Query 033448
Match_columns 119
No_of_seqs 30 out of 32
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 23:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033448.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033448hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zfda_ g.37.1.1 (A:) SWI5 zin 37.6 6.1 0.00045 21.0 1.2 10 72-81 1-10 (32)
2 d1bhia_ g.37.1.1 (A:) Transact 33.4 6.2 0.00045 22.5 0.8 11 71-81 3-13 (38)
3 d1sp2a_ g.37.1.1 (A:) Transcri 29.5 9.4 0.00069 20.0 1.1 9 73-81 1-9 (31)
4 d1g40a4 g.18.1.1 (A:185-243) C 24.1 12 0.00084 20.8 0.8 12 75-89 1-12 (59)
5 d1ubdc4 g.37.1.1 (C:381-408) Y 23.1 14 0.001 19.2 1.0 9 73-81 1-9 (28)
6 d1a1ia1 g.37.1.1 (A:103-131) Z 18.7 15 0.0011 19.1 0.5 9 73-81 1-9 (29)
7 d1p7aa_ g.37.1.1 (A:) Kruppel- 18.1 19 0.0014 19.0 0.9 14 71-84 8-21 (37)
8 d2glia3 g.37.1.1 (A:168-197) F 17.4 23 0.0017 18.3 1.1 9 73-81 1-9 (30)
9 d1yeya1 c.1.11.2 (A:184-435) R 15.5 18 0.0013 24.7 0.4 12 85-96 241-252 (252)
10 d1yuja_ g.37.1.1 (A:) GAGA fac 14.8 35 0.0026 20.4 1.6 21 64-84 14-34 (54)
No 1
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.59 E-value=6.1 Score=21.05 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=8.2
Q ss_pred CCCcCCCCCC
Q 033448 72 DLPIQCPLPE 81 (119)
Q Consensus 72 D~Pv~CP~PE 81 (119)
|||+.|+-|.
T Consensus 1 ErP~~C~~pg 10 (32)
T d1zfda_ 1 DRPYSCDHPG 10 (32)
T ss_dssp CCSBCCCCTT
T ss_pred CcCeECcCCC
Confidence 6899999873
No 2
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.45 E-value=6.2 Score=22.54 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=9.3
Q ss_pred CCCCcCCCCCC
Q 033448 71 NDLPIQCPLPE 81 (119)
Q Consensus 71 ~D~Pv~CP~PE 81 (119)
.|||+.|..|-
T Consensus 3 ddkPF~C~~pG 13 (38)
T d1bhia_ 3 DDKPFLCTAPG 13 (38)
T ss_dssp TCCCEECCCTT
T ss_pred CCCceecCCCC
Confidence 39999998875
No 3
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.47 E-value=9.4 Score=19.97 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=7.0
Q ss_pred CCcCCCCCC
Q 033448 73 LPIQCPLPE 81 (119)
Q Consensus 73 ~Pv~CP~PE 81 (119)
||++||-|.
T Consensus 1 kpf~C~~~~ 9 (31)
T d1sp2a_ 1 RPFMCTWSY 9 (31)
T ss_dssp CCCBCCSTT
T ss_pred CcCCCcCCC
Confidence 689998764
No 4
>d1g40a4 g.18.1.1 (A:185-243) Complement control protein {Vaccinia virus [TaxId: 10245]}
Probab=24.07 E-value=12 Score=20.76 Aligned_cols=12 Identities=42% Similarity=1.143 Sum_probs=7.8
Q ss_pred cCCCCCCCcccccch
Q 033448 75 IQCPLPEPSILNDGR 89 (119)
Q Consensus 75 v~CP~PE~sIl~DG~ 89 (119)
|+||.|. | .+|.
T Consensus 1 V~C~~P~--~-~ng~ 12 (59)
T d1g40a4 1 VKCPHPT--I-SNGY 12 (59)
T ss_dssp CCCCCCC--C-SSEE
T ss_pred CCCcCCC--C-CCCE
Confidence 7898774 4 3554
No 5
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.05 E-value=14 Score=19.15 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=7.0
Q ss_pred CCcCCCCCC
Q 033448 73 LPIQCPLPE 81 (119)
Q Consensus 73 ~Pv~CP~PE 81 (119)
||++|+.|.
T Consensus 1 rPf~C~~~g 9 (28)
T d1ubdc4 1 RPYVCPFDG 9 (28)
T ss_dssp CCCCCCSTT
T ss_pred CCcCCCCCC
Confidence 689998763
No 6
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.69 E-value=15 Score=19.06 Aligned_cols=9 Identities=33% Similarity=0.929 Sum_probs=7.0
Q ss_pred CCcCCCCCC
Q 033448 73 LPIQCPLPE 81 (119)
Q Consensus 73 ~Pv~CP~PE 81 (119)
||++|+.|.
T Consensus 1 Kp~~C~~~g 9 (29)
T d1a1ia1 1 RPYACPVES 9 (29)
T ss_dssp CCEECCSTT
T ss_pred CCeECCCCC
Confidence 688998764
No 7
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.08 E-value=19 Score=18.99 Aligned_cols=14 Identities=36% Similarity=0.543 Sum_probs=9.8
Q ss_pred CCCCcCCCCCCCcc
Q 033448 71 NDLPIQCPLPEPSI 84 (119)
Q Consensus 71 ~D~Pv~CP~PE~sI 84 (119)
.+||++|+.=.-+-
T Consensus 8 geKPy~C~~C~k~F 21 (37)
T d1p7aa_ 8 GIKPFQCPDCDRSF 21 (37)
T ss_dssp CSSSBCCTTTCCCB
T ss_pred CccCeEeCCCCCEe
Confidence 47999998754443
No 8
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.42 E-value=23 Score=18.31 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=6.8
Q ss_pred CCcCCCCCC
Q 033448 73 LPIQCPLPE 81 (119)
Q Consensus 73 ~Pv~CP~PE 81 (119)
||++|+-|.
T Consensus 1 kp~~C~~~g 9 (30)
T d2glia3 1 KPHKCTFEG 9 (30)
T ss_dssp CCCCCCSTT
T ss_pred CCeeCCCCC
Confidence 689998753
No 9
>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=15.47 E-value=18 Score=24.68 Aligned_cols=12 Identities=42% Similarity=0.966 Sum_probs=9.7
Q ss_pred cccchhhHHHHh
Q 033448 85 LNDGRIWKERVS 96 (119)
Q Consensus 85 l~DG~iwker~s 96 (119)
..||+.|+||++
T Consensus 241 ~~~g~~~~~~~~ 252 (252)
T d1yeya1 241 YPDGRFWVEDLA 252 (252)
T ss_dssp TTTSHHHHHHCC
T ss_pred CCCCcHHhhccC
Confidence 458999999973
No 10
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}
Probab=14.85 E-value=35 Score=20.35 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCcCCCCCCCcc
Q 033448 64 HPIEPLDNDLPIQCPLPEPSI 84 (119)
Q Consensus 64 HP~EP~d~D~Pv~CP~PE~sI 84 (119)
.|-.-.-.|||..||.=---|
T Consensus 14 ~~ksrs~s~qpatcpic~avi 34 (54)
T d1yuja_ 14 KPRSRSQSEQPATCPICYAVI 34 (54)
T ss_dssp CCTTTTTTSCCEECTTTCCEE
T ss_pred CccccccccCCCCCchHHHHH
Confidence 344556689999999865443
Done!