Query 033449
Match_columns 119
No_of_seqs 167 out of 1038
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 14:01:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 5.4E-24 1.2E-28 144.2 9.2 78 41-118 8-86 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.8 2.1E-20 4.6E-25 121.5 7.8 63 55-118 1-63 (77)
3 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 4.1E-20 8.9E-25 115.5 7.9 62 56-118 1-62 (66)
4 cd01388 SOX-TCF_HMG-box SOX-TC 99.8 8E-20 1.7E-24 117.6 7.8 62 56-118 2-63 (72)
5 PF00505 HMG_box: HMG (high mo 99.8 4.8E-19 1E-23 111.6 7.3 62 56-118 1-62 (69)
6 smart00398 HMG high mobility g 99.8 7.1E-19 1.5E-23 110.3 8.0 63 55-118 1-63 (70)
7 cd00084 HMG-box High Mobility 99.8 2.3E-18 5.1E-23 106.8 7.9 62 56-118 1-62 (66)
8 COG5648 NHP6B Chromatin-associ 99.8 8E-19 1.7E-23 133.5 6.1 75 43-118 58-132 (211)
9 PF09011 HMG_box_2: HMG-box do 99.7 9.4E-18 2E-22 108.1 7.7 65 53-118 1-66 (73)
10 KOG0381 HMG box-containing pro 99.7 4.8E-17 1E-21 109.0 7.9 66 52-118 17-84 (96)
11 KOG0526 Nucleosome-binding fac 99.6 1E-15 2.2E-20 129.2 5.8 68 45-117 525-592 (615)
12 KOG0527 HMG-box transcription 99.6 2.1E-15 4.5E-20 122.1 6.6 67 49-116 56-122 (331)
13 KOG3248 Transcription factor T 99.2 4.2E-11 9.1E-16 97.1 6.1 60 55-115 191-250 (421)
14 KOG4715 SWI/SNF-related matrix 99.0 3.4E-10 7.4E-15 91.3 5.8 69 48-117 57-125 (410)
15 KOG0528 HMG-box transcription 98.9 3.2E-10 7E-15 95.2 2.1 61 49-110 319-379 (511)
16 KOG2746 HMG-box transcription 98.6 4.8E-08 1E-12 84.8 3.8 68 49-117 175-244 (683)
17 PF14887 HMG_box_5: HMG (high 97.8 9.8E-05 2.1E-09 48.8 6.3 61 55-117 3-63 (85)
18 PF06382 DUF1074: Protein of u 97.5 0.00025 5.5E-09 53.3 5.1 48 60-112 83-130 (183)
19 PF08073 CHDNT: CHDNT (NUC034) 97.1 0.00074 1.6E-08 41.8 3.4 40 60-100 13-52 (55)
20 PF04690 YABBY: YABBY protein; 97.0 0.0016 3.5E-08 48.7 5.7 48 51-99 117-164 (170)
21 COG5648 NHP6B Chromatin-associ 96.9 0.00068 1.5E-08 52.2 2.7 67 52-119 140-206 (211)
22 PF04769 MAT_Alpha1: Mating-ty 94.9 0.086 1.9E-06 40.4 6.0 55 49-110 37-91 (201)
23 PF06244 DUF1014: Protein of u 93.7 0.098 2.1E-06 37.2 3.7 46 55-101 72-117 (122)
24 TIGR03481 HpnM hopanoid biosyn 85.0 1.4 3.1E-05 33.2 3.9 33 80-113 63-96 (198)
25 PF05494 Tol_Tol_Ttg2: Toluene 84.8 0.8 1.7E-05 33.2 2.4 37 79-116 36-73 (170)
26 PRK15117 ABC transporter perip 83.5 2.1 4.6E-05 32.6 4.3 35 79-114 66-101 (211)
27 KOG3223 Uncharacterized conser 82.6 1.7 3.7E-05 33.4 3.4 44 57-101 166-209 (221)
28 PF12881 NUT_N: NUT protein N 62.4 24 0.00051 29.1 5.5 54 61-115 230-283 (328)
29 PF06945 DUF1289: Protein of u 61.9 17 0.00038 21.6 3.7 25 83-112 23-47 (51)
30 PF11304 DUF3106: Protein of u 57.4 21 0.00047 24.4 4.0 25 86-110 11-35 (107)
31 PF13875 DUF4202: Domain of un 47.3 56 0.0012 24.9 5.1 40 62-105 131-170 (185)
32 PF01352 KRAB: KRAB box; Inte 46.7 18 0.00039 20.7 1.9 29 84-112 3-32 (41)
33 PRK12751 cpxP periplasmic stre 41.1 51 0.0011 24.3 4.0 30 87-116 119-148 (162)
34 PRK10236 hypothetical protein; 40.2 34 0.00075 27.0 3.1 24 87-110 118-141 (237)
35 PRK10363 cpxP periplasmic repr 38.2 59 0.0013 24.3 4.0 32 86-117 112-143 (166)
36 PF12650 DUF3784: Domain of un 37.5 23 0.00049 23.3 1.5 16 94-109 25-40 (97)
37 cd08317 Death_ank Death domain 36.8 20 0.00043 23.1 1.2 21 79-100 3-23 (84)
38 PF00887 ACBP: Acyl CoA bindin 36.3 77 0.0017 20.4 3.9 53 63-117 30-86 (87)
39 KOG1610 Corticosteroid 11-beta 34.5 88 0.0019 25.8 4.7 33 83-115 217-249 (322)
40 COG2854 Ttg2D ABC-type transpo 32.2 40 0.00087 26.0 2.3 27 88-114 77-103 (202)
41 PF05388 Carbpep_Y_N: Carboxyp 31.3 97 0.0021 21.5 4.0 29 84-112 45-73 (113)
42 PF13412 HTH_24: Winged helix- 30.5 55 0.0012 18.3 2.3 23 75-98 12-34 (48)
43 PF15581 Imm35: Immunity prote 29.7 1.1E+02 0.0024 20.7 3.8 30 83-112 31-60 (93)
44 PRK09731 putative general secr 28.4 68 0.0015 24.1 3.0 40 61-109 4-43 (178)
45 PF06628 Catalase-rel: Catalas 28.1 84 0.0018 19.4 3.0 20 91-110 13-32 (68)
46 PRK12750 cpxP periplasmic repr 26.8 1.2E+02 0.0025 22.5 3.9 30 88-117 127-156 (170)
47 PF07813 LTXXQ: LTXXQ motif fa 26.0 1.3E+02 0.0028 18.9 3.7 26 84-109 74-99 (100)
48 PF09164 VitD-bind_III: Vitami 24.9 2E+02 0.0042 18.5 4.8 33 61-94 9-41 (68)
49 PRK14291 chaperone protein Dna 24.7 1.6E+02 0.0035 24.2 4.8 41 68-109 22-66 (382)
50 PRK10266 curved DNA-binding pr 24.7 1.9E+02 0.0042 22.9 5.1 42 68-109 23-67 (306)
51 PF13945 NST1: Salt tolerance 24.6 1.2E+02 0.0026 23.1 3.8 31 83-113 99-129 (190)
52 COG4735 Uncharacterized protei 24.3 1.3E+02 0.0029 23.3 3.9 40 79-119 35-74 (211)
53 PRK14283 chaperone protein Dna 24.0 1.9E+02 0.0041 23.8 5.1 42 67-109 23-68 (378)
54 PHA02662 ORF131 putative membr 23.2 2.4E+02 0.0052 22.1 5.2 28 78-106 71-98 (226)
55 COG3313 Predicted Fe-S protein 23.1 78 0.0017 20.6 2.1 21 83-108 28-48 (74)
56 PRK10455 periplasmic protein; 23.0 1.9E+02 0.004 21.2 4.4 29 87-115 119-147 (161)
57 PRK14296 chaperone protein Dna 22.7 1.8E+02 0.0039 23.9 4.7 41 68-109 23-67 (372)
58 PRK14299 chaperone protein Dna 22.4 2.1E+02 0.0045 22.6 4.9 41 68-109 23-67 (291)
59 PF15076 DUF4543: Domain of un 22.0 54 0.0012 21.1 1.2 21 49-69 25-45 (75)
60 PTZ00037 DnaJ_C chaperone prot 21.8 2.2E+02 0.0047 24.1 5.1 43 67-109 46-88 (421)
61 PHA03335 hypothetical protein; 21.1 49 0.0011 27.4 1.0 41 60-100 258-302 (385)
62 PRK14279 chaperone protein Dna 20.6 1.8E+02 0.0038 24.2 4.3 42 68-110 28-74 (392)
63 PF02026 RyR: RyR domain; Int 20.5 1.2E+02 0.0026 20.2 2.7 20 95-114 61-80 (94)
64 PRK14280 chaperone protein Dna 20.3 2.3E+02 0.0051 23.3 4.9 42 68-109 23-67 (376)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.91 E-value=5.4e-24 Score=144.20 Aligned_cols=78 Identities=32% Similarity=0.464 Sum_probs=70.9
Q ss_pred ccccccccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 41 kk~kk~kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~-s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+-.+++++..+||+.|+||+||||+||+++|..|..+||++. ++.+|+++||++|++||+++|.+|+++|+.|+.+|.
T Consensus 8 ~~~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~ 86 (94)
T PTZ00199 8 VLVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYE 86 (94)
T ss_pred ccccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 345555667899999999999999999999999999999982 289999999999999999999999999999999995
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.83 E-value=2.1e-20 Score=121.54 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=61.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 55 ~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.|+||+||||||++++|..|..+||++ ++.+|+++||++|+.||+++|++|.++|+.++.+|+
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~ 63 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHA 63 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999 899999999999999999999999999999999885
No 3
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.82 E-value=4.1e-20 Score=115.46 Aligned_cols=62 Identities=37% Similarity=0.552 Sum_probs=60.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 56 PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
|++|+|||++|++++|..+..+||++ ++.+|++.||++|++||+++|++|.+.|..++.+|.
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~ 62 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDA-SVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYE 62 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999 899999999999999999999999999999999995
No 4
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.81 E-value=8e-20 Score=117.56 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=60.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 56 PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.|||+||||+||+++|..++.+||++ ++.+|+++||++|+.||+++|++|.++|..++.+|+
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~ 63 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHM 63 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999 899999999999999999999999999999999985
No 5
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.79 E-value=4.8e-19 Score=111.63 Aligned_cols=62 Identities=27% Similarity=0.468 Sum_probs=58.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 56 PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
|+||+|||++||++++..+..+||++ ++.+|+++||.+|++||+++|.+|.+.|..++.+|.
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~-~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~ 62 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDL-SNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYE 62 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTS-THHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhccc-ccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999 899999999999999999999999999999998884
No 6
>smart00398 HMG high mobility group.
Probab=99.79 E-value=7.1e-19 Score=110.28 Aligned_cols=63 Identities=32% Similarity=0.487 Sum_probs=60.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 55 ~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+|++|+|+|++|++++|..+..+||++ ++.+|++.||.+|+.||+++|.+|.+.|..++.+|.
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~ 63 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDL-SNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYE 63 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999 899999999999999999999999999999998884
No 7
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.77 E-value=2.3e-18 Score=106.80 Aligned_cols=62 Identities=35% Similarity=0.537 Sum_probs=60.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 56 PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
|++|+|||++|+++.+..+..+||++ ++.+|++.||.+|+.||+++|.+|.+.|..++.+|.
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~ 62 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYE 62 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999 899999999999999999999999999999998884
No 8
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.76 E-value=8e-19 Score=133.48 Aligned_cols=75 Identities=36% Similarity=0.535 Sum_probs=71.4
Q ss_pred ccccccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 43 ~kk~kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.+...+..+|||.|+||+||||+|++++|+.++.++|.+ +|.+|++++|+.|++|+++|+.+|...|..+..+|.
T Consensus 58 sk~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l-~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq 132 (211)
T COG5648 58 SKRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKL-TFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQ 132 (211)
T ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHH
Confidence 356678889999999999999999999999999999999 899999999999999999999999999999999995
No 9
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.74 E-value=9.4e-18 Score=108.14 Aligned_cols=65 Identities=34% Similarity=0.497 Sum_probs=56.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 53 PNKPKRPPSAFFVFLEEFRKVYKQE-HPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~ik~e-~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
|+.||+|+|||+||+.+++..+... ++.. ++.|+++.||..|++||++||.+|++.|..+..+|-
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~-~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~ 66 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQ-SFREVMKEISERWKSLSEEEKEPYEERAKEDKERYE 66 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-S-SHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988 7777 899999999999999999999999999999999883
No 10
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.71 E-value=4.8e-17 Score=108.96 Aligned_cols=66 Identities=38% Similarity=0.530 Sum_probs=63.4
Q ss_pred CC--CCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 52 DP--NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 52 dp--~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
|| +.|++|+|||++|+++.+..++.+||++ ++.+|++++|++|++|+++++++|+..|..+..+|.
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~-~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~ 84 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGL-SVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYE 84 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 66 5999999999999999999999999999 899999999999999999999999999999999985
No 11
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.60 E-value=1e-15 Score=129.19 Aligned_cols=68 Identities=31% Similarity=0.557 Sum_probs=64.7
Q ss_pred ccccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhcc
Q 033449 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGL 117 (119)
Q Consensus 45 k~kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y 117 (119)
+..++.+|||+|||++||||+|++..|..|+.+ +. ++++|++.+|++|+.|+. |.+|++.|+.|.++|
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi-~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry 592 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GI-SVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRY 592 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--Cc-hHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHH
Confidence 566778999999999999999999999999988 88 899999999999999999 999999999999998
No 12
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.59 E-value=2.1e-15 Score=122.12 Aligned_cols=67 Identities=22% Similarity=0.351 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhc
Q 033449 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLG 116 (119)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~ 116 (119)
........||||||||+|++..|..|..+||.+ .+.||||+||..|+.|+++||.+|+++|+...+.
T Consensus 56 ~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~m-HNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~ 122 (331)
T KOG0527|consen 56 DKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKM-HNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQ 122 (331)
T ss_pred CCCCccccCCCcchhhhhhHHHHHHHHHhCcch-hhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHH
Confidence 445667899999999999999999999999999 9999999999999999999999999999887653
No 13
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.17 E-value=4.2e-11 Score=97.13 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=55.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhh
Q 033449 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLL 115 (119)
Q Consensus 55 ~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~ 115 (119)
..|+|+||||+||.|+|..|..++--. ...+|+++||.+|..||.+|...|.++|.++.+
T Consensus 191 hiKKPLNAFmlyMKEmRa~vvaEctlK-eSAaiNqiLGrRWH~LSrEEQAKYyElArKerq 250 (421)
T KOG3248|consen 191 HIKKPLNAFMLYMKEMRAKVVAECTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQ 250 (421)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Confidence 779999999999999999999998755 678999999999999999999999999988764
No 14
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=99.04 E-value=3.4e-10 Score=91.33 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=64.5
Q ss_pred cCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhcc
Q 033449 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGL 117 (119)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y 117 (119)
...+.|.+|-+|+-+||.|+....++|+..||++ -.-||.++||.+|..|+++||+.|+..|+.+++.|
T Consensus 57 t~pkpPkppekpl~pymrySrkvWd~VkA~nPe~-kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY 125 (410)
T KOG4715|consen 57 TRPKPPKPPEKPLMPYMRYSRKVWDQVKASNPEL-KLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEY 125 (410)
T ss_pred cCCCCCCCCCcccchhhHHhhhhhhhhhccCcch-HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 3446778889999999999999999999999999 79999999999999999999999999999999988
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=98.94 E-value=3.2e-10 Score=95.16 Aligned_cols=61 Identities=23% Similarity=0.405 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHH
Q 033449 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGS 110 (119)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A 110 (119)
.-..++..||||||||.|.++-|..|...+|++ ....|+++||..|+.||-.||++|.+.-
T Consensus 319 ~~ss~PHIKRPMNAFMVWAkDERRKILqA~PDM-HNSnISKILGSRWKaMSN~eKQPYYEEQ 379 (511)
T KOG0528|consen 319 RASSEPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMSNTEKQPYYEEQ 379 (511)
T ss_pred cCCCCccccCCcchhhcccchhhhhhhhcCccc-cccchhHHhcccccccccccccchHHHH
Confidence 334556889999999999999999999999999 8999999999999999999999998653
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.56 E-value=4.8e-08 Score=84.79 Aligned_cols=68 Identities=28% Similarity=0.385 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCChhHHHHHHHH--HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhcc
Q 033449 49 AKKDPNKPKRPPSAFFVFLEEFR--KVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGL 117 (119)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e~R--~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y 117 (119)
.+.|....++|||+|++|++.+| ..+...||+. .+.-|+++||+.|-.|.++||+.|.++|.+.....
T Consensus 175 nkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~-DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ah 244 (683)
T KOG2746|consen 175 NKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQ-DNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAH 244 (683)
T ss_pred CcCcchhhhhhhHHHHHHHhhcCCccchhccCccc-cchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHH
Confidence 34556688999999999999999 8999999999 79999999999999999999999999998876543
No 17
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=97.80 E-value=9.8e-05 Score=48.82 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=50.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhcc
Q 033449 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGL 117 (119)
Q Consensus 55 ~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y 117 (119)
.|-.|-++--+|.++....+...+++- ...+ .+.+...|++|++.+|.+|+..|..|..+|
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~d-r~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrY 63 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRND-RKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRY 63 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTST-HHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHh-HHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 477788999999999999999999987 5655 459999999999999999999999988877
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.46 E-value=0.00025 Score=53.31 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=42.2
Q ss_pred CChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHH
Q 033449 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFL 112 (119)
Q Consensus 60 ~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~ 112 (119)
-++|+-|+.+++.. |.+| +..|+....+..|..||+++|..|..++..
T Consensus 83 nnaYLNFLReFRrk----h~~L-~p~dlI~~AAraW~rLSe~eK~rYrr~~~~ 130 (183)
T PF06382_consen 83 NNAYLNFLREFRRK----HCGL-SPQDLIQRAARAWCRLSEAEKNRYRRMAPS 130 (183)
T ss_pred chHHHHHHHHHHHH----ccCC-CHHHHHHHHHHHHHhCCHHHHHHHHhhcch
Confidence 46899999998774 5699 899999999999999999999999987543
No 19
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.08 E-value=0.00074 Score=41.80 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 033449 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100 (119)
Q Consensus 60 ~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~ 100 (119)
++.|-+|.+..|+.+...||++ ..+.|..+++.+|+.-++
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~-~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKA-PMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-cHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999 899999999999987543
No 20
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.05 E-value=0.0016 Score=48.67 Aligned_cols=48 Identities=29% Similarity=0.508 Sum_probs=42.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 033449 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99 (119)
Q Consensus 51 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls 99 (119)
+.|.+-.|-+|||..|+++.-..|+..+|++ +..|.-...+..|...+
T Consensus 117 kPPEKRqR~psaYn~f~k~ei~rik~~~p~i-shkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 117 KPPEKRQRVPSAYNRFMKEEIQRIKAENPDI-SHKEAFSAAAKNWAHFP 164 (170)
T ss_pred CCccccCCCchhHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhCc
Confidence 3444556778999999999999999999999 99999999999998765
No 21
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=96.92 E-value=0.00068 Score=52.16 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=60.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhcccC
Q 033449 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLLI 119 (119)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~i 119 (119)
...+|..|..+|+-+-...|+.+...+|+. +..++++++|..|++|++.-+.+|.+.|..++..|.+
T Consensus 140 ~k~~~~~~~~~~~e~~~~~r~~~~~~~~~~-~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~ 206 (211)
T COG5648 140 KKLPNKAPIGPFIENEPKIRPKVEGPSPDK-ALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDS 206 (211)
T ss_pred cccCCCCCCchhhhccHHhccccCCCCcch-hhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhh
Confidence 344778888889999999999999999998 8899999999999999999999999999999998864
No 22
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=94.93 E-value=0.086 Score=40.36 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHH
Q 033449 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGS 110 (119)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A 110 (119)
.......++||+|+||.|+.=+- ...|+. ...++|..|+..|..=+- +..|.-+|
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsyy~----~~~~~~-~Qk~~S~~l~~lW~~dp~--k~~W~l~a 91 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSYYS----PIFPPL-PQKELSGILTKLWEKDPF--KNKWSLMA 91 (201)
T ss_pred ccccccccccchhHHHHHHHHHH----hhcCCc-CHHHHHHHHHHHHhCCcc--HhHHHHHh
Confidence 34455678999999999976554 556788 788999999999987433 45555444
No 23
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=93.72 E-value=0.098 Score=37.21 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=39.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 033449 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101 (119)
Q Consensus 55 ~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~ 101 (119)
+-+|--.||.-|...+-+.++.+||+| -.+++-.+|-..|...|++
T Consensus 72 PErR~KAAy~afeE~~Lp~lK~E~PgL-rlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 72 PERRMKAAYKAFEERRLPELKEENPGL-RLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred cchhHHHHHHHHHHHHhHHHHhhCCCc-hHHHHHHHHHHHHhcCCCC
Confidence 334445789999999999999999999 8999999999999887753
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=84.95 E-value=1.4 Score=33.24 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCCCHHHHHH-HHHHHhhcCCHHHhHhHHHHHHHH
Q 033449 80 NVKAVSAVGK-AGGEKWKSLTDAVSSKISTGSFLN 113 (119)
Q Consensus 80 ~~~s~~eisk-~lge~Wk~Ls~~EK~~Y~~~A~~~ 113 (119)
.. ++..|++ .||..|+.+|+++++.|.+.-...
T Consensus 63 ~~-Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~ 96 (198)
T TIGR03481 63 AF-DLPAMARLTLGSSWTSLSPEQRRRFIGAFREL 96 (198)
T ss_pred hC-CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHH
Confidence 45 6788877 789999999999999999876553
No 25
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=84.82 E-value=0.8 Score=33.21 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=27.7
Q ss_pred CCCCCHHHHHH-HHHHHhhcCCHHHhHhHHHHHHHHhhc
Q 033449 79 PNVKAVSAVGK-AGGEKWKSLTDAVSSKISTGSFLNLLG 116 (119)
Q Consensus 79 P~~~s~~eisk-~lge~Wk~Ls~~EK~~Y~~~A~~~~~~ 116 (119)
|.. .+..|++ .||..|+.||+++++.|.+.....+.+
T Consensus 36 ~~~-D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~ 73 (170)
T PF05494_consen 36 PYF-DFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVR 73 (170)
T ss_dssp GGB--HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHH
T ss_pred HhC-CHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHH
Confidence 566 6777877 678899999999999999876655443
No 26
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=83.49 E-value=2.1 Score=32.64 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=28.6
Q ss_pred CCCCCHHHHHH-HHHHHhhcCCHHHhHhHHHHHHHHh
Q 033449 79 PNVKAVSAVGK-AGGEKWKSLTDAVSSKISTGSFLNL 114 (119)
Q Consensus 79 P~~~s~~eisk-~lge~Wk~Ls~~EK~~Y~~~A~~~~ 114 (119)
|.. ++..+++ .||..|+.+|+++++.|.+.-...+
T Consensus 66 p~~-Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~L 101 (211)
T PRK15117 66 PYV-QVKYAGALVLGRYYKDATPAQREAYFAAFREYL 101 (211)
T ss_pred ccC-CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 667 6888877 7899999999999999997754443
No 27
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.62 E-value=1.7 Score=33.44 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=38.5
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 033449 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101 (119)
Q Consensus 57 KRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~ 101 (119)
+|=..||.-|-...-+.++.+||++ ..++.-.+|-..|..-|++
T Consensus 166 kRmrAA~~afEe~~LPrLK~e~P~l-rlsQ~Kqll~Kew~KsPDN 209 (221)
T KOG3223|consen 166 KRMRAAFKAFEEARLPRLKKENPGL-RLSQYKQLLKKEWQKSPDN 209 (221)
T ss_pred HHHHHHHHHHHHhhchhhhhcCCCc-cHHHHHHHHHHHHhhCCCC
Confidence 3445678899999999999999999 8999999999999988874
No 28
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=62.41 E-value=24 Score=29.08 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhh
Q 033449 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLL 115 (119)
Q Consensus 61 say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~ 115 (119)
.||..|+--.--.+....|.+ +..|-..+.-..|...|.-+|-.|+++|++=|+
T Consensus 230 EAlSCFLIpvLrsLar~kPtM-tlEeGl~ra~qEW~~~SnfdRmifyemaekFmE 283 (328)
T PF12881_consen 230 EALSCFLIPVLRSLARLKPTM-TLEEGLWRAVQEWQHTSNFDRMIFYEMAEKFME 283 (328)
T ss_pred hhhhhhHHHHHHHHHhcCCCc-cHHHHHHHHHHHhhccccccHHHHHHHHHHHcc
Confidence 344444444444445566888 787877777889999999999999999987553
No 29
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=61.93 E-value=17 Score=21.57 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHhHhHHHHHHH
Q 033449 83 AVSAVGKAGGEKWKSLTDAVSSKISTGSFL 112 (119)
Q Consensus 83 s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~ 112 (119)
+..||.. |..|++++|.........
T Consensus 23 T~dEI~~-----W~~~s~~er~~i~~~l~~ 47 (51)
T PF06945_consen 23 TLDEIRD-----WKSMSDDERRAILARLRA 47 (51)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHHHHHH
Confidence 4667766 999999999877665443
No 30
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=57.39 E-value=21 Score=24.36 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhcCCHHHhHhHHHHH
Q 033449 86 AVGKAGGEKWKSLTDAVSSKISTGS 110 (119)
Q Consensus 86 eisk~lge~Wk~Ls~~EK~~Y~~~A 110 (119)
++..-+...|+.|++..+..|...|
T Consensus 11 ~~L~pl~~~W~~l~~~qr~k~l~~a 35 (107)
T PF11304_consen 11 QALAPLAERWNSLPPEQRRKWLQIA 35 (107)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555556666555555555544
No 31
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=47.26 E-value=56 Score=24.86 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHh
Q 033449 62 AFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSK 105 (119)
Q Consensus 62 ay~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~ 105 (119)
+-+.|+..+.+.|...| +...+..+|..-|..||+.-++-
T Consensus 131 acLVFL~~~f~~F~~~~----deeK~v~Il~KTw~KMS~~g~~~ 170 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKH----DEEKIVDILRKTWRKMSERGHEA 170 (185)
T ss_pred HHHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHHCCHHHHHH
Confidence 47889999999998887 24578899999999999987653
No 32
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=46.73 E-value=18 Score=20.67 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=17.0
Q ss_pred HHHHHHHHH-HHhhcCCHHHhHhHHHHHHH
Q 033449 84 VSAVGKAGG-EKWKSLTDAVSSKISTGSFL 112 (119)
Q Consensus 84 ~~eisk~lg-e~Wk~Ls~~EK~~Y~~~A~~ 112 (119)
|.||+--++ +.|..|.+.+|.-|.+.-..
T Consensus 3 f~Dvav~fs~eEW~~L~~~Qk~ly~dvm~E 32 (41)
T PF01352_consen 3 FEDVAVYFSQEEWELLDPAQKNLYRDVMLE 32 (41)
T ss_dssp ----TT---HHHHHTS-HHHHHHHHHHHHH
T ss_pred EEEEEEEcChhhcccccceecccchhHHHH
Confidence 455555454 56999999999999887544
No 33
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=41.06 E-value=51 Score=24.35 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCHHHhHhHHHHHHHHhhc
Q 033449 87 VGKAGGEKWKSLTDAVSSKISTGSFLNLLG 116 (119)
Q Consensus 87 isk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~ 116 (119)
..+..-++++.||+++|..|.+..+.-+.+
T Consensus 119 ~~~~~~qmy~lLTPEQra~l~~~~e~r~~~ 148 (162)
T PRK12751 119 MAKVRNQMYNLLTPEQKEALNKKHQERIEK 148 (162)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345567888999999999999988766554
No 34
>PRK10236 hypothetical protein; Provisional
Probab=40.17 E-value=34 Score=26.97 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCCHHHhHhHHHHH
Q 033449 87 VGKAGGEKWKSLTDAVSSKISTGS 110 (119)
Q Consensus 87 isk~lge~Wk~Ls~~EK~~Y~~~A 110 (119)
+.++++..|..||++|++.+.+.-
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l 141 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAV 141 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHH
Confidence 578999999999999999887653
No 35
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=38.16 E-value=59 Score=24.29 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCHHHhHhHHHHHHHHhhcc
Q 033449 86 AVGKAGGEKWKSLTDAVSSKISTGSFLNLLGL 117 (119)
Q Consensus 86 eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y 117 (119)
+..++-..+++-|+|++|..|.+....-+..+
T Consensus 112 em~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~ 143 (166)
T PRK10363 112 EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQL 143 (166)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 35666788999999999999999888776654
No 36
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=37.54 E-value=23 Score=23.33 Aligned_cols=16 Identities=6% Similarity=0.221 Sum_probs=13.8
Q ss_pred HhhcCCHHHhHhHHHH
Q 033449 94 KWKSLTDAVSSKISTG 109 (119)
Q Consensus 94 ~Wk~Ls~~EK~~Y~~~ 109 (119)
-|+.||++||..|...
T Consensus 25 Gyntms~eEk~~~D~~ 40 (97)
T PF12650_consen 25 GYNTMSKEEKEKYDKK 40 (97)
T ss_pred hcccCCHHHHHHhhHH
Confidence 3899999999999754
No 37
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=36.75 E-value=20 Score=23.07 Aligned_cols=21 Identities=14% Similarity=0.504 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCH
Q 033449 79 PNVKAVSAVGKAGGEKWKSLTD 100 (119)
Q Consensus 79 P~~~s~~eisk~lge~Wk~Ls~ 100 (119)
|++ .+..|+..||..|..|-.
T Consensus 3 ~~~-~l~~ia~~lG~dW~~LAr 23 (84)
T cd08317 3 ADI-RLADISNLLGSDWPQLAR 23 (84)
T ss_pred ccc-hHHHHHHHHhhHHHHHHH
Confidence 455 688999999999987753
No 38
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=36.27 E-value=77 Score=20.35 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC----HHHhHhHHHHHHHHhhcc
Q 033449 63 FFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT----DAVSSKISTGSFLNLLGL 117 (119)
Q Consensus 63 y~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls----~~EK~~Y~~~A~~~~~~Y 117 (119)
|-||.+.....+....|+. +.-+.+.--+.|+.|. ++-+..|.++....+..|
T Consensus 30 YalyKQAt~Gd~~~~~P~~--~d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~~~~~ 86 (87)
T PF00887_consen 30 YALYKQATHGDCDTPRPGF--FDIEGRAKWDAWKALKGMSKEEAMREYIELVEELIPKY 86 (87)
T ss_dssp HHHHHHHHTSS--S-CTTT--TCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCcc--hhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 7788887777776677776 3445555567797765 556777888887776655
No 39
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=34.45 E-value=88 Score=25.80 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhh
Q 033449 83 AVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLL 115 (119)
Q Consensus 83 s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~ 115 (119)
+...+.+.+.+.|..||++.++.|-+.+..+..
T Consensus 217 ~~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~~ 249 (322)
T KOG1610|consen 217 NPEKLEKRMKEIWERLPQETKDEYGEDYFEDYK 249 (322)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999877765543
No 40
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.16 E-value=40 Score=25.96 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCCHHHhHhHHHHHHHHh
Q 033449 88 GKAGGEKWKSLTDAVSSKISTGSFLNL 114 (119)
Q Consensus 88 sk~lge~Wk~Ls~~EK~~Y~~~A~~~~ 114 (119)
...||.-|+.+|+++++.|.+.....+
T Consensus 77 ~~vLGk~~k~aspeQ~~~F~~aF~~yl 103 (202)
T COG2854 77 KLVLGKYYKTASPEQRQAFFKAFRTYL 103 (202)
T ss_pred HHHhccccccCCHHHHHHHHHHHHHHH
Confidence 347899999999999999997755444
No 41
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=31.34 E-value=97 Score=21.51 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcCCHHHhHhHHHHHHH
Q 033449 84 VSAVGKAGGEKWKSLTDAVSSKISTGSFL 112 (119)
Q Consensus 84 ~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~ 112 (119)
+.-+++.+++.++.||.+-|+.|.++...
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~ 73 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLL 73 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 55688889999999999999999998753
No 42
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=30.52 E-value=55 Score=18.28 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=16.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcC
Q 033449 75 KQEHPNVKAVSAVGKAGGEKWKSL 98 (119)
Q Consensus 75 k~e~P~~~s~~eisk~lge~Wk~L 98 (119)
..++|.+ +..+|+..+|-.+..+
T Consensus 12 l~~~~~~-t~~ela~~~~is~~tv 34 (48)
T PF13412_consen 12 LRENPRI-TQKELAEKLGISRSTV 34 (48)
T ss_dssp HHHCTTS--HHHHHHHHTS-HHHH
T ss_pred HHHcCCC-CHHHHHHHhCCCHHHH
Confidence 4568999 8999999998665544
No 43
>PF15581 Imm35: Immunity protein 35
Probab=29.70 E-value=1.1e+02 Score=20.67 Aligned_cols=30 Identities=7% Similarity=0.097 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHhhcCCHHHhHhHHHHHHH
Q 033449 83 AVSAVGKAGGEKWKSLTDAVSSKISTGSFL 112 (119)
Q Consensus 83 s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~ 112 (119)
+..-+..++.+.|+.|+.++=..-.+.++.
T Consensus 31 ~i~~l~~lIe~eWRGl~~~qV~~kl~ava~ 60 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQVLYKLEAVAA 60 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 355678899999999999887766655443
No 44
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=28.43 E-value=68 Score=24.10 Aligned_cols=40 Identities=5% Similarity=0.130 Sum_probs=28.6
Q ss_pred ChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHH
Q 033449 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTG 109 (119)
Q Consensus 61 say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~ 109 (119)
.-|++|++..|..- + +.+| .-|+..|..|++-|+.--.-.
T Consensus 4 ~~~~~~~~~~~~~~------~-~~~~--~~~~~~W~~ls~REq~ll~~~ 43 (178)
T PRK09731 4 DKFIHYFQQWRERQ------L-SRGE--HWLAQHLAGRSPREKGMLLAA 43 (178)
T ss_pred HHHHHHHHHHHHHH------h-cchh--hHHHHHHccCCHHHHHHHHHH
Confidence 35999999988863 3 3333 457889999999998764433
No 45
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=28.12 E-value=84 Score=19.45 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=15.2
Q ss_pred HHHHhhcCCHHHhHhHHHHH
Q 033449 91 GGEKWKSLTDAVSSKISTGS 110 (119)
Q Consensus 91 lge~Wk~Ls~~EK~~Y~~~A 110 (119)
-+..|+.|++.+|..+..--
T Consensus 13 a~~ly~~l~~~er~~lv~ni 32 (68)
T PF06628_consen 13 ARDLYRVLSDEERERLVENI 32 (68)
T ss_dssp HHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHH
Confidence 46779999999988876543
No 46
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=26.82 E-value=1.2e+02 Score=22.48 Aligned_cols=30 Identities=10% Similarity=-0.094 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCHHHhHhHHHHHHHHhhcc
Q 033449 88 GKAGGEKWKSLTDAVSSKISTGSFLNLLGL 117 (119)
Q Consensus 88 sk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y 117 (119)
.+..-+.+..||+++|..|.++...-+..+
T Consensus 127 ~~~~~~~~~vLTpEQRak~~e~~~~r~~~~ 156 (170)
T PRK12750 127 LEKRHQMLSILTPEQKAKFQELQQERMQEC 156 (170)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 444566899999999999999877665543
No 47
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=25.98 E-value=1.3e+02 Score=18.92 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhcCCHHHhHhHHHH
Q 033449 84 VSAVGKAGGEKWKSLTDAVSSKISTG 109 (119)
Q Consensus 84 ~~eisk~lge~Wk~Ls~~EK~~Y~~~ 109 (119)
...........+..|+++++..|..+
T Consensus 74 ~~~~~~~~~~~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 74 MEERAKAQHALYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 34566778899999999999998764
No 48
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=24.91 E-value=2e+02 Score=18.46 Aligned_cols=33 Identities=6% Similarity=0.225 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 033449 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEK 94 (119)
Q Consensus 61 say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~ 94 (119)
+.|.-|-..-.+.++...|+. +..+|..++..+
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~a-t~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDA-TPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS--HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHH
Confidence 457788888889999999999 888888877553
No 49
>PRK14291 chaperone protein DnaJ; Provisional
Probab=24.74 E-value=1.6e+02 Score=24.23 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHhHhHHHH
Q 033449 68 EEFRKVYKQEHPNVKA----VSAVGKAGGEKWKSLTDAVSSKISTG 109 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~s----~~eisk~lge~Wk~Ls~~EK~~Y~~~ 109 (119)
+.+|...+.-||+. + ..+.-+.|.+.|..|++.++..-+|.
T Consensus 22 ~ayr~la~~~HPD~-~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~ 66 (382)
T PRK14291 22 KAYRRLARKYHPDF-NKNPEAEEKFKEINEAYQVLSDPEKRKLYDQ 66 (382)
T ss_pred HHHHHHHHHHCCCC-CCCccHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 45666666778887 4 35677899999999998886654443
No 50
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=24.68 E-value=1.9e+02 Score=22.94 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCCHHHhHhHHHH
Q 033449 68 EEFRKVYKQEHPNVK---AVSAVGKAGGEKWKSLTDAVSSKISTG 109 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~---s~~eisk~lge~Wk~Ls~~EK~~Y~~~ 109 (119)
+.+|.....-||+.. ...+..+.+.+.|..|++.++..-.+.
T Consensus 23 ~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~ 67 (306)
T PRK10266 23 TAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 67 (306)
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 456666667788861 256788899999999997776554443
No 51
>PF13945 NST1: Salt tolerance down-regulator
Probab=24.62 E-value=1.2e+02 Score=23.07 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHhhcCCHHHhHhHHHHHHHH
Q 033449 83 AVSAVGKAGGEKWKSLTDAVSSKISTGSFLN 113 (119)
Q Consensus 83 s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~ 113 (119)
+..+....|-+.|-+|+++||.-...+-..+
T Consensus 99 Ss~eEre~LkeFW~SL~eeERr~LVkIEKe~ 129 (190)
T PF13945_consen 99 SSQEEREKLKEFWESLSEEERRSLVKIEKEA 129 (190)
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHhhHHH
Confidence 3446677899999999999999887654443
No 52
>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.25 E-value=1.3e+02 Score=23.31 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhcccC
Q 033449 79 PNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLLI 119 (119)
Q Consensus 79 P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~i 119 (119)
-++ ++.-.-+..|..|+.++.++.+...-.+.+.+....|
T Consensus 35 gg~-s~anflr~~G~lyk~il~d~~~~Lk~k~~k~~~tt~I 74 (211)
T COG4735 35 GGL-SAANFLRDLGQLYKKILCDEKDKLKVKVQKELGTTEI 74 (211)
T ss_pred ccH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhccccc
Confidence 455 7777888999999999999999988888887776554
No 53
>PRK14283 chaperone protein DnaJ; Provisional
Probab=24.00 E-value=1.9e+02 Score=23.78 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHhHhHHHH
Q 033449 67 LEEFRKVYKQEHPNVKA----VSAVGKAGGEKWKSLTDAVSSKISTG 109 (119)
Q Consensus 67 ~~e~R~~ik~e~P~~~s----~~eisk~lge~Wk~Ls~~EK~~Y~~~ 109 (119)
.+.+|.....-||+. + ..+..+.|.+.|..|++.++...+|.
T Consensus 23 k~ayr~la~~~HPD~-~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 23 KKAYRKLARKYHPDV-SEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred HHHHHHHHHHHCcCC-CCCccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 345666667778887 4 45678889999999999887665554
No 54
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=23.20 E-value=2.4e+02 Score=22.14 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHhHhH
Q 033449 78 HPNVKAVSAVGKAGGEKWKSLTDAVSSKI 106 (119)
Q Consensus 78 ~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y 106 (119)
+..+ +|.-+.+.+.+-...||++||..-
T Consensus 71 na~~-sf~lll~Al~Et~~~Lp~~qK~~i 98 (226)
T PHA02662 71 DAAD-ALALASAALAETLAELPRADRLAV 98 (226)
T ss_pred CHHH-HHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455 688899999999999999999864
No 55
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=23.05 E-value=78 Score=20.63 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHhhcCCHHHhHhHHH
Q 033449 83 AVSAVGKAGGEKWKSLTDAVSSKIST 108 (119)
Q Consensus 83 s~~eisk~lge~Wk~Ls~~EK~~Y~~ 108 (119)
+..||.. |..||++||.--..
T Consensus 28 t~~Ei~~-----W~~msd~Er~aVl~ 48 (74)
T COG3313 28 TRDEIFN-----WSSMSDDERRAVLR 48 (74)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHH
Confidence 4556766 99999999876443
No 56
>PRK10455 periplasmic protein; Reviewed
Probab=23.05 E-value=1.9e+02 Score=21.20 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCCHHHhHhHHHHHHHHhh
Q 033449 87 VGKAGGEKWKSLTDAVSSKISTGSFLNLL 115 (119)
Q Consensus 87 isk~lge~Wk~Ls~~EK~~Y~~~A~~~~~ 115 (119)
..+....++..||+++|..|.+..+.-+.
T Consensus 119 ~~~~~~qiy~vLTPEQr~q~~~~~ekr~~ 147 (161)
T PRK10455 119 HMETQNKIYNVLTPEQKKQFNANFEKRLT 147 (161)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44555678999999999999988765543
No 57
>PRK14296 chaperone protein DnaJ; Provisional
Probab=22.71 E-value=1.8e+02 Score=23.92 Aligned_cols=41 Identities=24% Similarity=0.204 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHhHhHHHH
Q 033449 68 EEFRKVYKQEHPNVKA----VSAVGKAGGEKWKSLTDAVSSKISTG 109 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~s----~~eisk~lge~Wk~Ls~~EK~~Y~~~ 109 (119)
..+|...+.-||+. + ..+.-+.|++.|..|++.+|..-+|.
T Consensus 23 ~ayrkla~~~HPD~-n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 23 QAYRKLAKQYHPDL-NKSPDAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred HHHHHHHHHHCcCC-CCCchHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 34555556678876 4 44667789999999998887655544
No 58
>PRK14299 chaperone protein DnaJ; Provisional
Probab=22.37 E-value=2.1e+02 Score=22.62 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHhHhHHHH
Q 033449 68 EEFRKVYKQEHPNVKA----VSAVGKAGGEKWKSLTDAVSSKISTG 109 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~s----~~eisk~lge~Wk~Ls~~EK~~Y~~~ 109 (119)
+.+|.....-||+. + ..+..+.|.+.|..|++.++..-.+.
T Consensus 23 ~ayr~la~~~HPD~-~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~ 67 (291)
T PRK14299 23 KAFKKLARKYHPDV-NKSPGAEEKFKEINEAYTVLSDPEKRRIYDT 67 (291)
T ss_pred HHHHHHHHHHCcCC-CCChhHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 45566666678877 3 45677889999999998876654443
No 59
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=21.97 E-value=54 Score=21.12 Aligned_cols=21 Identities=19% Similarity=0.545 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCChhHHHHHH
Q 033449 49 AKKDPNKPKRPPSAFFVFLEE 69 (119)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e 69 (119)
+...|+.|.-||.-||++++.
T Consensus 25 r~~K~GfpdepmrE~ml~l~~ 45 (75)
T PF15076_consen 25 RPRKPGFPDEPMREYMLHLQA 45 (75)
T ss_pred CCCCCCCCcchHHHHHHHHHH
Confidence 345578999999999999863
No 60
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=21.81 E-value=2.2e+02 Score=24.08 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHH
Q 033449 67 LEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTG 109 (119)
Q Consensus 67 ~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~ 109 (119)
-+.+|...+.-||+.....+.-+.|.+.|..|++.++...+|.
T Consensus 46 KkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 46 KKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 4567777778899982234778899999999998887665554
No 61
>PHA03335 hypothetical protein; Provisional
Probab=21.06 E-value=49 Score=27.45 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=30.8
Q ss_pred CChhHHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCCH
Q 033449 60 PSAFFVFLEEFRKVYKQEHPNVK----AVSAVGKAGGEKWKSLTD 100 (119)
Q Consensus 60 ~say~lF~~e~R~~ik~e~P~~~----s~~eisk~lge~Wk~Ls~ 100 (119)
+|||+-|+--++.++....+.+. +..++--.|+..|++|+-
T Consensus 258 LNayiNWf~fn~qQfv~~g~~~ps~~~~~~~~DlRCS~C~r~~~~ 302 (385)
T PHA03335 258 LNAYINWFAFNRQQFVNPGITLPSSELSQEALDLRCSGCWRLLSI 302 (385)
T ss_pred HHHHHhHHHhhhHHhhcCCCCCCCCchhhhcccchhHHHHHHHHH
Confidence 68899999999999988776652 233455678999998863
No 62
>PRK14279 chaperone protein DnaJ; Provisional
Probab=20.63 E-value=1.8e+02 Score=24.20 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCCHHHhHhHHHHH
Q 033449 68 EEFRKVYKQEHPNVKA-----VSAVGKAGGEKWKSLTDAVSSKISTGS 110 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~s-----~~eisk~lge~Wk~Ls~~EK~~Y~~~A 110 (119)
+.+|...+.-||+. + ..+.-+.|.+.|..|++.+|..-+|.+
T Consensus 28 ~ayr~la~~~HPD~-~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~ 74 (392)
T PRK14279 28 KAYRKLARELHPDA-NPGDPAAEERFKAVSEAHDVLSDPAKRKEYDET 74 (392)
T ss_pred HHHHHHHHHHCcCC-CCCChHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence 45666667778887 3 346777899999999998877655554
No 63
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=20.47 E-value=1.2e+02 Score=20.20 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=16.3
Q ss_pred hhcCCHHHhHhHHHHHHHHh
Q 033449 95 WKSLTDAVSSKISTGSFLNL 114 (119)
Q Consensus 95 Wk~Ls~~EK~~Y~~~A~~~~ 114 (119)
|..||+.+|..+.+.+..-+
T Consensus 61 y~~L~e~eK~~dr~~~~e~l 80 (94)
T PF02026_consen 61 YDELSEEEKEKDRDMVRETL 80 (94)
T ss_dssp GGGS-HHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHhHHHHHHHH
Confidence 99999999999998876543
No 64
>PRK14280 chaperone protein DnaJ; Provisional
Probab=20.32 E-value=2.3e+02 Score=23.25 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCCHHHhHhHHHH
Q 033449 68 EEFRKVYKQEHPNVK---AVSAVGKAGGEKWKSLTDAVSSKISTG 109 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~---s~~eisk~lge~Wk~Ls~~EK~~Y~~~ 109 (119)
+.+|...+.-||+.. ...+..+.|.+.|..|++.++..-+|.
T Consensus 23 ~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 67 (376)
T PRK14280 23 KAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQ 67 (376)
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHh
Confidence 455666666778761 245778899999999998776554444
Done!