BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033448
         (119 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O75095|MEGF6_HUMAN Multiple epidermal growth factor-like domains protein 6 OS=Homo
           sapiens GN=MEGF6 PE=1 SV=4
          Length = 1541

 Score = 29.6 bits (65), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILND 87
           P+E P+  LD +LP   PLP  ++L D
Sbjct: 453 PLEEPMVDLDGELPFVRPLPHIAVLQD 479


>sp|O74365|SOL1_SCHPO SWI/SNF chromatin-remodeling complex subunit sol1
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=sol1 PE=1 SV=1
          Length = 865

 Score = 29.3 bits (64), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 8   FSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFKPVEHPIE 67
           F+  R       +   ER   P   A T   P T  T+++A        V ++P++ PI+
Sbjct: 336 FTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPTVQTSSSAAPVDSAEPVAYQPIKKPID 395

Query: 68  PL 69
           P+
Sbjct: 396 PM 397


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,546,520
Number of Sequences: 539616
Number of extensions: 1897154
Number of successful extensions: 5956
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5940
Number of HSP's gapped (non-prelim): 31
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)