BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033452
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 216 bits (551), Expect = 2e-57, Method: Composition-based stats.
Identities = 96/119 (80%), Positives = 105/119 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+I LDIL
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAMG
Sbjct: 92 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 209 bits (532), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 105/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 35 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 94
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 95 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 152
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 209 bits (531), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 105/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 48 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 107
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 108 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 209 bits (531), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 105/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 92 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 209 bits (531), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 105/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 92 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 208 bits (530), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 105/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 30 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 89
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 90 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 208 bits (529), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 105/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 40 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 99
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + +TD+ KY AR WTQKYAM
Sbjct: 100 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQKYAM 157
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 208 bits (529), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 93/118 (78%), Positives = 109/118 (92%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+FHWQATI+GP DSPYAGGVF ++IHFP DYPFKPPKV F T+++HPNINSNG+ICLDIL
Sbjct: 30 LFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDIL 89
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
++QWSPALTISKVLLSI SLLTDPNPDDPLVPEIAH+ KTD+++YE SAR WT+KYA+
Sbjct: 90 RDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 207 bits (528), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 105/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 40 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 99
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY +R WTQKYAM
Sbjct: 100 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 157
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 207 bits (528), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 105/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY +R WTQKYAM
Sbjct: 92 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 149
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 207 bits (527), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 105/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 29 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 88
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY +R WTQKYAM
Sbjct: 89 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 146
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 207 bits (527), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 105/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 38 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 97
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY +R WTQKYAM
Sbjct: 98 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 155
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 207 bits (526), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 104/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QW PALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 92 RSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 104/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLD L
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDAL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 92 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 104/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQAT +GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 32 MFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 92 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 206 bits (525), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 94/118 (79%), Positives = 106/118 (89%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+FHWQATI+GP+DSPY GGVF +TIHFP DYPFKPPKVAF TK++HPNINSNG+ICLDIL
Sbjct: 35 LFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDIL 94
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IAH+ K+DK KY AR WTQKYAM
Sbjct: 95 RSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQKYAM 152
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 206 bits (524), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 91/118 (77%), Positives = 110/118 (93%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
++HWQA+I+GP DSPYAGGVF ++IHFP DYPFKPPK++F TK++HPNIN+NGNICLDIL
Sbjct: 31 LYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDIL 90
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
K+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIAH+ KTD+ KYE++AR WT+KYA+
Sbjct: 91 KDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV 148
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 205 bits (522), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 104/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+I LDIL
Sbjct: 33 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 92
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 93 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 150
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 205 bits (521), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 104/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+I LDIL
Sbjct: 48 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDIL 107
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 108 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 204 bits (519), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/118 (79%), Positives = 104/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+I LDIL
Sbjct: 30 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 89
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY +R WTQKYAM
Sbjct: 90 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 203 bits (516), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/118 (79%), Positives = 103/118 (87%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+I LDIL
Sbjct: 29 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 88
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPAL ISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 89 RSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 146
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 202 bits (515), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/118 (79%), Positives = 103/118 (87%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GPNDSPY GGVF +TIHFP DYPFKPPKVAF T+++HP INSNG+I LDIL
Sbjct: 30 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDIL 89
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ KY AR WTQKYAM
Sbjct: 90 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 202 bits (514), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 104/118 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+FHWQATI+GP +SPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNG+ICLDIL
Sbjct: 33 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 92
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA + KTD+ +Y AR WTQKYAM
Sbjct: 93 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 202 bits (513), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 91/117 (77%), Positives = 104/117 (88%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
MFHWQATI+GP DSPY+GGVF + IHFP DYPFKPPKV F TK++HPNINS G ICLDIL
Sbjct: 50 MFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDIL 109
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
K+QWSPALTISKVLLSI SLLTDPNPDDPLVPEIAH+ K+D+ +Y+ +AR W+QKYA
Sbjct: 110 KDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 199 bits (506), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 90/118 (76%), Positives = 103/118 (87%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+FHWQATI+GP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNG+ICLDIL
Sbjct: 36 LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 95
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA + K+DK KY AR WTQKYAM
Sbjct: 96 RSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 199 bits (506), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 90/118 (76%), Positives = 103/118 (87%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+FHWQATI+GP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNG+ICLDIL
Sbjct: 48 LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 107
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA + K+DK KY AR WTQKYAM
Sbjct: 108 RSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 165
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 199 bits (505), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 90/118 (76%), Positives = 103/118 (87%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+FHWQATI+GP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNG+ICLDIL
Sbjct: 32 LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA + K+DK KY AR WTQKYAM
Sbjct: 92 RSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 149
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 195 bits (495), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 89/118 (75%), Positives = 102/118 (86%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+FHWQATI+GP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNG+I LDIL
Sbjct: 36 LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDIL 95
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA + K+DK KY AR WTQKYAM
Sbjct: 96 RSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 78/117 (66%), Positives = 97/117 (82%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+FHW ATI GP+DSPY GG+F + +HFP DYPFK P+V F TKV+HPNIN NG ICLDIL
Sbjct: 33 IFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDIL 92
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
K+QWSPALT+S+VLLSI SLLTDPNP DPL PE+A++ + +K ++E +AR WT+ YA
Sbjct: 93 KDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYA 149
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 91/117 (77%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
++ W++TI+GP S Y GGVF + I F PDYPFKPPKV F+T+++H NINS G ICLDIL
Sbjct: 32 IYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
K+ WSPALTISKVLLSICSLLTD NP DPLV IA T++ +++ AR WT++YA
Sbjct: 92 KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 91/117 (77%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
++ W++TI+GP S Y GGVF + I F P+YPFKPPKV F+T+++H NINS G ICLDIL
Sbjct: 77 IYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 136
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
K+ WSPALTISKVLLSICSLLTD NP DPLV IA T++ +++ AR WT++YA
Sbjct: 137 KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 81/116 (69%)
Query: 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE 62
++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ G ICLDILK+
Sbjct: 34 YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 93
Query: 63 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+WSPAL I VLLSI +LL+ PNPDDPL ++A KT++ + +AR+WT+ YAM
Sbjct: 94 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 81/116 (69%)
Query: 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE 62
++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ G ICLDILK+
Sbjct: 37 YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 96
Query: 63 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+WSPAL I VLLSI +LL+ PNPDDPL ++A KT++ + +AR+WT+ YAM
Sbjct: 97 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 152
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 81/116 (69%)
Query: 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE 62
++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ G ICLDILK+
Sbjct: 36 YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 95
Query: 63 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+WSPAL I VLLSI +LL+ PNPDDPL ++A KT++ + +AR+WT+ YAM
Sbjct: 96 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 151
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 81/116 (69%)
Query: 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE 62
++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ G ICLDILK+
Sbjct: 39 YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 98
Query: 63 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+WSPAL I VLLSI +LL+ PNPDDPL ++A KT++ + +AR+WT+ YAM
Sbjct: 99 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 154
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 81/116 (69%)
Query: 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE 62
++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ G ICLDILK+
Sbjct: 32 YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 91
Query: 63 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
+WSPAL I VLLSI +LL+ PNPDDPL ++A KT++ + +AR+WT+ YAM
Sbjct: 92 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 147
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN-GNICLDI 59
F W I GP +PY GG F + I P DYP+ PPK+ F TK++HPNI+S G ICLD+
Sbjct: 52 FFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDV 111
Query: 60 LKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119
LK +WSPALTI LLSI +LL+DP PDDP E+A M K + + +A WT+ +A G
Sbjct: 112 LKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 76/115 (66%)
Query: 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE 62
H+ I GP+ +PY GG + + + P YP +PPKV F TK++HPNI+ G ICLDILK+
Sbjct: 32 HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD 91
Query: 63 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+WSPAL I VLLSI +LL+ P PDDPL ++A K DK E AR W + YA
Sbjct: 92 KWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 76/115 (66%)
Query: 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE 62
H+ I GP+ +PY GG + + + P YP +PPKV F TK++HPNI+ G ICLDILK+
Sbjct: 32 HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD 91
Query: 63 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+WSPAL I VLLSI +LL+ P PDDPL ++A K DK E AR W + YA
Sbjct: 92 KWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 124 bits (312), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 78/117 (66%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ ++Q TI GP SPY G+F + ++ P DYP + PKV F TK++HPNI+ G ICLD+L
Sbjct: 34 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL 93
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
K WSPAL I VLLSI +LL PNP+DPL ++A ++ ++ AR WT+ YA
Sbjct: 94 KTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 150
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 78/117 (66%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ ++Q TI GP SPY G+F + ++ P DYP + PKV F TK++HPNI+ G ICLD+L
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
K WSPAL I VLLSI +LL PNP+DPL ++A ++ ++ AR WT+ YA
Sbjct: 92 KTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 121 bits (304), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 77/117 (65%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ ++Q TI GP SPY G+F + ++ P DYP + PKV F TK++HPNI+ G I LD+L
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDVL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
K WSPAL I VLLSI +LL PNP+DPL ++A ++ ++ AR WT+ YA
Sbjct: 92 KTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDI 59
+ H + T +GP +PY GG FVV I P +YPFKPPK+ F TKV+HPNI+S G ICLDI
Sbjct: 32 IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDI 91
Query: 60 LKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
L+ WSP +T+ L+S+ +LL P P+DP E+A D+ + +A WT+ YA
Sbjct: 92 LRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDI 59
+ H + T +GP +PY GG FVV I P +YPFKPPK+ F TKV+HPNI+S G ICLDI
Sbjct: 31 IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDI 90
Query: 60 LKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
LK WSP +T+ L+S+ +LL P P+DP E+A D+ + +A WT+ YA
Sbjct: 91 LKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN-GNICLDI 59
+ W+ I GP +PY GG F + I PPDYP+ PPK+ F TK++HPNI+S G ICLDI
Sbjct: 74 IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDI 133
Query: 60 LKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
LK +WSPALTI LLSI ++L DP P DP E+A M + + +A+ WT+ +A
Sbjct: 134 LKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 118 bits (296), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 76/117 (64%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ ++Q TI GP SPY G+F + ++ P DYP + PKV F TK++HP I+ G I LD+L
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVL 91
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
K WSPAL I VLLSI +LL PNP+DPL ++A ++ ++ AR WT+ YA
Sbjct: 92 KTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 73/115 (63%), Gaps = 5/115 (4%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQ 63
W A I GP+D+P+ GG F +++ F DYP KPP V F +++FHPNI ++G+ICLDIL+ Q
Sbjct: 36 WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ 95
Query: 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSAR-----SWT 113
WSP ++ +L SI SLL DPNP+ P E A M K +Y R SWT
Sbjct: 96 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 80/121 (66%), Gaps = 4/121 (3%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
M +A I+G ++PY GVF + + P YPF+PP++ F T ++HPNI+S G ICLD+L
Sbjct: 33 MDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVL 92
Query: 61 ----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116
K W P+L I+ VL SI L+++PNPDDPL+ +I+ K +K + +AR WT+K+
Sbjct: 93 KLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKH 152
Query: 117 A 117
A
Sbjct: 153 A 153
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ WQ I+ P++ PY G F + I+FP +YPFKPPK+ FKTK++HPNI+ G +CL ++
Sbjct: 34 LLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVI 92
Query: 61 K-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
E W PA +V+ S+ +L+ DP P+ PL ++A D+ K+ +A +T+KY
Sbjct: 93 SAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 69/106 (65%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ W A I GP +P+ G F + I F +YP KPP V F +K+FHPN+ ++G+ICLDIL
Sbjct: 33 IMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL 92
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYE 106
+ +WSP +S +L SI SLL +PNP+ P + A + + +K +YE
Sbjct: 93 QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ WQ I+ P++ PY G F + I+FP +YPFKPPK+ FKTK++HPNI+ G +CL ++
Sbjct: 32 LLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVI 90
Query: 61 K-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
E W PA +V+ S+ +L+ DP P+ PL ++A D+ K+ +A +T+KY
Sbjct: 91 SAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 5/114 (4%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQ 63
W A IIGP D+PY G F + + F +YP KPP V F +++FHPN+ +NG ICLDIL+ +
Sbjct: 36 WNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNR 95
Query: 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKY-----ESSARSW 112
W+P ++ +L SI SL DPNP P E A + K K++Y E+ +SW
Sbjct: 96 WTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 74/115 (64%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ W+A I GP ++P+ G F +++ F +YP KPP V F +K+FHPN+ ++G+ICLDIL
Sbjct: 33 ILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL 92
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQK 115
+ +WSP ++ +L SI SLL +PNP+ P A + + ++ +YE + ++
Sbjct: 93 QNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 74/115 (64%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ W+A I GP ++P+ G F +++ F +YP KPP V F +K+FHPN+ ++G+ICLDIL
Sbjct: 36 ILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL 95
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQK 115
+ +WSP ++ +L SI SLL +PNP+ P A + + ++ +YE + ++
Sbjct: 96 QNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 150
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+F W AT+ GP D+ Y + +T+ FP DYP+KPP V F T +HPN++ +GNICLDIL
Sbjct: 38 LFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDIL 97
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYE 106
KE W+ + + +LLS+ SLL +PN PL + A M +++T+Y+
Sbjct: 98 KENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYK 142
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 67/113 (59%)
Query: 5 QATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQW 64
Q TI GP +PYAGG+F + + D+P PPK F TK+FHPN+ +NG IC+++LK W
Sbjct: 46 QVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDW 105
Query: 65 SPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+ L I VLL+I LL PNP+ L E + + +Y + AR T+ +
Sbjct: 106 TAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 5 QATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQ 63
+ I GP D+PY GG + + I P YPF PPKV F TK++HPNI+S G ICLDILK+Q
Sbjct: 57 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 116
Query: 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
W+ A+T+ VLLS+ +LL PDDP +A+ K + ++ +AR W YA
Sbjct: 117 WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 170
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 5 QATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQ 63
+ I GP D+PY GG + + I P YPF PPKV F TK++HPNI+S G ICLDILK+Q
Sbjct: 44 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 103
Query: 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
W+ A+T+ VLLS+ +LL PDDP +A+ K + ++ +AR W YA
Sbjct: 104 WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 157
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 5 QATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQ 63
+ I GP D+PY GG + + I P YPF PPKV F TK++HPNI+S G ICLDILK+Q
Sbjct: 93 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 152
Query: 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
W+ A+T+ VLLS+ +LL PDDP +A+ K + ++ +AR W YA
Sbjct: 153 WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 206
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 5 QATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQ 63
+ I GP D+PY GG + + I P YPF PPKV F TK++HPNI+S G ICLDILK+Q
Sbjct: 41 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 100
Query: 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
W+ A+T+ VLLS+ +LL PDDP +A+ K + ++ +AR W YA
Sbjct: 101 WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 154
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 5 QATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQ 63
+ I GP D+PY GG + + I P YPF PPKV F TK++HPNI+S G ICLDILK+Q
Sbjct: 42 RGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ 101
Query: 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
W+ A+T+ VLLS+ +LL PDDP +A+ K + ++ +AR W YA
Sbjct: 102 WAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 155
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 98.2 bits (243), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 13/116 (11%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
++ W+ IIGP D+ Y GGVF + FP DYP +PPK+ F T+++HPN++ NG++C+ IL
Sbjct: 47 LYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISIL 106
Query: 61 -------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKT 103
+E+W P T+ +++S+ S+L DPN D P + A + D+
Sbjct: 107 HEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRN 162
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G + + GG++ +T+ FP +YP +PPK F +FHPN+ +G +CL IL
Sbjct: 44 LMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSIL 103
Query: 61 KEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
E+ W PA+TI ++LL I LL DPN P E M K DK +YE R+ ++ A
Sbjct: 104 NEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G +CL IL
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSIL 100
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN DP E + ++ +YE R+ +K+A
Sbjct: 101 EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G +CL IL
Sbjct: 43 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 102
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN DP E + ++ +YE R+ +K+A
Sbjct: 103 EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G +CL IL
Sbjct: 40 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 99
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN DP E + ++ +YE R+ +K+A
Sbjct: 100 EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 13/122 (10%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
++ W+ +IGP D+ Y GG F + FP DYP KPPK+ F ++++HPNI+ GN+C+ IL
Sbjct: 33 IYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISIL 92
Query: 61 -------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYES 107
+E+W P T+ +LLS+ S+LTDPN + P + A M + + +++
Sbjct: 93 HDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKK 152
Query: 108 SA 109
Sbjct: 153 KV 154
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G +CL IL
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN DP E + ++ +YE R+ +K+A
Sbjct: 98 EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G +CL IL
Sbjct: 39 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 98
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN DP E + ++ +YE R+ +K+A
Sbjct: 99 EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL- 60
F W+A I+GP D+ + GVF + FP DYP PPK+ F ++FHPNI +G +C+ IL
Sbjct: 40 FEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 99
Query: 61 ------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESS 108
E+WSP ++ K+LLS+ S+L +PN + + + M + D+ ++
Sbjct: 100 APGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKI 159
Query: 109 ARSWTQK 115
A+ QK
Sbjct: 160 AKQIVQK 166
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G +CL IL
Sbjct: 40 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 99
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN DP E + ++ +YE R+ +K+A
Sbjct: 100 EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G +CL IL
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 100
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN DP E + ++ +YE R+ +K+A
Sbjct: 101 EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL- 60
F W+A I+GP D+ + GVF + FP DYP PPK+ F ++FHPNI +G +C+ IL
Sbjct: 34 FEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 93
Query: 61 ------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESS 108
E+WSP ++ K+LLS+ S+L +PN + + + M + D+ ++
Sbjct: 94 APGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKI 153
Query: 109 ARSWTQK 115
A+ QK
Sbjct: 154 AKQIVQK 160
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL- 60
F W+A I+GP D+ + GVF + FP DYP PPK+ F ++FHPNI +G +C+ IL
Sbjct: 38 FEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 97
Query: 61 ------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESS 108
E+WSP ++ K+LLS+ S+L +PN + + + M + D+ ++
Sbjct: 98 APGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKI 157
Query: 109 ARSWTQK 115
A+ QK
Sbjct: 158 AKQIVQK 164
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL- 60
F W+A I+GP D+ + GVF + FP DYP PPK+ F ++FHPNI +G +C+ IL
Sbjct: 37 FEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 96
Query: 61 ------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESS 108
E+WSP ++ K+LLS+ S+L +PN + + + M + D+ ++
Sbjct: 97 APGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKI 156
Query: 109 ARSWTQK 115
A+ QK
Sbjct: 157 AKQIVQK 163
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHP + +G +CL IL
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSIL 100
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN DP E + ++ +YE R+ +K+A
Sbjct: 101 EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G +CL IL
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 100
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN P E + ++ +YE R+ +K+A
Sbjct: 101 EEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G + L IL
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSIL 97
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN DP E + ++ +YE R+ +K+A
Sbjct: 98 EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G +CL IL
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 100
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN P E + ++ +YE R+ +K+A
Sbjct: 101 EEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+ +W+ I G +P+ GG+F + + F DYP PPK F+ +FHPN+ +G + L IL
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSIL 97
Query: 61 KE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+E W PA+TI ++LL I LL +PN DP E + ++ +YE R+ +K+A
Sbjct: 98 EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%)
Query: 8 IIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPA 67
+I P++ Y G FV + YP PPKV +T V+HPNI+ GN+CL+IL+E W P
Sbjct: 40 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPV 99
Query: 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119
LTI+ ++ + L +PNP+DPL E A + + ++ +E + + + +G
Sbjct: 100 LTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXRGGYIG 151
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDI 59
MFH GPN + Y GG++ V + P DYPF P + F K+ HPN++ ++G++CLD+
Sbjct: 34 MFH------GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDV 87
Query: 60 LKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+ + W+P ++ V + + LLT PNP DPL + A + DK YE + + + YA
Sbjct: 88 INQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 13/123 (10%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+F W I GP D+PYA GVF + FP DYP PPK+ F + HPNI NG +C+ IL
Sbjct: 34 IFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISIL 93
Query: 61 -------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYES 107
+E+WSP ++ K+LLS+ S+L++PN + + + + ++ ++E
Sbjct: 94 HSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFER 153
Query: 108 SAR 110
+
Sbjct: 154 QVK 156
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE- 62
W+A I G + +AGGV+ +T+ +P +YP KPPKV F +HPN+ +G ICL IL E
Sbjct: 41 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 100
Query: 63 -QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
W PA+T+ +++L + LL PNP+ P +K +Y+ ++Y+
Sbjct: 101 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE- 62
W+A I G + +AGGV+ +T+ +P +YP KPPKV F +HPN+ +G ICL IL E
Sbjct: 43 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 102
Query: 63 -QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
W PA+T+ +++L + LL PNP+ P +K +Y+ ++Y+
Sbjct: 103 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 158
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%)
Query: 8 IIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPA 67
+I P++ Y G FV + YP PPKV +T V+HPNI+ GN+ L+IL+E W P
Sbjct: 60 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPV 119
Query: 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119
LTI+ ++ + L +PNP+DPL E A + + ++ +E + + + +G
Sbjct: 120 LTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIG 171
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 58/99 (58%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+F W TI G + Y + +++ FP YP+ P V F T +HPN+++ GNI LDIL
Sbjct: 59 LFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDIL 118
Query: 61 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCK 99
KE+WS + +LLSI SLL +PN D PL A + K
Sbjct: 119 KEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK 157
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 10 GPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDILKEQWSPAL 68
GP +PY GGV+ V + P YPFK P + F K+FHPNI+ ++G +CLD++ + W+
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 69 TISKVLLSIC-SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
++ + S LL PNP DPL + A M +Y+ + + QKYA
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL-KE 62
W A ++ P+ PY F + I FPP+YPFKPP + F TK++HPN++ NG ICL I+ E
Sbjct: 37 WHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSE 95
Query: 63 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118
W P +VL ++ L+ PN +PL ++A + + + +A +T ++ +
Sbjct: 96 NWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL-KE 62
W A ++ P+ PY F + I FPP+YPFKPP + F TK++HPN++ NG ICL I+ E
Sbjct: 34 WHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSE 92
Query: 63 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119
W P +VL ++ L+ PN +PL ++A + + + +A +T ++ +
Sbjct: 93 NWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 149
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%)
Query: 7 TIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSP 66
I+ P++ Y G + F YP +PPKV K+FHPNI+ GN+CL+IL+E WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 67 ALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSAR 110
AL + ++ + L +PNP+DPL + A + + ++ + R
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 10 GPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPAL 68
GP +PY G +++ + P DYPFK P + F ++ HPN++ +G++CLD++ + W+P
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 69 TISKVL-LSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117
+ + + + LL PNP DPL + AH+ D+ +++ R +A
Sbjct: 106 QLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA 155
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+++W+ I GP ++ Y GG F + FP DYP+ PP F TK++HPNI G++C+ IL
Sbjct: 37 LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISIL 96
Query: 61 -------------KEQWSPALTISKVLLSICSLLTDPN 85
E+W+P + +LLS+ SLL +PN
Sbjct: 97 HPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPN 134
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL 60
+++W+ I GP ++ Y GG F + FP DYP+ PP F TK++HPNI G++C+ IL
Sbjct: 34 LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISIL 93
Query: 61 -------------KEQWSPALTISKVLLSICSLLTDPN 85
E+W+P + +LLS+ SLL +PN
Sbjct: 94 HPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPN 131
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDI 59
M W+ I G +S + G VF +TIHF +Y + PP V F T FHPN++ G C+D
Sbjct: 52 MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDF 111
Query: 60 LK--EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQ 114
L E+W+ T+S +LL++ +L++P ++P+ E A + D++ Y + R + +
Sbjct: 112 LDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLFNR 168
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILK 61
H + P++ Y GG F P Y PPKV TK++HPNI G ICL +L+
Sbjct: 44 LHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLR 103
Query: 62 EQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMCKTDKTKYESSARSWTQ 114
E W+P T+ V+ + SL TD N DDPL E A DK + + + +
Sbjct: 104 EHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIK 163
Query: 115 KYA 117
+YA
Sbjct: 164 RYA 166
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILK 61
H + P++ Y GG F P Y PPKV TK++HPNI G ICL +L+
Sbjct: 44 LHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLR 103
Query: 62 EQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMCKTDKTKYESSARSWTQ 114
E W+P T+ V+ + SL TD N DDPL E A DK + + + +
Sbjct: 104 EHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIK 163
Query: 115 KYA 117
+YA
Sbjct: 164 RYA 166
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAF-KTKVFHPNINS-NGNICLDILK 61
W+A I GP+D+PY F + I P YP PPK++F + + H N+ S G ICL+ILK
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK 109
Query: 62 -EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKT-DKTKYES 107
E+W+P + + ++ LL +P D PL +I ++ + D + Y+
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQG 157
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAF-KTKVFHPNINS-NGNICLDILK 61
W+A I GP+D+PY F + I P YP PPK++F + + H N+ S G ICL+ILK
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 62 -EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKT-DKTKYESSAR 110
E+W+P + + ++ LL +P D PL +I ++ + D + Y+ +
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAF-KTKVFHPNINS-NGNICLDILK 61
W+A I GP+D+PY F + I P YP PPK++F + + H N+ S G ICL+ILK
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 62 -EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKT-DKTKYESSAR 110
E+W+P + + ++ LL +P D PL +I + + D + Y+ +
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQGIVK 160
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVF--HPNINSNGNICLDIL 60
W + G + Y G F + F YPF P+V F + HP++ SNG+ICL IL
Sbjct: 55 QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL 114
Query: 61 KEQWSPALTISKVLLSICSLLT 82
E WSPAL++ V LSI S+L+
Sbjct: 115 TEDWSPALSVQSVCLSIISMLS 136
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKV-FHPNINSNGNICLDILKE 62
W +G ++ YA V+ + I FP DYP KPP V F K H ++ SNG+ICL +L +
Sbjct: 38 WIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGD 97
Query: 63 QWSPALTISKVLLSICSLLT 82
++P+L+IS ++LSI S+L+
Sbjct: 98 DYNPSLSISGLVLSIISMLS 117
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKV-FHPNINSNGNICLDILKE 62
W +G ++ YA V+ + I FP +YP KPP V F K H ++ SNG+ICL +L +
Sbjct: 52 WIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGD 111
Query: 63 QWSPALTISKVLLSICSLLT 82
++P+L+IS ++LSI S+L+
Sbjct: 112 DYNPSLSISGLILSIISMLS 131
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 13/92 (14%)
Query: 8 IIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK-----VFHPNINSNGNICLDIL-- 60
I GP D+PYA G F ++FP DYP PP V +T F+PN+ ++G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 61 -----KEQWSPAL-TISKVLLSICSLLTDPNP 86
+E+W+P + +VL+S+ SL+ P
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 1 MFHWQATIIGPNDSPY--AGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLD 58
+++W + P DS Y AG + +++ F DYP +PP V F T V+ P + G IC
Sbjct: 49 IYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDR 108
Query: 59 ILKEQWSP---ALTISKVLLSICSLLTDPNPDDPLVPEIAHMCK 99
++ + W+P A + K++L DD + PE H +
Sbjct: 109 MVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLE 152
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPN--INSNGNICLD 58
+ W + GP +PY GG + + FP ++PFKPP + T PN N +CL
Sbjct: 43 ILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLS 98
Query: 59 ILK---EQWSPALTISKVLLSICSLLTDPNP 86
I + W+PA ++S +L + S + + P
Sbjct: 99 ITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDI 59
M W TI+GP S + ++ ++I P+YP PPKV F +K+ P +N + G + D
Sbjct: 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98
Query: 60 LK-EQWSPALTISKVLLSICSLLTDP 84
W A T+ +LL + + P
Sbjct: 99 HTLRDWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDI 59
M W TI+GP S + ++ ++I P+YP PPKV F +K+ P +N + G + D
Sbjct: 38 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 97
Query: 60 -LKEQWSPALTISKVLLSICSLLTDP 84
W A T+ +LL + + P
Sbjct: 98 HTLRDWKRAYTMETLLLDLRKEMATP 123
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNI----C 56
+ W IIGP + Y ++ + I P YP PP V F TK+ +NS+ +
Sbjct: 68 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 127
Query: 57 LDILKEQWSPALTISKVLLSICSLL 81
+ +L +W + +I VL + L+
Sbjct: 128 ISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNI----C 56
+ W IIGP + Y ++ + I P YP PP V F TK+ +NS+ +
Sbjct: 58 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 117
Query: 57 LDILKEQWSPALTISKVLLSICSLL 81
+ +L +W + +I VL + L+
Sbjct: 118 ISVLA-KWQNSYSIKVVLQELRRLM 141
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNIC---LDI 59
+W TI G + + ++ +TI +YP PP V F TK+ +++ G + L I
Sbjct: 60 NWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHI 119
Query: 60 LKEQWSPALTISKVLLSI 77
LK W+ TI +L+S+
Sbjct: 120 LK-NWNRNYTIETILISL 136
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNIC---L 57
+ +W TI G + + ++ +TI +YP PP V F TK+ +++ G + L
Sbjct: 54 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNL 113
Query: 58 DILKEQWSPALTISKVLLSI 77
ILK W+ TI +L+S+
Sbjct: 114 HILK-NWNRNYTIETILISL 132
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNI----C 56
+ W I+GP + Y ++ + I P YP PP V F TK+ +NS+ +
Sbjct: 40 LTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 99
Query: 57 LDILKEQWSPALTISKVLLSICSLL 81
+ +L +W + +I VL + L+
Sbjct: 100 ISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNIC---- 56
+ W IIGP + Y ++ + + P YP PP V F TK+ IN++ +
Sbjct: 38 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 97
Query: 57 LDILKEQWSPALTISKVLLSICSLL 81
+ +L +W + +I VL + L+
Sbjct: 98 IPVLA-KWQNSYSIKVVLQELRRLM 121
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNIC---- 56
+ W IIGP + Y ++ + + P YP PP V F TK+ IN++ +
Sbjct: 37 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 96
Query: 57 LDILKEQWSPALTISKVLLSICSLL 81
+ +L +W + +I VL + L+
Sbjct: 97 IPVLA-KWQNSYSIKVVLQELRRLM 120
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNIC---- 56
+ W IIGP + Y ++ + + P YP PP V F TK+ IN++ +
Sbjct: 43 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 102
Query: 57 LDILKEQWSPALTISKVLLSICSLL 81
+ +L +W + +I VL + L+
Sbjct: 103 IPVLA-KWQNSYSIKVVLQELRRLM 126
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNIC---- 56
+ W IIGP + Y ++ + + P YP PP V F TK+ IN++ +
Sbjct: 48 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 107
Query: 57 LDILKEQWSPALTISKVLLSICSLL 81
+ +L +W + +I VL + L+
Sbjct: 108 IPVLA-KWQNSYSIKVVLQELRRLM 131
>pdb|3R3Q|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain
pdb|3R42|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain In Complex
With A Vps27 Psdp Peptide
Length = 162
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 23 VTIHFPPDYPFKPPKVAFKTKVFHPN-----------INSNGNICLDILKEQWSP-ALTI 70
V + P YP KPP ++ + F N I+SNG I L IL W P A+ +
Sbjct: 85 VIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDPAAMNL 143
Query: 71 SKVLLSICSLLTDPNPD 87
V+ + SLL +P D
Sbjct: 144 IMVVQELMSLLHEPPQD 160
>pdb|1UZX|A Chain A, A Complex Of The Vps23 Uev With Ubiquitin
Length = 169
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 28 PPDYPFKPPKVAFKTKVFHPN-----------INSNGNICLDILKEQWSP-ALTISKVLL 75
P YP KPP ++ + F N I+SNG I L IL W P A + V+
Sbjct: 96 PSXYPVKPPFISINLENFDXNTISSSLPIQEYIDSNGWIALPIL-HCWDPAAXNLIXVVQ 154
Query: 76 SICSLLTDPNPD 87
+ SLL +P D
Sbjct: 155 ELXSLLHEPPQD 166
>pdb|2QP2|A Chain A, Structure Of A Macpf/perforin-like Protein
Length = 511
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 47 PNINSNGNICLDILKEQWSPAL 68
N+NS GNICL + K ++ P +
Sbjct: 388 ENLNSKGNICLFMHKAKYDPNI 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,281,696
Number of Sequences: 62578
Number of extensions: 167051
Number of successful extensions: 516
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 123
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)