Query 033448
Match_columns 119
No_of_seqs 30 out of 32
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 14:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12714 TILa: TILa domain 36.7 17 0.00037 23.1 0.8 17 73-89 36-52 (56)
2 PF07629 DUF1590: Protein of u 30.9 23 0.00049 21.6 0.6 10 75-84 5-14 (32)
3 PF10736 DUF2527: Protein of u 30.8 17 0.00038 22.9 0.1 7 1-7 1-7 (38)
4 PF01308 Chlam_OMP: Chlamydia 27.4 24 0.00052 31.4 0.4 15 79-93 28-42 (389)
5 PRK13867 type IV secretion sys 17.9 55 0.0012 22.7 0.6 11 74-84 51-61 (65)
6 PF09271 LAG1-DNAbind: LAG1, D 13.7 90 0.0019 23.7 0.9 21 72-94 17-37 (140)
7 KOG0124 Polypyrimidine tract-b 12.1 61 0.0013 29.7 -0.5 25 2-27 498-522 (544)
8 PF13465 zf-H2C2_2: Zinc-finge 12.0 67 0.0015 17.3 -0.2 9 71-79 11-19 (26)
9 KOG2004 Mitochondrial ATP-depe 11.5 1.1E+02 0.0024 30.1 1.0 15 5-19 466-487 (906)
10 PRK09783 copper/silver efflux 10.7 1.7E+02 0.0037 24.7 1.7 15 64-78 47-62 (409)
No 1
>PF12714 TILa: TILa domain
Probab=36.68 E-value=17 Score=23.13 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=15.3
Q ss_pred CCcCCCCCCCcccccch
Q 033448 73 LPIQCPLPEPSILNDGR 89 (119)
Q Consensus 73 ~Pv~CP~PE~sIl~DG~ 89 (119)
+|.+|++-|-+.++||.
T Consensus 36 ~~~~C~~~e~C~~~~G~ 52 (56)
T PF12714_consen 36 QPSSCPPGEVCQIQNGV 52 (56)
T ss_pred eCCCCCCCCEeEeCCCE
Confidence 57899999999999996
No 2
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=30.85 E-value=23 Score=21.61 Aligned_cols=10 Identities=50% Similarity=1.016 Sum_probs=8.0
Q ss_pred cCCCCCCCcc
Q 033448 75 IQCPLPEPSI 84 (119)
Q Consensus 75 v~CP~PE~sI 84 (119)
..||+||-|+
T Consensus 5 a~~pppeisl 14 (32)
T PF07629_consen 5 ADCPPPEISL 14 (32)
T ss_pred CCCCCCccee
Confidence 4699999775
No 3
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=30.84 E-value=17 Score=22.89 Aligned_cols=7 Identities=71% Similarity=1.170 Sum_probs=5.8
Q ss_pred Cccceee
Q 033448 1 MVGIFSR 7 (119)
Q Consensus 1 MVGiFsR 7 (119)
|-|||||
T Consensus 1 M~GIFSK 7 (38)
T PF10736_consen 1 MNGIFSK 7 (38)
T ss_pred CcccccH
Confidence 7899985
No 4
>PF01308 Chlam_OMP: Chlamydia major outer membrane protein; InterPro: IPR000604 The major outer membrane protein of Chlamydia contains four symmetrically spaced variable domains (VDs I to IV). This protein maintains the structural rigidity of the outer membrane and facilitates porin formation, permitting diffusion of solutes through the intracellular reticulate body membrane. It is believed to play a role in pathogenesis and possibly adhesion. Along with the lipopolysaccharide, the major out membrane protein (MOMP) makes up the surface of the elementary body cell. Disulphide bond interactions within and between MOMP molecules and other components form high molecular weight oligomers. The MOMP is the protein used to determine the different serotypes.; GO: 0005198 structural molecule activity, 0015288 porin activity, 0009279 cell outer membrane
Probab=27.43 E-value=24 Score=31.41 Aligned_cols=15 Identities=40% Similarity=0.900 Sum_probs=12.3
Q ss_pred CCCCcccccchhhHH
Q 033448 79 LPEPSILNDGRIWKE 93 (119)
Q Consensus 79 ~PE~sIl~DG~iwke 93 (119)
|-|||++.||.+|+-
T Consensus 28 PAePsl~IdGi~wEg 42 (389)
T PF01308_consen 28 PAEPSLMIDGILWEG 42 (389)
T ss_pred CCCcccccCCccccc
Confidence 347799999999983
No 5
>PRK13867 type IV secretion system chaperone VirE1; Provisional
Probab=17.94 E-value=55 Score=22.70 Aligned_cols=11 Identities=45% Similarity=1.204 Sum_probs=8.3
Q ss_pred CcCCCCCCCcc
Q 033448 74 PIQCPLPEPSI 84 (119)
Q Consensus 74 Pv~CP~PE~sI 84 (119)
-.+||+||-..
T Consensus 51 vl~cplpednl 61 (65)
T PRK13867 51 VLRCPLPEDNL 61 (65)
T ss_pred hhcCCCCcccc
Confidence 46999998653
No 6
>PF09271 LAG1-DNAbind: LAG1, DNA binding; InterPro: IPR015351 This domain is found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1. It adopts a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding []. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3IAG_C 3BRG_C 3NBN_A 2F8X_C 3V79_C.
Probab=13.70 E-value=90 Score=23.66 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=11.2
Q ss_pred CCCcCCCCCCCcccccchhhHHH
Q 033448 72 DLPIQCPLPEPSILNDGRIWKER 94 (119)
Q Consensus 72 D~Pv~CP~PE~sIl~DG~iwker 94 (119)
.|=+=|||| +|+=-|-.|+-+
T Consensus 17 EKRF~CPPP--~v~L~G~~w~~~ 37 (140)
T PF09271_consen 17 EKRFFCPPP--CVYLSGPGWKIK 37 (140)
T ss_dssp -----SS----EEEEESTHHHHH
T ss_pred cccccCCCC--eEEEECCCcCcc
Confidence 344679998 777789999644
No 7
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=12.07 E-value=61 Score=29.75 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=21.4
Q ss_pred ccceeeeccccCCCcccccccccccc
Q 033448 2 VGIFSRFSVGRAGHRRTQSAIDEREV 27 (119)
Q Consensus 2 VGiFsRfs~gr~~hRrtqs~~d~re~ 27 (119)
|-||-.||.+.-.| |.+.+||+|--
T Consensus 498 VKIFVefS~~~e~~-rak~ALdGRfF 522 (544)
T KOG0124|consen 498 VKIFVEFSIASETH-RAKQALDGRFF 522 (544)
T ss_pred heeeeeechhhHHH-HHHHhhcccee
Confidence 77999999999888 77889999843
No 8
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=12.00 E-value=67 Score=17.29 Aligned_cols=9 Identities=33% Similarity=1.054 Sum_probs=6.7
Q ss_pred CCCCcCCCC
Q 033448 71 NDLPIQCPL 79 (119)
Q Consensus 71 ~D~Pv~CP~ 79 (119)
.++|++||.
T Consensus 11 ~~k~~~C~~ 19 (26)
T PF13465_consen 11 GEKPYKCPY 19 (26)
T ss_dssp SSSSEEESS
T ss_pred CCCCCCCCC
Confidence 468888874
No 9
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=11.53 E-value=1.1e+02 Score=30.06 Aligned_cols=15 Identities=73% Similarity=1.099 Sum_probs=12.0
Q ss_pred eeeecccc-------CCCcccc
Q 033448 5 FSRFSVGR-------AGHRRTQ 19 (119)
Q Consensus 5 FsRfs~gr-------~~hRrtq 19 (119)
|-|||+|. .|||||-
T Consensus 466 FfRfSvGG~tDvAeIkGHRRTY 487 (906)
T KOG2004|consen 466 FFRFSVGGMTDVAEIKGHRRTY 487 (906)
T ss_pred eEEEeccccccHHhhcccceee
Confidence 88999985 4799973
No 10
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=10.75 E-value=1.7e+02 Score=24.70 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=0.0
Q ss_pred CCCCCCCC-CCCcCCC
Q 033448 64 HPIEPLDN-DLPIQCP 78 (119)
Q Consensus 64 HP~EP~d~-D~Pv~CP 78 (119)
.||.|.-. |+|=|||
T Consensus 47 ~pm~p~~~~~~pg~~p 62 (409)
T PRK09783 47 DPMYPNTRFDKPGKSP 62 (409)
T ss_pred CCCCCCcCCCCCCCCC
Done!