Query 033448
Match_columns 119
No_of_seqs 30 out of 32
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 23:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2emg_A Zinc finger protein 484 25.9 30 0.001 17.8 1.3 10 71-80 37-46 (46)
2 3btp_B Protein VIRE1; TIM barr 25.6 22 0.00075 23.5 0.9 9 75-83 52-60 (63)
3 2ytp_A Zinc finger protein 484 22.0 36 0.0012 17.6 1.2 10 71-80 37-46 (46)
4 2emi_A Zinc finger protein 484 20.7 41 0.0014 17.2 1.2 10 71-80 37-46 (46)
5 2en9_A Zinc finger protein 28 20.5 41 0.0014 17.3 1.2 8 72-79 38-45 (46)
6 2eor_A Zinc finger protein 224 18.1 49 0.0017 16.9 1.1 8 72-79 38-45 (46)
7 3tvj_A Mannan-binding lectin s 16.8 47 0.0016 20.7 1.0 16 73-90 4-19 (86)
8 2em4_A Zinc finger protein 28 16.8 56 0.0019 16.8 1.2 8 72-79 38-45 (46)
9 1zfd_A SWI5; DNA binding motif 16.0 53 0.0018 15.2 0.9 8 72-79 1-8 (32)
10 2eq2_A Zinc finger protein 347 15.9 61 0.0021 16.5 1.2 8 72-79 38-45 (46)
No 1
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.95 E-value=30 Score=17.84 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=7.0
Q ss_pred CCCCcCCCCC
Q 033448 71 NDLPIQCPLP 80 (119)
Q Consensus 71 ~D~Pv~CP~P 80 (119)
.++|++|+.|
T Consensus 37 ~~~~~~C~~~ 46 (46)
T 2emg_A 37 GERPSGPSSG 46 (46)
T ss_dssp CCCCSCSCCC
T ss_pred CCCCCCCCCC
Confidence 3578888764
No 2
>3btp_B Protein VIRE1; TIM barrel, unique topology, novel fold, structural genomics structural proteomics center, ISPC, crown GALL tumor; 2.30A {Agrobacterium tumefaciens str}
Probab=25.60 E-value=22 Score=23.55 Aligned_cols=9 Identities=56% Similarity=1.431 Sum_probs=6.1
Q ss_pred cCCCCCCCc
Q 033448 75 IQCPLPEPS 83 (119)
Q Consensus 75 v~CP~PE~s 83 (119)
.+||+||-.
T Consensus 52 l~CPLPE~N 60 (63)
T 3btp_B 52 LHCPLPEEN 60 (63)
T ss_dssp HTCCCCC--
T ss_pred hcCCCchhh
Confidence 589999854
No 3
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.05 E-value=36 Score=17.56 Aligned_cols=10 Identities=10% Similarity=-0.017 Sum_probs=6.9
Q ss_pred CCCCcCCCCC
Q 033448 71 NDLPIQCPLP 80 (119)
Q Consensus 71 ~D~Pv~CP~P 80 (119)
.++|++|+.+
T Consensus 37 ~~k~~~C~~~ 46 (46)
T 2ytp_A 37 GEKPSGPSSG 46 (46)
T ss_dssp CCCCCSSCCC
T ss_pred CCCCCCCCCC
Confidence 3578888753
No 4
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.69 E-value=41 Score=17.24 Aligned_cols=10 Identities=10% Similarity=-0.017 Sum_probs=6.6
Q ss_pred CCCCcCCCCC
Q 033448 71 NDLPIQCPLP 80 (119)
Q Consensus 71 ~D~Pv~CP~P 80 (119)
.++|++|+.+
T Consensus 37 ~~k~~~C~~~ 46 (46)
T 2emi_A 37 GEKPSGPSSG 46 (46)
T ss_dssp SCCCCSCCCC
T ss_pred CCCCCCCCCC
Confidence 3578888753
No 5
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.47 E-value=41 Score=17.34 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=5.6
Q ss_pred CCCcCCCC
Q 033448 72 DLPIQCPL 79 (119)
Q Consensus 72 D~Pv~CP~ 79 (119)
++|++|+.
T Consensus 38 ~k~~~C~~ 45 (46)
T 2en9_A 38 EKPSGPSS 45 (46)
T ss_dssp SCCCSCCC
T ss_pred CCCCCCCC
Confidence 56777775
No 6
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=18.05 E-value=49 Score=16.86 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=5.1
Q ss_pred CCCcCCCC
Q 033448 72 DLPIQCPL 79 (119)
Q Consensus 72 D~Pv~CP~ 79 (119)
++|++|+.
T Consensus 38 ~kp~~C~~ 45 (46)
T 2eor_A 38 EKPSGPSS 45 (46)
T ss_dssp CCCSSSTT
T ss_pred CCCCCCCC
Confidence 46777764
No 7
>3tvj_A Mannan-binding lectin serine protease 2 A chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens}
Probab=16.84 E-value=47 Score=20.69 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=10.9
Q ss_pred CCcCCCCCCCcccccchh
Q 033448 73 LPIQCPLPEPSILNDGRI 90 (119)
Q Consensus 73 ~Pv~CP~PE~sIl~DG~i 90 (119)
++|.|+.|. .+.+|.+
T Consensus 4 ~~v~C~~P~--~~~nG~~ 19 (86)
T 3tvj_A 4 TIVDCGPPD--DLPSGRV 19 (86)
T ss_dssp CCCBCCSCC--CCTTEEE
T ss_pred eeeeCCCCC--CCCCeEE
Confidence 578999886 3456643
No 8
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.78 E-value=56 Score=16.78 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=5.4
Q ss_pred CCCcCCCC
Q 033448 72 DLPIQCPL 79 (119)
Q Consensus 72 D~Pv~CP~ 79 (119)
++|++|+.
T Consensus 38 ~k~~~C~~ 45 (46)
T 2em4_A 38 EKPSGPSS 45 (46)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 56777764
No 9
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=16.02 E-value=53 Score=15.23 Aligned_cols=8 Identities=38% Similarity=0.771 Sum_probs=6.0
Q ss_pred CCCcCCCC
Q 033448 72 DLPIQCPL 79 (119)
Q Consensus 72 D~Pv~CP~ 79 (119)
++|++|+.
T Consensus 1 ek~~~C~~ 8 (32)
T 1zfd_A 1 DRPYSCDH 8 (32)
T ss_dssp CCSBCCCC
T ss_pred CCCCcCcC
Confidence 47889983
No 10
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=15.94 E-value=61 Score=16.53 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=5.8
Q ss_pred CCCcCCCC
Q 033448 72 DLPIQCPL 79 (119)
Q Consensus 72 D~Pv~CP~ 79 (119)
++|++|+.
T Consensus 38 ~k~~~C~~ 45 (46)
T 2eq2_A 38 EKPSGPSS 45 (46)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 57788875
Done!