RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 033447
         (119 letters)



>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology
           modeling,de novo modeling,ribos proteins,novel ribosomal
           proteins, ribosome; 5.50A {Triticum aestivum} PDB:
           3izr_I 1s1i_I 3jyw_I
          Length = 224

 Score =  168 bits (426), Expect = 2e-54
 Identities = 94/119 (78%), Positives = 106/119 (89%)

Query: 1   MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 119
           RQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T 
Sbjct: 162 RQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAETI 220


>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome,
           eukaryotic initiation factor 60S, translation, large
           ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
           4a1a_H 4a1c_H 4a1e_H
          Length = 215

 Score =  162 bits (411), Expect = 3e-52
 Identities = 64/113 (56%), Positives = 84/113 (74%)

Query: 1   MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60
           MLSCAGADRLQ+GMRGAFGK  G  ARV IG +L SVR K+ +  +A +AL RAK KFPG
Sbjct: 102 MLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKAKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRA 113
           RQK++ S+KWGFTK +RA Y R +++ ++V DG N K++G  GPL++ +  R 
Sbjct: 162 RQKVVTSQKWGFTKLTRAQYSRLRNQKKLVTDGSNVKVIGERGPLSRLELFRK 214


>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal
           subunit, ribosomal protein/RNA complex; 8.70A {Canis
           familiaris}
          Length = 214

 Score =  159 bits (403), Expect = 5e-51
 Identities = 68/113 (60%), Positives = 84/113 (74%)

Query: 1   MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKPQGT A+V IGQV++S+R K  N  H  EALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRA 113
           RQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL + +   +
Sbjct: 162 RQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS 214


>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle,
           tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB:
           3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I
          Length = 219

 Score =  154 bits (391), Expect = 4e-49
 Identities = 61/107 (57%), Positives = 73/107 (68%)

Query: 1   MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60
           MLSCAGADRLQ GMRGA+GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG
Sbjct: 100 MLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPG 159

Query: 61  RQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 107
           +QKII+S+KWGFT   R +YL+ +    +  DG   K L   G L  
Sbjct: 160 QQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSLEN 206


>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
          Length = 151

 Score =  121 bits (305), Expect = 6e-37
 Identities = 60/80 (75%), Positives = 68/80 (85%)

Query: 1   MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPG
Sbjct: 71  MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPG 130

Query: 61  RQKIIVSRKWGFTKFSRADY 80
           RQKI +S+KWGFTKF+  ++
Sbjct: 131 RQKIHISKKWGFTKFNADEF 150


>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex,
           RNA-RNA complex, PROT complex, peptidyl transferase
           reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
           {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H*
           1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H*
           1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H*
           2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
          Length = 171

 Score =  103 bits (259), Expect = 1e-29
 Identities = 29/67 (43%), Positives = 37/67 (55%)

Query: 1   MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60
             + AGADR+  GMR AFGK  GT ARV  G+ L +  C   ++ H +EA RRA  K   
Sbjct: 100 QATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITP 159

Query: 61  RQKIIVS 67
             +I  S
Sbjct: 160 SCRIDSS 166


>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA,
           protein-protein; 2.40A {Haloarcula marismortui} SCOP:
           d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J*
           1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J*
           1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H*
           1giy_P ...
          Length = 157

 Score = 94.3 bits (234), Expect = 4e-26
 Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 8   DRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVS 67
           ++   GMR  FGK  GT AR                    + A RRA  K      I  S
Sbjct: 95  EQDGDGMRAPFGKSVGTAARSHGANHDFIAWVNP--DPAVEFAWRRAYMKVTPTVNIDSS 152

Query: 68  RK 69
             
Sbjct: 153 PA 154


>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit,
           ribonucleoprotein, RNA-binding, rRNA-binding,
           tRNA-binding, methylation; 2.91A {Deinococcus
           radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J
           1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K*
           1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N
           1vou_N 1vow_N 1voy_N ...
          Length = 142

 Score = 49.2 bits (117), Expect = 8e-09
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 10  LQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 69
            +T M    G  +   + V  G+V+  V         A+EA R A  K P + K++    
Sbjct: 80  AETRMGKGKGAVEYWVSVVKPGRVMFEVAGV--TEEQAKEAFRLAGHKLPIQTKMVKREV 137

Query: 70  W 70
           +
Sbjct: 138 Y 138


>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA,
           transfer RNA, 23S ribosomal subunit, ribosome recycling
           factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
           1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M
           2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M
           2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
          Length = 136

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 10  LQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 66
           L   M    G  +   A +  G+VL  +         A+EA + A  K P +   + 
Sbjct: 78  LAVRMGKGKGNVEYWVALIQPGKVLYEMDGV--PEELAREAFKLAAAKLPIKTTFVT 132


>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
          Length = 135

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 9   RLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 66
             +T M    G P+   A V  G++L  +       + A+ A+  A  K P R + I+
Sbjct: 78  PAETRMGSGKGSPEYWVAVVKPGRILYEISGV--AENIARRAVAIAASKMPIRTQFII 133


>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13,
           mitochondrial; mitochondrial ribosome, large ribosomal
           subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB:
           3iy9_I
          Length = 118

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 10  LQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQK 63
           +   M G  G        V  G++++ +  +       Q  L +   K P   K
Sbjct: 66  VGHRMGGGKGAIDHYVTPVKAGRLVVEMGGR-CEFEEVQGFLDQVAHKLPFAAK 118


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.011
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 55/131 (41%)

Query: 1   MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSH-----HAQEALRRAK 55
           MLS +   + Q                       +      +NSH       + +L    
Sbjct: 338 MLSISNLTQEQ-----------------------VQDYVNKTNSHLPAGKQVEISL---- 370

Query: 56  FKFPGRQKIIVSRKWGFTK----FSRADYLRWKSENRIVPDGVN-AKLLGCHGPLAQRQP 110
               G + ++VS   G  +     +    LR K++    P G++ +++     P ++R+ 
Sbjct: 371 --VNGAKNLVVS---GPPQSLYGLNLT--LR-KAK---APSGLDQSRI-----PFSERKL 414

Query: 111 --GRAFLEATT 119
                FL   +
Sbjct: 415 KFSNRFLPVAS 425


>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
           2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
           c.1.8.1
          Length = 515

 Score = 29.0 bits (65), Expect = 0.31
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 54  AKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRI 89
            KF FPGR     S KW +  F   D+   +  +RI
Sbjct: 140 TKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRI 175


>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
           halophilic, N domain, starch binding, hydrolase; HET:
           G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
           3bcd_A* 3bcf_A
          Length = 599

 Score = 26.8 bits (59), Expect = 2.3
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 54  AKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRI 89
             F FPGR     +  W    F   D+  +  E+  
Sbjct: 261 TGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGK 296


>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
           alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
           {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
           2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
          Length = 485

 Score = 26.4 bits (58), Expect = 2.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 54  AKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSEN 87
            +F FPGR     S KW +  F   D+ + +  N
Sbjct: 141 TRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLN 174


>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
           {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
           1ud6_A 1ud8_A 1ud3_A
          Length = 480

 Score = 26.4 bits (58), Expect = 3.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 55  KFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRI 89
            F F GR       KW +  F+  D+ +   EN I
Sbjct: 140 GFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHI 174


>1zt2_A DNA primase small subunit; heterodimeric complex, replication,
          transferase; HET: DNA; 3.33A {Sulfolobus solfataricus}
          SCOP: d.264.1.1
          Length = 330

 Score = 26.3 bits (57), Expect = 3.1
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 68 RKWGFTKFSRADYLRWKS 85
          R++    F    Y+R  S
Sbjct: 36 REFALQPFGSDTYVRHLS 53


>1v33_A DNA primase small subunit; nucleotidyl transferase, riken
          structural genomics/proteomics initiative, RSGI,
          structural genomics; HET: DNA; 1.80A {Pyrococcus
          horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
          Length = 366

 Score = 26.1 bits (56), Expect = 3.6
 Identities = 4/18 (22%), Positives = 6/18 (33%)

Query: 68 RKWGFTKFSRADYLRWKS 85
          R++GF         R   
Sbjct: 55 REFGFDHSGEGPSDRKNQ 72


>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A
           {Thermosynechococcus elongatus} SCOP: a.118.1.22
           a.261.1.1 PDB: 1z3y_A
          Length = 238

 Score = 25.9 bits (56), Expect = 3.9
 Identities = 3/34 (8%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 55  KFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENR 88
           +F +  ++++ +     + +    + + W+   R
Sbjct: 165 RFGYSVQRQLWLGCGQNWDRL--WEKIGWRQGKR 196


>1z4r_A General control of amino acid synthesis protein 5-like 2; GCN5,
           acetyltransferase, SGC, structural genomics, structural
           genomics consortium; HET: ACO; 1.74A {Homo sapiens}
           SCOP: d.108.1.1 PDB: 1cm0_B*
          Length = 168

 Score = 25.7 bits (56), Expect = 4.2
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 68  RKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCH 102
           +K GF+K  +    R+      + D   A L+ C 
Sbjct: 129 KKQGFSKDIKVPKSRYL---GYIKDYEGATLMECE 160


>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein
           complex, tuberculos structural genomics consortium,
           protein binding; HET: MLZ FLC; 2.15A {Mycobacterium
           tuberculosis}
          Length = 96

 Score = 25.0 bits (54), Expect = 4.4
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 68  RKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCH 102
           R   F   +  D+L W + +R     +   +    
Sbjct: 13  RSVNFDPDAWEDFLFWLAADRKTARRITRLIGEIQ 47


>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
           hydrolase, metal-binding, secreted; 1.40A {Bacillus
           amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
           1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
          Length = 483

 Score = 25.5 bits (56), Expect = 4.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 55  KFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRI 89
            F+FPGR       KW +  F  AD+   +  +RI
Sbjct: 138 DFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRI 172


>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum,
           molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
           {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1
           PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
          Length = 809

 Score = 25.7 bits (57), Expect = 5.1
 Identities = 3/13 (23%), Positives = 5/13 (38%)

Query: 14  MRGAFGKPQGTCA 26
            R +F   +   A
Sbjct: 386 YRCSFRVTEAVYA 398


>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand
           binding protein; 1.78A {Synechocystis SP} SCOP:
           a.118.1.22 a.261.1.1
          Length = 233

 Score = 25.2 bits (54), Expect = 6.9
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 55  KFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVN 95
            F F  ++++ ++    FTK      + WKS N        
Sbjct: 157 NFGFSVQRRLWLASGKEFTKL--WPKIGWKSGNVWTRWPKG 195


>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; NMR {Sindbis
           virus}
          Length = 423

 Score = 25.0 bits (54), Expect = 7.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 35  LSVRCKDSNSHHAQEALRRAKFKFPGRQK 63
           ++V    SNS  +    R+ K KF GR+K
Sbjct: 111 VTVSIVSSNSATSCTLARKIKPKFVGREK 139


>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase,
           peroxidase, redox-ACT center; 2.02A {Saccharomyces
           cerevisiae}
          Length = 171

 Score = 24.9 bits (55), Expect = 7.4
 Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 4/25 (16%)

Query: 51  LRRAKFKFPGRQKIIVSRKWGFTKF 75
           L+  K    G + I    KW F KF
Sbjct: 118 LKSQKSGMLGLRGI----KWNFEKF 138


>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor;
          1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A
          2a6q_E
          Length = 84

 Score = 24.2 bits (52), Expect = 7.6
 Identities = 5/17 (29%), Positives = 11/17 (64%)

Query: 72 FTKFSRADYLRWKSENR 88
          +++ S  DYL W+  ++
Sbjct: 5  WSEESWDDYLYWQETDK 21


>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein;
           HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A
           3muw_U 1z8y_A 1z8y_B
          Length = 750

 Score = 25.0 bits (54), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 35  LSVRCKDSNSHHAQEALRRAKFKFPGRQK 63
           ++V    SNS  +    R+ K KF GR+K
Sbjct: 111 VTVSIVSSNSATSCTLARKIKPKFVGREK 139


>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P
           phosphatase, structural GE joint center for structural
           genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP:
           c.50.1.2 PDB: 2fav_A*
          Length = 182

 Score = 24.6 bits (54), Expect = 9.0
 Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 4/43 (9%)

Query: 16  GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKF 58
           G FG       +V +  V   V    ++    +    +    +
Sbjct: 136 GIFGAKPLQSLQVCVQTVRTQVYIAVND----KALYEQVVMDY 174


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,858,492
Number of extensions: 97288
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 33
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)