Query 033449
Match_columns 119
No_of_seqs 167 out of 1038
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 23:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgf_A Upstream binding factor 99.9 7.2E-25 2.5E-29 145.8 9.3 75 43-118 8-82 (90)
2 2eqz_A High mobility group pro 99.9 5.7E-24 1.9E-28 140.1 9.7 74 45-118 5-79 (86)
3 2co9_A Thymus high mobility gr 99.9 6E-24 2E-28 144.3 9.4 74 44-118 6-79 (102)
4 1k99_A Upstream binding factor 99.9 3.9E-24 1.3E-28 144.8 6.9 71 47-118 2-72 (99)
5 1hme_A High mobility group pro 99.9 1E-23 3.4E-28 135.8 7.7 68 50-118 1-68 (77)
6 2e6o_A HMG box-containing prot 99.9 2.2E-23 7.6E-28 137.6 8.4 71 47-118 9-79 (87)
7 1hry_A Human SRY; DNA, DNA-bin 99.9 3.3E-23 1.1E-27 133.0 7.6 66 52-118 1-66 (76)
8 1cg7_A Protein (NON histone pr 99.9 4.6E-24 1.6E-28 142.6 3.4 73 45-118 10-82 (93)
9 2crj_A SWI/SNF-related matrix- 99.9 5.1E-23 1.7E-27 137.1 8.4 68 50-118 2-69 (92)
10 2lhj_A High mobility group pro 99.9 3.6E-24 1.2E-28 144.0 2.0 75 43-118 10-86 (97)
11 1aab_A High mobility group pro 99.9 2.6E-23 8.8E-28 135.8 5.0 68 50-118 2-71 (83)
12 1wz6_A HMG-box transcription f 99.9 1.7E-22 5.8E-27 131.7 8.5 67 51-118 3-69 (82)
13 2cs1_A PMS1 protein homolog 1; 99.9 1.4E-22 4.8E-27 135.0 7.9 67 51-118 3-69 (92)
14 1j46_A SRY, sex-determining re 99.9 3.4E-22 1.2E-26 131.3 8.8 66 52-118 1-66 (85)
15 2d7l_A WD repeat and HMG-box D 99.9 1.9E-22 6.6E-27 132.5 6.7 62 52-114 2-64 (81)
16 1wxl_A Single-strand recogniti 99.9 5.5E-22 1.9E-26 126.8 7.7 63 53-118 1-63 (73)
17 4a3n_A Transcription factor SO 99.9 5.9E-22 2E-26 125.2 7.3 64 54-118 1-64 (71)
18 3f27_D Transcription factor SO 99.9 7.3E-22 2.5E-26 128.6 7.9 66 52-118 3-68 (83)
19 3nm9_A HMG-D, high mobility gr 99.9 5.8E-22 2E-26 126.7 7.3 63 53-118 1-63 (73)
20 1ckt_A High mobility group 1 p 99.9 6.4E-22 2.2E-26 125.3 6.7 64 55-118 1-65 (71)
21 4euw_A Transcription factor SO 99.9 1.3E-21 4.4E-26 133.8 8.6 70 48-118 22-91 (106)
22 2gzk_A Sex-determining region 99.9 1.4E-21 4.8E-26 140.7 9.2 72 46-118 79-150 (159)
23 1gt0_D Transcription factor SO 99.9 1.3E-21 4.6E-26 126.7 8.2 64 54-118 1-64 (80)
24 2lef_A LEF-1 HMG, protein (lym 99.9 1.7E-21 5.7E-26 128.1 8.3 64 54-118 1-64 (86)
25 3u2b_C Transcription factor SO 99.9 1.4E-21 4.8E-26 126.1 7.6 64 54-118 1-64 (79)
26 1i11_A Transcription factor SO 99.8 1.5E-21 5.2E-26 126.9 7.1 65 53-118 2-66 (81)
27 2yrq_A High mobility group pro 99.8 8.3E-21 2.8E-25 138.6 8.4 71 47-118 93-163 (173)
28 2yrq_A High mobility group pro 99.8 1.5E-20 5E-25 137.3 9.5 73 45-118 5-79 (173)
29 2yuk_A Myeloid/lymphoid or mix 99.8 1.5E-22 5.2E-27 135.7 -1.5 68 47-119 14-83 (90)
30 1v64_A Nucleolar transcription 99.8 9.5E-21 3.2E-25 130.1 7.4 68 46-118 7-75 (108)
31 2cto_A Novel protein; high mob 99.8 1.5E-20 5.1E-25 126.6 5.4 66 50-118 5-73 (93)
32 3fgh_A Transcription factor A, 99.8 8.1E-20 2.8E-24 114.8 7.3 60 54-118 1-60 (67)
33 1l8y_A Upstream binding factor 99.8 1E-19 3.6E-24 122.1 7.2 63 54-118 3-65 (91)
34 1v63_A Nucleolar transcription 99.8 3.8E-19 1.3E-23 120.7 8.0 65 51-118 4-68 (101)
35 3tmm_A Transcription factor A, 99.8 4.3E-19 1.5E-23 136.1 6.3 69 49-118 35-103 (238)
36 3tq6_A Transcription factor A, 99.8 6.2E-19 2.1E-23 133.4 6.9 66 52-118 6-71 (214)
37 2gzk_A Sex-determining region 99.7 2.3E-17 7.8E-22 118.6 8.4 65 53-118 2-66 (159)
38 3tq6_A Transcription factor A, 99.7 1.8E-18 6.2E-23 130.8 1.9 67 47-118 106-172 (214)
39 3tmm_A Transcription factor A, 99.7 3.8E-18 1.3E-22 130.8 0.6 67 47-118 138-204 (238)
40 2qgu_A Probable signal peptide 76.9 1.6 5.4E-05 32.1 2.7 36 79-115 70-106 (211)
41 1j1d_B Troponin T, TNT; THIN f 43.3 25 0.00087 23.3 3.5 49 66-117 29-77 (106)
42 2yua_A Williams-beuren syndrom 35.3 70 0.0024 20.0 4.7 41 67-108 35-80 (99)
43 2o37_A Protein SIS1; HSP40, J- 29.6 88 0.003 19.2 4.4 42 67-108 26-68 (92)
44 3o39_A Periplasmic protein rel 28.7 77 0.0026 20.8 4.1 26 87-112 80-105 (108)
45 2och_A Hypothetical protein DN 27.8 92 0.0032 18.1 4.0 37 68-105 27-65 (73)
46 3itf_A Periplasmic adaptor pro 26.7 92 0.0031 21.5 4.3 31 87-117 108-138 (145)
47 2dn9_A DNAJ homolog subfamily 24.8 82 0.0028 18.6 3.4 39 67-105 25-67 (79)
48 1hdj_A Human HSP40, HDJ-1; mol 24.3 1.1E+02 0.0039 17.8 5.0 40 68-107 22-64 (77)
49 2ctw_A DNAJ homolog subfamily 22.7 1.2E+02 0.0041 19.3 4.1 40 68-108 36-80 (109)
50 2ctp_A DNAJ homolog subfamily 20.7 1.3E+02 0.0043 17.7 3.7 38 68-105 26-66 (78)
51 2cug_A Mkiaa0962 protein; DNAJ 20.1 1.4E+02 0.0048 18.0 3.9 40 68-107 36-79 (88)
No 1
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=7.2e-25 Score=145.76 Aligned_cols=75 Identities=25% Similarity=0.383 Sum_probs=70.8
Q ss_pred ccccccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 43 ~kk~kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.+++++..+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|+++|..+.++|.
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~ 82 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAREAALKAQSE 82 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTC
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 445567778999999999999999999999999999999 899999999999999999999999999999999996
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=5.7e-24 Score=140.09 Aligned_cols=74 Identities=27% Similarity=0.403 Sum_probs=68.2
Q ss_pred ccccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 45 k~kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~-s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
++++..+||+.|+||+|||||||+++|..|+.+||++. ++.||+++||++|++||+++|++|+++|..++++|.
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 79 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 79 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999993 269999999999999999999999999999999984
No 3
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.90 E-value=6e-24 Score=144.31 Aligned_cols=74 Identities=26% Similarity=0.424 Sum_probs=69.5
Q ss_pred cccccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 44 kk~kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.++++..+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|+++|..++++|.
T Consensus 6 ~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~ 79 (102)
T 2co9_A 6 SGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYL 79 (102)
T ss_dssp CCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 34456678999999999999999999999999999999 899999999999999999999999999999999985
No 4
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.90 E-value=3.9e-24 Score=144.76 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=67.7
Q ss_pred ccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 47 kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+++.+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|+++|..++++|.
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~ 72 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFE 72 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999999999999 899999999999999999999999999999999963
No 5
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.90 E-value=1e-23 Score=135.77 Aligned_cols=68 Identities=37% Similarity=0.562 Sum_probs=65.8
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
++||+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|++|.+.|..++.+|.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 68 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE 68 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999 899999999999999999999999999999999884
No 6
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=137.62 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=67.8
Q ss_pred ccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 47 kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
++..+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|+++|..+.++|.
T Consensus 9 ~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~ 79 (87)
T 2e6o_A 9 TVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQK 79 (87)
T ss_dssp SCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999 899999999999999999999999999999999885
No 7
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.89 E-value=3.3e-23 Score=133.04 Aligned_cols=66 Identities=26% Similarity=0.288 Sum_probs=62.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 66 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHR 66 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999 899999999999999999999999999999999884
No 8
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.89 E-value=4.6e-24 Score=142.60 Aligned_cols=73 Identities=34% Similarity=0.535 Sum_probs=69.2
Q ss_pred ccccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 45 k~kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
++++..+||+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|++|+++|..++++|.
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~ 82 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYE 82 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTT
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4456678999999999999999999999999999999 899999999999999999999999999999999985
No 9
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.89 E-value=5.1e-23 Score=137.14 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=65.7
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.+||++|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|+++|..++.+|.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~ 69 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYL 69 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999 899999999999999999999999999999999884
No 10
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.88 E-value=3.6e-24 Score=143.96 Aligned_cols=75 Identities=33% Similarity=0.489 Sum_probs=70.0
Q ss_pred ccccccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 43 ~kk~kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s--~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.+++++..+||+.|+||+|||||||+++|..|..+||++ + +.+|+++||++|++||+++|++|+++|..++++|.
T Consensus 10 k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~ 86 (97)
T 2lhj_A 10 VRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYE 86 (97)
T ss_dssp CCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 344566778999999999999999999999999999999 8 99999999999999999999999999999999985
No 11
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.88 E-value=2.6e-23 Score=135.84 Aligned_cols=68 Identities=25% Similarity=0.429 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s--~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
++||+.|+||+||||+||+++|..|+.+||++ + +.+|+++||++|++||+++|++|+++|..++++|.
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~-~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 71 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDA-SVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 71 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTT-CCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999998 5 59999999999999999999999999999999984
No 12
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.88 E-value=1.7e-22 Score=131.66 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=65.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 51 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.|++.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|.
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 69 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFM 69 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999 899999999999999999999999999999999986
No 13
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=134.99 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=64.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 51 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.+|++||||+||||+||+++|..|+.+||++ ++.+|+++||++|++||+++|++|+++|..++++|.
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~ 69 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYN 69 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999 899999999999999999999999999999999884
No 14
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.87 E-value=3.4e-22 Score=131.26 Aligned_cols=66 Identities=26% Similarity=0.288 Sum_probs=63.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.|+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|++|.++|..+.++|.
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~ 66 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHR 66 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999 899999999999999999999999999999999884
No 15
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=132.46 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=59.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHhHhHHHHHHHHh
Q 033449 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAVSSKISTGSFLNL 114 (119)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s-~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~ 114 (119)
+++.||||+|||||||+++|..|+.+||++ + +.||+++||++|++||+++|++|+++|..+.
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~-~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDF-SDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTC-CSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999 8 9999999999999999999999999998774
No 16
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.86 E-value=5.5e-22 Score=126.79 Aligned_cols=63 Identities=32% Similarity=0.559 Sum_probs=61.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
|++|+||+||||+||+++|..|+.+||++ ++.||+++||++|++| ++|++|+++|..++++|.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~ 63 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYH 63 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999 8999999999999999 999999999999999985
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.86 E-value=5.9e-22 Score=125.21 Aligned_cols=64 Identities=25% Similarity=0.359 Sum_probs=58.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+.|+||+|||||||+++|..+..+||++ ++.+|+++||++|++||+++|++|+++|..++.+|.
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 64 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHM 64 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999 899999999999999999999999999999999885
No 18
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.86 E-value=7.3e-22 Score=128.62 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=60.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.++.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|++|+++|+.++++|.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 68 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHM 68 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999 899999999999999999999999999999998884
No 19
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.86 E-value=5.8e-22 Score=126.70 Aligned_cols=63 Identities=33% Similarity=0.562 Sum_probs=60.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.++||||+|||||||+++|+.|+.+||++ ++.||+++||++|++||+ |++|+++|+.++++|.
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~ 63 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYD 63 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999 899999999999999998 9999999999999884
No 20
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.86 E-value=6.4e-22 Score=125.34 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=60.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 55 ~PKRP~say~lF~~e~R~~ik~e~P~~~-s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+||||+||||+||+++|..++.+||++. ++.+|+++||++|++||+++|++|.++|..++++|.
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 65 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 65 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999993 249999999999999999999999999999999984
No 21
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=133.78 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=62.5
Q ss_pred cCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
...+|++.|+||+|||||||+++|+.|+.+||++ ++.+|+++||++|++||+++|++|+++|..++++|.
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~ 91 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHK 91 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999 899999999999999999999999999999999884
No 22
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.86 E-value=1.4e-21 Score=140.70 Aligned_cols=72 Identities=36% Similarity=0.545 Sum_probs=68.4
Q ss_pred cccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 46 ~kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+++..+||+.|+||+||||+||+++|..|+.+||++ ++++|+++||++|++||+++|++|+++|..++++|.
T Consensus 79 ~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 150 (159)
T 2gzk_A 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE 150 (159)
T ss_dssp CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999 899999999999999999999999999999999985
No 23
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.86 E-value=1.3e-21 Score=126.72 Aligned_cols=64 Identities=25% Similarity=0.350 Sum_probs=61.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|++|.++|..++.+|.
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~ 64 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHM 64 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999 899999999999999999999999999999999884
No 24
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.7e-21 Score=128.10 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=61.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|++|.++|..+.++|.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~ 64 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLHM 64 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999 899999999999999999999999999999999885
No 25
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.4e-21 Score=126.06 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=61.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+.|+||+|||||||+++|+.|..+||++ ++.+|+++||++|++||+++|++|+++|+.+.++|.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 64 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHM 64 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999 899999999999999999999999999999998884
No 26
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.5e-21 Score=126.87 Aligned_cols=65 Identities=25% Similarity=0.329 Sum_probs=62.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
++.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|++|.+.|+.+..+|.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~ 66 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHL 66 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999 899999999999999999999999999999998875
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.3e-21 Score=138.63 Aligned_cols=71 Identities=37% Similarity=0.552 Sum_probs=67.8
Q ss_pred ccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 47 kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
++..+||+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|++|+++|..++++|.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 163 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE 163 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHH
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999999 899999999999999999999999999999999985
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=137.30 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=68.0
Q ss_pred ccccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN--VKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 45 k~kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~--~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+.+...+||+.|+||+|||||||+++|..|..+||+ + ++.+|+++||++|++||++||++|+++|..++++|.
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 79 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASV-NFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 79 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 334567899999999999999999999999999999 6 799999999999999999999999999999999884
No 29
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-22 Score=135.72 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=63.3
Q ss_pred ccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhcccC
Q 033449 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLLI 119 (119)
Q Consensus 47 kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s--~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~i 119 (119)
.+..+||++|+||+|||||||+++|+.|+.+||++ + +.||+ ++|+.|++++|++|+++|+.+++.|.|
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~-s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~ 83 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDW-TTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRI 83 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSH-HHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCc-cchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 34456999999999999999999999999999999 8 89998 999999999999999999999999864
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.83 E-value=9.5e-21 Score=130.11 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=63.4
Q ss_pred cccCCCCCCCC-CCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 46 VKSAKKDPNKP-KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 46 ~kk~~kdp~~P-KRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+.++.+||+.| |||+||||+||+++|..|+ ++ ++.||+++||++|++||++||++|+++|..++.+|.
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~ 75 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYE 75 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 45667899999 9999999999999999887 78 899999999999999999999999999999999984
No 31
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-20 Score=126.58 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG---GEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~l---ge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
..+++.||||+|||||||+++|+.|+.+ ++ ++.||+++| |++|++|+++||++|+++|+.+.+.|.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~-~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~ 73 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GL-PVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQG 73 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TC-CCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999988 78 899999999 999999999999999999999999884
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.80 E-value=8.1e-20 Score=114.78 Aligned_cols=60 Identities=27% Similarity=0.288 Sum_probs=55.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
|.||||+||||+||+++|..++.. ++++|+++||++|++||+++|++|+++|..++.+|.
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~-----~p~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~ 60 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGD-----SPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYH 60 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSS-----SHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999754 457999999999999999999999999999999884
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.80 E-value=1e-19 Score=122.13 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=60.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+.|+||+|||++|+++.|..+..+||+ ++++|++.||++|++||++||++|+++|+.|+.+|.
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYe 65 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYE 65 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999998 489999999999999999999999999999999883
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=3.8e-19 Score=120.70 Aligned_cols=65 Identities=11% Similarity=0.140 Sum_probs=58.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 51 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
.+..+||||+|||||||++++. ..+++++ ++.||+++||++|++|+++||++|+++|+.++++|.
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~-~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~ 68 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHL-PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYK 68 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999975 3355668 899999999999999999999999999999999985
No 35
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.76 E-value=4.3e-19 Score=136.10 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
...||+.|++|+|||||||+++|..|+.+||++ ++.||+++||++|++|+++||++|+++|..++++|.
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~ 103 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYK 103 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999 899999999999999999999999999999999884
No 36
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.76 E-value=6.2e-19 Score=133.39 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=63.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
+|++|++|+||||+||+++|..|..+||++ ++.||+++||++|++||++||++|+++|..++++|.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~ 71 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYK 71 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999 899999999999999999999999999999998884
No 37
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.71 E-value=2.3e-17 Score=118.61 Aligned_cols=65 Identities=26% Similarity=0.308 Sum_probs=62.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
|+.|+||+||||+|+++.+..|..+||++ ++.||+++||++|++||+++|++|.++|..+..+|.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 66 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHR 66 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHH
Confidence 67999999999999999999999999999 899999999999999999999999999999998874
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.70 E-value=1.8e-18 Score=130.79 Aligned_cols=67 Identities=25% Similarity=0.213 Sum_probs=60.7
Q ss_pred ccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 47 kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
++..+||+.|+||+||||+||+++|..|. +. +..+|+++||++|++||+++|++|++.|+.++++|.
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k----~~-~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~ 172 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAK----GD-SPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYH 172 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSS----CS-SHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhc----cC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 45578999999999999999999998876 44 566999999999999999999999999999999984
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.8e-18 Score=130.84 Aligned_cols=67 Identities=25% Similarity=0.213 Sum_probs=60.6
Q ss_pred ccCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhccc
Q 033449 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGLL 118 (119)
Q Consensus 47 kk~~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y~ 118 (119)
++..+||+.|+||+|||||||+++|..|. +. +..+|++.||++|++|++++|++|+++|+.++++|.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k----~~-~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~ 204 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAK----GD-SPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYH 204 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSC----CS-SHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHh----cc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 45578999999999999999999998876 44 566899999999999999999999999999999984
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=76.86 E-value=1.6 Score=32.11 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=27.9
Q ss_pred CCCCCHHHHHH-HHHHHhhcCCHHHhHhHHHHHHHHhh
Q 033449 79 PNVKAVSAVGK-AGGEKWKSLTDAVSSKISTGSFLNLL 115 (119)
Q Consensus 79 P~~~s~~eisk-~lge~Wk~Ls~~EK~~Y~~~A~~~~~ 115 (119)
|.. ++..+++ .||..|+.+|+++++.|.+.-...+.
T Consensus 70 p~~-D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~ 106 (211)
T 2qgu_A 70 PRA-DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLI 106 (211)
T ss_dssp GGB-CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHH
T ss_pred hhc-CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHH
Confidence 555 5777776 56999999999999999977555443
No 41
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=43.29 E-value=25 Score=23.31 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHhHhHHHHHHHHhhcc
Q 033449 66 FLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAVSSKISTGSFLNLLGL 117 (119)
Q Consensus 66 F~~e~R~~ik~e~P~~~s~~eisk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y 117 (119)
|+.+.++-+ ..+++ +..++...|-+.|..+..-|=..|.-.+......|
T Consensus 29 iLaER~kpL--~id~l-~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~y 77 (106)
T 1j1d_B 29 ILAERRKVL--AIDHL-NEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKY 77 (106)
T ss_dssp HHHHHHHHH--HHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC--CCCCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhH
Confidence 556666544 45688 78899999999999998888888876666555544
No 42
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.34 E-value=70 Score=19.96 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCCHHHhHhHHH
Q 033449 67 LEEFRKVYKQEHPNVKA-----VSAVGKAGGEKWKSLTDAVSSKIST 108 (119)
Q Consensus 67 ~~e~R~~ik~e~P~~~s-----~~eisk~lge~Wk~Ls~~EK~~Y~~ 108 (119)
...+|..++.-||+. . ..+....|.+.|..|++..+..-.+
T Consensus 35 k~ayr~l~~~~HPDk-~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 80 (99)
T 2yua_A 35 KAAYYRQCFLYHPDR-NSGSAEAAERFTRISQAYVVLGSATLRRKYD 80 (99)
T ss_dssp HHHHHHHHHHSCTTT-CSSCSHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCC-CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 345666667778987 4 3578889999999999776654433
No 43
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=29.59 E-value=88 Score=19.21 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHhHhHHH
Q 033449 67 LEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAVSSKIST 108 (119)
Q Consensus 67 ~~e~R~~ik~e~P~~~-s~~eisk~lge~Wk~Ls~~EK~~Y~~ 108 (119)
...+|..++.-||+.. ...+..+.|.+.|..|++..+..-.+
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3456666777899872 24578889999999998766554333
No 44
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=28.75 E-value=77 Score=20.77 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCCHHHhHhHHHHHHH
Q 033449 87 VGKAGGEKWKSLTDAVSSKISTGSFL 112 (119)
Q Consensus 87 isk~lge~Wk~Ls~~EK~~Y~~~A~~ 112 (119)
..+.-..+++-|||++|..|.+..+.
T Consensus 80 ~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 80 HMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45566789999999999999987765
No 45
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=27.79 E-value=92 Score=18.09 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHHhHh
Q 033449 68 EEFRKVYKQEHPNVKAV--SAVGKAGGEKWKSLTDAVSSK 105 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~s~--~eisk~lge~Wk~Ls~~EK~~ 105 (119)
..+|.....-||+. .. .+....|.+.|..|++..+..
T Consensus 27 ~ayr~l~~~~HPD~-~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (73)
T 2och_A 27 KAYRKMALKFHPDK-NPDGAEQFKQISQAYEVLSDEKKRQ 65 (73)
T ss_dssp HHHHHHHHHTCTTT-CTTCHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHCcCC-CcCHHHHHHHHHHHHHHHCCHHHHH
Confidence 45666667778987 33 477889999999998766544
No 46
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=26.68 E-value=92 Score=21.46 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCCHHHhHhHHHHHHHHhhcc
Q 033449 87 VGKAGGEKWKSLTDAVSSKISTGSFLNLLGL 117 (119)
Q Consensus 87 isk~lge~Wk~Ls~~EK~~Y~~~A~~~~~~Y 117 (119)
..+....++..||++++..|.+..+.-+.++
T Consensus 108 r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~ 138 (145)
T 3itf_A 108 MAKVRNQMYRLLTPEQQAVLNEKHQQRMEQL 138 (145)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 3455568899999999999999888776543
No 47
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.77 E-value=82 Score=18.56 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCCHHHhHh
Q 033449 67 LEEFRKVYKQEHPNVK----AVSAVGKAGGEKWKSLTDAVSSK 105 (119)
Q Consensus 67 ~~e~R~~ik~e~P~~~----s~~eisk~lge~Wk~Ls~~EK~~ 105 (119)
-..+|..+..-||+.. ...+....|.+.|..|++..+..
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3456666677788862 12477889999999998765543
No 48
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=24.35 E-value=1.1e+02 Score=17.82 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCCHHHhHhHH
Q 033449 68 EEFRKVYKQEHPNVK---AVSAVGKAGGEKWKSLTDAVSSKIS 107 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~---s~~eisk~lge~Wk~Ls~~EK~~Y~ 107 (119)
..+|..+..-||+.. ...+....|.+.|..|++..+..-.
T Consensus 22 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 64 (77)
T 1hdj_A 22 RAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64 (77)
T ss_dssp HHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 455666667788762 2457888999999999877655433
No 49
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.67 E-value=1.2e+02 Score=19.27 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCCH-----HHHHHHHHHHhhcCCHHHhHhHHH
Q 033449 68 EEFRKVYKQEHPNVKAV-----SAVGKAGGEKWKSLTDAVSSKIST 108 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~s~-----~eisk~lge~Wk~Ls~~EK~~Y~~ 108 (119)
..+|..++.-||+. .. .+..+.|.+.|..|++..+....+
T Consensus 36 ~aYr~la~~~HPDk-~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 80 (109)
T 2ctw_A 36 KSYRKLALKYHPDK-NPDNPEAADKFKEINNAHAILTDATKRNIYD 80 (109)
T ss_dssp HHHHHHHHHSCTTT-STTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCcCC-CCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 45666667778987 43 467889999999998766554333
No 50
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.73 E-value=1.3e+02 Score=17.65 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCCHHHhHh
Q 033449 68 EEFRKVYKQEHPNVK---AVSAVGKAGGEKWKSLTDAVSSK 105 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~---s~~eisk~lge~Wk~Ls~~EK~~ 105 (119)
..+|..+..-||+.. ...+....|.+.|..|++..+..
T Consensus 26 ~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 66 (78)
T 2ctp_A 26 KAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66 (78)
T ss_dssp HHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 445555566689872 13567788999999998766543
No 51
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=20.06 E-value=1.4e+02 Score=18.00 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCCHHHhH-hHH
Q 033449 68 EEFRKVYKQEHPNVK---AVSAVGKAGGEKWKSLTDAVSS-KIS 107 (119)
Q Consensus 68 ~e~R~~ik~e~P~~~---s~~eisk~lge~Wk~Ls~~EK~-~Y~ 107 (119)
..+|..+..-||+.. ...+....|.+-|..|++..+. .|.
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 79 (88)
T 2cug_A 36 KAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79 (88)
T ss_dssp HHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 455556666788862 2457888999999999866544 444
Done!