Query 033451
Match_columns 119
No_of_seqs 105 out of 200
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 23:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033451.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033451hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bpoa1 a.118.1.4 (A:331-487) 32.3 3.2 0.00023 29.5 -0.8 36 32-70 18-53 (157)
2 d2efva1 a.43.1.12 (A:6-87) Unc 28.5 7.8 0.00057 24.9 0.7 17 26-42 53-69 (82)
3 d1d6za1 b.30.2.1 (A:301-724) C 24.4 6.9 0.0005 30.9 -0.2 17 56-72 79-95 (424)
4 d2jmua1 d.63.1.2 (A:2-224) Thi 21.2 12 0.00089 25.7 0.6 17 56-72 36-52 (223)
5 d1w2za1 b.30.2.1 (A:207-647) C 16.6 13 0.00094 29.4 -0.2 17 56-72 90-106 (441)
6 d1w6ga1 b.30.2.1 (A:212-628) C 15.2 16 0.0011 28.7 -0.0 17 56-72 83-99 (417)
7 d2do3a1 b.34.5.5 (A:462-523) T 12.7 22 0.0016 21.4 0.2 17 56-72 8-24 (62)
8 d2csba4 a.60.2.4 (A:465-519) T 10.8 67 0.0049 18.6 1.9 14 29-42 14-27 (55)
9 d1qbaa4 d.92.2.1 (A:201-337) B 9.7 71 0.0052 19.6 2.0 22 75-96 7-28 (137)
10 d2oqea1 b.30.2.1 (A:237-672) C 9.0 30 0.0022 27.3 -0.3 17 56-72 79-95 (436)
No 1
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.30 E-value=3.2 Score=29.52 Aligned_cols=36 Identities=6% Similarity=0.105 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCCCCCccccccccCccccchhhhhhhcC
Q 033451 32 EAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQG 70 (119)
Q Consensus 32 E~kL~~KYG~L~~Kk~~L~~k~keRKYFDSgDyam~Kag 70 (119)
..++..+|| ||.--++++.+.++ +|..|||.=+--.
T Consensus 18 a~~lA~r~~-LpGAd~l~~~~F~~--lf~~g~y~eAA~~ 53 (157)
T d1bpoa1 18 ALRMAVRNN-LAGAEELFARKFNA--LFAQGNYSEAAKV 53 (157)
T ss_dssp HHHHHHHTT-CSSCHHHHHHHHHH--HHHTTCHHHHHHH
T ss_pred HHHHHHhcC-CCChHHHHHHHHHH--HHHcCCHHHHHHH
Confidence 456777877 88887888888874 9999999655433
No 2
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]}
Probab=28.55 E-value=7.8 Score=24.92 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.1
Q ss_pred CCcHHHHHHHHHHhCCC
Q 033451 26 PSSEEEEAALKKKYGGI 42 (119)
Q Consensus 26 ~~~~~eE~kL~~KYG~L 42 (119)
-..+++|+++..|||++
T Consensus 53 ltLs~~Ee~IIeKyGKa 69 (82)
T d2efva1 53 ITLTEEEEVIIQRLGKS 69 (82)
T ss_dssp EECCHHHHHHHHHHGGG
T ss_pred eEecHHHHHHHHHHHHH
Confidence 34678999999999964
No 3
>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3 {Escherichia coli [TaxId: 562]}
Probab=24.41 E-value=6.9 Score=30.94 Aligned_cols=17 Identities=35% Similarity=0.724 Sum_probs=13.8
Q ss_pred CccccchhhhhhhcCCC
Q 033451 56 RAYFDSADWALGKQGVE 72 (119)
Q Consensus 56 RKYFDSgDyam~Kag~~ 72 (119)
+.|||+|||-|+.....
T Consensus 79 ~~~~D~Ge~G~G~~a~~ 95 (424)
T d1d6za1 79 KAYLDSGDYGMGTLTSP 95 (424)
T ss_dssp CEECHHHHHCTTTTBCC
T ss_pred ceeEeccccCcCccccc
Confidence 36999999999886654
No 4
>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.21 E-value=12 Score=25.74 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.6
Q ss_pred CccccchhhhhhhcCCC
Q 033451 56 RAYFDSADWALGKQGVE 72 (119)
Q Consensus 56 RKYFDSgDyam~Kag~~ 72 (119)
-.|||..|+.|.+++..
T Consensus 36 d~YfDtpd~~L~~~~~a 52 (223)
T d2jmua1 36 DTYYDTSELSLMLSDHW 52 (223)
T ss_dssp EEEEECTTSHHHHTTCE
T ss_pred EEEEcCCChhHHhCCce
Confidence 46999999999988864
No 5
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=16.64 E-value=13 Score=29.41 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=13.8
Q ss_pred CccccchhhhhhhcCCC
Q 033451 56 RAYFDSADWALGKQGVE 72 (119)
Q Consensus 56 RKYFDSgDyam~Kag~~ 72 (119)
+.|||+|+|-|+.....
T Consensus 90 k~~~D~g~yG~G~~a~~ 106 (441)
T d1w2za1 90 KTFFDSGEFGFGLSTVS 106 (441)
T ss_dssp CEECHHHHHCTTTTBCC
T ss_pred ceeEcccCccccccccc
Confidence 46999999998876654
No 6
>d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]}
Probab=15.19 E-value=16 Score=28.73 Aligned_cols=17 Identities=24% Similarity=0.686 Sum_probs=14.2
Q ss_pred CccccchhhhhhhcCCC
Q 033451 56 RAYFDSADWALGKQGVE 72 (119)
Q Consensus 56 RKYFDSgDyam~Kag~~ 72 (119)
+.|||+|+|-|+.....
T Consensus 83 ~~~~D~ge~G~G~~a~~ 99 (417)
T d1w6ga1 83 QNYFDTGEYLVGQYANS 99 (417)
T ss_dssp CEEECCCCCCGGGGBCC
T ss_pred ceeEeccccchhhhccc
Confidence 46999999999987654
No 7
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.66 E-value=22 Score=21.36 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=13.9
Q ss_pred CccccchhhhhhhcCCC
Q 033451 56 RAYFDSADWALGKQGVE 72 (119)
Q Consensus 56 RKYFDSgDyam~Kag~~ 72 (119)
||||.-||+..-=+|.-
T Consensus 8 rK~F~~GDhVkVi~G~~ 24 (62)
T d2do3a1 8 RKYFKMGDHVKVIAGRF 24 (62)
T ss_dssp CSSCCTTCEEEESSSTT
T ss_pred eeccCCCCeEEEeccEE
Confidence 89999999987766653
No 8
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=10.81 E-value=67 Score=18.59 Aligned_cols=14 Identities=50% Similarity=0.771 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhCCC
Q 033451 29 EEEEAALKKKYGGI 42 (119)
Q Consensus 29 ~~eE~kL~~KYG~L 42 (119)
++.-++|.+|||+.
T Consensus 14 reraerllkkyggy 27 (55)
T d2csba4 14 RERAERLLKKYGGY 27 (55)
T ss_dssp HHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHhcCh
Confidence 45667888999984
No 9
>d1qbaa4 d.92.2.1 (A:201-337) Bacterial chitobiase, Domain 2 {Serratia marcescens [TaxId: 615]}
Probab=9.70 E-value=71 Score=19.56 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=15.1
Q ss_pred CCCcccCCCCCCCCCCcCCCCC
Q 033451 75 KGPLEALRPKLQPTQQQTRYRK 96 (119)
Q Consensus 75 ~~pie~L~pkl~PTpq~lp~Rk 96 (119)
..|...+.+.++|+|+.+-...
T Consensus 7 ~lp~~~~~~~IiP~P~~v~~~~ 28 (137)
T d1qbaa4 7 TLPAGALRGKIVPTPMQVKVHA 28 (137)
T ss_dssp CCCGGGGTTCCSSCCSEEEEEE
T ss_pred cCCcccCCCCEEccCcEEEECC
Confidence 4555667889999997654433
No 10
>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast (Hansenula polymorpha) [TaxId: 4905]}
Probab=9.01 E-value=30 Score=27.26 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=13.6
Q ss_pred CccccchhhhhhhcCCC
Q 033451 56 RAYFDSADWALGKQGVE 72 (119)
Q Consensus 56 RKYFDSgDyam~Kag~~ 72 (119)
+.|||+|+|-|+.....
T Consensus 79 ~~~~D~geyG~G~~a~~ 95 (436)
T d2oqea1 79 KHALDIGEYGAGYMTNP 95 (436)
T ss_dssp CEECHHHHTCTTTTBCC
T ss_pred ceEEeccCccCCccccc
Confidence 46999999988876554
Done!