZ domain containing p 22.2 1.5E+02 0.0051 18.4 4.6 26 28-53 48-76 (102)
65 2iwo_A Multiple PDZ domain pro 22.1 38 0.0013 22.5 1.6 28 27-54 71-101 (120)
66 1wha_A KIAA0147 protein, scrib 22.1 1E+02 0.0035 19.4 3.7 27 28-54 57-86 (105)
67 4aff_A Nitrogen regulatory pro 22.0 1.1E+02 0.0037 20.8 4.0 37 32-68 58-95 (116)
68 2rcz_A Tight junction protein 21.7 1E+02 0.0036 17.9 3.4 26 28-53 40-68 (81)
69 3ncq_A Nitrogen regulatory pro 21.4 1E+02 0.0036 21.0 3.8 37 32-68 58-95 (119)
70 3egg_C Spinophilin; PP1, serin 21.2 44 0.0015 23.9 1.8 28 27-54 129-159 (170)
71 2he4_A Na(+)/H(+) exchange reg 21.0 1E+02 0.0034 18.7 3.3 10 29-38 47-56 (90)
72 1urr_A CG18505 protein; acylph 21.0 1.7E+02 0.0059 19.2 4.7 39 22-64 40-79 (102)
73 2dm8_A INAD-like protein; PDZ 20.9 87 0.003 20.0 3.1 28 27-54 61-91 (116)
74 4amh_A Disks large homolog 1; 20.7 1.1E+02 0.0038 19.5 3.6 39 27-69 50-91 (106)
75 3o46_A Maguk P55 subfamily mem 20.7 57 0.002 20.1 2.1 27 28-54 47-76 (93)
76 3cyy_A Tight junction protein 20.7 1.1E+02 0.0037 18.5 3.4 26 28-53 42-70 (92)
77 1uew_A Membrane associated gua 20.2 96 0.0033 19.9 3.3 28 26-53 60-90 (114)
78 2fe5_A Presynaptic protein SAP 20.0 50 0.0017 20.2 1.7 13 28-40 52-64 (94)
No 1
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=100.00 E-value=5e-54 Score=339.13 Aligned_cols=110 Identities=57% Similarity=0.978 Sum_probs=97.6
Q ss_pred CccccccchhccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEeCccccccccHHHH
Q 033447 1 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADY 80 (119)
Q Consensus 1 mls~AGADRlq~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis~kwGFT~~~~~e~ 80 (119)
|||||||||||+|||++||+|+||||||++||+||||+++++|+++|+|||++|++|||++|+|+++++||||+|++|||
T Consensus 102 mls~agAdRl~tgM~~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KlP~~tkiv~~~kwgft~~~~~~~ 181 (215)
T 4a17_H 102 MLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQKWGFTKLTRAQY 181 (215)
T ss_dssp -----------CTTSCCCCEEEEEEEEECTTCEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESBCTTSSSBHHHH
T ss_pred cccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhhhCCCceEEEEccccCCCccCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCeEecCcceEEEeCCCCCCCCCCC
Q 033447 81 LRWKSENRIVPDGVNAKLLGCHGPLAQRQP 110 (119)
Q Consensus 81 ~~~~~~~~l~~dG~~vk~~~~~Gpl~~~~~ 110 (119)
++|++||+|++|||+|||+++||||++|..
T Consensus 182 ~~~~~~~~l~~dg~~~k~~~~~gpl~~~~~ 211 (215)
T 4a17_H 182 SRLRNQKKLVTDGSNVKVIGERGPLSRLEL 211 (215)
T ss_dssp HHHHHTTCEEEETTEEEECCTTSCTTTSGG
T ss_pred HHHHHCCeEecCCccEEEccCCCCHHHHhh
Confidence 999999999999999999999999999953
No 2
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=100.00 E-value=9.9e-54 Score=338.22 Aligned_cols=110 Identities=55% Similarity=0.949 Sum_probs=97.6
Q ss_pred CccccccchhccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEeCccccccccHHHH
Q 033447 1 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADY 80 (119)
Q Consensus 1 mls~AGADRlq~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis~kwGFT~~~~~e~ 80 (119)
|||||||||||+|||++||+|+||||||++|||||||+++++|+++|+|||++|++|||++|+|+++++||||+|++|||
T Consensus 100 mls~AgAdRl~tgMr~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KLP~~tkiv~~~kwgft~~~~~~~ 179 (219)
T 3j0l_J 100 MLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEY 179 (219)
T ss_dssp -----------CCSSCCCCEEEEECEEECTTCEESCCCCCGGGHHHHHHHHHHHHHSSSCCCCCEECCCSSSSSCSCHHH
T ss_pred cccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCCeEEEEecccCccccCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCeEecCcceEEEeCCCCCCCCCCC
Q 033447 81 LRWKSENRIVPDGVNAKLLGCHGPLAQRQP 110 (119)
Q Consensus 81 ~~~~~~~~l~~dG~~vk~~~~~Gpl~~~~~ 110 (119)
++|++||+|++|||+|||+++||||++|..
T Consensus 180 ~~~~~~~~l~~dg~~~k~~~~~gpl~~~~~ 209 (219)
T 3j0l_J 180 LKKREAGEVKDDGAFVKFLSKKGSLENNIR 209 (219)
T ss_dssp HTTTTSCCSCCCSSSCCCSCCSSSCHHHHH
T ss_pred HHHHHCCeEecCCccEEEccCCCCHHHHHH
Confidence 999999999999999999999999999963
No 3
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_I 1s1i_I 3jyw_I
Probab=100.00 E-value=7.7e-55 Score=345.41 Aligned_cols=117 Identities=79% Similarity=1.307 Sum_probs=114.4
Q ss_pred CccccccchhccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEeCccccccccHHHH
Q 033447 1 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADY 80 (119)
Q Consensus 1 mls~AGADRlq~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis~kwGFT~~~~~e~ 80 (119)
|||||||||||+|||++||||+||||||++||+||||+++++|+++|+|||++|++|||++|+|+++++||||+|++|||
T Consensus 102 mls~AgAdRl~tGMr~~kGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALrrA~~KLP~ktkiv~~~kwgft~~~~~~~ 181 (224)
T 3iz5_I 102 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEY 181 (224)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCSCEEEECCCCCSEECCCCCCCCSSCSSSSSSCCCSCCCCCEEEEECCTTTEEEEEEECC
T ss_pred cccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCceEEEEecccCccccCHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCeEecCcceEEEeCCCCCCCCCCCCcccccC
Q 033447 81 LRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 117 (119)
Q Consensus 81 ~~~~~~~~l~~dG~~vk~~~~~Gpl~~~~~~~~~~~~ 117 (119)
++|++||+|++|||+|||+++||||++|.+.++|..+
T Consensus 182 ~~~~~~~~l~~dg~~vk~~~~~gpl~~~~~~~~~~~~ 218 (224)
T 3iz5_I 182 VKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAE 218 (224)
T ss_dssp SSSCSHHHHHHHHHHHTSSSCEECCCCCSSTTHHHHH
T ss_pred HHHHHcCcEecCCcceEEcCCCCChHHcCcccccccc
Confidence 9999999999999999999999999999999888754
No 4
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.2e-49 Score=312.58 Aligned_cols=111 Identities=61% Similarity=1.012 Sum_probs=67.3
Q ss_pred CccccccchhccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEeCccccccccHHHH
Q 033447 1 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADY 80 (119)
Q Consensus 1 mls~AGADRlq~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis~kwGFT~~~~~e~ 80 (119)
|||||||||||+|||++||+|+||||||++||+||||++++.++++|+|||++|++|||++|+|+++++||||+|++|||
T Consensus 102 mls~kgAdRlqtgMg~gkGkp~~wvArVkpGqilfEi~~~~v~~~~A~eALr~A~~KLP~ktkiv~~~~~gft~~~~~~~ 181 (214)
T 2zkr_h 102 MLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEF 181 (214)
T ss_dssp TTCCSSCSSTTSSSTTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEECC------------
T ss_pred ccccCCchhhcccccCCCCCCcEEEEEECCCCEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCccccCHHHH
Confidence 89999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HhhhhcCeEecCcceEEEeCCCCCCCCCCCC
Q 033447 81 LRWKSENRIVPDGVNAKLLGCHGPLAQRQPG 111 (119)
Q Consensus 81 ~~~~~~~~l~~dG~~vk~~~~~Gpl~~~~~~ 111 (119)
++|+++|+|++|||+|||+++||||++|...
T Consensus 182 ~~~~~~~~~~~dg~~~~~~~~~g~l~~~~~~ 212 (214)
T 2zkr_h 182 ENMVAEKRLIPDGCGVKYIPNRGPLDKWRAL 212 (214)
T ss_dssp -------------------------------
T ss_pred HHHHHCCeEecCCceEEEECCCCChHHhhhc
Confidence 9999999999999999999999999999753
No 5
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=100.00 E-value=1.4e-38 Score=240.05 Aligned_cols=81 Identities=74% Similarity=1.182 Sum_probs=52.5
Q ss_pred CccccccchhccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEeCccccccccHHHH
Q 033447 1 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADY 80 (119)
Q Consensus 1 mls~AGADRlq~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis~kwGFT~~~~~e~ 80 (119)
|||||||||||+|||++||+|+||||||++||+||||++++.++++|+||||+|++|||++|+|+++++||||+|+++||
T Consensus 71 mlT~kgadRlq~gMg~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~~~gft~~~~~~~ 150 (151)
T 2pa2_A 71 MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEF 150 (151)
T ss_dssp ----------------------CCEEEECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESCCCCCBC-----
T ss_pred cccccchhhhhcccccCCCCccEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCCCCCChhhC
Confidence 78999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred H
Q 033447 81 L 81 (119)
Q Consensus 81 ~ 81 (119)
+
T Consensus 151 ~ 151 (151)
T 2pa2_A 151 E 151 (151)
T ss_dssp -
T ss_pred C
Confidence 5
No 6
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=9.4e-32 Score=207.75 Aligned_cols=70 Identities=39% Similarity=0.531 Sum_probs=68.2
Q ss_pred CccccccchhccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCce--EEEEeCcc
Q 033447 1 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQ--KIIVSRKW 70 (119)
Q Consensus 1 mls~AGADRlq~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~q--kIvis~kw 70 (119)
|||||||||||+|||++||||+||||||++||+||||+++++|+++|+|||++|++|||++| +|++++..
T Consensus 99 mls~agAdRl~~gM~~~kGkp~gwvArVk~Gqilfei~~~~~~~~~A~eAlr~A~~KlP~~t~~kiv~~~~~ 170 (181)
T 3j21_N 99 MATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKCYYRIYDKEGN 170 (181)
T ss_dssp CCCCCTTCCSCCSSSSCSCCCCCCEEEECSSEEEEEEEECSTTHHHHHHHHHHHHHSSSSCCSSCEEECCCC
T ss_pred cccccchhhhccccccccCCcceEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhccCCCCeeeEEEEeccH
Confidence 89999999999999999999999999999999999999999999999999999999999999 99999764
No 7
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=99.96 E-value=5.6e-30 Score=196.38 Aligned_cols=69 Identities=42% Similarity=0.587 Sum_probs=56.5
Q ss_pred CccccccchhccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEeCc
Q 033447 1 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 69 (119)
Q Consensus 1 mls~AGADRlq~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis~k 69 (119)
|||||||||||+|||++||+|+||||||++||+||||++++.++++|+|||++|++|||++|+|+++++
T Consensus 100 m~T~kgAdRlq~rMg~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~~KLP~ktkiv~~~~ 168 (171)
T 1vq8_H 100 QATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPA 168 (171)
T ss_dssp -----------CCSTTCCCEEEEEEEEECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECSC
T ss_pred cccccchhhhhccccccCCCCcEEEEEECCCCEEEEEECcCCCHHHHHHHHHHHHhhCCCcEEEEEecC
Confidence 899999999999999999999999999999999999999989999999999999999999999998865
No 8
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=99.85 E-value=1.2e-21 Score=148.36 Aligned_cols=57 Identities=30% Similarity=0.271 Sum_probs=54.2
Q ss_pred ccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEeCc
Q 033447 11 QTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 69 (119)
Q Consensus 11 q~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis~k 69 (119)
|+|||++||+|+||||||++||+||||++++ +++|+|||++|++|||++|+|+++++
T Consensus 98 etrMg~gkG~p~~wvArVk~G~ilfei~gv~--~~~A~eAlr~A~~KlP~ktkiv~~~~ 154 (157)
T 1ffk_F 98 GDGMRAPFGKSVGTAARSHGANHDFIAWVNP--DPAVEFAWRRAYMKVTPTVNIDSSPA 154 (157)
T ss_pred cccccCCCCCccEEEEEEcCCCEEEEEeccC--HHHHHHHHHHHHhhCCCcEEEEEecC
Confidence 8999999999999999999999999999985 56999999999999999999999875
No 9
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=99.78 E-value=1.6e-19 Score=133.71 Aligned_cols=57 Identities=23% Similarity=0.240 Sum_probs=54.3
Q ss_pred hccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEeC
Q 033447 10 LQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 68 (119)
Q Consensus 10 lq~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis~ 68 (119)
++|+|+++||+|++|||||++||+||||.+. ++++|+|||++|++|||++|+|++.+
T Consensus 78 ~etRMGkGKG~~~~wva~Vk~G~ilfEi~g~--~~~~A~eAlr~a~~KLP~~~kiv~~~ 134 (136)
T 3r8s_M 78 LAVRMGKGKGNVEYWVALIQPGKVLYEMDGV--PEELAREAFKLAAAKLPIKTTFVTKT 134 (136)
T ss_dssp SSCCSCSSCCEEEEEEEEECTTCEEEEEESS--CHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred hhccCCCCCCCCCEEEEEECCCCEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 6899999999999999999999999999996 89999999999999999999998764
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=99.73 E-value=2.3e-18 Score=124.62 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=53.4
Q ss_pred ccccccchhccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceE
Q 033447 2 LSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQK 63 (119)
Q Consensus 2 ls~AGADRlq~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qk 63 (119)
++|.+ +++.|...+|+|++|||||++||+||||.++ .++++|+|||++|++|||++++
T Consensus 61 vt~k~---~e~RMG~GKG~~~~wva~Vk~G~ilfEi~g~-~~~~~a~eAlr~a~~KlP~~~~ 118 (118)
T 2ftc_I 61 ITRKS---VGHRMGGGKGAIDHYVTPVKAGRLVVEMGGR-CEFEEVQGFLDQVAHKLPFAAK 118 (118)
T ss_pred cCcCc---hhcccccCCCCccEEEEEECCCCEEEEEecc-CCHHHHHHHHHHHHhhCCCCCC
Confidence 46666 6799999999999999999999999999994 7999999999999999999874
No 11
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=99.72 E-value=1.4e-18 Score=128.35 Aligned_cols=61 Identities=26% Similarity=0.307 Sum_probs=56.4
Q ss_pred ccccccchhccccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEe
Q 033447 2 LSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVS 67 (119)
Q Consensus 2 ls~AGADRlq~GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis 67 (119)
++|.+ +++.|...+|+|++|||||++||+||||.+. ++++|+|||++|++|||++|+|+++
T Consensus 74 vt~k~---~e~RMG~GKG~~~~wva~Vk~G~ilfEi~gv--~~~~A~eAlr~a~~KLP~~~kiv~~ 134 (135)
T 3bbo_O 74 VTVRP---AETRMGSGKGSPEYWVAVVKPGRILYEISGV--AENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp CCCCC---SSCCSSCCCSCSSCCCCCCCTTCEEEEECSS--CTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred cEecc---ccccccccCCCceEEEEEECCCCEEEEEecC--CHHHHHHHHHHHHhhCCCcEEEEec
Confidence 46667 7899999999999999999999999999994 8899999999999999999999864
No 12
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=99.57 E-value=2e-16 Score=117.73 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=49.4
Q ss_pred ccCCCCCCceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEeCc
Q 033447 13 GMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 69 (119)
Q Consensus 13 GMr~afGKP~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis~k 69 (119)
=|-..+|+|++|||||++||+||||++. ++++|+|||++|++|||++|+|++++.
T Consensus 83 RMG~GKG~~~~wva~Vk~G~ilfEi~gv--~~~~A~eAlr~A~~KLP~~~kiv~~~~ 137 (142)
T 2zjr_J 83 RMGKGKGAVEYWVSVVKPGRVMFEVAGV--TEEQAKEAFRLAGHKLPIQTKMVKREV 137 (142)
T ss_dssp CCSSSCCTTSEEBCCBCTTEEEECCCSS--CSTTTTTHHHHHHHTCSSCEEEECSCC
T ss_pred cccccCCCCCEEEEEECCCCEEEEEeCC--CHHHHHHHHHHHHhhCCCcEEEEEecc
Confidence 4555559999999999999999999994 889999999999999999999998763
No 13
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.80 E-value=18 Score=30.52 Aligned_cols=29 Identities=31% Similarity=0.310 Sum_probs=25.8
Q ss_pred EEeeCCCEEEEEEecCCCHHHHHHHHHhc
Q 033447 26 ARVAIGQVLLSVRCKDSNSHHAQEALRRA 54 (119)
Q Consensus 26 ARV~~GqvI~sir~~~~~~~~a~EALrrA 54 (119)
-+|+.|++|+.|....+..+.|.+.++.|
T Consensus 378 ~~v~~g~~l~~i~~~~~~~~~a~~~~~~~ 406 (423)
T 2dsj_A 378 DRVERGEALALVYHRRRGLEEALGHLREA 406 (423)
T ss_dssp CEECTTSEEEEEEECSSSHHHHHHHHHHH
T ss_pred CEeCCCCeEEEEEeCCccHHHHHHHHHhC
Confidence 37899999999999877889999999887
No 14
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=46.87 E-value=18 Score=30.49 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=25.7
Q ss_pred EEeeCCCEEEEEEecCCCHHHHHHHHHhc
Q 033447 26 ARVAIGQVLLSVRCKDSNSHHAQEALRRA 54 (119)
Q Consensus 26 ARV~~GqvI~sir~~~~~~~~a~EALrrA 54 (119)
-+|+.|++|+.|..+.+..+.|.+.|+.|
T Consensus 386 ~~v~~g~~l~~i~~~~~~~~~a~~~~~~~ 414 (433)
T 1brw_A 386 DRVQKGEALATIHSNRPDVLDVKEKIEAA 414 (433)
T ss_dssp CEECTTCEEEEEEESSSCCHHHHHHHHTT
T ss_pred CEECCCCeEEEEEcCCccHHHHHHHHHhc
Confidence 37899999999999877889999999887
No 15
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=42.35 E-value=29 Score=23.10 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=31.0
Q ss_pred CEEEEEEecCCCHHHHHHHHHhcccc-CCCceEEEEeCc
Q 033447 32 QVLLSVRCKDSNSHHAQEALRRAKFK-FPGRQKIIVSRK 69 (119)
Q Consensus 32 qvI~sir~~~~~~~~a~EALrrAk~K-lPg~qkIvis~k 69 (119)
++.+++-+.++..+.+.+|++.+... -||.-+|+++.-
T Consensus 58 k~~ieivv~d~~v~~vv~~I~~~~~tg~~GdGkiFV~pV 96 (112)
T 2eg2_A 58 KVKIEVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPV 96 (112)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEEC
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEh
Confidence 45788888888899999999998764 678889988853
No 16
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=41.32 E-value=29 Score=23.39 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=32.3
Q ss_pred CEEEEEEecCCCHHHHHHHHHhcccc-CCCceEEEEeCc
Q 033447 32 QVLLSVRCKDSNSHHAQEALRRAKFK-FPGRQKIIVSRK 69 (119)
Q Consensus 32 qvI~sir~~~~~~~~a~EALrrAk~K-lPg~qkIvis~k 69 (119)
++.+++-+.++..+.+.+|++.+... -||.-+|+++.-
T Consensus 62 k~~ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pV 100 (116)
T 2ns1_B 62 KVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAEL 100 (116)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHCCSSTTCCEEEEEEE
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEh
Confidence 57888888888999999999998776 888889998853
No 17
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=40.79 E-value=24 Score=29.76 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=23.5
Q ss_pred EeeCCCEEEEEEecCCCHHHHHHHHHhc
Q 033447 27 RVAIGQVLLSVRCKDSNSHHAQEALRRA 54 (119)
Q Consensus 27 RV~~GqvI~sir~~~~~~~~a~EALrrA 54 (119)
+|+.|++|+.|...+...+.|.+.|+.|
T Consensus 390 ~V~~g~~l~~i~~~~~~~~~a~~~~~~a 417 (436)
T 3h5q_A 390 KVEEGESLLTIHSNRQDVDDVVKKLDSS 417 (436)
T ss_dssp EECTTSEEEEEEESSSCCHHHHHHHHHH
T ss_pred EeCCCCeEEEEeCChHhHHHHHHHHHhc
Confidence 7899999999995556678899988875
No 18
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=40.07 E-value=33 Score=23.23 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=31.1
Q ss_pred CEEEEEEecCCCHHHHHHHHHhcccc-CCCceEEEEeCc
Q 033447 32 QVLLSVRCKDSNSHHAQEALRRAKFK-FPGRQKIIVSRK 69 (119)
Q Consensus 32 qvI~sir~~~~~~~~a~EALrrAk~K-lPg~qkIvis~k 69 (119)
+++++|-+.++..+.+.+|++.+... -||.-+|+++.-
T Consensus 60 K~~ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pV 98 (119)
T 2j9c_A 60 KVKIELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPV 98 (119)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHCCSSTTCEEEEEEEE
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEh
Confidence 56788888888899999999987754 688889988853
No 19
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=39.59 E-value=29 Score=22.45 Aligned_cols=41 Identities=32% Similarity=0.481 Sum_probs=25.0
Q ss_pred EeeCCCEEEEEEecC-CC--HHHHHHHHHhccccCCCceEEEEeC
Q 033447 27 RVAIGQVLLSVRCKD-SN--SHHAQEALRRAKFKFPGRQKIIVSR 68 (119)
Q Consensus 27 RV~~GqvI~sir~~~-~~--~~~a~EALrrAk~KlPg~qkIvis~ 68 (119)
++++|++|++|-+.+ .+ .+.+.+.|+.+..+ ++...+.+.+
T Consensus 51 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~-~~~v~l~v~R 94 (108)
T 3cbz_A 51 RIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK-PGPIVLTVAK 94 (108)
T ss_dssp CCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS-SSCEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC-CCeEEEEEEe
Confidence 478888888886553 22 56677777766321 2345555544
No 20
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=39.39 E-value=32 Score=23.00 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=31.2
Q ss_pred CEEEEEEecCCCHHHHHHHHHhcccc-CCCceEEEEeCc
Q 033447 32 QVLLSVRCKDSNSHHAQEALRRAKFK-FPGRQKIIVSRK 69 (119)
Q Consensus 32 qvI~sir~~~~~~~~a~EALrrAk~K-lPg~qkIvis~k 69 (119)
++++++-+.++..+.+.+|++.+... -||.-+|+++.-
T Consensus 60 K~~ieivv~d~~v~~vv~~I~~~~~tg~~GdGkiFV~pV 98 (114)
T 2gw8_A 60 KIKIELVLADDAVERAIDVIVEVARSGKIGDGKIFVLPV 98 (114)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHCCSSTTCCEEEEEEE
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhCCCCCCCEEEEEEEh
Confidence 37888888888899999999997754 688889988853
No 21
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=38.89 E-value=44 Score=23.92 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=28.0
Q ss_pred eeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhc
Q 033447 22 QGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA 54 (119)
Q Consensus 22 ~G~vARV~~GqvI~sir~~~~~~~~a~EALrrA 54 (119)
.+.+-+|.+|+.++-|-+-..|...|-+|++-.
T Consensus 85 ~HR~G~l~~ge~~v~Vav~s~HR~~Af~A~~~~ 117 (135)
T 4ap8_A 85 FHRLGLVPVSEASIIIAVSSAHRAASLEAVSYA 117 (135)
T ss_dssp EEECEEEETTSEEEEEEEEESSHHHHHHHHHHH
T ss_pred hhhcccccCCCeEEEEEEEccCHHHHHHHHHHH
Confidence 356778999999999999888999999888754
No 22
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=38.27 E-value=22 Score=23.21 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=17.7
Q ss_pred EeeCCCEEEEEEecCC-C--HHHHHHHHHhcc
Q 033447 27 RVAIGQVLLSVRCKDS-N--SHHAQEALRRAK 55 (119)
Q Consensus 27 RV~~GqvI~sir~~~~-~--~~~a~EALrrAk 55 (119)
++++|+.|++|-+.+- + .+.+.+.|+.+.
T Consensus 59 ~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~ 90 (109)
T 1wi4_A 59 RLKPGDQLVSINKESMIGVSFEEAKSIITRAK 90 (109)
T ss_dssp SCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHccc
Confidence 4677777777765532 1 456666666655
No 23
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=38.06 E-value=55 Score=23.70 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=32.2
Q ss_pred eeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhc----cccCCC
Q 033447 22 QGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA----KFKFPG 60 (119)
Q Consensus 22 ~G~vARV~~GqvI~sir~~~~~~~~a~EALrrA----k~KlPg 60 (119)
.+.+-++.+|+.++-|-+-..|...|-+|++-. |...|.
T Consensus 79 ~HR~G~l~~Ge~~v~VaVss~HR~~Af~A~~~~id~lK~~~Pi 121 (148)
T 3rpf_A 79 AHSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPI 121 (148)
T ss_dssp EEEEEEEETTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEcccCCCCEEEEEEEEcccHHHHHHHHHHHHHHHHhcCCE
Confidence 567788999999999999888999999887654 666666
No 24
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=37.18 E-value=46 Score=23.99 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=32.2
Q ss_pred eeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhc----cccCCC
Q 033447 22 QGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA----KFKFPG 60 (119)
Q Consensus 22 ~G~vARV~~GqvI~sir~~~~~~~~a~EALrrA----k~KlPg 60 (119)
.+.+-++.+|+.++-|-+-..|...|-+|++-+ |...|.
T Consensus 88 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPi 130 (147)
T 2wp4_A 88 AHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPI 130 (147)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCCE
Confidence 466778999999999998888999999988755 666676
No 25
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=36.74 E-value=47 Score=23.99 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=32.0
Q ss_pred eeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhc----cccCCC
Q 033447 22 QGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA----KFKFPG 60 (119)
Q Consensus 22 ~G~vARV~~GqvI~sir~~~~~~~~a~EALrrA----k~KlPg 60 (119)
...+-++.+|+.++-|-+-..|...|-+|++-+ |...|.
T Consensus 80 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPi 122 (149)
T 2q5w_E 80 VHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPI 122 (149)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEEcccCCCCeEEEEEEEcccHHHHHHHHHHHHHHHHhhCCE
Confidence 466778999999999998888999999988755 566665
No 26
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=36.60 E-value=47 Score=23.96 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=31.7
Q ss_pred eeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhc----cccCCC
Q 033447 22 QGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA----KFKFPG 60 (119)
Q Consensus 22 ~G~vARV~~GqvI~sir~~~~~~~~a~EALrrA----k~KlPg 60 (119)
.+.+-++.+|+.++-|-+-..|...|-+|++-+ |...|.
T Consensus 82 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPi 124 (150)
T 1fm0_E 82 IHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPF 124 (150)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEcccCCCCEEEEEEEEcCcHHHHHHHHHHHHHHHHhcCCE
Confidence 456678999999999998888999999988755 566665
No 27
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=34.96 E-value=47 Score=20.78 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=15.9
Q ss_pred eeCCCEEEEEEecC-CC--HHHHHHHHHhc
Q 033447 28 VAIGQVLLSVRCKD-SN--SHHAQEALRRA 54 (119)
Q Consensus 28 V~~GqvI~sir~~~-~~--~~~a~EALrrA 54 (119)
+++|++|++|-+.+ .+ .+.+.++|+.+
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 87 (103)
T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKA 87 (103)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 67777777776543 22 45555566543
No 28
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=34.87 E-value=35 Score=29.13 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=24.5
Q ss_pred EEeeCCCEEEEEEecCC-CHHHHHHHHHhc
Q 033447 26 ARVAIGQVLLSVRCKDS-NSHHAQEALRRA 54 (119)
Q Consensus 26 ARV~~GqvI~sir~~~~-~~~~a~EALrrA 54 (119)
-+|+.|++|+.|..+.+ ..+.|.+.|+.|
T Consensus 421 ~~V~~g~~l~~i~~~~~~~~~~a~~~~~~~ 450 (474)
T 1uou_A 421 QRLRRGTPWLRVHRDGPALSGPQSRALQEA 450 (474)
T ss_dssp CEECTTCEEEEEEESSSSCCHHHHHHHHHH
T ss_pred CEECCCCeEEEEEcCChhhHHHHHHHHHhc
Confidence 37899999999999865 478899988877
No 29
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=34.32 E-value=71 Score=21.18 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=31.2
Q ss_pred ecCCCHHHHHHHHHhccccCCCceEEEEeCccccccccHHHHHhhhhc
Q 033447 39 CKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSE 86 (119)
Q Consensus 39 ~~~~~~~~a~EALrrAk~KlPg~qkIvis~kwGFT~~~~~e~~~~~~~ 86 (119)
+.+|+.+.=+++|+..+.. +|+....-|.+..+|.+|.+|.+.
T Consensus 10 t~~Qsl~~Q~~~l~~~~~~-----~i~~d~~Sg~~~~~Rp~l~~ll~~ 52 (124)
T 3pkz_A 10 SLDQNLERQLENLKTFGAE-----KIFTEKQSGKSIENRPILQKALNF 52 (124)
T ss_dssp STTSCHHHHHHHHHHTTCS-----EEEEEESCSSCSTTCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhCCc-----eEEEEcccCCChhcCHHHHHHHHH
Confidence 4456777778888887643 677666557655889999999875
No 30
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=33.02 E-value=9.5 Score=23.99 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=18.8
Q ss_pred EeeCCCEEEEEEecC---CCHHHHHHHHHhc
Q 033447 27 RVAIGQVLLSVRCKD---SNSHHAQEALRRA 54 (119)
Q Consensus 27 RV~~GqvI~sir~~~---~~~~~a~EALrrA 54 (119)
++++|++|++|-+.+ ...+.+.+.|+.+
T Consensus 39 ~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~ 69 (88)
T 3e17_A 39 NLHEGDIILKINGTVTENMSLTDARKLIEKS 69 (88)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 577888888886553 3456666777754
No 31
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=32.54 E-value=70 Score=21.17 Aligned_cols=38 Identities=26% Similarity=0.214 Sum_probs=30.3
Q ss_pred CEEEEEEecCCCHHHHHHHHHhccc-cCCCceEEEEeCc
Q 033447 32 QVLLSVRCKDSNSHHAQEALRRAKF-KFPGRQKIIVSRK 69 (119)
Q Consensus 32 qvI~sir~~~~~~~~a~EALrrAk~-KlPg~qkIvis~k 69 (119)
++.+++-+.++..+.+.+|++.+.. --||.-+|+++.-
T Consensus 60 k~~ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pV 98 (114)
T 3bzq_A 60 KVRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPV 98 (114)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHCCSSTTCCEEEEEEE
T ss_pred EEEEEEEECHHHHHHHHHHHHHHhcCCCCCCEEEEEEEh
Confidence 4578888888899999999988754 4677789988853
No 32
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=32.46 E-value=49 Score=23.21 Aligned_cols=36 Identities=6% Similarity=-0.125 Sum_probs=29.4
Q ss_pred CCEEEEEEecCCCHHHHHHHHHhccccCCCceEEEEeC
Q 033447 31 GQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 68 (119)
Q Consensus 31 GqvI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis~ 68 (119)
-++.++|-+.++..+.+.+|++.+...- ..||.++.
T Consensus 77 pKvkiEivv~d~~ve~vv~aI~~~a~tg--~IKIfV~p 112 (120)
T 3ce8_A 77 EFCKFEIMHPAAQQAALLTALALVCKHN--PCRYWIMP 112 (120)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHTTTS--CCEEEEEE
T ss_pred ceEEEEEEECHHHHHHHHHHHHHHcCCC--CEEEEEEE
Confidence 5678999999999999999999997543 33888774
No 33
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=32.05 E-value=45 Score=20.26 Aligned_cols=27 Identities=15% Similarity=0.420 Sum_probs=16.0
Q ss_pred eeCCCEEEEEEecCC-C--HHHHHHHHHhc
Q 033447 28 VAIGQVLLSVRCKDS-N--SHHAQEALRRA 54 (119)
Q Consensus 28 V~~GqvI~sir~~~~-~--~~~a~EALrrA 54 (119)
+++|++|++|-+.+- + .+.+.+.|+.+
T Consensus 44 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 73 (87)
T 2pa1_A 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQS 73 (87)
T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHHHHTC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 567777777765432 2 35566666554
No 34
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=31.65 E-value=44 Score=24.26 Aligned_cols=39 Identities=23% Similarity=0.183 Sum_probs=32.1
Q ss_pred eeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhc----cccCCC
Q 033447 22 QGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA----KFKFPG 60 (119)
Q Consensus 22 ~G~vARV~~GqvI~sir~~~~~~~~a~EALrrA----k~KlPg 60 (119)
.+.+-++.+|+.++-|-+-..|...|-+|++-+ |...|.
T Consensus 86 ~HR~G~l~vGe~iv~VaVss~HR~~Af~A~~~~iD~lK~~aPi 128 (154)
T 2omd_A 86 HHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPI 128 (154)
T ss_dssp EEECEEEETTSCCEEEEEEESSHHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCCE
Confidence 466778999999999988888999999988755 666675
No 35
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=31.63 E-value=56 Score=20.06 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=23.4
Q ss_pred eeCCCEEEEEEecCC---CHHHHHHHHHhccccCCCceEEEEeC
Q 033447 28 VAIGQVLLSVRCKDS---NSHHAQEALRRAKFKFPGRQKIIVSR 68 (119)
Q Consensus 28 V~~GqvI~sir~~~~---~~~~a~EALrrAk~KlPg~qkIvis~ 68 (119)
+++|++|++|-+.+- +.+.+.++|+.+ .....+.+.+
T Consensus 45 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r 84 (91)
T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS----GKNVTLLVCG 84 (91)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTS----CSEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEe
Confidence 688999999977643 456666666654 3344554443
No 36
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=31.23 E-value=49 Score=22.08 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=16.3
Q ss_pred eeCCCEEEEEEecCC-C--HHHHHHHHHhc
Q 033447 28 VAIGQVLLSVRCKDS-N--SHHAQEALRRA 54 (119)
Q Consensus 28 V~~GqvI~sir~~~~-~--~~~a~EALrrA 54 (119)
+++|++|++|-+.+- + .+.+.++|+.+
T Consensus 78 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 107 (123)
T 2iwq_A 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKA 107 (123)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 677777777765532 2 45566666554
No 37
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=30.47 E-value=61 Score=20.14 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=15.2
Q ss_pred eeCCCEEEEEEecCC-C--HHHHHHHHHhc
Q 033447 28 VAIGQVLLSVRCKDS-N--SHHAQEALRRA 54 (119)
Q Consensus 28 V~~GqvI~sir~~~~-~--~~~a~EALrrA 54 (119)
+++|++|.+|-+.+- + .+.+.++|+.+
T Consensus 55 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 84 (96)
T 2ego_A 55 LTPGDTIASVNGLNVEGIRHREIVDIIKAS 84 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 566777777765432 2 25555555554
No 38
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=30.26 E-value=65 Score=20.30 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=15.8
Q ss_pred eeCCCEEEEEEecCC---CHHHHHHHHHhcc
Q 033447 28 VAIGQVLLSVRCKDS---NSHHAQEALRRAK 55 (119)
Q Consensus 28 V~~GqvI~sir~~~~---~~~~a~EALrrAk 55 (119)
+++|++|++|-+.+- ..+.+.+.++.+.
T Consensus 63 L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~ 93 (107)
T 3nfk_A 63 LNEGDQVVLINGRDIAEHTHDQVVLFIKASC 93 (107)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHCGG
T ss_pred cCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence 677777777755421 2345555555543
No 39
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=29.49 E-value=88 Score=20.94 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=30.7
Q ss_pred CEEEEEEecCCCHHHHHHHHHhcccc-CCCceEEEEeC
Q 033447 32 QVLLSVRCKDSNSHHAQEALRRAKFK-FPGRQKIIVSR 68 (119)
Q Consensus 32 qvI~sir~~~~~~~~a~EALrrAk~K-lPg~qkIvis~ 68 (119)
++.+++-+.++..+.+.+|++.+..- =||.=||+++.
T Consensus 58 K~kieivV~d~~v~~vv~~I~~~~~tg~~GdGkIfV~~ 95 (112)
T 3mhy_A 58 KVKVEVAVSDDQYEQVVEAIQKAANTGRIGDGKIFVLD 95 (112)
T ss_dssp EEEEEEEECTTTHHHHHHHHHHHHCCSSTTCCEEEEEE
T ss_pred eEEEEEEEchHHHHHHHHHHHHHhcCCCCCCeEEEEEE
Confidence 47889999999999999999987653 57778998875
No 40
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=29.15 E-value=53 Score=21.28 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=27.5
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHhccccCCCceEEEEeCc
Q 033447 27 RVAIGQVLLSVRCKDS---NSHHAQEALRRAKFKFPGRQKIIVSRK 69 (119)
Q Consensus 27 RV~~GqvI~sir~~~~---~~~~a~EALrrAk~KlPg~qkIvis~k 69 (119)
.+++|++|++|-+.+- ..+.+.+.++.+.-.......+.+.+.
T Consensus 60 GL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~ 105 (119)
T 2cs5_A 60 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 105 (119)
T ss_dssp CCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcc
Confidence 6889999999977642 246677777776543333455555543
No 41
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=28.69 E-value=64 Score=19.97 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=16.3
Q ss_pred eeCCCEEEEEEecCC-CH--HHHHHHHHhc
Q 033447 28 VAIGQVLLSVRCKDS-NS--HHAQEALRRA 54 (119)
Q Consensus 28 V~~GqvI~sir~~~~-~~--~~a~EALrrA 54 (119)
+++|++|++|-+.+- +. +.+.++|+.+
T Consensus 48 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 77 (94)
T 1vb7_A 48 LRPGDIIVAINGQSAENMLHAEAQSKIRQS 77 (94)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 677888888866532 21 5555555543
No 42
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=28.69 E-value=22 Score=29.92 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=23.2
Q ss_pred EeeCCCEEEEEEecCC-CHHHHHHHHHhc
Q 033447 27 RVAIGQVLLSVRCKDS-NSHHAQEALRRA 54 (119)
Q Consensus 27 RV~~GqvI~sir~~~~-~~~~a~EALrrA 54 (119)
+|+.|++|+.|....+ ..+.|.+.++.|
T Consensus 392 ~v~~g~~l~~i~~~~~~~~~~a~~~~~~~ 420 (440)
T 2tpt_A 392 QVDGQRPLAVIHAKDENNWQEAAKAVKAA 420 (440)
T ss_dssp EEBTTBCSEEEEESSHHHHHHHHHHHHHH
T ss_pred EECCCCeEEEEecCCHhhHHHHHHHHHhc
Confidence 7899999999999754 467788888776
No 43
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=28.12 E-value=60 Score=22.80 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=31.5
Q ss_pred CCEEEEEEecCCCHHHHHHHHHhcccc-CCCceEEEEeC
Q 033447 31 GQVLLSVRCKDSNSHHAQEALRRAKFK-FPGRQKIIVSR 68 (119)
Q Consensus 31 GqvI~sir~~~~~~~~a~EALrrAk~K-lPg~qkIvis~ 68 (119)
-++.++|-+.++..+.+.++++.+... -||.-+|+++.
T Consensus 70 pK~~ieivV~de~ve~Vv~~I~~~~~tg~~GdGkIFV~p 108 (135)
T 2o66_A 70 AKVKMEIVVKKDQVESVINTIIEGARTGEIGDGKIFVLP 108 (135)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHCCSSTTCCEEEEEE
T ss_pred ceEEEEEEEcHHHHHHHHHHHHHHhCCCCCCCEEEEEEE
Confidence 456788888888899999999988776 68888998885
No 44
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=27.70 E-value=44 Score=22.45 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=23.0
Q ss_pred eCCCEEEEEEecCCCHHHHHHHHHhccccCCC
Q 033447 29 AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60 (119)
Q Consensus 29 ~~GqvI~sir~~~~~~~~a~EALrrAk~KlPg 60 (119)
..++..+.++.. +.+.|.++|+.++|+++.
T Consensus 108 ~~~~~~~~i~~~--d~~~A~~~L~~~g~~v~~ 137 (144)
T 2f06_A 108 NNNVANVVIRPS--NMDKCIEVLKEKKVDLLA 137 (144)
T ss_dssp ETTEEEEEEEES--CHHHHHHHHHHTTCEEEC
T ss_pred cCCcEEEEEEeC--CHHHHHHHHHHcCCEEec
Confidence 455666667664 889999999999988754
No 45
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=27.58 E-value=71 Score=21.07 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=30.6
Q ss_pred CEEEEEEecCCCHHHHHHHHHhccc-cCCCceEEEEeCc
Q 033447 32 QVLLSVRCKDSNSHHAQEALRRAKF-KFPGRQKIIVSRK 69 (119)
Q Consensus 32 qvI~sir~~~~~~~~a~EALrrAk~-KlPg~qkIvis~k 69 (119)
++.+++-+.++..+.+.+|++.+.. --||.-+|+++.-
T Consensus 58 k~~ieivv~d~~v~~vv~~I~~~~~tg~~GdGkiFV~~V 96 (112)
T 1hwu_A 58 KVKIEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEV 96 (112)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEEC
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEh
Confidence 4788888888889999999998654 4677789988753
No 46
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=26.56 E-value=86 Score=20.47 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=16.2
Q ss_pred eeCCCEEEEEEecC---CCHHHHHHHHHhc
Q 033447 28 VAIGQVLLSVRCKD---SNSHHAQEALRRA 54 (119)
Q Consensus 28 V~~GqvI~sir~~~---~~~~~a~EALrrA 54 (119)
+++|++|++|-+.+ .+.+.+.+.|+.+
T Consensus 69 L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~ 98 (114)
T 2gzv_A 69 VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 98 (114)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 67777777775543 2445555556543
No 47
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=26.36 E-value=75 Score=20.54 Aligned_cols=13 Identities=15% Similarity=0.468 Sum_probs=6.2
Q ss_pred eeCCCEEEEEEec
Q 033447 28 VAIGQVLLSVRCK 40 (119)
Q Consensus 28 V~~GqvI~sir~~ 40 (119)
+++|++|++|-+.
T Consensus 55 L~~GD~Il~ING~ 67 (97)
T 2ejy_A 55 LHVGDEILEINGT 67 (97)
T ss_dssp CCTTCEEEEETTB
T ss_pred CCCCCEEEEECCE
Confidence 4445555555443
No 48
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=25.87 E-value=1.1e+02 Score=19.28 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=23.3
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHhccccCCCceEEEEeCc
Q 033447 27 RVAIGQVLLSVRCKDS---NSHHAQEALRRAKFKFPGRQKIIVSRK 69 (119)
Q Consensus 27 RV~~GqvI~sir~~~~---~~~~a~EALrrAk~KlPg~qkIvis~k 69 (119)
++++|++|++|-+.+- ....+..+++.+ .....+.+.+.
T Consensus 54 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~R~ 95 (110)
T 1um1_A 54 RLSLGDRILEVNGSSLLGLGYLRAVDLIRHG----GKKMRFLVAKS 95 (110)
T ss_dssp CCCTTCEEEEESSCBCSSCCHHHHHHHHHTC----CSEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEeC
Confidence 3788999999877643 345555556543 23445555543
No 49
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Escherichia coli}
Probab=25.63 E-value=28 Score=26.14 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=30.5
Q ss_pred cchhccccCCCCCCceeeEEEeeCCCEEEEEEe
Q 033447 7 ADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRC 39 (119)
Q Consensus 7 ADRlq~GMr~afGKP~G~vARV~~GqvI~sir~ 39 (119)
--||.+||+-+=|+++-+..-++-+||.++|.+
T Consensus 42 ~y~lrsGm~t~~G~~v~~~qA~~~d~v~lvi~G 74 (166)
T 2qzb_A 42 DYRLRSGMKTANGNVVRFFEVMKGDNVAMVING 74 (166)
T ss_dssp SCEEEEEEEEETTEEEEEEEEEETTEEEEEEEC
T ss_pred CcEEeeceecCCCCEEEeeeeecCCcEEEEEEC
Confidence 347899999999999999999999999999998
No 50
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=25.31 E-value=30 Score=22.87 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=17.5
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHhc
Q 033447 27 RVAIGQVLLSVRCKDS---NSHHAQEALRRA 54 (119)
Q Consensus 27 RV~~GqvI~sir~~~~---~~~~a~EALrrA 54 (119)
++++|++|++|-+.+- ..+.+.+.|+.+
T Consensus 72 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 102 (117)
T 2byg_A 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKNT 102 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3778888888766532 345566666643
No 51
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=25.06 E-value=1.1e+02 Score=19.43 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=14.7
Q ss_pred eeCCCEEEEEEecCC---CHHHHHHHHHh
Q 033447 28 VAIGQVLLSVRCKDS---NSHHAQEALRR 53 (119)
Q Consensus 28 V~~GqvI~sir~~~~---~~~~a~EALrr 53 (119)
+++|++|++|-+.+- ..+.+.+.|+.
T Consensus 57 l~~GD~I~~vng~~v~~~~~~~~~~~l~~ 85 (111)
T 2dlu_A 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRN 85 (111)
T ss_dssp CCSSCEEEEESSCCCTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 667777777765532 23444555554
No 52
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=24.93 E-value=33 Score=21.82 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=16.9
Q ss_pred EEeeCCCEEEEEEecCC---CHHHHHHHHHh
Q 033447 26 ARVAIGQVLLSVRCKDS---NSHHAQEALRR 53 (119)
Q Consensus 26 ARV~~GqvI~sir~~~~---~~~~a~EALrr 53 (119)
+.+++|++|++|-+.+- +.+.+.+.|+.
T Consensus 54 ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 84 (101)
T 2yt7_A 54 GALSIGDRLTAINGTSLVGLPLAACQAAVRE 84 (101)
T ss_dssp SSCCTTCEEEEESSCBCTTSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 34667777777766542 44555556654
No 53
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=24.49 E-value=40 Score=21.82 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=18.1
Q ss_pred cchhccccCCCCCCceeeEE-EeeCCCE
Q 033447 7 ADRLQTGMRGAFGKPQGTCA-RVAIGQV 33 (119)
Q Consensus 7 ADRlq~GMr~afGKP~G~vA-RV~~Gqv 33 (119)
++.|+.-|...+|||+.+++ .+++++.
T Consensus 19 ~~~l~~~l~~~l~kPe~~~~v~~~~~~~ 46 (113)
T 1hfo_A 19 LSSTSALVGNILSKPGSYVAVHINTDQQ 46 (113)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEECSCE
T ss_pred HHHHHHHHHHHHCCChHHEEEEEeCCcc
Confidence 35677778888999987654 3455543
No 54
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=23.72 E-value=11 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.341 Sum_probs=17.6
Q ss_pred EEeeCCCEEEEEEecC---CCHHHHHHHHHhc
Q 033447 26 ARVAIGQVLLSVRCKD---SNSHHAQEALRRA 54 (119)
Q Consensus 26 ARV~~GqvI~sir~~~---~~~~~a~EALrrA 54 (119)
|.+++|++|++|-+.+ ...+.+.+.++.+
T Consensus 45 agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 76 (87)
T 4e34_A 45 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ 76 (87)
T ss_dssp SCCCTTEEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4567777888776543 2345566666643
No 55
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=23.70 E-value=1.4e+02 Score=21.19 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=26.8
Q ss_pred HHHHHHHHhcccc--C-CCceEEEEeCccccccccHHHHHhhhhc
Q 033447 45 HHAQEALRRAKFK--F-PGRQKIIVSRKWGFTKFSRADYLRWKSE 86 (119)
Q Consensus 45 ~~a~EALrrAk~K--l-Pg~qkIvis~kwGFT~~~~~e~~~~~~~ 86 (119)
+.|++||+-+..- + .....|.+-.+-||+.++.+|.+++.++
T Consensus 155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~ 199 (202)
T 1j2q_H 155 ELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199 (202)
T ss_dssp HHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHH
Confidence 4556666655332 2 3445564444459999999999888754
No 56
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=23.70 E-value=41 Score=22.24 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=18.7
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHhc
Q 033447 27 RVAIGQVLLSVRCKDS---NSHHAQEALRRA 54 (119)
Q Consensus 27 RV~~GqvI~sir~~~~---~~~~a~EALrrA 54 (119)
++++|++|++|-+.+- ..+.+.+.++.+
T Consensus 71 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 101 (117)
T 2fne_A 71 RLKRGDQIIAVNGQSLEGVTHEEAVAILKRT 101 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4788888888866532 356666667654
No 57
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=23.60 E-value=22 Score=23.60 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=17.5
Q ss_pred EeeCCCEEEEEEecCC----CHHHHHHHHHh
Q 033447 27 RVAIGQVLLSVRCKDS----NSHHAQEALRR 53 (119)
Q Consensus 27 RV~~GqvI~sir~~~~----~~~~a~EALrr 53 (119)
++++|++|++|-+.+- ..+.+.+.|+.
T Consensus 72 ~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~ 102 (128)
T 2db5_A 72 RLKENDQILAINHTPLDQNISHQQAIALLQQ 102 (128)
T ss_dssp CCCSSCBEEEESSCBCSTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHc
Confidence 4778888888876542 35556666655
No 58
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=23.46 E-value=1.2e+02 Score=19.93 Aligned_cols=40 Identities=13% Similarity=-0.026 Sum_probs=26.5
Q ss_pred ceeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccc-cCCCceEE
Q 033447 21 PQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKF-KFPGRQKI 64 (119)
Q Consensus 21 P~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~-KlPg~qkI 64 (119)
-.|||--..-|.|.+++.+.++ +.++|..+-. +-|..-+|
T Consensus 36 L~G~V~N~~dG~Vei~~eG~~~----~v~~f~~~l~~~~p~~a~V 76 (99)
T 2vh7_A 36 LVGWVQNTDRGTVQGQLQGPIS----KVRHMQEWLETRGSPKSHI 76 (99)
T ss_dssp CEEEEEECTTSCEEEEEEEEHH----HHHHHHHHHHHTCSTTCEE
T ss_pred CcEEEEECCCCCEEEEEEcCHH----HHHHHHHHHHhcCCCceEE
Confidence 3789999999999999998643 3444444432 45554444
No 59
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=23.39 E-value=76 Score=24.21 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=12.9
Q ss_pred EEeeCCCEEEEEEec
Q 033447 26 ARVAIGQVLLSVRCK 40 (119)
Q Consensus 26 ARV~~GqvI~sir~~ 40 (119)
.+|+.||+|+++...
T Consensus 77 ~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 77 DEVKAGDVLFTIDSA 91 (359)
T ss_dssp CEECTTCEEEEEECS
T ss_pred CEEcCCCEEEEEChH
Confidence 378999999999875
No 60
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=23.35 E-value=34 Score=22.88 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=37.9
Q ss_pred chhccccCCCCCCceeeEEE-eeCCC-----------EEEEEE-----ecCCCHHHHHH---HHHhccccCCCceEEEEe
Q 033447 8 DRLQTGMRGAFGKPQGTCAR-VAIGQ-----------VLLSVR-----CKDSNSHHAQE---ALRRAKFKFPGRQKIIVS 67 (119)
Q Consensus 8 DRlq~GMr~afGKP~G~vAR-V~~Gq-----------vI~sir-----~~~~~~~~a~E---ALrrAk~KlPg~qkIvis 67 (119)
+.|+.-|...+|||+.+++. +.+++ ++++|. +.+|+.+.+++ +|...--.-|-+..|++.
T Consensus 21 ~~l~~ala~~lgkPe~~~~V~~~~~~~~~~gg~~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~ 100 (125)
T 2wkb_A 21 SEIEDAISNILGKPVAYIMSNYDYQKNLRFSGSNEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEFR 100 (125)
T ss_dssp HHHHHHHHHHHCSCCTTCEEEEEECTTCEETTBCSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHhCCCHHHEEEEEEcCCceEeCCCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEE
Confidence 45667777788888776543 23333 344553 33344433332 444444455667777766
Q ss_pred C----cccccccc
Q 033447 68 R----KWGFTKFS 76 (119)
Q Consensus 68 ~----kwGFT~~~ 76 (119)
+ .|||-.-+
T Consensus 101 e~~~~~wg~~G~~ 113 (125)
T 2wkb_A 101 DCSAQNFAFSGSL 113 (125)
T ss_dssp C----CEEEEGGG
T ss_pred ECCHHHeEECCEE
Confidence 4 78875544
No 61
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=23.15 E-value=95 Score=20.60 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=29.2
Q ss_pred CEEEEEEecCCCHHHHHHHHHhcccc-CCCceEEEEeCc
Q 033447 32 QVLLSVRCKDSNSHHAQEALRRAKFK-FPGRQKIIVSRK 69 (119)
Q Consensus 32 qvI~sir~~~~~~~~a~EALrrAk~K-lPg~qkIvis~k 69 (119)
++.+++-+.++..+.+.+|++.+... =||.-+|+++.-
T Consensus 58 k~~ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pV 96 (116)
T 1vfj_A 58 KVRLEIGVSEPFVKPTVEAILKAARTGEVGDGKIFVLPV 96 (116)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEEC
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEh
Confidence 45677777788899999999987643 567778888753
No 62
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=22.55 E-value=1.1e+02 Score=19.55 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=23.4
Q ss_pred EeeCCCEEEEEEecCC----CHHHHHHHHHhccccCCCceEEEEeC
Q 033447 27 RVAIGQVLLSVRCKDS----NSHHAQEALRRAKFKFPGRQKIIVSR 68 (119)
Q Consensus 27 RV~~GqvI~sir~~~~----~~~~a~EALrrAk~KlPg~qkIvis~ 68 (119)
++++|++|++|-+.+- ..+.+.++|+.+ .....+.+.+
T Consensus 67 ~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~----~~~v~l~v~R 108 (117)
T 2o2t_A 67 RLKETDQILAINGQALDQTITHQQAISILQKA----KDTVQLVIAR 108 (117)
T ss_dssp CCCTTCEEEEETTEECCTTSCHHHHHHHHHHC----CSEEEEEEES
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHcC----CCEEEEEEEe
Confidence 4888999998876532 456666677653 2344455443
No 63
>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}
Probab=22.42 E-value=1.8e+02 Score=19.37 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=29.0
Q ss_pred EEEEEEecCCCHHHHHHHHHhccccCCCceEEEEe
Q 033447 33 VLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVS 67 (119)
Q Consensus 33 vI~sir~~~~~~~~a~EALrrAk~KlPg~qkIvis 67 (119)
+|..+..++.+.+...++|..+.-+-||.....+.
T Consensus 26 via~~~vkpg~~~ef~~~l~~~~r~EpGcl~y~l~ 60 (122)
T 4dn9_A 26 LIGKMRATPGQRDALIAILVEGASSMPGCLSYVVA 60 (122)
T ss_dssp EEEEEEESTTCHHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 56677888889999999999988899998766554
No 64
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.22 E-value=1.5e+02 Score=18.41 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=16.3
Q ss_pred eeCCCEEEEEEecCCC---HHHHHHHHHh
Q 033447 28 VAIGQVLLSVRCKDSN---SHHAQEALRR 53 (119)
Q Consensus 28 V~~GqvI~sir~~~~~---~~~a~EALrr 53 (119)
+++|++|++|-+.+-. .+.+.++|+.
T Consensus 48 l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 76 (102)
T 2d90_A 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRK 76 (102)
T ss_dssp CCTTCEEEEESSCBCTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 6778888888766422 2455555554
No 65
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=22.15 E-value=38 Score=22.47 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=17.5
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHhc
Q 033447 27 RVAIGQVLLSVRCKDS---NSHHAQEALRRA 54 (119)
Q Consensus 27 RV~~GqvI~sir~~~~---~~~~a~EALrrA 54 (119)
.+++|++|++|-+.+- ..+.+.+.++.+
T Consensus 71 gL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~ 101 (120)
T 2iwo_A 71 KLRVGDRIVTICGTSTEGMTHTQAVNLLKNA 101 (120)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 6677788877765532 245566666655
No 66
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.05 E-value=1e+02 Score=19.36 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=16.7
Q ss_pred eeCCCEEEEEEecCC-C--HHHHHHHHHhc
Q 033447 28 VAIGQVLLSVRCKDS-N--SHHAQEALRRA 54 (119)
Q Consensus 28 V~~GqvI~sir~~~~-~--~~~a~EALrrA 54 (119)
+++|++|++|-+.+- + .+.+..+|+.+
T Consensus 57 L~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 86 (105)
T 1wha_A 57 LQVGDRVLSINGVDVTEARHDHAVSLLTAA 86 (105)
T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 778888888876532 2 44555555543
No 67
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=22.02 E-value=1.1e+02 Score=20.77 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=30.8
Q ss_pred CEEEEEEecCCCHHHHHHHHHhcccc-CCCceEEEEeC
Q 033447 32 QVLLSVRCKDSNSHHAQEALRRAKFK-FPGRQKIIVSR 68 (119)
Q Consensus 32 qvI~sir~~~~~~~~a~EALrrAk~K-lPg~qkIvis~ 68 (119)
++.++|-+.++..+.+.++++.+... =||.=||+++.
T Consensus 58 K~kieivV~d~~ve~vv~~I~~~a~Tg~~GDGkIFV~~ 95 (116)
T 4aff_A 58 KLKLEIVVEDAQVDTVIDKIVAAARTGENGDGKIFVSP 95 (116)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCEEEEEEE
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCeEEEEEE
Confidence 48889999988999999999887654 57888998875
No 68
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=21.66 E-value=1e+02 Score=17.85 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=13.7
Q ss_pred eeCCCEEEEEEecCC---CHHHHHHHHHh
Q 033447 28 VAIGQVLLSVRCKDS---NSHHAQEALRR 53 (119)
Q Consensus 28 V~~GqvI~sir~~~~---~~~~a~EALrr 53 (119)
+++|++|++|-+.+- +.+.+.++|+.
T Consensus 40 l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 68 (81)
T 2rcz_A 40 IQEGDVVLKINGTVTENMSLTDAKTLIER 68 (81)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHC
Confidence 666777777655431 33444444443
No 69
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=21.38 E-value=1e+02 Score=21.05 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=30.8
Q ss_pred CEEEEEEecCCCHHHHHHHHHhcccc-CCCceEEEEeC
Q 033447 32 QVLLSVRCKDSNSHHAQEALRRAKFK-FPGRQKIIVSR 68 (119)
Q Consensus 32 qvI~sir~~~~~~~~a~EALrrAk~K-lPg~qkIvis~ 68 (119)
++.++|-+.++..+.+.++++.+... =||.=||+++.
T Consensus 58 K~kieivV~de~ve~vv~~I~~~a~TG~~GDGkIFV~~ 95 (119)
T 3ncq_A 58 KVKLEIVVKDDAVEEVIGLIVNSAFTGSPGDGKIFIIP 95 (119)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEE
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 58889989888999999999987553 67888998875
No 70
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=21.17 E-value=44 Score=23.94 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=18.7
Q ss_pred EeeCCCEEEEEEecC---CCHHHHHHHHHhc
Q 033447 27 RVAIGQVLLSVRCKD---SNSHHAQEALRRA 54 (119)
Q Consensus 27 RV~~GqvI~sir~~~---~~~~~a~EALrrA 54 (119)
++++|++|++|-+.. ...+.+.+.|+.+
T Consensus 129 ~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~ 159 (170)
T 3egg_C 129 RIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 159 (170)
T ss_dssp CCCTTCEEEEETTEECTTBCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 478888888886543 2346666777664
No 71
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=21.01 E-value=1e+02 Score=18.72 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=4.5
Q ss_pred eCCCEEEEEE
Q 033447 29 AIGQVLLSVR 38 (119)
Q Consensus 29 ~~GqvI~sir 38 (119)
++|++|++|-
T Consensus 47 ~~GD~I~~in 56 (90)
T 2he4_A 47 RAQDRLIEVN 56 (90)
T ss_dssp CTTCEEEEET
T ss_pred CCCCEEEEEC
Confidence 4444444443
No 72
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=20.96 E-value=1.7e+02 Score=19.18 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=26.9
Q ss_pred eeeEEEeeCCCEEEEEEecCCCHHHHHHHHHhccc-cCCCceEE
Q 033447 22 QGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKF-KFPGRQKI 64 (119)
Q Consensus 22 ~G~vARV~~GqvI~sir~~~~~~~~a~EALrrAk~-KlPg~qkI 64 (119)
.|||--..-|.|.+++.+.+ .+.++|..+-. +-|...+|
T Consensus 40 ~G~V~N~~dG~Vei~~eG~~----~~l~~f~~~l~~~gP~~a~V 79 (102)
T 1urr_A 40 RGWCMNTRDGTVKGQLEAPM----MNLMEMKHWLENNRIPNAKV 79 (102)
T ss_dssp EEEEEECTTSCEEEEEEECH----HHHHHHHHHHHHCCSTTCEE
T ss_pred cEEEEECCCCCEEEEEEcCH----HHHHHHHHHHHhcCCCccEE
Confidence 68999999999999999863 33444444433 45665555
No 73
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=20.87 E-value=87 Score=19.98 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=17.4
Q ss_pred EeeCCCEEEEEEecCC-C--HHHHHHHHHhc
Q 033447 27 RVAIGQVLLSVRCKDS-N--SHHAQEALRRA 54 (119)
Q Consensus 27 RV~~GqvI~sir~~~~-~--~~~a~EALrrA 54 (119)
++++|++|++|-+.+- + .+.+.+.|+.+
T Consensus 61 ~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 91 (116)
T 2dm8_A 61 RLWAGDQILEVNGVDLRNSSHEEAITALRQT 91 (116)
T ss_dssp CCCTTCEEEEETTEECSSSCHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 4888888888866532 1 34555555543
No 74
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=20.75 E-value=1.1e+02 Score=19.50 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=24.9
Q ss_pred EeeCCCEEEEEEecC---CCHHHHHHHHHhccccCCCceEEEEeCc
Q 033447 27 RVAIGQVLLSVRCKD---SNSHHAQEALRRAKFKFPGRQKIIVSRK 69 (119)
Q Consensus 27 RV~~GqvI~sir~~~---~~~~~a~EALrrAk~KlPg~qkIvis~k 69 (119)
++++|++|++|-+.+ ...+.+.++++.+ +....+.+.+.
T Consensus 50 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~ 91 (106)
T 4amh_A 50 KLQIGDKLLAVNNVALEEVTHEEAVTALKNT----SDFVYLKVAKP 91 (106)
T ss_dssp CCCTTCEEEEETTEECSSCCHHHHHHHHHSC----CSEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhCC----CCeEEEEEEeC
Confidence 488999999987653 2345666677654 34556655554
No 75
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=20.72 E-value=57 Score=20.10 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=13.2
Q ss_pred eeCCCEEEEEEecC---CCHHHHHHHHHhc
Q 033447 28 VAIGQVLLSVRCKD---SNSHHAQEALRRA 54 (119)
Q Consensus 28 V~~GqvI~sir~~~---~~~~~a~EALrrA 54 (119)
+++|+.|++|-+.+ .+.+.+.+.|+.+
T Consensus 47 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 76 (93)
T 3o46_A 47 IHVGDELREVNGIPVEDKRPEEIIQILAQS 76 (93)
T ss_dssp CCTTCEEEEETTEESTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 55566666654432 2344455555443
No 76
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=20.66 E-value=1.1e+02 Score=18.45 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=17.0
Q ss_pred eeCCCEEEEEEecC-C--CHHHHHHHHHh
Q 033447 28 VAIGQVLLSVRCKD-S--NSHHAQEALRR 53 (119)
Q Consensus 28 V~~GqvI~sir~~~-~--~~~~a~EALrr 53 (119)
+++|++|++|-+.+ . +.+.+.++|+.
T Consensus 42 l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 70 (92)
T 3cyy_A 42 IQEGDVVLKINGTVTENMSLTDAKTLIER 70 (92)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 77888888886653 2 44555666654
No 77
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.20 E-value=96 Score=19.88 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=18.3
Q ss_pred EEeeCCCEEEEEEecCC-C--HHHHHHHHHh
Q 033447 26 ARVAIGQVLLSVRCKDS-N--SHHAQEALRR 53 (119)
Q Consensus 26 ARV~~GqvI~sir~~~~-~--~~~a~EALrr 53 (119)
|.+++|++|++|-+.+- + .+.+.++|+.
T Consensus 60 agL~~GD~I~~ing~~v~~~~~~~~~~~l~~ 90 (114)
T 1uew_A 60 AKLKVGDRILAVNGQSIINMPHADIVKLIKD 90 (114)
T ss_dssp SSCCTTCBEEEETTBCTTTSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 45788888888876642 2 2566666664
No 78
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=20.01 E-value=50 Score=20.22 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=9.1
Q ss_pred eeCCCEEEEEEec
Q 033447 28 VAIGQVLLSVRCK 40 (119)
Q Consensus 28 V~~GqvI~sir~~ 40 (119)
+++|++|++|-+.
T Consensus 52 l~~GD~I~~vng~ 64 (94)
T 2fe5_A 52 LQIGDRLLAVNNT 64 (94)
T ss_dssp CCTTCEEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 6777777777554
Done!