Query 033452
Match_columns 119
No_of_seqs 126 out of 1074
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 2E-51 4.4E-56 273.0 12.9 119 1-119 30-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.3E-49 2.8E-54 269.1 13.6 118 1-118 35-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 1.7E-46 3.8E-51 255.5 14.8 119 1-119 31-149 (152)
4 PLN00172 ubiquitin conjugating 100.0 7.1E-46 1.5E-50 251.3 14.6 118 1-118 30-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 2.1E-45 4.6E-50 238.9 12.4 116 1-116 33-148 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 1.5E-43 3.2E-48 236.2 12.9 116 1-116 35-163 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 2.1E-43 4.5E-48 232.5 12.2 118 1-118 38-157 (158)
8 KOG0418 Ubiquitin-protein liga 100.0 2E-43 4.3E-48 241.7 11.4 118 2-119 36-154 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 1.6E-40 3.6E-45 223.2 12.7 113 1-113 27-140 (140)
10 smart00212 UBCc Ubiquitin-conj 100.0 9.5E-40 2.1E-44 220.7 14.4 117 1-117 28-145 (145)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 2.5E-39 5.4E-44 217.8 12.9 113 1-113 28-141 (141)
12 KOG0426 Ubiquitin-protein liga 100.0 6.5E-38 1.4E-42 204.2 11.6 117 1-117 34-163 (165)
13 KOG0421 Ubiquitin-protein liga 100.0 6.8E-38 1.5E-42 206.6 9.8 115 1-116 58-172 (175)
14 KOG0416 Ubiquitin-protein liga 100.0 1.8E-37 3.9E-42 209.5 10.1 118 1-118 29-148 (189)
15 KOG0422 Ubiquitin-protein liga 100.0 1.8E-36 3.9E-41 198.8 13.0 117 1-118 32-149 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 4.4E-35 9.5E-40 198.2 10.4 114 3-117 61-174 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 8.8E-33 1.9E-37 187.5 5.7 115 4-118 42-156 (223)
18 KOG0427 Ubiquitin conjugating 99.9 1.9E-24 4.1E-29 141.0 8.3 83 1-83 43-126 (161)
19 KOG0429 Ubiquitin-conjugating 99.9 1E-22 2.3E-27 143.0 11.3 113 2-115 49-167 (258)
20 KOG0894 Ubiquitin-protein liga 99.9 2.7E-21 5.9E-26 135.5 11.9 85 1-87 34-121 (244)
21 KOG0428 Non-canonical ubiquiti 99.7 9.3E-18 2E-22 120.0 8.3 107 1-115 39-151 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 1.9E-15 4.2E-20 124.9 6.3 80 5-84 884-972 (1101)
23 KOG0896 Ubiquitin-conjugating 99.6 1.4E-14 2.9E-19 95.1 7.0 83 1-83 38-123 (138)
24 KOG0895 Ubiquitin-conjugating 99.4 1.9E-12 4.2E-17 107.5 8.3 83 2-84 312-405 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 99.0 3.7E-09 8E-14 70.5 7.8 67 17-83 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.8 1.6E-08 3.4E-13 64.9 6.1 91 21-112 13-109 (122)
27 PF05743 UEV: UEV domain; Int 98.7 7E-08 1.5E-12 63.4 6.7 68 15-83 42-117 (121)
28 KOG2391 Vacuolar sorting prote 97.9 5.3E-05 1.1E-09 57.2 6.5 75 10-85 57-139 (365)
29 PF14457 Prok-E2_A: Prokaryoti 96.0 0.01 2.2E-07 40.9 3.8 61 23-83 57-126 (162)
30 PF08694 UFC1: Ubiquitin-fold 96.0 0.015 3.3E-07 39.1 4.4 54 21-74 77-135 (161)
31 PF14462 Prok-E2_E: Prokaryoti 95.9 0.058 1.2E-06 35.5 6.9 70 11-82 34-120 (122)
32 PF05773 RWD: RWD domain; Int 95.3 0.044 9.6E-07 34.4 4.6 31 13-43 43-73 (113)
33 smart00591 RWD domain in RING 95.0 0.091 2E-06 32.7 5.4 27 17-43 39-65 (107)
34 PF06113 BRE: Brain and reprod 87.6 2 4.4E-05 32.9 5.8 58 15-78 61-121 (333)
35 TIGR03737 PRTRC_B PRTRC system 85.0 1.7 3.7E-05 31.6 4.0 42 42-87 131-176 (228)
36 PF14460 Prok-E2_D: Prokaryoti 84.4 1.8 3.9E-05 30.0 3.9 46 41-89 89-137 (175)
37 KOG3357 Uncharacterized conser 84.3 1.8 3.8E-05 28.9 3.5 66 9-74 58-138 (167)
38 KOG4018 Uncharacterized conser 72.9 3.6 7.9E-05 29.6 2.5 21 20-40 50-70 (215)
39 KOG0177 20S proteasome, regula 69.6 8.1 0.00018 27.4 3.6 63 21-83 98-166 (200)
40 PF09765 WD-3: WD-repeat regio 69.3 3.9 8.4E-05 30.8 2.2 50 19-82 137-187 (291)
41 cd00421 intradiol_dioxygenase 65.7 11 0.00024 25.2 3.6 26 17-42 64-90 (146)
42 cd03457 intradiol_dioxygenase_ 64.7 11 0.00024 26.5 3.6 26 17-42 85-110 (188)
43 cd07981 TAF12 TATA Binding Pro 63.9 27 0.00059 20.4 4.7 42 76-117 6-47 (72)
44 cd03459 3,4-PCD Protocatechuat 58.4 18 0.00038 24.8 3.6 26 17-42 71-101 (158)
45 PF03847 TFIID_20kDa: Transcri 57.4 37 0.0008 19.8 4.7 42 76-117 4-45 (68)
46 KOG2851 Eukaryotic-type DNA pr 56.8 27 0.00057 27.4 4.6 63 48-111 331-404 (412)
47 KOG0309 Conserved WD40 repeat- 52.2 37 0.0008 29.4 5.0 37 6-43 453-491 (1081)
48 PF12018 DUF3508: Domain of un 47.6 29 0.00064 25.8 3.6 30 88-117 237-266 (281)
49 KOG4445 Uncharacterized conser 47.4 26 0.00057 26.8 3.3 25 19-43 45-69 (368)
50 cd05845 Ig2_L1-CAM_like Second 45.7 55 0.0012 20.3 4.1 26 16-43 16-41 (95)
51 cd01145 TroA_c Periplasmic bin 45.4 30 0.00066 24.2 3.3 47 64-116 111-157 (203)
52 PF03366 YEATS: YEATS family; 44.5 71 0.0015 19.4 5.1 40 2-43 2-41 (84)
53 cd01019 ZnuA Zinc binding prot 44.2 43 0.00093 24.8 4.1 48 64-117 124-171 (286)
54 TIGR02423 protocat_alph protoc 43.8 38 0.00082 24.0 3.5 25 17-41 95-124 (193)
55 PF09943 DUF2175: Uncharacteri 43.8 24 0.00052 22.5 2.2 20 2-23 1-20 (101)
56 PF06113 BRE: Brain and reprod 42.2 43 0.00094 25.8 3.8 25 18-42 305-329 (333)
57 cd03463 3,4-PCD_alpha Protocat 41.7 43 0.00094 23.5 3.5 25 17-41 91-120 (185)
58 PF13950 Epimerase_Csub: UDP-g 41.6 32 0.00069 19.6 2.4 20 62-81 36-55 (62)
59 PF12652 CotJB: CotJB protein; 41.6 64 0.0014 19.4 3.8 31 87-117 24-54 (78)
60 KOG0662 Cyclin-dependent kinas 40.5 32 0.00069 24.8 2.7 54 33-86 167-224 (292)
61 KOG1047 Bifunctional leukotrie 40.5 31 0.00067 28.6 2.9 29 14-43 248-279 (613)
62 PF11333 DUF3135: Protein of u 40.4 67 0.0014 19.6 3.8 23 93-115 8-30 (83)
63 KOG3696 Aspartyl beta-hydroxyl 38.7 31 0.00068 26.4 2.5 26 29-54 303-328 (334)
64 cd01020 TroA_b Metal binding p 38.4 55 0.0012 23.9 3.8 47 64-116 98-144 (264)
65 PF01175 Urocanase: Urocanase; 38.0 58 0.0013 26.7 4.1 26 92-117 272-297 (546)
66 PF09280 XPC-binding: XPC-bind 37.8 55 0.0012 18.6 3.0 21 90-110 34-54 (59)
67 cd01018 ZntC Metal binding pro 37.5 49 0.0011 24.1 3.4 47 64-116 115-161 (266)
68 TIGR01228 hutU urocanate hydra 34.7 67 0.0015 26.3 3.9 26 92-117 273-298 (545)
69 PRK05414 urocanate hydratase; 33.9 70 0.0015 26.3 3.9 26 92-117 282-307 (556)
70 COG2847 Copper(I)-binding prot 33.4 94 0.002 21.2 4.0 27 4-30 105-131 (151)
71 PF09606 Med15: ARC105 or Med1 33.0 14 0.00031 31.7 0.0 22 22-43 717-738 (799)
72 TIGR02439 catechol_proteo cate 32.9 67 0.0015 24.2 3.5 25 17-41 179-221 (285)
73 COG3866 PelB Pectate lyase [Ca 30.9 98 0.0021 23.9 4.1 40 3-42 198-240 (345)
74 PRK09545 znuA high-affinity zi 30.4 99 0.0021 23.3 4.1 47 64-116 148-194 (311)
75 COG2819 Predicted hydrolase of 30.1 90 0.002 23.3 3.8 30 13-42 15-46 (264)
76 cd03461 1,2-HQD Hydroxyquinol 30.0 80 0.0017 23.7 3.5 25 17-41 171-213 (277)
77 PRK11700 hypothetical protein; 30.0 2E+02 0.0044 20.3 6.3 60 11-76 101-184 (187)
78 PF08369 PCP_red: Proto-chloro 29.5 96 0.0021 16.4 3.3 26 92-117 3-28 (45)
79 cd01016 TroA Metal binding pro 29.4 76 0.0017 23.3 3.3 47 64-116 104-150 (276)
80 smart00545 JmjN Small domain f 29.2 66 0.0014 17.0 2.2 19 100-118 13-31 (42)
81 cd03460 1,2-CTD Catechol 1,2 d 28.7 88 0.0019 23.6 3.5 25 17-41 175-217 (282)
82 smart00803 TAF TATA box bindin 28.2 1.2E+02 0.0027 17.3 3.5 29 89-117 19-47 (65)
83 cd01137 PsaA Metal binding pro 27.5 90 0.002 23.1 3.5 47 64-116 120-166 (287)
84 PF02563 Poly_export: Polysacc 26.2 1.1E+02 0.0025 18.0 3.2 36 48-83 34-69 (82)
85 COG4847 Uncharacterized protei 25.9 79 0.0017 20.0 2.4 26 91-116 75-100 (103)
86 TIGR02438 catachol_actin catec 25.6 1.1E+02 0.0024 23.1 3.6 25 17-41 183-225 (281)
87 TIGR02465 chlorocat_1_2 chloro 25.0 1.2E+02 0.0026 22.4 3.6 25 17-41 149-191 (246)
88 cd03464 3,4-PCD_beta Protocate 25.0 1.2E+02 0.0025 22.0 3.5 25 17-41 121-152 (220)
89 KOG4064 Cysteine dioxygenase C 24.7 1.8E+02 0.0038 20.2 4.1 53 64-116 7-60 (196)
90 PF14798 Ca_hom_mod: Calcium h 24.3 59 0.0013 24.0 1.9 33 86-118 205-238 (251)
91 TIGR02422 protocat_beta protoc 24.3 1.2E+02 0.0026 21.9 3.5 25 17-41 116-147 (220)
92 PF00779 BTK: BTK motif; Inte 24.1 29 0.00062 17.3 0.2 15 44-58 2-17 (32)
93 PF11745 DUF3304: Protein of u 23.9 32 0.0007 22.1 0.5 20 52-71 50-69 (118)
94 PF15572 Imm26: Immunity prote 23.5 1.1E+02 0.0023 19.3 2.7 67 11-82 7-86 (96)
95 cd01017 AdcA Metal binding pro 23.2 1.2E+02 0.0026 22.3 3.4 47 64-116 116-162 (282)
96 PF01297 TroA: Periplasmic sol 22.8 87 0.0019 22.5 2.6 47 64-116 95-141 (256)
97 PF01774 UreD: UreD urease acc 21.3 1.1E+02 0.0023 21.6 2.7 26 5-30 1-26 (209)
98 PRK14052 effector protein; Pro 20.8 26 0.00055 27.1 -0.6 30 45-74 347-383 (387)
99 PF02375 JmjN: jmjN domain; I 20.2 48 0.001 16.7 0.6 18 100-117 11-28 (34)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-51 Score=272.99 Aligned_cols=119 Identities=77% Similarity=1.405 Sum_probs=117.5
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+.+|+||+|+|.++|+|+.+|..||.+|+++
T Consensus 30 l~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk~~WsPAl~i~~VllsI~sL 109 (148)
T KOG0417|consen 30 LFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILKDQWSPALTISKVLLSICSL 109 (148)
T ss_pred eeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhhccCChhhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|.+||+++|++.++|++|+.|+.+|+++||+||.||||+
T Consensus 110 L~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 110 LSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred hcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999986
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-49 Score=269.08 Aligned_cols=118 Identities=58% Similarity=1.170 Sum_probs=116.4
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|++.|.||++||||||+|++.|.||++||++||+|+|.++||||||+++|+||+++|.+.|+|+++|.+||.+|+++
T Consensus 35 l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~sl 114 (153)
T COG5078 35 LFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSL 114 (153)
T ss_pred ceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
|.+||.++|+|.|||++|++|+++|.++||+++++||.
T Consensus 115 L~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 115 LLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred HcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.7e-46 Score=255.47 Aligned_cols=119 Identities=49% Similarity=0.945 Sum_probs=116.7
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+++|.||+++|.++|+|++|+.+||.+|+++
T Consensus 31 ~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~l 110 (152)
T PTZ00390 31 YRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQAL 110 (152)
T ss_pred ccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCcccCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|.+|++++|+|.+||++|++|++.|.++||+|+++||++
T Consensus 111 l~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 111 LSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred HhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999974
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=7.1e-46 Score=251.34 Aligned_cols=118 Identities=74% Similarity=1.364 Sum_probs=115.9
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|+||||+.+|.||+++|.++|+|++|+.+||.+|+++
T Consensus 30 l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~~~W~p~~ti~~il~~i~~l 109 (147)
T PLN00172 30 LFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSL 109 (147)
T ss_pred hheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCcCCCCCcCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
|.+|++++|+|.+||++|.+|+++|.++||+|+++||.
T Consensus 110 l~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 110 LTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred HhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999984
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-45 Score=238.85 Aligned_cols=116 Identities=43% Similarity=0.920 Sum_probs=113.6
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|+.|+++|+||.+|||+||+|++.|.|+++||.+||.|+|.+.+||||||++|.+|+|+|...|+|++++.+||.+||+|
T Consensus 33 iM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQsl 112 (152)
T KOG0419|consen 33 IMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSL 112 (152)
T ss_pred eeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|.+|++++|+|.+||.+|++|+++|.+++|..+.+.
T Consensus 113 L~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 113 LNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred hcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998764
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-43 Score=236.20 Aligned_cols=116 Identities=37% Similarity=0.862 Sum_probs=112.2
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccc-------------ccCCCc
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILK-------------EQWSPA 67 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~-------------~~W~p~ 67 (119)
+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.+.|||||||++|.+|+++|- +.|.|.
T Consensus 35 if~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv 114 (171)
T KOG0425|consen 35 IFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPV 114 (171)
T ss_pred eeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCc
Confidence 5899999999999999999999999999999999999999999999999999999999982 469999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 68 ~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
.|+++||++|.+||.+||.++|+|.|||+.|++|+++|+++++++|++.
T Consensus 115 ~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 115 QTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred cchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999864
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-43 Score=232.50 Aligned_cols=118 Identities=40% Similarity=0.858 Sum_probs=115.3
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccccc--CCCcccHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQ--WSPALTISKVLLSIC 78 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~--W~p~~~l~~il~~i~ 78 (119)
|+.|+|.|.|++||+||||.|.+++.||++||.+||+++|.+++||||||++|.|||++|.++ |+|++||.+||..||
T Consensus 38 l~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIq 117 (158)
T KOG0424|consen 38 LMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQ 117 (158)
T ss_pred eEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999755 999999999999999
Q ss_pred HhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 79 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
+||.+||+.+|+|.||...|.+|+.+|+++||.++++||.
T Consensus 118 dLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 118 DLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred HHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999985
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-43 Score=241.75 Aligned_cols=118 Identities=47% Similarity=0.902 Sum_probs=115.0
Q ss_pred eeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccccccCCCcccHHHHHHHHHHh
Q 033452 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 2 ~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
.+.++.|.||+|||||||+|.+.|++|++||++||+|+|.|+||||||++ +|.||+|++.+.|++++||+.+|++||++
T Consensus 36 ~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQal 115 (200)
T KOG0418|consen 36 KEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQAL 115 (200)
T ss_pred hhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|..|++.+|.+.+.|++|.+|++.|.+.||.|+..||+|
T Consensus 116 L~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 116 LCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred HcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999986
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.6e-40 Score=223.22 Aligned_cols=113 Identities=57% Similarity=1.152 Sum_probs=104.0
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccc-cCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE-QWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~-~W~p~~~l~~il~~i~~ 79 (119)
+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|+||||+.+|+||+++|.. +|+|++++.+||.+|++
T Consensus 27 ~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ 106 (140)
T PF00179_consen 27 LFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNPESWSPSYTIESILLSIQS 106 (140)
T ss_dssp TTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHHHH
T ss_pred hheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhhhcccCCcccccccHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999974 59999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWT 113 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 113 (119)
+|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 107 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 107 LLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp HHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred HHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999984
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=9.5e-40 Score=220.73 Aligned_cols=117 Identities=58% Similarity=1.172 Sum_probs=114.3
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccc-ccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILK-EQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~-~~W~p~~~l~~il~~i~~ 79 (119)
+++|+++|.||++|||+||+|++.|.||++||.+||+|+|.++++||||+++|.||++.+. ++|+|++++.+||.+|++
T Consensus 28 ~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~i~~ 107 (145)
T smart00212 28 LLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQEKWSPATTLETVLLSIQS 107 (145)
T ss_pred hheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCCCCCCCCCcHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
+|.+|+.++++|.+||++|++|++.|+++|++++.|++
T Consensus 108 ~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 108 LLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred HHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999985
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.5e-39 Score=217.76 Aligned_cols=113 Identities=55% Similarity=1.119 Sum_probs=109.9
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccccc-CCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQ-WSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~-W~p~~~l~~il~~i~~ 79 (119)
+++|+++|.||++|||+||+|+++|.||++||.+||+|+|.++++||||+.+|.||++++... |+|++++.+||.+|++
T Consensus 28 ~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~~~W~p~~~l~~il~~i~~ 107 (141)
T cd00195 28 LLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQS 107 (141)
T ss_pred hhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCCCCcCCcCcHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999876 9999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWT 113 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 113 (119)
+|.+|+.++++|.+||++|++|+++|+++||+|+
T Consensus 108 ~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 108 LLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred HHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999974
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-38 Score=204.18 Aligned_cols=117 Identities=38% Similarity=0.859 Sum_probs=112.7
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccc-------------ccCCCc
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILK-------------EQWSPA 67 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~-------------~~W~p~ 67 (119)
+++|.|.|.||++|+|+||.|..++.||.+||.+||+++|...+|||||+++|+||+++|- +.|+|.
T Consensus 34 fF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPV 113 (165)
T KOG0426|consen 34 FFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPV 113 (165)
T ss_pred eeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChH
Confidence 4799999999999999999999999999999999999999999999999999999999882 469999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 68 ~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.+++.||.++.+||.+||-++++|.+|+.++++|+++|.+.|+..++|.-
T Consensus 114 QSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 114 QSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKTL 163 (165)
T ss_pred HHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999864
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-38 Score=206.63 Aligned_cols=115 Identities=42% Similarity=0.861 Sum_probs=111.6
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|+.|.++|.||++|+|+|-.|++.+.||.+||++||.|.|+|+.||||||..|.||+|+|.+.|+..++++.||.+||++
T Consensus 58 lf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSL 137 (175)
T KOG0421|consen 58 LFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSL 137 (175)
T ss_pred eeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-+||.++|+|..||+++. |.++|++.+....++.
T Consensus 138 LGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 138 LGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred hCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 9999999999999999998 9999999998887653
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-37 Score=209.53 Aligned_cols=118 Identities=40% Similarity=0.856 Sum_probs=112.8
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccccccCCCcccHHHHHHHH-H
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSI-C 78 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~~l~~il~~i-~ 78 (119)
|.+.++.+.||++|||+||+++++|.+|++||++.|.|.|.++||||||+. +|.||++.+..-|+|.+.+..|+..+ -
T Consensus 29 m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLP 108 (189)
T KOG0416|consen 29 MQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLP 108 (189)
T ss_pred ccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhH
Confidence 457889999999999999999999999999999999999999999999997 99999999999999999999998654 6
Q ss_pred HhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 79 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
.||..||+.+|+|.+||.+|.+++++|++++|++++|||+
T Consensus 109 QLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 109 QLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred HHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999996
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=198.77 Aligned_cols=117 Identities=40% Similarity=0.916 Sum_probs=113.7
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccc-cccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL-KEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l-~~~W~p~~~l~~il~~i~~ 79 (119)
++.|++.|. |.+-||..|.|+++|.||.+|||.||.|.|.|.|||||||+.|.+|+.++ .++|.|+++..+||+.|..
T Consensus 32 ll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqVlqaLi~ 110 (153)
T KOG0422|consen 32 LLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQVLQALIA 110 (153)
T ss_pred ceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHHHHHHHHH
Confidence 578999999 78999999999999999999999999999999999999999999999998 4899999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
++.+|+++.|++.|+|..|.+|+..|.++|.++++||+.
T Consensus 111 liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 111 LINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred HhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999985
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-35 Score=198.21 Aligned_cols=114 Identities=38% Similarity=0.783 Sum_probs=109.5
Q ss_pred eeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHhhc
Q 033452 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLT 82 (119)
Q Consensus 3 ~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ll~ 82 (119)
+.+.+|. |.++.|.||.|.|++.+|+.||+.||+|.+.|.+||||||.+|.||+++|+++|+|+.+|.+|+.+|+.+|.
T Consensus 61 ~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~ 139 (184)
T KOG0420|consen 61 EFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFL 139 (184)
T ss_pred eEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhc
Confidence 3667777 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 83 DPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 83 ~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
+|+++||+|.|||+++++|++.|..+||.....++
T Consensus 140 epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 140 EPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred cCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999887665
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.8e-33 Score=187.47 Aligned_cols=115 Identities=43% Similarity=0.781 Sum_probs=111.7
Q ss_pred eEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHhhcC
Q 033452 4 WQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTD 83 (119)
Q Consensus 4 w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ll~~ 83 (119)
..+.|.||.||||++|.|+..+.+..+||.+||+-+|+|+||||||-.+|+||.+.|..+|+|+..|+.||..|.++|..
T Consensus 42 iqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~ 121 (223)
T KOG0423|consen 42 IQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIE 121 (223)
T ss_pred HHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhhcccCcccchhhHhhhhheeeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 84 PNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 84 p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
|++++++|.+|..+..+|.++|.++||-++.-+|+
T Consensus 122 PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~ 156 (223)
T KOG0423|consen 122 PNPESALNEEAGKMLLENYDEYARRARLYTEIHAK 156 (223)
T ss_pred CChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999988875
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-24 Score=140.96 Aligned_cols=83 Identities=40% Similarity=0.842 Sum_probs=79.7
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-ccccccCCCceecccccccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKV-FHPNINSNGNICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ 79 (119)
|.+|.+.+.|-+||.|+|.+|.+.+.||+.||++.|.|.|..++ -||+|+.||.||+++|.++|+|++++.+|.++|.+
T Consensus 43 lqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlS 122 (161)
T KOG0427|consen 43 LQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILS 122 (161)
T ss_pred hheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHH
Confidence 46899999999999999999999999999999999999999765 69999999999999999999999999999999999
Q ss_pred hhcC
Q 033452 80 LLTD 83 (119)
Q Consensus 80 ll~~ 83 (119)
||++
T Consensus 123 MLSS 126 (161)
T KOG0427|consen 123 MLSS 126 (161)
T ss_pred HHcc
Confidence 9985
No 19
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1e-22 Score=143.03 Aligned_cols=113 Identities=27% Similarity=0.509 Sum_probs=104.1
Q ss_pred eeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCC--CCCeeEEecccccccccC-CCceecccccccCCCcc-cHHHHHHHH
Q 033452 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPF--KPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPAL-TISKVLLSI 77 (119)
Q Consensus 2 ~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~--~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~-~l~~il~~i 77 (119)
+.|-++|++ ..+.|.||+|+|.|.+|++||. +.|+|.|.++++||+|.+ ++.+|+......|+-.- +|+.+|..+
T Consensus 49 l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~yl 127 (258)
T KOG0429|consen 49 LLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYL 127 (258)
T ss_pred ceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhhhhccccHHHHHHHHH
Confidence 579999996 5678999999999999999995 899999999999999997 99999998877799765 999999999
Q ss_pred HHhhcCCCCCCC--ccHHHHHHHHhCHHHHHHHHHHHHHH
Q 033452 78 CSLLTDPNPDDP--LVPEIAHMCKTDKTKYESSARSWTQK 115 (119)
Q Consensus 78 ~~ll~~p~~~~~--~n~~aa~~~~~~~~~f~~~~~~~~~k 115 (119)
|..|.+|+-..+ .|++|+.+|.+++++|.++|+++++.
T Consensus 128 qriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 128 QRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred HHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999997755 59999999999999999999999875
No 20
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.7e-21 Score=135.48 Aligned_cols=85 Identities=34% Similarity=0.870 Sum_probs=76.7
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccc---cccCCCcccHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL---KEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l---~~~W~p~~~l~~il~~i 77 (119)
|++||.+|.||++|||+||.|+-+|.||.+||++||.|+.+|+ +..+-.+-++|+++- .+.|.|++++.+||..|
T Consensus 34 ILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktntRLCLSiSDfHPdsWNP~WsVStILtGL 111 (244)
T KOG0894|consen 34 ILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGL 111 (244)
T ss_pred eeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecCceEEEeccccCcCcCCCcccHHHHHHHH
Confidence 6899999999999999999999999999999999999999998 556666889999776 58999999999999999
Q ss_pred HHhhcCCCCC
Q 033452 78 CSLLTDPNPD 87 (119)
Q Consensus 78 ~~ll~~p~~~ 87 (119)
.++|.+-.+.
T Consensus 112 lSFM~e~~pT 121 (244)
T KOG0894|consen 112 LSFMTEDSPT 121 (244)
T ss_pred HHHHhcCCCc
Confidence 9999875443
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9.3e-18 Score=119.97 Aligned_cols=107 Identities=30% Similarity=0.659 Sum_probs=85.4
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccc---cccCCCcccHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL---KEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l---~~~W~p~~~l~~il~~i 77 (119)
|++||.+|+||.||-|+||+|+.+|.||.+||++||.+..+|+ +..+.-+.+||+++. .+.|.|+++++..|..|
T Consensus 39 lFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAl 116 (314)
T KOG0428|consen 39 LFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVNKKICLSISGYHPETWQPSWSIRTALLAL 116 (314)
T ss_pred eeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeCceEEEEecCCCccccCcchhHHHHHHHH
Confidence 6899999999999999999999999999999999999999987 556666889999876 47899999999999999
Q ss_pred HHhhc-CCCCCC-CccHHHHHHH-HhCHHHHHHHHHHHHHH
Q 033452 78 CSLLT-DPNPDD-PLVPEIAHMC-KTDKTKYESSARSWTQK 115 (119)
Q Consensus 78 ~~ll~-~p~~~~-~~n~~aa~~~-~~~~~~f~~~~~~~~~k 115 (119)
..+|- .|+-.- -+ .| .+.++...++.++|..|
T Consensus 117 IgFmPt~p~GAlGSl------DYpp~ERr~LAkkS~e~~ck 151 (314)
T KOG0428|consen 117 IGFMPTKPEGALGSL------DYPPEERRALAKKSQEFCCK 151 (314)
T ss_pred HccccCCCCCccccC------cCCHHHHHHHHHhhcccCcc
Confidence 88876 343210 01 12 34556666666666554
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.9e-15 Score=124.92 Aligned_cols=80 Identities=38% Similarity=0.853 Sum_probs=73.2
Q ss_pred EEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc--cccccccCCCceeccccc-------ccCCCcccHHHHHH
Q 033452 5 QATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK--VFHPNINSNGNICLDILK-------EQWSPALTISKVLL 75 (119)
Q Consensus 5 ~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~--i~Hpnv~~~g~ic~~~l~-------~~W~p~~~l~~il~ 75 (119)
+++|.|+.||||..|.|.|.+.||++||.+||.+...+. .++||.|.+|++|+++|. +.|+|+.++.++|.
T Consensus 884 ~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~ 963 (1101)
T KOG0895|consen 884 RAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLV 963 (1101)
T ss_pred HHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHH
Confidence 467899999999999999999999999999999999863 679999999999999993 56999999999999
Q ss_pred HHHHhhcCC
Q 033452 76 SICSLLTDP 84 (119)
Q Consensus 76 ~i~~ll~~p 84 (119)
+||.|+...
T Consensus 964 s~q~l~l~~ 972 (1101)
T KOG0895|consen 964 SIQGLVLNE 972 (1101)
T ss_pred Hhhhhhccc
Confidence 999998753
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-14 Score=95.11 Aligned_cols=83 Identities=30% Similarity=0.554 Sum_probs=73.8
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccc--cccCCCcccHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDIL--KEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l--~~~W~p~~~l~~il~~i 77 (119)
|.+|.+.|.||+.|+||+.+|.++|.+..+||..||+|+|.+++--.-|+. +|.+.-..+ ..+|.-.+++..+|.++
T Consensus 38 l~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~l 117 (138)
T KOG0896|consen 38 LTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQL 117 (138)
T ss_pred EeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhh
Confidence 468999999999999999999999999999999999999999998888886 777765433 38999999999999999
Q ss_pred HHhhcC
Q 033452 78 CSLLTD 83 (119)
Q Consensus 78 ~~ll~~ 83 (119)
+.++..
T Consensus 118 r~~m~~ 123 (138)
T KOG0896|consen 118 RKEMMS 123 (138)
T ss_pred hHHHHH
Confidence 876553
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.9e-12 Score=107.45 Aligned_cols=83 Identities=40% Similarity=0.820 Sum_probs=75.8
Q ss_pred eeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc---cccccccCCCceeccccc-------ccCCCc-ccH
Q 033452 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK---VFHPNINSNGNICLDILK-------EQWSPA-LTI 70 (119)
Q Consensus 2 ~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~---i~Hpnv~~~g~ic~~~l~-------~~W~p~-~~l 70 (119)
...++.|.||.||||++|+|.|.|.||..||..||.+.+.+. .+.||.|.+|+||+++|. +.|+|. .+|
T Consensus 312 d~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl 391 (1101)
T KOG0895|consen 312 DLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSL 391 (1101)
T ss_pred ceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccch
Confidence 356899999999999999999999999999999999999976 679999999999999882 679998 799
Q ss_pred HHHHHHHHHhhcCC
Q 033452 71 SKVLLSICSLLTDP 84 (119)
Q Consensus 71 ~~il~~i~~ll~~p 84 (119)
.++|.+||.++.+.
T Consensus 392 ~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 392 LQVLESIQGLILNE 405 (1101)
T ss_pred hhhhhhhhhhhccc
Confidence 99999999998864
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.97 E-value=3.7e-09 Score=70.47 Aligned_cols=67 Identities=33% Similarity=0.790 Sum_probs=61.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEeccc---ccccccCCCceec---ccccccCCCcccHHHHHHHHHHhhcC
Q 033452 17 AGGVFVVTIHFPPDYPFKPPKVAFKTKV---FHPNINSNGNICL---DILKEQWSPALTISKVLLSICSLLTD 83 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~~pP~v~f~t~i---~Hpnv~~~g~ic~---~~l~~~W~p~~~l~~il~~i~~ll~~ 83 (119)
.|+.+.++|.+|+.||..||.|....+- +-|||+.+|.+|+ ....+.|.|.-.+.++|.+++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999988644 6899999999999 77779999999999999999999984
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.6e-08 Score=64.94 Aligned_cols=91 Identities=19% Similarity=0.413 Sum_probs=67.4
Q ss_pred EEEEEEcCCCCCCCCCeeEEeccc-ccccccCCCceeccccc-ccCCCcccHHHHHHHHHHhhcCCCC--CCCccHHHHH
Q 033452 21 FVVTIHFPPDYPFKPPKVAFKTKV-FHPNINSNGNICLDILK-EQWSPALTISKVLLSICSLLTDPNP--DDPLVPEIAH 96 (119)
Q Consensus 21 f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~g~ic~~~l~-~~W~p~~~l~~il~~i~~ll~~p~~--~~~~n~~aa~ 96 (119)
.-+.+.|+++||+.||.++-..++ --..|-.+|.||++++. +.|+.+++++.++++|..++..... ..+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 346678999999999999887553 34455579999999994 7899999999999999999997653 455554433
Q ss_pred HHH--hCHHHHHHHHHHH
Q 033452 97 MCK--TDKTKYESSARSW 112 (119)
Q Consensus 97 ~~~--~~~~~f~~~~~~~ 112 (119)
+|. +.-+.|++.++..
T Consensus 92 ~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 443 3334566666543
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.70 E-value=7e-08 Score=63.44 Aligned_cols=68 Identities=24% Similarity=0.651 Sum_probs=50.0
Q ss_pred CCCCcEEE--EEEEcCCCCCCCCCeeEEeccc-----ccccccCCCceecccccccCCC-cccHHHHHHHHHHhhcC
Q 033452 15 PYAGGVFV--VTIHFPPDYPFKPPKVAFKTKV-----FHPNINSNGNICLDILKEQWSP-ALTISKVLLSICSLLTD 83 (119)
Q Consensus 15 ~y~g~~f~--~~i~fp~~yP~~pP~v~f~t~i-----~Hpnv~~~g~ic~~~l~~~W~p-~~~l~~il~~i~~ll~~ 83 (119)
.|.|.+|. +.|.+|++||.+||.+...... -+.+||++|+|.++.| ++|.+ ..+|.+++..+.+.|.+
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHHHHHHHHHCCCH
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHHHHHHHHHHHhH
Confidence 48888884 6777899999999999876432 1449999999999988 89998 77999999999988774
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=5.3e-05 Score=57.24 Aligned_cols=75 Identities=23% Similarity=0.546 Sum_probs=59.6
Q ss_pred CCCCCCCCCcEEE--EEEEcCCCCCCCCCeeEEecc-----cccccccCCCceecccccccCCC-cccHHHHHHHHHHhh
Q 033452 10 GPNDSPYAGGVFV--VTIHFPPDYPFKPPKVAFKTK-----VFHPNINSNGNICLDILKEQWSP-ALTISKVLLSICSLL 81 (119)
Q Consensus 10 gp~~t~y~g~~f~--~~i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~g~ic~~~l~~~W~p-~~~l~~il~~i~~ll 81 (119)
|---.+|.|.+|. +.|-+.+.||..||.+..... -.|-+|+++|.|.+..| .+|.+ +..|..++..+...|
T Consensus 57 GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~f 135 (365)
T KOG2391|consen 57 GTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAAF 135 (365)
T ss_pred CcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHHHh
Confidence 3334578888887 455679999999999976531 13899999999999999 89996 668999999998888
Q ss_pred cCCC
Q 033452 82 TDPN 85 (119)
Q Consensus 82 ~~p~ 85 (119)
.++.
T Consensus 136 ~~~p 139 (365)
T KOG2391|consen 136 SEDP 139 (365)
T ss_pred cCCC
Confidence 8643
No 29
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.02 E-value=0.01 Score=40.93 Aligned_cols=61 Identities=33% Similarity=0.551 Sum_probs=48.4
Q ss_pred EEEEcCCCCCCCCCeeEEecccc---cccccCC-----Cceeccccc-ccCCCcccHHHHHHHHHHhhcC
Q 033452 23 VTIHFPPDYPFKPPKVAFKTKVF---HPNINSN-----GNICLDILK-EQWSPALTISKVLLSICSLLTD 83 (119)
Q Consensus 23 ~~i~fp~~yP~~pP~v~f~t~i~---Hpnv~~~-----g~ic~~~l~-~~W~p~~~l~~il~~i~~ll~~ 83 (119)
+.|.|+.+||..+|.+.+....| +||++.. ..+|+.... ..|.+..++..+|..|...|.+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 56889999999999877765433 5777755 779996543 6799999999999999988875
No 30
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=95.99 E-value=0.015 Score=39.12 Aligned_cols=54 Identities=26% Similarity=0.519 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCCCCCCeeEEeccc-ccccccCCCceeccccc-ccC---CCcccHHHHH
Q 033452 21 FVVTIHFPPDYPFKPPKVAFKTKV-FHPNINSNGNICLDILK-EQW---SPALTISKVL 74 (119)
Q Consensus 21 f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~g~ic~~~l~-~~W---~p~~~l~~il 74 (119)
|.+++.+|..||..+|.|....-- --.-.|..|+||++... .-| .|.++|...|
T Consensus 77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 446667799999999999764210 11233569999998764 345 4667777665
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.92 E-value=0.058 Score=35.51 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=48.7
Q ss_pred CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCce--ecc--------------cccccCCCcc-cHHHH
Q 033452 11 PNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNI--CLD--------------ILKEQWSPAL-TISKV 73 (119)
Q Consensus 11 p~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~i--c~~--------------~l~~~W~p~~-~l~~i 73 (119)
.+.+.|.+..-.+-|.+|..||..+|.+.+..+--... ..|.+ |-+ .....|+|.. +|.+.
T Consensus 34 LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~ 111 (122)
T PF14462_consen 34 LPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTH 111 (122)
T ss_pred CCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHH
Confidence 45667999999999999999999999887764421110 11222 221 1135699987 89999
Q ss_pred HHHHHHhhc
Q 033452 74 LLSICSLLT 82 (119)
Q Consensus 74 l~~i~~ll~ 82 (119)
|..|...|.
T Consensus 112 l~~v~~~L~ 120 (122)
T PF14462_consen 112 LARVEHALA 120 (122)
T ss_pred HHHHHHHHh
Confidence 998888765
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.32 E-value=0.044 Score=34.41 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=22.6
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCCCeeEEecc
Q 033452 13 DSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK 43 (119)
Q Consensus 13 ~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~ 43 (119)
.+.-....+.+.+.||++||..+|.|...+.
T Consensus 43 ~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 43 FESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp CTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred cccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 4445667899999999999999999987654
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.02 E-value=0.091 Score=32.72 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=22.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEecc
Q 033452 17 AGGVFVVTIHFPPDYPFKPPKVAFKTK 43 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~~pP~v~f~t~ 43 (119)
....+.+.+.+|.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999987653
No 34
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=87.64 E-value=2 Score=32.93 Aligned_cols=58 Identities=26% Similarity=0.553 Sum_probs=40.9
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCeeEEe-cccccccccCCCceecccccccCCCcc--cHHHHHHHHH
Q 033452 15 PYAGGVFVVTIHFPPDYPFKPPKVAFK-TKVFHPNINSNGNICLDILKEQWSPAL--TISKVLLSIC 78 (119)
Q Consensus 15 ~y~g~~f~~~i~fp~~yP~~pP~v~f~-t~i~Hpnv~~~g~ic~~~l~~~W~p~~--~l~~il~~i~ 78 (119)
||.|...+-.|.|...+|..||.+.|. ..-|+|... . +..+ .+|++.- .+..++..+.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL~ 121 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISELR 121 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHHH
Confidence 688889999999999999999999996 334777432 1 1222 6788754 4555555444
No 35
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=85.00 E-value=1.7 Score=31.65 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=29.6
Q ss_pred cccccc---cccCCCceecccccccCCCcc-cHHHHHHHHHHhhcCCCCC
Q 033452 42 TKVFHP---NINSNGNICLDILKEQWSPAL-TISKVLLSICSLLTDPNPD 87 (119)
Q Consensus 42 t~i~Hp---nv~~~g~ic~~~l~~~W~p~~-~l~~il~~i~~ll~~p~~~ 87 (119)
|++||. ||+++|+||+.... .|.. ++.+ +....+.|.+-.+.
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FT 176 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFT 176 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCccc
Confidence 456664 99999999997663 5654 6666 87887777764433
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=84.40 E-value=1.8 Score=30.03 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=27.9
Q ss_pred eccccc---ccccCCCceecccccccCCCcccHHHHHHHHHHhhcCCCCCCC
Q 033452 41 KTKVFH---PNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 89 (119)
Q Consensus 41 ~t~i~H---pnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~~ 89 (119)
.|++|| +||+.+|+||+.... .|.......+....+.+.+-...++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 455666 499999999997642 3444445556666655554333333
No 37
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.27 E-value=1.8 Score=28.90 Aligned_cols=66 Identities=24% Similarity=0.501 Sum_probs=40.6
Q ss_pred eCCCCCCCCCcE----------EEEEEEcCCCCCCCCCeeEEeccc-ccccccCCCceecccc-cccCC---CcccHHHH
Q 033452 9 IGPNDSPYAGGV----------FVVTIHFPPDYPFKPPKVAFKTKV-FHPNINSNGNICLDIL-KEQWS---PALTISKV 73 (119)
Q Consensus 9 ~gp~~t~y~g~~----------f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~g~ic~~~l-~~~W~---p~~~l~~i 73 (119)
.-+.||-|-|.+ |.+++.+|-.||..+|.+....-- ----.+..|+||+.-. ..-|. |..++...
T Consensus 58 sn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 58 SNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred cCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 346677776654 456667799999999998653110 0112346899999544 44574 44555544
Q ss_pred H
Q 033452 74 L 74 (119)
Q Consensus 74 l 74 (119)
+
T Consensus 138 ~ 138 (167)
T KOG3357|consen 138 M 138 (167)
T ss_pred H
Confidence 3
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=72.89 E-value=3.6 Score=29.60 Aligned_cols=21 Identities=19% Similarity=0.543 Sum_probs=18.9
Q ss_pred EEEEEEEcCCCCCCCCCeeEE
Q 033452 20 VFVVTIHFPPDYPFKPPKVAF 40 (119)
Q Consensus 20 ~f~~~i~fp~~yP~~pP~v~f 40 (119)
.+.+.+.++.+||..+|.+.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cEEEEEEccCCCCCCCcceec
Confidence 788999999999999999943
No 39
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.61 E-value=8.1 Score=27.38 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=41.9
Q ss_pred EEEEEEcCCCCCCCCCeeEEeccc------ccccccCCCceecccccccCCCcccHHHHHHHHHHhhcC
Q 033452 21 FVVTIHFPPDYPFKPPKVAFKTKV------FHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTD 83 (119)
Q Consensus 21 f~~~i~fp~~yP~~pP~v~f~t~i------~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ll~~ 83 (119)
|++.+.+.--=|.+-|...+..-+ -+.----.+..|++++.+.|+|.+|....+.-++-++.+
T Consensus 98 yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 98 YQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred ceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 556666655556666777776421 111111367899999999999999999888766655543
No 40
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=69.30 E-value=3.9 Score=30.80 Aligned_cols=50 Identities=22% Similarity=0.575 Sum_probs=33.8
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCC-cccHHHHHHHHHHhhc
Q 033452 19 GVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSP-ALTISKVLLSICSLLT 82 (119)
Q Consensus 19 ~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p-~~~l~~il~~i~~ll~ 82 (119)
....++|.++.+||.++|.+....++ .+...|.+ ..++.+++.+.+..+.
T Consensus 137 R~H~l~l~l~~~yp~~~p~~~~~~P~--------------~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 137 RQHYLELKLPSNYPFEPPSCSLDLPI--------------PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp EEEEEEEETTTTTTTSEEEECS-TTS---------------HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCCCceeeCCCCc--------------chhhhhcccccCHHHHHHHHHHHHH
Confidence 55678999999999999976443332 11246888 6688888776666554
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=65.74 E-value=11 Score=25.23 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=22.9
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeeEEec
Q 033452 17 AGGVFVVTIHFPPDYP-FKPPKVAFKT 42 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP-~~pP~v~f~t 42 (119)
+.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4589999999999999 9999998863
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=64.70 E-value=11 Score=26.48 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEec
Q 033452 17 AGGVFVVTIHFPPDYPFKPPKVAFKT 42 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~~pP~v~f~t 42 (119)
+.|.|.|+-.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 56899999999999999999998873
No 43
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=63.94 E-value=27 Score=20.44 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=33.9
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 76 SICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 76 ~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.|+.++..-++...+.++|.....+--+.|...+-+-+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667789999999999999999999888887776
No 44
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=58.42 E-value=18 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=22.7
Q ss_pred CCcEEEEEEEcCCCCC-----CCCCeeEEec
Q 033452 17 AGGVFVVTIHFPPDYP-----FKPPKVAFKT 42 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP-----~~pP~v~f~t 42 (119)
+.|.|.|+-.+|-.|| ..||.|.|.-
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 4588999999999999 8999998863
No 45
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=57.38 E-value=37 Score=19.84 Aligned_cols=42 Identities=14% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 76 SICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 76 ~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.|+.++..-++...+++++..+..+=.+.|...+-..+.+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777888889999999999888999998888877766
No 46
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=56.77 E-value=27 Score=27.39 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=39.1
Q ss_pred cccC-CCceecccc---cccCCCcc--cHHHHHHHHHHhhcCCCCCCCccHH-----HHHHHHhCHHHHHHHHHH
Q 033452 48 NINS-NGNICLDIL---KEQWSPAL--TISKVLLSICSLLTDPNPDDPLVPE-----IAHMCKTDKTKYESSARS 111 (119)
Q Consensus 48 nv~~-~g~ic~~~l---~~~W~p~~--~l~~il~~i~~ll~~p~~~~~~n~~-----aa~~~~~~~~~f~~~~~~ 111 (119)
.|.+ +|+||.++= -+...|.. ||.+++..|.++ .+...+.-...+ +..-|.+..+.|...+-.
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~-nd~~~~~e~~~d~~~~~aL~pyv~~Fe~F~s~l~~ 404 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL-NDEKEYTENRKDLARHGALSPYVEVFEAFVSALIK 404 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc-ccccccccchhhhhhccccchHHHHHHHHHHHHHH
Confidence 3444 999999875 26788865 999999999888 332222222222 334455666666665543
No 47
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=52.16 E-value=37 Score=29.38 Aligned_cols=37 Identities=24% Similarity=0.562 Sum_probs=25.2
Q ss_pred EEEeCCCCCCCCCcEE-EEEEEcCCCCCC-CCCeeEEecc
Q 033452 6 ATIIGPNDSPYAGGVF-VVTIHFPPDYPF-KPPKVAFKTK 43 (119)
Q Consensus 6 ~~i~gp~~t~y~g~~f-~~~i~fp~~yP~-~pP~v~f~t~ 43 (119)
+.+-||-... .|-+| ++.|.||-+||. .+|.++|..+
T Consensus 453 vsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 453 VSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred EEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3445543332 44444 788999999999 7899999743
No 48
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=47.59 E-value=29 Score=25.83 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=26.5
Q ss_pred CCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 88 DPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 88 ~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
...+.+|+..|.++++.|.+.+.+.+++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 447899999999999999999999988764
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=47.43 E-value=26 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.390 Sum_probs=22.0
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEecc
Q 033452 19 GVFVVTIHFPPDYPFKPPKVAFKTK 43 (119)
Q Consensus 19 ~~f~~~i~fp~~yP~~pP~v~f~t~ 43 (119)
-.+.+.+..+..||...|+|....+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4678999999999999999998765
No 50
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=45.67 E-value=55 Score=20.29 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeeEEecc
Q 033452 16 YAGGVFVVTIHFPPDYPFKPPKVAFKTK 43 (119)
Q Consensus 16 y~g~~f~~~i~fp~~yP~~pP~v~f~t~ 43 (119)
-+|..+.|...-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 47888999998999999 599999864
No 51
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=45.40 E-value=30 Score=24.15 Aligned_cols=47 Identities=9% Similarity=0.202 Sum_probs=35.0
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-..+..+...|...|.+-++ +-+..|++|.+.|.++.+...+++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~l~~l~~~~ 157 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDP------SEQEEYKENLRVFLAKLNKLLREW 157 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888887443 345678888888888887665544
No 52
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=44.53 E-value=71 Score=19.37 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=28.6
Q ss_pred eeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc
Q 033452 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK 43 (119)
Q Consensus 2 ~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~ 43 (119)
.+|.+.|.|+.+..-..-+=++...+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 58999999988876667777888889988886 66555555
No 53
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=44.24 E-value=43 Score=24.80 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=36.7
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
|-....+..+...|..-|..- +++-+..|++|.++|.++.++.-.++.
T Consensus 124 Wldp~n~~~~a~~I~~~L~~~------dP~~~~~y~~N~~~~~~~L~~l~~~~~ 171 (286)
T cd01019 124 WLSPENAAEVAQAVAEKLSAL------DPDNAATYAANLEAFNARLAELDATIK 171 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766667788888888888873 344567899999999999887766543
No 54
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=43.78 E-value=38 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.1
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYPF-----KPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~-----~pP~v~f~ 41 (119)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 45889999999999998 88888665
No 55
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=43.76 E-value=24 Score=22.46 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=17.2
Q ss_pred eeeEEEEeCCCCCCCCCcEEEE
Q 033452 2 FHWQATIIGPNDSPYAGGVFVV 23 (119)
Q Consensus 2 ~~w~~~i~gp~~t~y~g~~f~~ 23 (119)
.+|+|.|=| +..|+|-.|.|
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred CceEEEecC--CeeeecceEEE
Confidence 379999997 67999999887
No 56
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=42.23 E-value=43 Score=25.85 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=21.0
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEec
Q 033452 18 GGVFVVTIHFPPDYPFKPPKVAFKT 42 (119)
Q Consensus 18 g~~f~~~i~fp~~yP~~pP~v~f~t 42 (119)
+-.|-+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 4456778889999999999999875
No 57
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=41.68 E-value=43 Score=23.51 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=20.2
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYPF-----KPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~-----~pP~v~f~ 41 (119)
+.|.|.|+-.+|-.||. .||.|.|.
T Consensus 91 ~~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 91 ADGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34889999999999995 77777654
No 58
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=41.60 E-value=32 Score=19.57 Aligned_cols=20 Identities=10% Similarity=0.371 Sum_probs=12.8
Q ss_pred ccCCCcccHHHHHHHHHHhh
Q 033452 62 EQWSPALTISKVLLSICSLL 81 (119)
Q Consensus 62 ~~W~p~~~l~~il~~i~~ll 81 (119)
-+|.|.++|.+++.......
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 37999999999998876643
No 59
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=41.60 E-value=64 Score=19.41 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=26.2
Q ss_pred CCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 87 DDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 87 ~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
..|-+.+|...|++-.++..+..+++.++|+
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3788999999999888888888888888775
No 60
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=40.51 E-value=32 Score=24.83 Aligned_cols=54 Identities=28% Similarity=0.523 Sum_probs=40.8
Q ss_pred CCCCeeEEeccccccccc--CCCceecccccccC--CCcccHHHHHHHHHHhhcCCCC
Q 033452 33 FKPPKVAFKTKVFHPNIN--SNGNICLDILKEQW--SPALTISKVLLSICSLLTDPNP 86 (119)
Q Consensus 33 ~~pP~v~f~t~i~Hpnv~--~~g~ic~~~l~~~W--~p~~~l~~il~~i~~ll~~p~~ 86 (119)
..||.|.|-.++|.-.|+ +.|-|--++....| -|+.++.+-|..|..++-.|+-
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~e 224 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTE 224 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcc
Confidence 479999999999999888 35555445544555 4788899999999888887653
No 61
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=40.45 E-value=31 Score=28.59 Aligned_cols=29 Identities=34% Similarity=0.843 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEEEcCCCCCC---CCCeeEEecc
Q 033452 14 SPYAGGVFVVTIHFPPDYPF---KPPKVAFKTK 43 (119)
Q Consensus 14 t~y~g~~f~~~i~fp~~yP~---~pP~v~f~t~ 43 (119)
+||.=|.|-+ +.+|.+||+ +-|.+.|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5788888887 557999998 8899999986
No 62
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=40.39 E-value=67 Score=19.58 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=18.7
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHH
Q 033452 93 EIAHMCKTDKTKYESSARSWTQK 115 (119)
Q Consensus 93 ~aa~~~~~~~~~f~~~~~~~~~k 115 (119)
+...++++||++|.+..++..++
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHH
Confidence 55678899999999988887664
No 63
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=38.75 E-value=31 Score=26.41 Aligned_cols=26 Identities=19% Similarity=0.509 Sum_probs=20.7
Q ss_pred CCCCCCCCeeEEecccccccccCCCc
Q 033452 29 PDYPFKPPKVAFKTKVFHPNINSNGN 54 (119)
Q Consensus 29 ~~yP~~pP~v~f~t~i~Hpnv~~~g~ 54 (119)
++-+...|+|.|.-.+|||||-+.-+
T Consensus 303 dgs~eds~rvV~~V~lwhpevq~~~r 328 (334)
T KOG3696|consen 303 DGSSEDSPRVVFTVDLWHPEVQPAER 328 (334)
T ss_pred CCCcccCceEEEEEeccCcccccccc
Confidence 44566889999999999999975433
No 64
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=38.42 E-value=55 Score=23.87 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=35.1
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|...|.+-++. -+..|++|.+.|.++.+...+++
T Consensus 98 Wldp~n~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~l~~l~~~~ 144 (264)
T cd01020 98 WYDPETMSKVANALADALVKADPD------NKKYYQANAKKFVASLKPLAAKI 144 (264)
T ss_pred ecCHhHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888889999999874432 34578888888888877765544
No 65
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=37.96 E-value=58 Score=26.74 Aligned_cols=26 Identities=8% Similarity=0.151 Sum_probs=21.7
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 92 PEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 92 ~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.|+.++-.+|++.|.+.|++...++.
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 56666778999999999999988764
No 66
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=37.75 E-value=55 Score=18.56 Aligned_cols=21 Identities=5% Similarity=0.205 Sum_probs=18.5
Q ss_pred ccHHHHHHHHhCHHHHHHHHH
Q 033452 90 LVPEIAHMCKTDKTKYESSAR 110 (119)
Q Consensus 90 ~n~~aa~~~~~~~~~f~~~~~ 110 (119)
.|++.+.+.++|+++|.+...
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHCHHHHHHHHc
Confidence 688999999999999998754
No 67
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.52 E-value=49 Score=24.13 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=34.9
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-..+..+...|...|..-++ +-+..|++|.+.|.++.+....++
T Consensus 115 Wldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~L~~l~~~~ 161 (266)
T cd01018 115 WLSPANAKIMAENIYEALAELDP------QNATYYQANLDALLAELDALDSEI 161 (266)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77667788888999998887443 346678888888888777665544
No 68
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=34.65 E-value=67 Score=26.35 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=22.0
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 92 PEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 92 ~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.|+..+-.+|++.|.+.|++...++.
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 56777778999999999999988764
No 69
>PRK05414 urocanate hydratase; Provisional
Probab=33.87 E-value=70 Score=26.34 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=22.2
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 92 PEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 92 ~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.|+..+-.+|++.|.++|++...++.
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 66777778999999999999988764
No 70
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=33.42 E-value=94 Score=21.21 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=24.0
Q ss_pred eEEEEeCCCCCCCCCcEEEEEEEcCCC
Q 033452 4 WQATIIGPNDSPYAGGVFVVTIHFPPD 30 (119)
Q Consensus 4 w~~~i~gp~~t~y~g~~f~~~i~fp~~ 30 (119)
.|+.+.|++...=+|..+.+++.|-+.
T Consensus 105 yHvMlm~lK~pl~eGd~v~vtL~f~~~ 131 (151)
T COG2847 105 YHVMLMGLKKPLKEGDKVPVTLKFEKA 131 (151)
T ss_pred EEEEEeccCCCccCCCEEEEEEEEecC
Confidence 588999999999999999999999654
No 71
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=32.95 E-value=14 Score=31.69 Aligned_cols=22 Identities=23% Similarity=0.609 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCCCCCeeEEecc
Q 033452 22 VVTIHFPPDYPFKPPKVAFKTK 43 (119)
Q Consensus 22 ~~~i~fp~~yP~~pP~v~f~t~ 43 (119)
.++|.+|.+||..+|.+.+.+.
T Consensus 717 Pl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 717 PLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp ----------------------
T ss_pred CeeEeCCCCCCccCCcCcccHH
Confidence 3677889999999999877544
No 72
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=32.95 E-value=67 Score=24.24 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.3
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-..|..|| ..||.|.|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 4689999999999997 678888776
No 73
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=30.88 E-value=98 Score=23.88 Aligned_cols=40 Identities=30% Similarity=0.562 Sum_probs=28.4
Q ss_pred eeEEEEeCCCCC-CCCCcEEEEEEEc--CCCCCCCCCeeEEec
Q 033452 3 HWQATIIGPNDS-PYAGGVFVVTIHF--PPDYPFKPPKVAFKT 42 (119)
Q Consensus 3 ~w~~~i~gp~~t-~y~g~~f~~~i~f--p~~yP~~pP~v~f~t 42 (119)
+|+..|.|-+++ -|++|.+++.+.- =++-=.+.|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeE
Confidence 588999997777 8889998877652 122234677999953
No 74
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=30.41 E-value=99 Score=23.27 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=35.4
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|..-|..-+ ++-+..|++|-+.|.++.+..-.++
T Consensus 148 Wldp~~~~~~a~~I~~~L~~~d------P~~~~~y~~N~~~~~~~L~~l~~~~ 194 (311)
T PRK09545 148 WLSPEIARATAVAIHDKLVELM------PQSKAKLDANLKDFEAQLAQTDKQI 194 (311)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888988888733 3456788999999988887665544
No 75
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=30.10 E-value=90 Score=23.31 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=26.9
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCC--CeeEEec
Q 033452 13 DSPYAGGVFVVTIHFPPDYPFKP--PKVAFKT 42 (119)
Q Consensus 13 ~t~y~g~~f~~~i~fp~~yP~~p--P~v~f~t 42 (119)
.+.+.|..|++.+..|.+||..- |.|.+..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 57899999999999999999977 9998874
No 76
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=30.02 E-value=80 Score=23.71 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=21.4
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-..|..|| ..||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 4689999999999998 578888776
No 77
>PRK11700 hypothetical protein; Provisional
Probab=30.02 E-value=2e+02 Score=20.35 Aligned_cols=60 Identities=23% Similarity=0.520 Sum_probs=38.0
Q ss_pred CCCCCC-CCcEEEEEEEcCCC--------------CCCCCCeeEEec--------cccccccc-CCCceecccccccCCC
Q 033452 11 PNDSPY-AGGVFVVTIHFPPD--------------YPFKPPKVAFKT--------KVFHPNIN-SNGNICLDILKEQWSP 66 (119)
Q Consensus 11 p~~t~y-~g~~f~~~i~fp~~--------------yP~~pP~v~f~t--------~i~Hpnv~-~~g~ic~~~l~~~W~p 66 (119)
|.+.-| .-|.=|+++.+|.+ .|..++-|++.. ++-+|-|- .+|.+|++..
T Consensus 101 P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~H------ 174 (187)
T PRK11700 101 PGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFH------ 174 (187)
T ss_pred CCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEc------
Confidence 444445 56777888888733 344455555543 35677776 5999999875
Q ss_pred cccHHHHHHH
Q 033452 67 ALTISKVLLS 76 (119)
Q Consensus 67 ~~~l~~il~~ 76 (119)
.++|..|+.+
T Consensus 175 P~slk~IV~S 184 (187)
T PRK11700 175 PHSIKEIVAS 184 (187)
T ss_pred CccHHHHHHh
Confidence 4567666653
No 78
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=29.53 E-value=96 Score=16.45 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=18.2
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 92 PEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 92 ~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.||...+.+=|-...+++|.-+++||
T Consensus 3 ~eA~~~L~~iP~fvR~~~r~~~E~~A 28 (45)
T PF08369_consen 3 DEAEARLDRIPFFVRKKLRDAAEKYA 28 (45)
T ss_dssp HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 35555566667767788888888888
No 79
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.42 E-value=76 Score=23.33 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=33.6
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|...|..-++. -+..|++|.+.|.++.+..-+++
T Consensus 104 Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~L~~l~~~~ 150 (276)
T cd01016 104 WFDVKLWKYAVKAVAEVLSEKLPE------HKDEFQANSEAYVEELDSLDAYA 150 (276)
T ss_pred ccCHHHHHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 766667778888888888874433 35578888888888777665543
No 80
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=29.24 E-value=66 Score=16.95 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.1
Q ss_pred hCHHHHHHHHHHHHHHhcC
Q 033452 100 TDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 100 ~~~~~f~~~~~~~~~k~a~ 118 (119)
.|+-.|.++++..+.+|..
T Consensus 13 ~Dp~~yi~~i~~~~~~yGi 31 (42)
T smart00545 13 KDPLAYISKIRPQAEKYGI 31 (42)
T ss_pred HCHHHHHHHHHHHHhhCCE
Confidence 5889999999998888763
No 81
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=28.67 E-value=88 Score=23.57 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.0
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-..|..|| ..||.|.|.
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 4689999999999996 578888775
No 82
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=28.21 E-value=1.2e+02 Score=17.31 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=24.3
Q ss_pred CccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 89 PLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 89 ~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.++.+++....++-+.+.+.+-+-+.+|+
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999988888888877765
No 83
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.48 E-value=90 Score=23.11 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=34.3
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|---..+..+...|..-|..-++ +-+..|++|.+.|.++.++..+++
T Consensus 120 Wldp~~~~~~a~~Ia~~L~~~dP------~~~~~y~~N~~~~~~~L~~l~~~~ 166 (287)
T cd01137 120 WMSPKNAIIYVKNIAKALSEADP------ANAETYQKNAAAYKAKLKALDEWA 166 (287)
T ss_pred CcCHHHHHHHHHHHHHHHHHHCc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666778888888888887443 335678888888888887766544
No 84
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=26.22 E-value=1.1e+02 Score=17.97 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=24.0
Q ss_pred cccCCCceecccccccCCCcccHHHHHHHHHHhhcC
Q 033452 48 NINSNGNICLDILKEQWSPALTISKVLLSICSLLTD 83 (119)
Q Consensus 48 nv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ll~~ 83 (119)
-|+++|.|.++.+..-=-...|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 467899999998865555677888887777776665
No 85
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.95 E-value=79 Score=19.97 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=20.1
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 91 VPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 91 n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
.++|++.-++.++++++.|-..++|-
T Consensus 75 seeake~irq~rq~~EklAg~lTkki 100 (103)
T COG4847 75 SEEAKESIRQVRQEVEKLAGDLTKKI 100 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888999999988887763
No 86
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=25.56 E-value=1.1e+02 Score=23.07 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=20.6
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-..|..|| ..||.|.|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 4689999999998887 578888775
No 87
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=25.01 E-value=1.2e+02 Score=22.40 Aligned_cols=25 Identities=32% Similarity=0.715 Sum_probs=20.6
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-..|..|| ..||.|.|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 5689999999999996 468888775
No 88
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.99 E-value=1.2e+02 Score=22.03 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=21.1
Q ss_pred CCcEEEEEEEcCCCCCC-------CCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYPF-------KPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~-------~pP~v~f~ 41 (119)
+.|.|.|+-..|--||. .||.|.|.
T Consensus 121 ~~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 121 DDGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 46899999999999964 89998775
No 89
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=24.66 E-value=1.8e+02 Score=20.17 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=33.1
Q ss_pred CCCcc-cHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPAL-TISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~-~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
..|.+ ++.+++.+|..+|...-.+--.-...-..|+.|+.+..+.|+.-.-+|
T Consensus 7 ~~p~~~sl~dLv~~lh~~F~~~~vnveeV~~lM~sYkSnp~EWr~yAkFD~y~Y 60 (196)
T KOG4064|consen 7 LKPRMISLVDLVVQLHEIFQQKLVNVEEVMKLMASYKSNPNEWRRYAKFDMYKY 60 (196)
T ss_pred cCchhhhHHHHHHHHHHHHHhcccCHHHHHHHHHHhhcCHHHHHHHHhhhHHHH
Confidence 34543 889999999998886332211111223357788888888887654444
No 90
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=24.35 E-value=59 Score=24.01 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=24.3
Q ss_pred CCCCccHHHHHHHH-hCHHHHHHHHHHHHHHhcC
Q 033452 86 PDDPLVPEIAHMCK-TDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 86 ~~~~~n~~aa~~~~-~~~~~f~~~~~~~~~k~a~ 118 (119)
+-+.+...--..|. ++++.|++++++.+++.|+
T Consensus 205 p~s~lQ~kyW~~Y~~~E~~lF~~~~~eHA~~lA~ 238 (251)
T PF14798_consen 205 PVSFLQLKYWSIYIEKEQELFDETAKEHARKLAE 238 (251)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556775 5678899999999999885
No 91
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=24.34 E-value=1.2e+02 Score=21.93 Aligned_cols=25 Identities=24% Similarity=0.647 Sum_probs=21.3
Q ss_pred CCcEEEEEEEcCCCCCC-------CCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYPF-------KPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~-------~pP~v~f~ 41 (119)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 116 ~~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 116 SDGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 46899999999999975 89988775
No 92
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=24.14 E-value=29 Score=17.27 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=9.1
Q ss_pred cccccccCCCc-eecc
Q 033452 44 VFHPNINSNGN-ICLD 58 (119)
Q Consensus 44 i~Hpnv~~~g~-ic~~ 58 (119)
-|||.++.+|+ .|..
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999998777 4554
No 93
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=23.95 E-value=32 Score=22.12 Aligned_cols=20 Identities=35% Similarity=0.762 Sum_probs=15.6
Q ss_pred CCceecccccccCCCcccHH
Q 033452 52 NGNICLDILKEQWSPALTIS 71 (119)
Q Consensus 52 ~g~ic~~~l~~~W~p~~~l~ 71 (119)
.|..|.=.+.+.|+|.+++.
T Consensus 50 Gg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CceEEEEEcCCCCCCCCEEE
Confidence 55668888889999998653
No 94
>PF15572 Imm26: Immunity protein 26
Probab=23.52 E-value=1.1e+02 Score=19.31 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=35.9
Q ss_pred CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc-c-----cccccc----CCCceeccccc---ccCCCcccHHHHHHHH
Q 033452 11 PNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK-V-----FHPNIN----SNGNICLDILK---EQWSPALTISKVLLSI 77 (119)
Q Consensus 11 p~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~-i-----~Hpnv~----~~g~ic~~~l~---~~W~p~~~l~~il~~i 77 (119)
+.+..+.|.+|++ |..||.+ +.|-|+-- . -+..+. ..|.+....-. .++..+++-.-++...
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFmV~e~~~~~~~~~L~v~sG~kAG~i~~~fP~Ea~~~~~~aiSt~Wli~NW 81 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFMVFEDPDFGRGFGLVVISGYKAGLILVKFPKEAESKEGRAISTEWLIENW 81 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEEEEeccCCCCceeEEEEeeEecceEEEeCCHHHhhcccccccHHHHHHHH
Confidence 3456777877766 6669998 77777521 1 111111 24555443322 2344466666666666
Q ss_pred HHhhc
Q 033452 78 CSLLT 82 (119)
Q Consensus 78 ~~ll~ 82 (119)
+.-+.
T Consensus 82 ~kwiY 86 (96)
T PF15572_consen 82 EKWIY 86 (96)
T ss_pred HHhhc
Confidence 65544
No 95
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=23.21 E-value=1.2e+02 Score=22.26 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=33.3
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-....+..+...|...|..-++ +-+..|++|.+.|.++.+....++
T Consensus 116 Wldp~~~~~~a~~Ia~~L~~~dP------~~~~~y~~N~~~~~~~L~~l~~~~ 162 (282)
T cd01017 116 WLSPVLAIQQVENIKDALIKLDP------DNKEYYEKNAAAYAKKLEALDQEY 162 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666777888888888886443 335578888888888776655443
No 96
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=22.84 E-value=87 Score=22.46 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|--...+..+...|..-|.. ++++.+..|++|.+.|.++.+....++
T Consensus 95 Wldp~~~~~~~~~Ia~~L~~------~~P~~~~~y~~N~~~~~~~L~~l~~~~ 141 (256)
T PF01297_consen 95 WLDPENAKKMAEAIADALSE------LDPANKDYYEKNAEKYLKELDELDAEI 141 (256)
T ss_dssp GGSHHHHHHHHHHHHHHHHH------HTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------hCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778888887776 234456688888888888887776654
No 97
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=21.25 E-value=1.1e+02 Score=21.64 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=16.1
Q ss_pred EEEEeCCCCCCCCCcEEEEEEEcCCC
Q 033452 5 QATIIGPNDSPYAGGVFVVTIHFPPD 30 (119)
Q Consensus 5 ~~~i~gp~~t~y~g~~f~~~i~fp~~ 30 (119)
|+.+..+.+++..|..++++|.+.++
T Consensus 1 h~yl~~~~gGl~~GD~l~~~i~v~~g 26 (209)
T PF01774_consen 1 HVYLMNPSGGLLGGDRLRIDITVGPG 26 (209)
T ss_dssp -EEEEE--S-B-TT-EEEEEEEE-TT
T ss_pred CEEEEeCCCcCcCCCEEEEEEEECCC
Confidence 45677799999999999999998765
No 98
>PRK14052 effector protein; Provisional
Probab=20.77 E-value=26 Score=27.11 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=18.1
Q ss_pred ccccccCCCceec------ccccccCCC-cccHHHHH
Q 033452 45 FHPNINSNGNICL------DILKEQWSP-ALTISKVL 74 (119)
Q Consensus 45 ~Hpnv~~~g~ic~------~~l~~~W~p-~~~l~~il 74 (119)
.||.+|.||++-- ++..+.|+| +.+-+..|
T Consensus 347 IHPFlDGNGRtGRLLInLi~lrn~~~~pl~~~~e~~l 383 (387)
T PRK14052 347 YHGFTDGNGRMGRMLYAIAELRNDSFNPLAMNAENSL 383 (387)
T ss_pred ecCCCCCCcHHHHHHHHHHHHhcCCcCccccchhhhh
Confidence 6999999998632 122356776 33444444
No 99
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=20.25 E-value=48 Score=16.66 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=13.8
Q ss_pred hCHHHHHHHHHHHHHHhc
Q 033452 100 TDKTKYESSARSWTQKYA 117 (119)
Q Consensus 100 ~~~~~f~~~~~~~~~k~a 117 (119)
+|+-.|.++++.+..+|.
T Consensus 11 ~dp~~yi~~i~~~g~~~G 28 (34)
T PF02375_consen 11 KDPIKYISSIEPEGEKYG 28 (34)
T ss_dssp S-HHHHHHHHHHTTGGGS
T ss_pred hCHHHHHHHHHHHHHHCC
Confidence 488889999888887765
Done!