BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033449
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 3/101 (2%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A + + + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKPTKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
SAFFVFLE+FR +K+E+PNVKAVSAVGKAGG+KWKS++ A
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/59 (72%), Positives = 50/59 (84%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
TK K A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT A
Sbjct: 23 TKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAA 81
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 39 SNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
+ K K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AVGKAGGEKWKSL
Sbjct: 18 TKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSL 77
Query: 99 TDA 101
+D+
Sbjct: 78 SDS 80
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 47/53 (88%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP KAVSAVGKA G KWK+++DA
Sbjct: 37 AAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDA 89
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 46/50 (92%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSE 89
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 48/55 (87%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ VGKA G+KWKSL+D+
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDS 83
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 44/54 (81%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ VGKA G +WK++TD
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTD 79
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 17/102 (16%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 44
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
PSAFFVF+EEFRK +K+++P K+V+AVGKA G++WKSL+++
Sbjct: 45 PSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSES 86
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 44/50 (88%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
DPNKPKR PSAFFVF+ EFR+ +KQ++P K+V+AVGKA GE+WKSL+++
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSES 87
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 36 SRSSNKRTK----NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 91
SRS++ R K V KDPN+PK+PPS FFVFL++FRK + +P+ K+V VG+A
Sbjct: 10 SRSTDDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAA 69
Query: 92 GEKWKSLTD 100
G+KWK++T+
Sbjct: 70 GKKWKTMTE 78
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 37/44 (84%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
PK+P +AFF FL++FRK Y++E+P+VK++ +GK GEKWK++T
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMT 106
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A K GGEKWKSLT+
Sbjct: 100 KKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDA-AKIGGEKWKSLTE 158
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN PKRPPSAFF+F EFR K +P + ++ V K GE W +L+D
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSD 136
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 98
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
S+ +TK V+ KKDPN PKR SA+ F E R ++E+P + + VGK GE+WK+
Sbjct: 7 STRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGI-SFGQVGKMLGERWKA 65
Query: 98 LTDA 101
L+D+
Sbjct: 66 LSDS 69
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDS 137
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
KKDPN PKRPPS FF+F EF K +P + + V K GE WK+L D+
Sbjct: 86 KKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI-PIGDVAKKLGEMWKNLNDS 136
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSD 136
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSD 135
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDS 137
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 136
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
KDP KP+ S++ F++ R+ +K++HP S K E+WK+++
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMS 52
>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
GN=HMGB1P1 PE=5 SV=1
Length = 211
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMW 133
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
AKKDPN PKR SA+ F E R+ ++E+P V + VGK GE+WK+L+D
Sbjct: 19 AKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSD 69
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
DPN PKR SA+ F + R + ++P + A VGKA GEKWK+LTDA
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNPGI-AFGQVGKALGEKWKTLTDA 69
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K AKKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L +
Sbjct: 14 TKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWKALNE 67
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
R K V+S K KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK+++
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMS 587
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KR+ + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NVKAVSAVGKAGGEKWKSLT 99
+ +++ + K GE WK ++
Sbjct: 571 GI-SITDLSKKAGEIWKGMS 589
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E R K +HP + ++ K GE W
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMW 133
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DPNKP+ S++ F++ R+ +K++HP+ + + E+WK+++
Sbjct: 2 GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMS 53
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F + R ++E+P + + VGK GEKWKSL+D
Sbjct: 21 KKDPNAPKRGLSAYMFFANDNRDKVREENPGI-SFGQVGKMLGEKWKSLSD 70
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDPN PKR SA+ F E R + + E+P+V VG+ GE+WK+LT
Sbjct: 21 KKDPNAPKRGLSAYMFFANENRDIVRSENPDV-TFGQVGRILGERWKALT 69
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP +P+RPPS+F +F ++ K+E+PN V V KA G+ W + TD
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSTATD 136
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN PKR SA+ F E R + + E+P + + VG+ GEKWK+L+D
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPGI-SFGQVGRVLGEKWKALSD 64
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KRK + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NVKAVSAVGKAGGEKWKSLT 99
+ +++ + K GE WK ++
Sbjct: 571 GI-SITDLSKKAGEIWKGMS 589
>sp|Q02486|ABF2_YEAST ARS-binding factor 2, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ABF2 PE=1 SV=1
Length = 183
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
+E KP+ + A+ +LKAS+ + R + +K PKRP SA+F++L++ R +
Sbjct: 12 HESSKPLFNLAS----TLLKASKRTQLRNELIKQG------PKRPTSAYFLYLQDHRSQF 61
Query: 75 KQEHPNVKAVSAVGKAGGEKWKSLTDAVSSK 105
+E+P ++ + + K GEKW++L + K
Sbjct: 62 VKENPTLRP-AEISKIAGEKWQNLEADIKEK 91
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSK 105
PK+P F + E R +HP+ K+ + K G+KW+SL ++ K
Sbjct: 116 PKKPAGPFIKYANEVRSQVFAQHPD-KSQLDLMKIIGDKWQSLDQSIKDK 164
>sp|P23497|SP100_HUMAN Nuclear autoantigen Sp-100 OS=Homo sapiens GN=SP100 PE=1 SV=3
Length = 879
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
DPN PKRPP AFF+F E+R K EHP + V K G
Sbjct: 765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 805
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
VK KKDPN PKRP SA+F++L E R +K E+ + +V+ + K G++WK +
Sbjct: 544 VKRKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGI-SVTELTKLAGKEWKKI 595
>sp|Q9N1Q5|SP100_HYLLA Nuclear autoantigen Sp-100 (Fragment) OS=Hylobates lar GN=SP100
PE=2 SV=1
Length = 242
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPP AFF+F E+R K EHP + ++ V K E W
Sbjct: 139 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL-SIDDVVKKLAEMW 181
>sp|Q9N1Q6|SP100_GORGO Nuclear autoantigen Sp-100 (Fragment) OS=Gorilla gorilla gorilla
GN=SP100 PE=2 SV=1
Length = 225
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
DPN PKRPP AFF+F E+R K EHP + V K G
Sbjct: 114 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 154
>sp|Q9N1Q7|SP100_PANTR Nuclear autoantigen Sp-100 (Fragment) OS=Pan troglodytes GN=SP100
PE=2 SV=1
Length = 215
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
DPN PKRPP AFF+F E+R K EHP + V K G
Sbjct: 120 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,915,900
Number of Sequences: 539616
Number of extensions: 1400941
Number of successful extensions: 6040
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 227
Number of HSP's that attempted gapping in prelim test: 5666
Number of HSP's gapped (non-prelim): 528
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)