BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033451
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P305|IGO2_YEAST mRNA stability protein IGO2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=IGO2 PE=1 SV=3
Length = 131
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 31 EEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEK 73
+E L K YG + KK L K +R YFDS D+AL K GV K
Sbjct: 33 QELKLYKMYGKLPSKKDLLRHKMQDRQYFDSGDYALKKAGVIK 75
>sp|P53897|IGO1_YEAST mRNA stability protein IGO1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=IGO1 PE=1 SV=1
Length = 168
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 31 EEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEK 73
E L K YG + KK +R YFDS D+AL K G++
Sbjct: 34 NEMKLYKMYGKLPSKKDIFKHTMQKRKYFDSGDYALQKAGIQN 76
>sp|P79058|IGO1_SCHPO mRNA stability protein mug134 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mug134 PE=2 SV=4
Length = 139
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 31 EEAALKKKYGGIVPKKPPLISKDHE-RAYFDSADWALGKQG 70
EE L + YG + +K L+ K + R YFDS D+AL K G
Sbjct: 33 EEQKLFRLYGRLPQRKDLLVQKLQQGRKYFDSGDYALNKAG 73
>sp|Q2UPK0|ERB1_ASPOR Ribosome biogenesis protein erb1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=erb1 PE=3 SV=1
Length = 783
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 17 APEESQKTMPSSEEEEAALKK----KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVE 72
APE ++ +PS E + +K + G I+P KPP +D E+ D ++ L E
Sbjct: 246 APEPKRRFVPSKHEAKRVMKIVKAIREGRILPYKPPTEEEDKEQ---DVVNYDLWADETE 302
Query: 73 KPKGPLEALRPKLQPTQQQTRYRKSP-YAP 101
+P P+ PKL P + Y P Y P
Sbjct: 303 RPDHPMHIPAPKLPPPGYEESYHPPPEYLP 332
>sp|P14340|POLG_DEN2N Genome polyprotein OS=Dengue virus type 2 (strain
Thailand/NGS-C/1944) PE=1 SV=2
Length = 3391
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 25 MPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSA 62
MPS E+ AL++KYGG + + P + HE + +A
Sbjct: 2678 MPSVIEKMEALQRKYGGALVRNPLSRNSTHEMYWLSNA 2715
>sp|P29990|POLG_DEN26 Genome polyprotein OS=Dengue virus type 2 (strain
Thailand/16681/1984) PE=1 SV=1
Length = 3391
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 25 MPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEA---L 81
MPS E+ AL++KYGG + + P + HE + +A G + + +
Sbjct: 2678 MPSVIEKMEALQRKYGGALVRNPLSRNSTHEMYWVSNAS------------GNIVSSVNM 2725
Query: 82 RPKLQPTQQQTRYRKSPYAP 101
++ + RY+K+ Y P
Sbjct: 2726 ISRMLINRFTMRYKKATYEP 2745
>sp|P29991|POLG_DEN27 Genome polyprotein OS=Dengue virus type 2 (strain 16681-PDK53) PE=1
SV=1
Length = 3391
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 25 MPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEA---L 81
MPS E+ AL++KYGG + + P + HE + +A G + + +
Sbjct: 2678 MPSVIEKMEALQRKYGGALVRNPLSRNSTHEMYWVSNAS------------GNIVSSVNM 2725
Query: 82 RPKLQPTQQQTRYRKSPYAP 101
++ + RY+K+ Y P
Sbjct: 2726 ISRMLINRFTMRYKKATYEP 2745
>sp|A2QPZ4|ERB1_ASPNC Ribosome biogenesis protein erb1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=erb1 PE=3 SV=1
Length = 788
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 17 APEESQKTMPSSEEEEAALKK----KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVE 72
APE ++ +PS E + +K + G I+P KPP K+ + + WA E
Sbjct: 251 APEPKRRFVPSKHEAKRVMKIVKAIREGRILPYKPPSEEKEEDLELINYDLWA---DEAE 307
Query: 73 KPKGPLEALRPKLQPTQQQTRYRKSP-YAPAGGE 105
+P P+ PKL P + Y P Y P E
Sbjct: 308 RPDHPMHVPAPKLPPPGYEESYHPPPEYLPDNKE 341
>sp|Q0CCP0|ERB1_ASPTN Ribosome biogenesis protein erb1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=erb1 PE=3 SV=1
Length = 784
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 17 APEESQKTMPSSEEEEAALKK----KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVE 72
APE ++ +PS E + +K K G I+P KPP +D ++ + WA E
Sbjct: 248 APEPKRRFVPSKHEAKRVMKIVKAIKEGRILPYKPP-TEEDEDKDVINYDLWA---DEAE 303
Query: 73 KPKGPLEALRPKLQPTQQQTRYRKSP-YAP 101
+P P+ PKL P + Y P Y P
Sbjct: 304 RPDHPMHVPAPKLPPPGYEESYHPPPEYLP 333
>sp|B2U928|GCP_RALPJ Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Ralstonia pickettii (strain 12J) GN=gcp PE=3 SV=1
Length = 347
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 32 EAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEK 73
+ A+ ++YGG+VP+ L S+DH R + LGK G +
Sbjct: 32 QIAMHREYGGVVPE---LASRDHIRRVIPLLEEVLGKAGATR 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.125 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,920,456
Number of Sequences: 539616
Number of extensions: 2300144
Number of successful extensions: 5159
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 5103
Number of HSP's gapped (non-prelim): 137
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 55 (25.8 bits)