Query 033452
Match_columns 119
No_of_seqs 126 out of 1074
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 23:37:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 1.3E-47 4.6E-52 259.9 15.8 119 1-119 33-151 (151)
2 2r0j_A Ubiquitin carrier prote 100.0 1.2E-47 4E-52 259.7 15.2 119 1-119 30-148 (149)
3 2c2v_B Ubiquitin-conjugating e 100.0 8.3E-48 2.8E-52 261.7 13.5 119 1-119 34-152 (154)
4 2bep_A Ubiquitin-conjugating e 100.0 4.8E-47 1.7E-51 259.1 15.9 119 1-119 40-159 (159)
5 1z2u_A Ubiquitin-conjugating e 100.0 4.7E-47 1.6E-51 257.0 15.5 118 1-118 33-150 (150)
6 1fxt_A Ubiquitin-conjugating e 100.0 1.7E-47 5.8E-52 258.9 13.0 118 1-118 31-149 (149)
7 2ayv_A Ubiquitin-conjugating e 100.0 6.4E-47 2.2E-51 260.0 15.6 117 1-117 50-166 (166)
8 2c4o_A Ubiquitin-conjugating e 100.0 7.9E-47 2.7E-51 259.4 15.5 118 1-118 48-165 (165)
9 1ayz_A UBC2, ubiquitin-conjuga 100.0 5.4E-47 1.9E-51 261.0 14.5 118 1-118 33-150 (169)
10 2aak_A UBC1, ubiquitin conjuga 100.0 1.1E-46 3.8E-51 255.6 15.5 119 1-119 33-151 (152)
11 1jat_A Ubiquitin-conjugating e 100.0 4.8E-47 1.6E-51 258.2 13.1 119 1-119 34-152 (155)
12 1yh2_A HSPC150 protein similar 100.0 2E-46 6.8E-51 258.3 15.8 119 1-119 33-155 (169)
13 1zdn_A Ubiquitin-conjugating e 100.0 7E-47 2.4E-51 258.1 13.4 117 1-117 42-158 (158)
14 3h8k_A Ubiquitin-conjugating e 100.0 2.7E-46 9.2E-51 256.5 15.7 119 1-119 33-164 (164)
15 2gjd_A Ubiquitin-conjugating e 100.0 3.7E-46 1.3E-50 254.3 15.1 118 1-118 38-157 (157)
16 2f4z_A Tgtwinscan_2721 - E2 do 100.0 4.2E-46 1.4E-50 261.1 15.5 119 1-119 74-193 (193)
17 3k9o_A Ubiquitin-conjugating e 100.0 6.1E-46 2.1E-50 262.0 15.8 119 1-119 37-156 (201)
18 2e2c_A Ubiquitin conjugating e 100.0 4.9E-46 1.7E-50 253.4 14.7 117 1-118 38-154 (156)
19 2ucz_A UBC7, ubiquitin conjuga 100.0 5.2E-46 1.8E-50 255.3 14.7 118 1-118 34-164 (165)
20 2grr_A Ubiquitin-conjugating e 100.0 7.3E-46 2.5E-50 253.7 15.3 119 1-119 41-161 (161)
21 3rcz_B SUMO-conjugating enzyme 100.0 7.6E-46 2.6E-50 254.0 15.3 117 1-117 44-162 (163)
22 3bzh_A Ubiquitin-conjugating e 100.0 8.7E-46 3E-50 259.8 15.6 118 1-118 77-194 (194)
23 2pwq_A Ubiquitin conjugating e 100.0 5.4E-46 1.9E-50 264.4 14.0 119 1-119 52-171 (216)
24 2onu_A Ubiquitin-conjugating e 100.0 6.5E-46 2.2E-50 251.9 12.8 119 1-119 28-148 (152)
25 1i7k_A Ubiquitin-conjugating e 100.0 1.7E-45 5.8E-50 255.5 13.8 118 1-119 59-176 (179)
26 1wzv_A Ubiquitin-conjugating e 100.0 2.5E-45 8.4E-50 249.7 13.3 117 1-118 34-151 (155)
27 2z5d_A Ubiquitin-conjugating e 100.0 1.4E-45 4.7E-50 255.8 12.1 118 1-118 50-169 (179)
28 1tte_A Ubiquitin-conjugating e 100.0 7.1E-46 2.4E-50 263.6 10.2 119 1-119 32-151 (215)
29 3e46_A Ubiquitin-conjugating e 100.0 9E-45 3.1E-49 263.2 15.8 119 1-119 89-208 (253)
30 3fn1_B NEDD8-conjugating enzym 100.0 1.1E-44 3.6E-49 249.2 14.5 117 1-118 44-167 (167)
31 1yf9_A Ubiquitin carrier prote 100.0 7.2E-45 2.5E-49 250.8 12.6 118 1-118 37-156 (171)
32 1c4z_D UBCH7, ubiquitin conjug 100.0 6.4E-45 2.2E-49 247.4 11.1 118 1-119 32-150 (154)
33 2y9m_A Ubiquitin-conjugating e 100.0 4E-44 1.4E-48 247.4 15.1 118 1-118 47-168 (172)
34 1y8x_A Ubiquitin-conjugating e 100.0 1.6E-43 5.5E-48 241.9 14.3 114 1-115 34-147 (160)
35 3rz3_A Ubiquitin-conjugating e 100.0 1.5E-43 5E-48 246.7 13.9 118 1-118 37-173 (183)
36 1yrv_A Ubiquitin-conjugating l 100.0 1.5E-43 5.3E-48 243.8 12.5 114 1-115 52-168 (169)
37 2nvu_C NEDD8-conjugating enzym 100.0 4.4E-43 1.5E-47 243.6 13.7 114 1-115 54-167 (180)
38 2awf_A Ubiquitin-conjugating e 100.0 1.4E-43 4.6E-48 244.7 10.8 112 1-112 47-172 (172)
39 4ddg_A Ubiquitin-conjugating e 100.0 1.9E-42 6.6E-47 265.0 15.6 119 1-119 32-150 (399)
40 3o2u_A NEDD8-conjugating enzym 100.0 3.8E-42 1.3E-46 240.7 12.9 113 3-116 65-177 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.2E-39 4.2E-44 224.0 11.8 110 1-110 49-163 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 5.4E-39 1.9E-43 239.0 11.6 118 1-118 109-243 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 6.5E-39 2.2E-43 218.2 7.0 100 1-101 54-156 (156)
44 2a4d_A Ubiquitin-conjugating e 100.0 7.6E-37 2.6E-41 208.6 9.6 95 1-95 58-156 (160)
45 1jat_B Ubiquitin-conjugating e 100.0 7.2E-38 2.5E-42 209.3 4.0 97 1-98 39-138 (138)
46 2hlw_A Ubiquitin-conjugating e 100.0 1.7E-36 5.9E-41 208.7 7.0 95 1-95 68-166 (170)
47 2fo3_A Ubiquitin-conjugating e 100.0 1.1E-35 3.8E-40 195.7 10.5 87 1-87 35-122 (125)
48 2h2y_A Ubiquitin-conjugating e 100.0 4.9E-35 1.7E-39 195.1 10.8 86 1-86 49-135 (136)
49 2a7l_A Hypothetical ubiquitin- 100.0 4.1E-34 1.4E-38 190.6 11.0 82 1-82 53-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 2.2E-32 7.6E-37 190.8 12.5 87 1-89 43-132 (187)
51 1zuo_A Hypothetical protein LO 100.0 4.7E-34 1.6E-38 199.1 0.8 109 1-117 59-181 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.7E-24 5.7E-29 146.8 4.0 75 1-75 55-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 1.1E-20 3.7E-25 128.6 8.2 85 3-88 62-161 (162)
54 3kpa_A Probable ubiquitin fold 99.7 1.3E-17 4.5E-22 111.0 2.1 69 3-74 59-145 (168)
55 3obq_A Tumor susceptibility ge 99.6 5E-16 1.7E-20 104.0 7.1 77 1-83 53-138 (146)
56 2ebm_A RWD domain-containing p 96.5 0.016 5.4E-07 36.9 7.4 25 18-42 54-78 (128)
57 2daw_A RWD domain containing p 95.9 0.081 2.8E-06 34.9 8.9 23 20-42 76-98 (154)
58 2ebk_A RWD domain-containing p 94.7 0.24 8.2E-06 31.3 7.9 23 19-41 56-78 (128)
59 2yz0_A Serine/threonine-protei 94.5 0.13 4.4E-06 33.0 6.3 25 18-42 61-85 (138)
60 2day_A Ring finger protein 25; 94.2 0.18 6.1E-06 31.9 6.4 25 19-43 59-83 (128)
61 2dax_A Protein C21ORF6; RWD do 93.8 0.23 8E-06 32.4 6.6 25 19-43 73-97 (152)
62 3zqs_A E3 ubiquitin-protein li 93.8 0.24 8.3E-06 33.9 6.8 53 17-83 36-88 (186)
63 1ukx_A GCN2, GCN2 EIF2alpha ki 92.6 0.082 2.8E-06 33.8 2.8 23 19-41 63-85 (137)
64 2cwb_A Chimera of immunoglobul 91.4 0.036 1.2E-06 34.8 0.0 34 84-117 21-54 (108)
65 1h3o_B Transcription initiatio 50.2 25 0.00087 20.2 3.8 41 77-117 11-51 (76)
66 2bum_A Protocatechuate 3,4-dio 43.5 24 0.00082 24.3 3.5 25 17-41 109-138 (209)
67 1zoq_C CREB-binding protein, i 41.2 18 0.00061 18.8 1.9 43 74-118 3-46 (47)
68 2f4m_B UV excision repair prot 39.1 32 0.0011 18.9 2.9 20 90-109 37-56 (61)
69 1pve_A HHR23B, UV excision rep 37.4 31 0.0011 19.7 2.8 21 90-110 39-59 (72)
70 2fkn_A Urocanate hydratase; ro 33.6 49 0.0017 26.1 4.1 26 92-117 278-303 (552)
71 1x87_A Urocanase protein; stru 33.4 50 0.0017 26.0 4.1 26 92-117 277-302 (551)
72 1uwk_A Urocanate hydratase; hy 33.0 51 0.0017 26.0 4.1 26 92-117 282-307 (557)
73 2k6w_A Putative uncharacterize 32.2 51 0.0017 20.5 3.4 27 4-30 82-108 (120)
74 3mfq_A TROA, high-affinity zin 30.3 53 0.0018 23.2 3.7 47 64-116 106-152 (282)
75 2kru_A Light-independent proto 28.7 57 0.002 18.1 2.9 28 91-118 7-34 (63)
76 1pq4_A Periplasmic binding pro 27.7 38 0.0013 24.0 2.5 47 64-116 135-181 (291)
77 2jrw_A Cyclic extended PEP.1; 27.2 17 0.00057 16.1 0.4 14 34-47 6-19 (26)
78 2bum_B Protocatechuate 3,4-dio 27.0 36 0.0012 23.9 2.3 25 17-41 134-165 (241)
79 1x9l_A CUI-DR1885; copper bind 26.0 54 0.0018 21.2 2.8 27 4-30 107-133 (149)
80 2xsu_A Catechol 1,2 dioxygenas 25.6 40 0.0014 24.7 2.3 25 17-41 187-229 (312)
81 3zqs_A E3 ubiquitin-protein li 25.5 33 0.0011 23.2 1.7 56 18-78 123-180 (186)
82 3gi1_A LBP, laminin-binding pr 25.5 45 0.0015 23.6 2.6 47 64-116 124-170 (286)
83 3rls_A YAF9, protein AF-9 homo 25.4 1.5E+02 0.0053 19.7 5.7 40 2-43 33-72 (175)
84 2azq_A Catechol 1,2-dioxygenas 25.2 41 0.0014 24.6 2.3 25 17-41 183-225 (311)
85 1tmx_A Hydroxyquinol 1,2-dioxy 25.0 42 0.0014 24.4 2.3 25 17-41 183-225 (293)
86 3n9t_A PNPC; phospholipid bind 24.3 44 0.0015 24.2 2.3 25 17-41 180-222 (290)
87 3t63_M 3,4-PCD, protocatechuat 24.2 44 0.0015 23.5 2.3 25 17-41 133-164 (238)
88 2yzh_A Probable thiol peroxida 24.1 46 0.0016 20.9 2.3 34 48-81 138-171 (171)
89 2prs_A High-affinity zinc upta 24.0 49 0.0017 23.3 2.5 47 64-116 119-165 (284)
90 2o1e_A YCDH; alpha-beta protei 23.9 49 0.0017 23.8 2.6 47 64-116 135-181 (312)
91 4g2e_A Peroxiredoxin; redox pr 23.6 68 0.0023 19.9 3.0 33 48-80 124-156 (157)
92 3t63_A 3,4-PCD, protocatechuat 23.6 51 0.0018 22.4 2.5 23 19-41 102-129 (200)
93 2boy_A 3-chlorocatechol 1,2-di 23.5 47 0.0016 23.5 2.3 25 17-41 153-195 (254)
94 3ujp_A Mn transporter subunit; 23.2 61 0.0021 23.3 3.0 47 64-116 133-179 (307)
95 3qrl_A Transcription initiatio 23.0 1.6E+02 0.0054 18.9 5.8 43 1-45 32-77 (140)
96 3cx3_A Lipoprotein; zinc-bindi 22.6 55 0.0019 23.1 2.6 47 64-116 122-168 (284)
97 1kbh_B CREB-binding protein, n 22.5 1E+02 0.0035 16.7 5.6 45 73-118 9-53 (59)
98 3th1_A Chlorocatechol 1,2-diox 22.3 78 0.0027 22.5 3.3 25 17-41 150-192 (260)
99 1dmh_A 1,2-CTD, catechol 1,2-d 22.1 50 0.0017 24.2 2.3 25 17-41 186-228 (311)
100 1toa_A Tromp-1, protein (perip 22.1 56 0.0019 23.5 2.6 47 64-116 140-186 (313)
101 4gqc_A Thiol peroxidase, perox 21.5 89 0.0031 19.7 3.3 35 48-82 126-160 (164)
102 3hh8_A Metal ABC transporter s 21.4 61 0.0021 23.0 2.6 47 64-116 126-172 (294)
103 3hhy_A 1,2-CTD, catechol 1,2-d 21.4 49 0.0017 23.8 2.1 25 17-41 182-224 (280)
104 2l09_A ASR4154 protein; proto- 21.1 55 0.0019 18.1 1.8 27 92-118 7-33 (62)
105 2jsy_A Probable thiol peroxida 21.0 67 0.0023 19.8 2.6 34 48-81 133-166 (167)
106 1oqy_A HHR23A, UV excision rep 20.4 1.1E+02 0.0038 22.8 3.9 38 74-111 246-291 (368)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.3e-47 Score=259.91 Aligned_cols=119 Identities=66% Similarity=1.230 Sum_probs=117.0
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 33 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 112 (151)
T 4gpr_A 33 IFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSL 112 (151)
T ss_dssp TTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCCEEEcccccCCCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|.+||+++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 113 l~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 113 LTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp HHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred hcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999974
No 2
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.2e-47 Score=259.70 Aligned_cols=119 Identities=50% Similarity=0.946 Sum_probs=116.9
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 30 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 109 (149)
T 2r0j_A 30 YRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQAL 109 (149)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCEEechhcCCCCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 110 l~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 110 LSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp HHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999975
No 3
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.3e-48 Score=261.70 Aligned_cols=119 Identities=50% Similarity=0.952 Sum_probs=114.8
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 34 l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 113 (154)
T 2c2v_B 34 ARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQAL 113 (154)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHH
T ss_pred hheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCCeEEchhccCCCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 114 l~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 114 LSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp TTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999974
No 4
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=4.8e-47 Score=259.10 Aligned_cols=119 Identities=45% Similarity=0.880 Sum_probs=116.7
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccccccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~~l~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|+||+++|.++|+|++++.+||.+|++
T Consensus 40 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ 119 (159)
T 2bep_A 40 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 119 (159)
T ss_dssp SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHH
T ss_pred hheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
+|.+|++++|+|.+||++|++|+++|.++||+|++|||+|
T Consensus 120 ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 120 LLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp HHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999986
No 5
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=4.7e-47 Score=256.98 Aligned_cols=118 Identities=78% Similarity=1.404 Sum_probs=116.1
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 33 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 112 (150)
T 1z2u_A 33 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSL 112 (150)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCCeEeeccccCCCCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 113 l~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 113 LCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp HHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred hhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999996
No 6
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.7e-47 Score=258.90 Aligned_cols=118 Identities=48% Similarity=0.966 Sum_probs=116.1
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccccccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~~l~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|++++.+||.+|++
T Consensus 31 l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ 110 (149)
T 1fxt_A 31 IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQA 110 (149)
T ss_dssp SSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
+|.+|++++|+|.+||++|++|+++|.++||+|++|||+
T Consensus 111 ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 111 LLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp HHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred HHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999996
No 7
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=6.4e-47 Score=260.03 Aligned_cols=117 Identities=78% Similarity=1.409 Sum_probs=115.4
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 50 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sl 129 (166)
T 2ayv_A 50 MFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSL 129 (166)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred cceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
|.+|++++|+|.+||++|++|+++|.++||+|++|||
T Consensus 130 l~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 130 LTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp HHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998
No 8
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=7.9e-47 Score=259.38 Aligned_cols=118 Identities=81% Similarity=1.429 Sum_probs=116.2
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 48 l~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~l 127 (165)
T 2c4o_A 48 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSL 127 (165)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
|.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 128 l~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 128 LCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp HHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred HhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999996
No 9
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=5.4e-47 Score=261.05 Aligned_cols=118 Identities=42% Similarity=0.835 Sum_probs=116.1
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 33 l~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~l 112 (169)
T 1ayz_A 33 VMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSL 112 (169)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCCeEeehhhccCCCCcCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 113 l~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 113 FNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp HTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999995
No 10
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.1e-46 Score=255.60 Aligned_cols=119 Identities=44% Similarity=0.884 Sum_probs=116.2
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 33 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 112 (152)
T 2aak_A 33 IMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSL 112 (152)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHH
T ss_pred ccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 113 l~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 113 LCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp HTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred HhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999963
No 11
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=4.8e-47 Score=258.19 Aligned_cols=119 Identities=48% Similarity=0.890 Sum_probs=116.6
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 34 l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 113 (155)
T 1jat_A 34 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQAL 113 (155)
T ss_dssp EEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred hhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCEEEchhhccCCCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 114 l~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 114 LASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp HHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred HhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999963
No 12
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2e-46 Score=258.30 Aligned_cols=119 Identities=45% Similarity=0.885 Sum_probs=116.5
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccc----ccCCCcccHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILK----EQWSPALTISKVLLS 76 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~----~~W~p~~~l~~il~~ 76 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|. ++|+|+++|.+||.+
T Consensus 33 l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~s 112 (169)
T 1yh2_A 33 MDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTS 112 (169)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHH
T ss_pred hheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcCCeEecccccCCcccCCCCCCcHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999997 899999999999999
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 77 ICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 77 i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 113 i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 155 (169)
T 1yh2_A 113 IQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 155 (169)
T ss_dssp HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999974
No 13
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7e-47 Score=258.07 Aligned_cols=117 Identities=40% Similarity=0.751 Sum_probs=115.4
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 42 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~l 121 (158)
T 1zdn_A 42 LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCL 121 (158)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHH
T ss_pred hhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
|.+||+++|+|.+||++|++|+++|.++||+|+++||
T Consensus 122 l~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 122 LIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp HHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998
No 14
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=2.7e-46 Score=256.49 Aligned_cols=119 Identities=38% Similarity=0.793 Sum_probs=116.1
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccc-------------ccCCCc
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILK-------------EQWSPA 67 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~-------------~~W~p~ 67 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|. ++|+|+
T Consensus 33 l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~ 112 (164)
T 3h8k_A 33 FFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPV 112 (164)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTT
T ss_pred ccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCCCcEeeecccCcccccccccccccCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999996 789999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 68 ~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
+||.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|++|++++
T Consensus 113 ~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~~~ 164 (164)
T 3h8k_A 113 QSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 164 (164)
T ss_dssp CCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999874
No 15
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3.7e-46 Score=254.27 Aligned_cols=118 Identities=36% Similarity=0.792 Sum_probs=115.5
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccc--cCCCcccHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSIC 78 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~--~W~p~~~l~~il~~i~ 78 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.. +|+|+++|.+||.+|+
T Consensus 38 l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~ 117 (157)
T 2gjd_A 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQ 117 (157)
T ss_dssp EEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999976 7999999999999999
Q ss_pred HhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 79 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
++|.+|++++|+|.+||++|++|+++|.++||+|++|||+
T Consensus 118 ~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 118 DLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp HHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred HHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999996
No 16
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-46 Score=261.15 Aligned_cols=119 Identities=48% Similarity=0.960 Sum_probs=115.8
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccccccc-CCCceecccccccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~-~~g~ic~~~l~~~W~p~~~l~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+ .+|+||+++|.++|+|+++|.+||.+|++
T Consensus 74 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~s 153 (193)
T 2f4z_A 74 IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQA 153 (193)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
+|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 154 ll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya~~ 193 (193)
T 2f4z_A 154 MLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKE 193 (193)
T ss_dssp HHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred HHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999974
No 17
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=6.1e-46 Score=261.99 Aligned_cols=119 Identities=45% Similarity=0.880 Sum_probs=116.5
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccccccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~~l~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|+||+++|.++|+|+++|.+||.+|++
T Consensus 37 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ 116 (201)
T 3k9o_A 37 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 116 (201)
T ss_dssp SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
+|.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 117 ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 117 LLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp HHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred HhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999974
No 18
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=4.9e-46 Score=253.40 Aligned_cols=117 Identities=41% Similarity=0.820 Sum_probs=114.8
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 38 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~l 117 (156)
T 2e2c_A 38 LFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSL 117 (156)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccCceEECccccccCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
|.+|++++|+|.+||++| +|+++|.++||+|+++||.
T Consensus 118 l~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 118 LGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp TTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999 8999999999999999985
No 19
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=5.2e-46 Score=255.29 Aligned_cols=118 Identities=37% Similarity=0.812 Sum_probs=115.2
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccc-------------cccCCCc
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL-------------KEQWSPA 67 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l-------------~~~W~p~ 67 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++| .++|+|+
T Consensus 34 l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~ 113 (165)
T 2ucz_A 34 IFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPV 113 (165)
T ss_dssp CSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTT
T ss_pred ccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCCCcEeehhhCCccccccccCCCCCCCCCc
Confidence 579999999999999999999999999999999999999999999999999999999999 6789999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 68 ~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++.
T Consensus 114 ~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 114 QSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLG 164 (165)
T ss_dssp CCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999975
No 20
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=7.3e-46 Score=253.71 Aligned_cols=119 Identities=37% Similarity=0.813 Sum_probs=115.5
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccc--cCCCcccHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSIC 78 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~--~W~p~~~l~~il~~i~ 78 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.. +|+|+++|.+||.+|+
T Consensus 41 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~ 120 (161)
T 2grr_A 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 120 (161)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999975 7999999999999999
Q ss_pred HhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 79 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 121 ~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 121 ELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp HHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred HHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999975
No 21
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=7.6e-46 Score=254.04 Aligned_cols=117 Identities=40% Similarity=0.840 Sum_probs=114.4
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccccc--CCCcccHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQ--WSPALTISKVLLSIC 78 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~--W~p~~~l~~il~~i~ 78 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|... |+|+++|.+||.+|+
T Consensus 44 l~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~ 123 (163)
T 3rcz_B 44 LMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQ 123 (163)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999754 999999999999999
Q ss_pred HhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 79 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
++|.+|++++|+|.+||++|++|+++|.++||+|++|||
T Consensus 124 ~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 124 DLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162 (163)
T ss_dssp HHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998
No 22
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=8.7e-46 Score=259.77 Aligned_cols=118 Identities=61% Similarity=1.123 Sum_probs=116.3
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|++|
T Consensus 77 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~l 156 (194)
T 3bzh_A 77 IYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSL 156 (194)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred cccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCCCceechhhhccCCCcCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
|.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 157 l~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 157 LTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp HHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999996
No 23
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=5.4e-46 Score=264.40 Aligned_cols=119 Identities=50% Similarity=1.023 Sum_probs=116.2
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccccccc-CCCceecccccccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~-~~g~ic~~~l~~~W~p~~~l~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+ .+|.||+++|.++|+|+++|.+||.+|++
T Consensus 52 l~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~s 131 (216)
T 2pwq_A 52 FFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQA 131 (216)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHH
T ss_pred cceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999 49999999999999999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 132 LL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 132 LLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp HHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999974
No 24
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=6.5e-46 Score=251.86 Aligned_cols=119 Identities=34% Similarity=0.787 Sum_probs=115.4
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccccccCCCcccHHHHHHH-HH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLS-IC 78 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~~l~~il~~-i~ 78 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|++++.+||.+ |+
T Consensus 28 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~ 107 (152)
T 2onu_A 28 TQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLP 107 (152)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHH
T ss_pred cceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEecccccccCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999995 9999999999999999999999999 68
Q ss_pred HhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 79 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
+||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 108 ~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 108 QLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp HHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred HHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999973
No 25
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-45 Score=255.48 Aligned_cols=118 Identities=36% Similarity=0.699 Sum_probs=115.1
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 59 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sl 138 (179)
T 1i7k_A 59 LFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSL 138 (179)
T ss_dssp EEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccCCeEEcccCcCcCCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|.+|++++|+|.+||++| +|+++|.++|+++++++++|
T Consensus 139 l~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 139 LGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp HHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred HhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999 99999999999999999875
No 26
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=2.5e-45 Score=249.71 Aligned_cols=117 Identities=35% Similarity=0.830 Sum_probs=115.1
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccc-cccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL-KEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l-~~~W~p~~~l~~il~~i~~ 79 (119)
|++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++| .++|+|+++|.+||.+|++
T Consensus 34 l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ 112 (155)
T 1wzv_A 34 VLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNV 112 (155)
T ss_dssp TTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHH
T ss_pred hheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCCCeEeecCCCccCCCCCCcHHHHHHHHHH
Confidence 579999999 99999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
+|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 113 ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 113 LVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp HHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999996
No 27
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-45 Score=255.79 Aligned_cols=118 Identities=36% Similarity=0.798 Sum_probs=115.9
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccccccCCCcccHHHHHHH-HH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLS-IC 78 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~~l~~il~~-i~ 78 (119)
+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+ |+
T Consensus 50 l~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~ 129 (179)
T 2z5d_A 50 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLP 129 (179)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHH
T ss_pred CceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEeccccccCCCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999998 9999999999999999999999999 99
Q ss_pred HhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 79 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
++|.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 130 ~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 130 QLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp HHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred HHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999996
No 28
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=7.1e-46 Score=263.63 Aligned_cols=119 Identities=47% Similarity=0.954 Sum_probs=116.3
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccccccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~~l~~il~~i~~ 79 (119)
+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|++||.+||.+|++
T Consensus 32 l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~s 111 (215)
T 1tte_A 32 IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQA 111 (215)
T ss_dssp CCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHH
T ss_pred ccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCEEECccCCCCCCCcCcHHHHHHHHHH
Confidence 359999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 112 LL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 112 LLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp HHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred HHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999974
No 29
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=9e-45 Score=263.16 Aligned_cols=119 Identities=45% Similarity=0.880 Sum_probs=116.6
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccccccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~~l~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|++
T Consensus 89 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ 168 (253)
T 3e46_A 89 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 168 (253)
T ss_dssp SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
+|.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 169 ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 169 LLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp HHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred HhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999975
No 30
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.1e-44 Score=249.22 Aligned_cols=117 Identities=38% Similarity=0.702 Sum_probs=113.3
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccc------cCCCcccHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE------QWSPALTISKVL 74 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~------~W~p~~~l~~il 74 (119)
|++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.. +|+|+++|.+||
T Consensus 44 l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl 122 (167)
T 3fn1_B 44 LHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVV 122 (167)
T ss_dssp TTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHH
T ss_pred ceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHH
Confidence 56899998 89999999999999999999999999999999999999999999999999965 799999999999
Q ss_pred HHHHHhhcC-CCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 75 LSICSLLTD-PNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 75 ~~i~~ll~~-p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
.+|+++|.+ ||+++|+|.+||++|++|+++|.++||+|++|||+
T Consensus 123 ~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 123 WGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp HHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999 69999999999999999999999999999999996
No 31
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=7.2e-45 Score=250.82 Aligned_cols=118 Identities=30% Similarity=0.751 Sum_probs=115.1
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceecccccccCCCcccHHHHHHHH-H
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSI-C 78 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~g~ic~~~l~~~W~p~~~l~~il~~i-~ 78 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+| +
T Consensus 37 l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~ 116 (171)
T 1yf9_A 37 VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLP 116 (171)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHH
T ss_pred ceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEeccccccCCCCCCcHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999995 99999999999999999999999997 7
Q ss_pred HhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 79 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
+||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 117 ~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 117 QLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp HHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999996
No 32
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=6.4e-45 Score=247.44 Aligned_cols=118 Identities=41% Similarity=0.949 Sum_probs=112.8
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccc-ccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILK-EQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~-~~W~p~~~l~~il~~i~~ 79 (119)
|++|+++|. |++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|. ++|+|++++.+||.+|++
T Consensus 32 l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ 110 (154)
T 1c4z_D 32 LLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIA 110 (154)
T ss_dssp SSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHH
T ss_pred hheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCEEECCCCCCCCCCCCCcHHHHHHHHHH
Confidence 579999998 999999999999999999999999999999999999999999999999996 899999999999999999
Q ss_pred hhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 80 LLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
+|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 111 ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 111 LVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp HHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred HHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999974
No 33
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=4e-44 Score=247.40 Aligned_cols=118 Identities=32% Similarity=0.738 Sum_probs=114.6
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEec-cccccccc-CCCceeccccc-ccCCCcccHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKT-KVFHPNIN-SNGNICLDILK-EQWSPALTISKVLLSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t-~i~Hpnv~-~~g~ic~~~l~-~~W~p~~~l~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.| +||||||+ .+|+||+++|. ++|+|+++|.+||.+|
T Consensus 47 l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si 126 (172)
T 2y9m_A 47 LSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAV 126 (172)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHH
T ss_pred hhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHH
Confidence 579999999999999999999999999999999999999999 99999996 79999999998 8999999999999999
Q ss_pred HHhhcCCCCCCCccHHHHHHHHh-CHHHHHHHHHHHHHHhcC
Q 033452 78 CSLLTDPNPDDPLVPEIAHMCKT-DKTKYESSARSWTQKYAM 118 (119)
Q Consensus 78 ~~ll~~p~~~~~~n~~aa~~~~~-~~~~f~~~~~~~~~k~a~ 118 (119)
+++|.+|++++|+|.+||++|++ |+++|.++||+|+++++.
T Consensus 127 ~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~~~ 168 (172)
T 2y9m_A 127 WRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERER 168 (172)
T ss_dssp HHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 999999999999999873
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-43 Score=241.88 Aligned_cols=114 Identities=35% Similarity=0.762 Sum_probs=111.2
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 34 l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~l 112 (160)
T 1y8x_A 34 LLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYL 112 (160)
T ss_dssp TTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred cceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCCCeEEcccchhhccCCCCHHHHHHHHHHH
Confidence 57999988 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHH
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQK 115 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k 115 (119)
|.+|++++|+|.+||++|++|+++|.++||++++.
T Consensus 113 l~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 113 FLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp HHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred HhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999874
No 35
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1.5e-43 Score=246.67 Aligned_cols=118 Identities=35% Similarity=0.789 Sum_probs=113.5
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccc-------------ccCCCc
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILK-------------EQWSPA 67 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~-------------~~W~p~ 67 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+++|+||+++|. ++|+|+
T Consensus 37 l~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~ 116 (183)
T 3rz3_A 37 LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPT 116 (183)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCTTSBBCCTTC--------------CCCCTT
T ss_pred hhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCCCCcEehhhcCcccccccccccccCCCCCc
Confidence 5799999999999999999999999999999999999999999999999999999999996 789999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHh------CHHHHHHHHHHHHHHhcC
Q 033452 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMCKT------DKTKYESSARSWTQKYAM 118 (119)
Q Consensus 68 ~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~------~~~~f~~~~~~~~~k~a~ 118 (119)
++|.+||.+|+++|.+||+++|+|.+||++|++ |+++|+++||+++++++.
T Consensus 117 ~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~v~~s~~ 173 (183)
T 3rz3_A 117 QNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKV 173 (183)
T ss_dssp CCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 789999999999999863
No 36
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-43 Score=243.76 Aligned_cols=114 Identities=34% Similarity=0.694 Sum_probs=109.9
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccc-cCCCceeccccc--ccCCCcccHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNI-NSNGNICLDILK--EQWSPALTISKVLLSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv-~~~g~ic~~~l~--~~W~p~~~l~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||| +.+|+||+++|. ++|+|+++|.+||.+|
T Consensus 52 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI 131 (169)
T 1yrv_A 52 MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLAL 131 (169)
T ss_dssp SCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHH
T ss_pred cccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999 789999999998 8999999999999999
Q ss_pred HHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHH
Q 033452 78 CSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQK 115 (119)
Q Consensus 78 ~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k 115 (119)
+++|.+|++++|+|.+||++|++|+++|.++ |+++++
T Consensus 132 ~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 132 QVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp HHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred HHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 9999999999999999999999999999999 888764
No 37
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.4e-43 Score=243.64 Aligned_cols=114 Identities=34% Similarity=0.730 Sum_probs=111.4
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 54 l~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~l 132 (180)
T 2nvu_C 54 LLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYL 132 (180)
T ss_dssp TTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHH
T ss_pred ccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHH
Confidence 57999988 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHH
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQK 115 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k 115 (119)
|.+|++++|+|.+||++|++|+++|.++||++++.
T Consensus 133 l~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 133 FLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp HHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred HhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999874
No 38
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.4e-43 Score=244.72 Aligned_cols=112 Identities=38% Similarity=0.912 Sum_probs=81.9
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccccc-------------ccCCCc
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILK-------------EQWSPA 67 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~-------------~~W~p~ 67 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|. ++|+|+
T Consensus 47 l~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~ 126 (172)
T 2awf_A 47 LYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPI 126 (172)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCGGGSCC---------CTTSCCTT
T ss_pred ccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCCCCcEehhhcCCcccccccccccCCCCCCc
Confidence 5799999999999999999999999999999999999999999999999999999999996 689999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHH-HHHHHHHHH
Q 033452 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKT-KYESSARSW 112 (119)
Q Consensus 68 ~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~-~f~~~~~~~ 112 (119)
++|.+||.+|++||.+|++++|+|.+||++|++|++ +|+++||+|
T Consensus 127 ~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 127 HTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp CCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 999999999999999999999999999999999999 999999975
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.9e-42 Score=265.03 Aligned_cols=119 Identities=81% Similarity=1.403 Sum_probs=116.9
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+++|.||+++|.++|+|++|+.+||.+|+++
T Consensus 32 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vL~~i~~l 111 (399)
T 4ddg_A 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSL 111 (399)
T ss_dssp EEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCCeEeCcccccCCCccccHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcCC
Q 033452 81 LTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~~ 119 (119)
|.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 112 l~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 112 LCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp HHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred HcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999974
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3.8e-42 Score=240.67 Aligned_cols=113 Identities=33% Similarity=0.678 Sum_probs=110.1
Q ss_pred eeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHhhc
Q 033452 3 HWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLT 82 (119)
Q Consensus 3 ~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ll~ 82 (119)
+|+++|. |++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++|.
T Consensus 65 ~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~ 143 (190)
T 3o2u_A 65 KLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFL 143 (190)
T ss_dssp EEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHh
Confidence 8999997 788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 83 DPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 83 ~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
+||+++|+|.+||++|++|+++|.++||+|+++.
T Consensus 144 ~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~ 177 (190)
T 3o2u_A 144 EPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177 (190)
T ss_dssp SCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred CCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999654
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.2e-39 Score=224.00 Aligned_cols=110 Identities=28% Similarity=0.664 Sum_probs=104.1
Q ss_pred CeeeEEEEeCCCCCCCC--CcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHH-HHH
Q 033452 1 MFHWQATIIGPNDSPYA--GGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVL-LSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~--g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il-~~i 77 (119)
|++|+++|.||++|||+ ||.|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.++|+|++++.++| ..|
T Consensus 49 l~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l 128 (167)
T 4ds2_A 49 IYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVL 128 (167)
T ss_dssp TTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHH
Confidence 57999999999999999 999999999999999999999999999999999999999999999999999999975 456
Q ss_pred HHhhcC--CCCCCCccHHHHHHHHhCHHHHHHHHH
Q 033452 78 CSLLTD--PNPDDPLVPEIAHMCKTDKTKYESSAR 110 (119)
Q Consensus 78 ~~ll~~--p~~~~~~n~~aa~~~~~~~~~f~~~~~ 110 (119)
++++.+ |++++|+|.|||++|++|+++|+++||
T Consensus 129 ~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 129 DRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp HHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred HHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 777764 899999999999999999999999998
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=5.4e-39 Score=238.99 Aligned_cols=118 Identities=36% Similarity=0.690 Sum_probs=111.9
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc-----cccccccCCCceeccccc-------ccCCCcc
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK-----VFHPNINSNGNICLDILK-------EQWSPAL 68 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~g~ic~~~l~-------~~W~p~~ 68 (119)
|+.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ ||||||+.+|+||+++|. ++|+|++
T Consensus 109 l~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~ 188 (323)
T 3ceg_A 109 LDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQT 188 (323)
T ss_dssp TTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTT
T ss_pred ccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCc
Confidence 5789999999999999999999999999999999999999998 999999999999999996 6899999
Q ss_pred -cHHHHHHHHHHhhc--CCCCCCCccHHH--HHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 69 -TISKVLLSICSLLT--DPNPDDPLVPEI--AHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 69 -~l~~il~~i~~ll~--~p~~~~~~n~~a--a~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
+|.+||.+|++||. +|++++|+|.++ +.++.+|+++|.++||+|+.+|||
T Consensus 189 stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~ 243 (323)
T 3ceg_A 189 SSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAM 243 (323)
T ss_dssp CCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 89999999999996 677789999987 578999999999999999999996
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=6.5e-39 Score=218.17 Aligned_cols=100 Identities=25% Similarity=0.512 Sum_probs=94.2
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCce---ecccccccCCCcccHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNI---CLDILKEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~i---c~~~l~~~W~p~~~l~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+| |+++|. +|+|+++|.+||.+|
T Consensus 54 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI 132 (156)
T 2q0v_A 54 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISL 132 (156)
T ss_dssp CCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHH
T ss_pred ceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999 888886 699999999999999
Q ss_pred HHhhcCCCCCCCccHHHHHHHHhC
Q 033452 78 CSLLTDPNPDDPLVPEIAHMCKTD 101 (119)
Q Consensus 78 ~~ll~~p~~~~~~n~~aa~~~~~~ 101 (119)
+++|.+|++++++|++||++|++|
T Consensus 133 ~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 133 RQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp HHHTTSTTTTTCCCCCTTCBC---
T ss_pred HHHHhCCCCCCcCChHHHHHhhhC
Confidence 999999999999999999999875
No 44
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=7.6e-37 Score=208.58 Aligned_cols=95 Identities=31% Similarity=0.543 Sum_probs=91.4
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccccccc-CCCceeccccc--ccCCCcccHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDILK--EQWSPALTISKVLLSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~-~~g~ic~~~l~--~~W~p~~~l~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+ .+|+||+++|. ++|+|+++|++||.+|
T Consensus 58 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI 137 (160)
T 2a4d_A 58 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQEL 137 (160)
T ss_dssp CCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHH
T ss_pred ceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999 69999999997 8999999999999999
Q ss_pred HHhhc-CCCCCCCccHHHH
Q 033452 78 CSLLT-DPNPDDPLVPEIA 95 (119)
Q Consensus 78 ~~ll~-~p~~~~~~n~~aa 95 (119)
+++|. +||+++|+|.|||
T Consensus 138 ~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 138 RRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp HHHHTSTTTTTCCCCCTTC
T ss_pred HHHHccCCCCCCCCChhhc
Confidence 99995 7999999999987
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=7.2e-38 Score=209.28 Aligned_cols=97 Identities=29% Similarity=0.595 Sum_probs=92.3
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCC-Cce--ecccccccCCCcccHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN-GNI--CLDILKEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~-g~i--c~~~l~~~W~p~~~l~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+ |+| |++++. +|+|++++.+||.+|
T Consensus 39 l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i 117 (138)
T 1jat_B 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDL 117 (138)
T ss_dssp CCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHH
T ss_pred ceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999985 999 899885 899999999999999
Q ss_pred HHhhcCCCCCCCccHHHHHHH
Q 033452 78 CSLLTDPNPDDPLVPEIAHMC 98 (119)
Q Consensus 78 ~~ll~~p~~~~~~n~~aa~~~ 98 (119)
+++|.+||+++++|++||++|
T Consensus 118 ~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 118 RKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp HHHHTSHHHHTSCCCCTTCBC
T ss_pred HHHHcCCCCCCCCCcchhhcC
Confidence 999999999999999988654
No 46
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=208.71 Aligned_cols=95 Identities=31% Similarity=0.543 Sum_probs=91.4
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccccccccc-CCCceeccccc--ccCCCcccHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDILK--EQWSPALTISKVLLSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~-~~g~ic~~~l~--~~W~p~~~l~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+ .+|+||+++|. ++|+|+++|.+||.+|
T Consensus 68 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI 147 (170)
T 2hlw_A 68 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQEL 147 (170)
T ss_dssp CCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHH
T ss_pred ceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999 69999999997 8999999999999999
Q ss_pred HHhhc-CCCCCCCccHHHH
Q 033452 78 CSLLT-DPNPDDPLVPEIA 95 (119)
Q Consensus 78 ~~ll~-~p~~~~~~n~~aa 95 (119)
+++|. +||+++|+|.|||
T Consensus 148 ~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 148 RRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp HHHHHSTTTSSSCCCSSCC
T ss_pred HHHHccCCCCCCCCCcccc
Confidence 99997 5999999999987
No 47
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-35 Score=195.71 Aligned_cols=87 Identities=39% Similarity=0.756 Sum_probs=80.4
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-ccccccCCCceecccccccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKV-FHPNINSNGNICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ 79 (119)
+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+.+|+||+++|.++|+|++++.+||.+|++
T Consensus 35 l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ 114 (125)
T 2fo3_A 35 IRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIIS 114 (125)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHH
T ss_pred hhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred hhcCCCCC
Q 033452 80 LLTDPNPD 87 (119)
Q Consensus 80 ll~~p~~~ 87 (119)
+|.+|+..
T Consensus 115 ll~~p~~~ 122 (125)
T 2fo3_A 115 MLSSAKEK 122 (125)
T ss_dssp HHC-----
T ss_pred HHhCcccc
Confidence 99998764
No 48
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.9e-35 Score=195.10 Aligned_cols=86 Identities=38% Similarity=0.763 Sum_probs=83.2
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-ccccccCCCceecccccccCCCcccHHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKV-FHPNINSNGNICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ 79 (119)
+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++ |||||+.+|+||+++|.++|+|++++.+||.+|++
T Consensus 49 l~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~s 128 (136)
T 2h2y_A 49 IRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIIS 128 (136)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHH
T ss_pred ccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCCCCEEECccccCCCCCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred hhcCCCC
Q 033452 80 LLTDPNP 86 (119)
Q Consensus 80 ll~~p~~ 86 (119)
+|.+|+.
T Consensus 129 ll~~p~~ 135 (136)
T 2h2y_A 129 MLSSAKE 135 (136)
T ss_dssp HHSSSCC
T ss_pred HHhCcCc
Confidence 9999863
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.1e-34 Score=190.57 Aligned_cols=82 Identities=41% Similarity=0.840 Sum_probs=79.9
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccc--cccccCCCceecccccccCCCcccHHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVF--HPNINSNGNICLDILKEQWSPALTISKVLLSIC 78 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~--Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~ 78 (119)
|++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++ ||||+.+|+||+++|.++|+|++++++||.+|+
T Consensus 53 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~ 132 (136)
T 2a7l_A 53 ITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSII 132 (136)
T ss_dssp CEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHH
T ss_pred cceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred Hhhc
Q 033452 79 SLLT 82 (119)
Q Consensus 79 ~ll~ 82 (119)
++|.
T Consensus 133 slL~ 136 (136)
T 2a7l_A 133 SMLS 136 (136)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 9974
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-32 Score=190.77 Aligned_cols=87 Identities=30% Similarity=0.751 Sum_probs=76.8
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccc---cccCCCcccHHHHHHHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDIL---KEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l---~~~W~p~~~l~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ ||+|+.+|+||+++| .++|+|+++|.+||.+|
T Consensus 43 l~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si 120 (187)
T 2f4w_A 43 ILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGL 120 (187)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCTTSCBC----------CCTTCCHHHHHHHH
T ss_pred cceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--CceeccCCeEeeeccccCccCCCCcCcHHHHHHHH
Confidence 5799999999999999999999999999999999999999998 999999999999999 68999999999999999
Q ss_pred HHhhcCCCCCCC
Q 033452 78 CSLLTDPNPDDP 89 (119)
Q Consensus 78 ~~ll~~p~~~~~ 89 (119)
+++|.+|+++..
T Consensus 121 ~sll~~p~p~~g 132 (187)
T 2f4w_A 121 LSFMVEKGPTLG 132 (187)
T ss_dssp HHHHHSCCCCTT
T ss_pred HHHhcCCCCCCc
Confidence 999999998744
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=4.7e-34 Score=199.06 Aligned_cols=109 Identities=21% Similarity=0.488 Sum_probs=96.3
Q ss_pred CeeeEEEEeCC-CCCCCCC-----------cEEEEEEEcCCCCCCCCCeeEEecccccc-cccCCCceeccccc-ccCCC
Q 033452 1 MFHWQATIIGP-NDSPYAG-----------GVFVVTIHFPPDYPFKPPKVAFKTKVFHP-NINSNGNICLDILK-EQWSP 66 (119)
Q Consensus 1 ~~~w~~~i~gp-~~t~y~g-----------~~f~~~i~fp~~yP~~pP~v~f~t~i~Hp-nv~~~g~ic~~~l~-~~W~p 66 (119)
|++|+++|.|| ++|||+| |.|+++|.||++||++||+|+|.+++||| ||+.+|.||+++|. ++|+|
T Consensus 59 l~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP 138 (186)
T 1zuo_A 59 LYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSS 138 (186)
T ss_dssp EEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCT
T ss_pred cceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCC
Confidence 57999999998 9999998 89999999999999999999999999999 69999999999996 78999
Q ss_pred cccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 67 ALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 67 ~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
+++|.+||.+|+++|.+|+... .+++++++|.++++..+.+.+
T Consensus 139 ~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~~~~~~ 181 (186)
T 1zuo_A 139 AYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQSYNSI 181 (186)
T ss_dssp TSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHHHHHHH
Confidence 9999999999999999986532 344556777777777776654
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.90 E-value=1.7e-24 Score=146.83 Aligned_cols=75 Identities=19% Similarity=0.349 Sum_probs=69.7
Q ss_pred CeeeEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEEecc-cccccccCCCceecccc-cc---cCC
Q 033452 1 MFHWQATIIGPNDSPYAGG----------VFVVTIHFPPDYPFKPPKVAFKTK-VFHPNINSNGNICLDIL-KE---QWS 65 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~----------~f~~~i~fp~~yP~~pP~v~f~t~-i~Hpnv~~~g~ic~~~l-~~---~W~ 65 (119)
++.|.+.+.||.||+|+|| .|.+++.||++||.+||+|+|.+. ++||||+.+|+||++++ .. .|+
T Consensus 55 ~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~ 134 (172)
T 2z6o_A 55 DNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNV 134 (172)
T ss_dssp TCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHT
T ss_pred cceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCCCCcEechhhccccccccC
Confidence 4789999999999999999 999999999999999999999987 99999999999999999 43 466
Q ss_pred CcccHHHHHH
Q 033452 66 PALTISKVLL 75 (119)
Q Consensus 66 p~~~l~~il~ 75 (119)
|+++|..+|.
T Consensus 135 P~~~IahiL~ 144 (172)
T 2z6o_A 135 PKFGLAHLMA 144 (172)
T ss_dssp TSCCHHHHHH
T ss_pred CccCHHHHHh
Confidence 9999999984
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.83 E-value=1.1e-20 Score=128.64 Aligned_cols=85 Identities=32% Similarity=0.556 Sum_probs=74.6
Q ss_pred eeEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCCeeEEecc----------cc-cccccCCCceecccccccCCC-c
Q 033452 3 HWQATIIGPNDSPYAGGV---FVVTIHFPPDYPFKPPKVAFKTK----------VF-HPNINSNGNICLDILKEQWSP-A 67 (119)
Q Consensus 3 ~w~~~i~gp~~t~y~g~~---f~~~i~fp~~yP~~pP~v~f~t~----------i~-Hpnv~~~g~ic~~~l~~~W~p-~ 67 (119)
++-..+.|.-.++|+|++ |.+.|.||++||++||.|.|.++ |+ |||||++|+||+++| ++|+| +
T Consensus 62 ~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL-~~W~p~~ 140 (162)
T 3r3q_A 62 QLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDPAA 140 (162)
T ss_dssp EEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGG-GSCCGGG
T ss_pred heEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCccc-ccCCCCc
Confidence 345566666668999999 88999999999999999988651 77 999999999999999 57999 6
Q ss_pred ccHHHHHHHHHHhhcCCCCCC
Q 033452 68 LTISKVLLSICSLLTDPNPDD 88 (119)
Q Consensus 68 ~~l~~il~~i~~ll~~p~~~~ 88 (119)
.++.++|.+|+++|.+|+++.
T Consensus 141 s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 141 MNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp CCHHHHHHHHHHTTSCCCCCC
T ss_pred CcHHHHHHHHHHHhcCCCCCC
Confidence 799999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.67 E-value=1.3e-17 Score=110.99 Aligned_cols=69 Identities=28% Similarity=0.545 Sum_probs=61.3
Q ss_pred eeEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEEecc-cccccccCCCceecccccccCCC-----
Q 033452 3 HWQATIIGPNDSPYAGG----------VFVVTIHFPPDYPFKPPKVAFKTK-VFHPNINSNGNICLDILKEQWSP----- 66 (119)
Q Consensus 3 ~w~~~i~gp~~t~y~g~----------~f~~~i~fp~~yP~~pP~v~f~t~-i~Hpnv~~~g~ic~~~l~~~W~p----- 66 (119)
.|...+.||.||+|.|+ .|.+++.||.+||.+||+|+|.+. .+||+++.+|+||++++ |+|
T Consensus 59 dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW~~n 135 (168)
T 3kpa_A 59 HWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTH---FFPLWARN 135 (168)
T ss_dssp CCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTTEECCCTT---HHHHHHHT
T ss_pred CeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCCcEEeccc---cchhhHhc
Confidence 59999999999999999 999999999999999999999985 89999999999999986 544
Q ss_pred --cccHHHHH
Q 033452 67 --ALTISKVL 74 (119)
Q Consensus 67 --~~~l~~il 74 (119)
.++|...|
T Consensus 136 ~P~fGiahal 145 (168)
T 3kpa_A 136 VPYFGISHVL 145 (168)
T ss_dssp TTTCCHHHHH
T ss_pred CCchhHHHHH
Confidence 44555554
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.63 E-value=5e-16 Score=103.99 Aligned_cols=77 Identities=22% Similarity=0.526 Sum_probs=67.8
Q ss_pred CeeeEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCCeeEEecc------cccccccCCCceecccccccCCC-cccHH
Q 033452 1 MFHWQATIIGPNDSPYAGGVFVV--TIHFPPDYPFKPPKVAFKTK------VFHPNINSNGNICLDILKEQWSP-ALTIS 71 (119)
Q Consensus 1 ~~~w~~~i~gp~~t~y~g~~f~~--~i~fp~~yP~~pP~v~f~t~------i~Hpnv~~~g~ic~~~l~~~W~p-~~~l~ 71 (119)
|+.|.++|. .+|+|++|.+ .|.||++||++||.| |.++ ..|||||.+|+||++.|. +|++ ..+|.
T Consensus 53 LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~-~W~~~~snL~ 126 (146)
T 3obq_A 53 LMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH-EWKHPQSDLL 126 (146)
T ss_dssp EEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH-TCCTTTCCHH
T ss_pred EEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc-ccCCCCCCHH
Confidence 467888888 4799999995 999999999999999 6554 489999999999999994 5998 78999
Q ss_pred HHHHHHHHhhcC
Q 033452 72 KVLLSICSLLTD 83 (119)
Q Consensus 72 ~il~~i~~ll~~ 83 (119)
+++..+++.|.+
T Consensus 127 ~ll~~l~~~F~~ 138 (146)
T 3obq_A 127 GLIQVMIVVFGD 138 (146)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999885
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.46 E-value=0.016 Score=36.91 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.4
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEec
Q 033452 18 GGVFVVTIHFPPDYPFKPPKVAFKT 42 (119)
Q Consensus 18 g~~f~~~i~fp~~yP~~pP~v~f~t 42 (119)
.-.+.+.+.+|++||.+||.+....
T Consensus 54 ~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 54 TVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred ceeEEEEEEeCCCCCCCCceEEEEc
Confidence 4478899999999999999997654
No 57
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=95.91 E-value=0.081 Score=34.91 Aligned_cols=23 Identities=13% Similarity=0.378 Sum_probs=20.8
Q ss_pred EEEEEEEcCCCCCCCCCeeEEec
Q 033452 20 VFVVTIHFPPDYPFKPPKVAFKT 42 (119)
Q Consensus 20 ~f~~~i~fp~~yP~~pP~v~f~t 42 (119)
.+.++|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999997654
No 58
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.72 E-value=0.24 Score=31.31 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.1
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEe
Q 033452 19 GVFVVTIHFPPDYPFKPPKVAFK 41 (119)
Q Consensus 19 ~~f~~~i~fp~~yP~~pP~v~f~ 41 (119)
-.+.+.+.+|.+||..+|.|...
T Consensus 56 ~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 56 IPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp CEEEEEEEECSSTTSSCCCCCCC
T ss_pred eEEEEEEECCCCCCCCCCeEEEE
Confidence 47899999999999999998654
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.13 Score=32.99 Aligned_cols=25 Identities=24% Similarity=0.681 Sum_probs=21.5
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEec
Q 033452 18 GGVFVVTIHFPPDYPFKPPKVAFKT 42 (119)
Q Consensus 18 g~~f~~~i~fp~~yP~~pP~v~f~t 42 (119)
.-.+.+.+.+|.+||.++|.|...+
T Consensus 61 ~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 61 ESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred ceEEEEEEECCCCCCCCCCeEEEec
Confidence 3478899999999999999998764
No 60
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.18 E-value=0.18 Score=31.87 Aligned_cols=25 Identities=20% Similarity=0.691 Sum_probs=21.7
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEecc
Q 033452 19 GVFVVTIHFPPDYPFKPPKVAFKTK 43 (119)
Q Consensus 19 ~~f~~~i~fp~~yP~~pP~v~f~t~ 43 (119)
-.+.+.|.+|++||..+|.|...+.
T Consensus 59 ~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 59 VCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred eeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 4788999999999999999987753
No 61
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.83 E-value=0.23 Score=32.43 Aligned_cols=25 Identities=20% Similarity=0.503 Sum_probs=21.3
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEecc
Q 033452 19 GVFVVTIHFPPDYPFKPPKVAFKTK 43 (119)
Q Consensus 19 ~~f~~~i~fp~~yP~~pP~v~f~t~ 43 (119)
-.+.+.+.+|.+||..+|.+.....
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred ceEEEEEECCCCCCCCCCeEEEEcc
Confidence 3688999999999999999986643
No 62
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=93.81 E-value=0.24 Score=33.89 Aligned_cols=53 Identities=17% Similarity=0.426 Sum_probs=41.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceecccccccCCCcccHHHHHHHHHHhhcC
Q 033452 17 AGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTD 83 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ll~~ 83 (119)
.|....++|.++.+||.++|.+...-|. |. .-.|.+..++.+++.+.+..+..
T Consensus 36 ~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------------~~~w~~~ssL~~v~~qF~~~Le~ 88 (186)
T 3zqs_A 36 SGREHLITLKLKAKYPAESPDYFVDFPV--PF------------CASWTPQSSLISIYSQFLAAIES 88 (186)
T ss_dssp TSCEEEEEEECCTTTTTSCCEEECCCSS--CC------------CCCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------------ccccCCCccHHHHHHHHHHHHHH
Confidence 5778889999999999999988765553 11 14799999999998877776654
No 63
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=92.61 E-value=0.082 Score=33.84 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.5
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEe
Q 033452 19 GVFVVTIHFPPDYPFKPPKVAFK 41 (119)
Q Consensus 19 ~~f~~~i~fp~~yP~~pP~v~f~ 41 (119)
-.+.+.|.+|.+||.++|.|...
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEe
Confidence 46889999999999999999874
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=91.38 E-value=0.036 Score=34.79 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 84 PNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 84 p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.....|.+.+.|++|.++++.|.+.||.|+.-+|
T Consensus 21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a 54 (108)
T 2cwb_A 21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDA 54 (108)
T ss_dssp ----------------------------------
T ss_pred cccCCchhHHHHHHHHhchhccccccccccccCc
Confidence 3445789999999999999999999999996665
No 65
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=50.24 E-value=25 Score=20.25 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=32.1
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 77 ICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 77 i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
|+.|+..-++...+.+++..+..+=.+.|...+-..+.+.|
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lA 51 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLA 51 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444667789999999988888999999988888776
No 66
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=43.47 E-value=24 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYPF-----KPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~-----~pP~v~f~ 41 (119)
+.|.|.|+-.+|--||. .||.|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 57899999999999998 78888775
No 67
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=41.15 E-value=18 Score=18.80 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCCCCC-ccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 74 LLSICSLLTDPNPDDP-LVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 74 l~~i~~ll~~p~~~~~-~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
|..|..-+.+|+ +| -+.++....+.|+..-....|..+.+|++
T Consensus 3 LqqLl~tlksp~--sp~qqqqvl~ILksnPqLMAAfIkQR~~~y~~ 46 (47)
T 1zoq_C 3 LQDLLRTLKSPS--SPQQQQQVLNILKSNPQLMAAFIKQRTAKYVA 46 (47)
T ss_dssp HHHHHHTCCSCC--CHHHHHHHHHHHHTCHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcc
Confidence 444445555554 33 55667778899999988888888888765
No 68
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=39.05 E-value=32 Score=18.92 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=17.5
Q ss_pred ccHHHHHHHHhCHHHHHHHH
Q 033452 90 LVPEIAHMCKTDKTKYESSA 109 (119)
Q Consensus 90 ~n~~aa~~~~~~~~~f~~~~ 109 (119)
.|++.+.+..+|+++|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 67889999999999998865
No 69
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=37.36 E-value=31 Score=19.65 Aligned_cols=21 Identities=5% Similarity=0.126 Sum_probs=18.7
Q ss_pred ccHHHHHHHHhCHHHHHHHHH
Q 033452 90 LVPEIAHMCKTDKTKYESSAR 110 (119)
Q Consensus 90 ~n~~aa~~~~~~~~~f~~~~~ 110 (119)
.|++.+.+..+|+++|.+...
T Consensus 39 ~NPqL~q~I~~n~e~Fl~ll~ 59 (72)
T 1pve_A 39 ENPQLLQQISQHQEHFIQMLN 59 (72)
T ss_dssp TCHHHHHHHHTTHHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHHc
Confidence 688999999999999998874
No 70
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=33.65 E-value=49 Score=26.09 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.0
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 92 PEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 92 ~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.|+..+-.+|++.|.++|++...++.
T Consensus 278 ee~~~l~~~dp~~~~~~~~~Sm~rhv 303 (552)
T 2fkn_A 278 DEADRLRQDTPELYVRLAKQSMKKHV 303 (552)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 56677778999999999999988764
No 71
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=33.38 E-value=50 Score=26.04 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.0
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 92 PEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 92 ~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.|+..+-.+|++.|.++|++...++.
T Consensus 277 ee~~~l~~~dp~~~~~~~~~Sm~rhv 302 (551)
T 1x87_A 277 DEAAELRARDPKQYIARAKQSIAAHV 302 (551)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 56677778999999999999988764
No 72
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=33.03 E-value=51 Score=26.03 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=22.0
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhc
Q 033452 92 PEIAHMCKTDKTKYESSARSWTQKYA 117 (119)
Q Consensus 92 ~~aa~~~~~~~~~f~~~~~~~~~k~a 117 (119)
.|+..+-.+|++.|.++|++...++.
T Consensus 282 ee~~~l~~~dp~~~~~~~~~Sm~rhv 307 (557)
T 1uwk_A 282 EQYRDRAQTEPAAVVKAAKQSMAVHV 307 (557)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 56677778999999999999988764
No 73
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=32.18 E-value=51 Score=20.47 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.1
Q ss_pred eEEEEeCCCCCCCCCcEEEEEEEcCCC
Q 033452 4 WQATIIGPNDSPYAGGVFVVTIHFPPD 30 (119)
Q Consensus 4 w~~~i~gp~~t~y~g~~f~~~i~fp~~ 30 (119)
.|+.+.|++..+=+|..+.+.+.|-+.
T Consensus 82 ~HvML~gl~~~l~~G~~v~ltL~Fe~~ 108 (120)
T 2k6w_A 82 YHFMLLGLKRPLKAGEEVELDLLFAGG 108 (120)
T ss_dssp EEEEEEEESSCBCTTCEEEEEEEETTT
T ss_pred eEEEEeCCCCCCCCCCEEEEEEEECCC
Confidence 578899988888899999999999653
No 74
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=30.30 E-value=53 Score=23.19 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=35.5
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|..-|..-+ ++-+..|+.|.+.|.++.+..-.++
T Consensus 106 Wldp~~~~~~a~~I~~~L~~~d------P~~a~~y~~N~~~~~~~L~~ld~~~ 152 (282)
T 3mfq_A 106 WFSIPLYKSAVAVASEELQKLL------PAKAEMIQKNTEKYQAQLDDLHAWV 152 (282)
T ss_dssp GGSHHHHHHHHHHHHHHHTTTC------GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhC------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666677788888988888743 3456688899999998887776544
No 75
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=28.69 E-value=57 Score=18.06 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=22.1
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 91 VPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 91 n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
.+||-...++=|--...+||.-+++||.
T Consensus 7 t~EAe~~LkkIP~FVR~kvrr~tE~~Ar 34 (63)
T 2kru_A 7 TAEAEKMLGKVPFFVRKKVRKNTDNYAR 34 (63)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3567777777777788899999999984
No 76
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=27.66 E-value=38 Score=24.05 Aligned_cols=47 Identities=13% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|..-|.. ++++-+..|+.|.+.|.++.+....++
T Consensus 135 Wldp~~~~~~a~~I~~~L~~------~dP~~a~~y~~N~~~~~~~L~~Ld~~~ 181 (291)
T 1pq4_A 135 WLSPTLVKRQATTIAKELAE------LDPDNRDQYEANLAAFLAELERLNQEL 181 (291)
T ss_dssp GGCHHHHHHHHHHHHHHHHH------HCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH------HCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666677788888888887 334456688999999999888766554
No 77
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=27.23 E-value=17 Score=16.10 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=7.0
Q ss_pred CCCeeEEecccccc
Q 033452 34 KPPKVAFKTKVFHP 47 (119)
Q Consensus 34 ~pP~v~f~t~i~Hp 47 (119)
..|.-.|..+-|||
T Consensus 6 tlpenyfserpyhp 19 (26)
T 2jrw_A 6 TLPENYFSERPYHP 19 (26)
T ss_dssp CCSSSSCCSSSCCS
T ss_pred ccchhhcccCCCCC
Confidence 33444455555665
No 78
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=26.98 E-value=36 Score=23.91 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=21.8
Q ss_pred CCcEEEEEEEcCCCCC-------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP-------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP-------~~pP~v~f~ 41 (119)
+.|.|.|+-.+|--|| ..||.|.|.
T Consensus 134 ~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~ 165 (241)
T 2bum_B 134 DNGYYVFRTIKPGPYPWRNRINEWRPAHIHFS 165 (241)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEecCCccccCCCCCCCcCceEEEE
Confidence 5799999999999998 478888776
No 79
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form, structural proteomics in europe, spine, structur genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1 PDB: 2jqa_A
Probab=25.95 E-value=54 Score=21.19 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCCCCCcEEEEEEEcCCC
Q 033452 4 WQATIIGPNDSPYAGGVFVVTIHFPPD 30 (119)
Q Consensus 4 w~~~i~gp~~t~y~g~~f~~~i~fp~~ 30 (119)
.|+.+.|++..+=+|..+.+.+.|-+.
T Consensus 107 ~HvML~gL~~~l~~G~~v~lTL~Fe~~ 133 (149)
T 1x9l_A 107 DHVMLMGLKRPLKVGETVNITLKATDG 133 (149)
T ss_dssp SEEEEEEECSCCCTTEEEEEEECBTTT
T ss_pred eEEEEeCCCCCCCCCCEEEEEEEECCC
Confidence 478899998888899999999999654
No 80
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=25.62 E-value=40 Score=24.70 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.4
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-.+|..|| ..||.|.|.
T Consensus 187 ~~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~ 229 (312)
T 2xsu_A 187 VNGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYF 229 (312)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEE
Confidence 5799999999999998 568888775
No 81
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=25.49 E-value=33 Score=23.23 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=35.4
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEecc--cccccccCCCceecccccccCCCcccHHHHHHHHH
Q 033452 18 GGVFVVTIHFPPDYPFKPPKVAFKTK--VFHPNINSNGNICLDILKEQWSPALTISKVLLSIC 78 (119)
Q Consensus 18 g~~f~~~i~fp~~yP~~pP~v~f~t~--i~Hpnv~~~g~ic~~~l~~~W~p~~~l~~il~~i~ 78 (119)
|....+.|.+....|...|.++|.-+ .-++.= -++.--...|.+..++.+=|..|-
T Consensus 123 g~~vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr-----~~~~~nl~~Wd~~~~i~~NL~~il 180 (186)
T 3zqs_A 123 GNNVSINIEVDPRHPTMLPECFFLGADHVVKPLG-----IKLSRNIHLWDPENSVLQNLKDVL 180 (186)
T ss_dssp ETTEEEEEECCTTSTTSCCEEEEEECHHHHHHHH-----HHHHHHGGGCCTTSCHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCcCCceEEECChHHHHHHH-----HHHhhhHhhcCCCCCHHHHHHHHH
Confidence 44467889999999999999999843 211110 011101157999988766655543
No 82
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=25.46 E-value=45 Score=23.64 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=35.0
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|..-|.. ++++-+..|+.|.+.|.++.+....++
T Consensus 124 Wldp~~~~~~a~~I~~~L~~------~dP~~a~~y~~N~~~~~~~L~~Ld~~~ 170 (286)
T 3gi1_A 124 WTDPVLAGEEAVNIAKELGR------LDPKHKDSYTKNAKAFKKEAEQLTEEY 170 (286)
T ss_dssp GGSHHHHHHHHHHHHHHHHH------HCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHH------HChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777788888888886 334456788899999998888776554
No 83
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=25.38 E-value=1.5e+02 Score=19.71 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=29.8
Q ss_pred eeeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc
Q 033452 2 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK 43 (119)
Q Consensus 2 ~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~t~ 43 (119)
.+|.+.+.|+.+.-...-+=++...+.+.||. |.-.+..+
T Consensus 33 H~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 33 HLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp EEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred EEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 58999999987765555677788889999975 55555443
No 84
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=25.17 E-value=41 Score=24.61 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.6
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-..|-.|| ..||.|.|.
T Consensus 183 ~~G~y~F~TI~Pg~Y~~p~dGp~g~lL~~~grh~~RpaHIHf~ 225 (311)
T 2azq_A 183 AEGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHVHFF 225 (311)
T ss_dssp TTCEEEEEEECCCCEECCTTSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CCceEEEEEEcCCCcCCCCCCcHHHHHHhhhccCCCCceEEEE
Confidence 5799999999999998 568888885
No 85
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=24.96 E-value=42 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-.+|.-|| ..||.|.|.
T Consensus 183 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 225 (293)
T 1tmx_A 183 PDGGYAFWAITPTPYPIPHDGPVGRMLAATGRSPMRASHLHFM 225 (293)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECCCcccCCCCCchHHHHHhcccCCCCCceEEEE
Confidence 5789999999999998 458888776
No 86
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=24.33 E-value=44 Score=24.21 Aligned_cols=25 Identities=28% Similarity=0.701 Sum_probs=21.3
Q ss_pred CCcEEEEEEEcCCCCCC------------------CCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYPF------------------KPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~------------------~pP~v~f~ 41 (119)
+.|.|.|+-.+|--||. .||.|.|.
T Consensus 180 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 222 (290)
T 3n9t_A 180 NDGCFAIQTTVPVCYPIPTDGPVGEMLDAANRHAWRPAHLHFM 222 (290)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CCceEEEEEeCCCCcCCCCCCcHHHHHHhccCCCCcCceEEEE
Confidence 56899999999999993 68888775
No 87
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=24.20 E-value=44 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=21.8
Q ss_pred CCcEEEEEEEcCCCCCC-------CCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYPF-------KPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP~-------~pP~v~f~ 41 (119)
+.|.|.|+-.+|--||. .||.|.|.
T Consensus 133 ~~G~y~F~TI~Pg~Yp~p~~~~~~Rp~HIHf~ 164 (238)
T 3t63_M 133 SDGYYSFRTIKPGPAPWRNGPNDWRPAHIYFG 164 (238)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEECCcCccCCCCCCCCcCCeEEEE
Confidence 57899999999999986 78888776
No 88
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=24.08 E-value=46 Score=20.87 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=20.8
Q ss_pred cccCCCceecccccccCCCcccHHHHHHHHHHhh
Q 033452 48 NINSNGNICLDILKEQWSPALTISKVLLSICSLL 81 (119)
Q Consensus 48 nv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ll 81 (119)
.||++|+|-......+.....+..+++..|..++
T Consensus 138 liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll 171 (171)
T 2yzh_A 138 IIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI 171 (171)
T ss_dssp EECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred EEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence 3457888876554334444456777887777654
No 89
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=23.99 E-value=49 Score=23.28 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=34.6
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|..-|.. ++++-+..|+.|.+.|.++.+..-.++
T Consensus 119 Wldp~~~~~~a~~I~~~L~~------~dP~~a~~y~~N~~~~~~~L~~Ld~~~ 165 (284)
T 2prs_A 119 WLSPEIARATAVAIHGKLVE------LMPQSRAKLDANLKDFEAQLASTETQV 165 (284)
T ss_dssp GGCHHHHHHHHHHHHHHHHH------HCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH------hCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666677788888888886 333456688889999998887765554
No 90
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=23.94 E-value=49 Score=23.77 Aligned_cols=47 Identities=13% Similarity=0.297 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|..-|.. ++++-+..|+.|.+.|.++.+....++
T Consensus 135 Wldp~n~~~~a~~I~~~L~~------~DP~~a~~Y~~N~~~~~~~L~~Ld~~~ 181 (312)
T 2o1e_A 135 WLSPVLAQKEVKNITAQIVK------QDPDNKEYYEKNSKEYIAKLQDLDKLY 181 (312)
T ss_dssp GGSHHHHHHHHHHHHHHHHH------HCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHH------hCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677788888888886 334556688899999998887765554
No 91
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=23.60 E-value=68 Score=19.95 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=20.8
Q ss_pred cccCCCceecccccccCCCcccHHHHHHHHHHh
Q 033452 48 NINSNGNICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 48 nv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~l 80 (119)
-||++|+|-...+...+....++.+++..|.+|
T Consensus 124 lID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 124 VIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp EECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred EECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 367888886554444444445677777777654
No 92
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=23.58 E-value=51 Score=22.43 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.2
Q ss_pred cEEEEEEEcCCCCCCC-----CCeeEEe
Q 033452 19 GVFVVTIHFPPDYPFK-----PPKVAFK 41 (119)
Q Consensus 19 ~~f~~~i~fp~~yP~~-----pP~v~f~ 41 (119)
|.|.|+-..|--||.. ||.|.|.
T Consensus 102 G~~~F~TI~Pg~Y~~~~g~~rp~HIH~~ 129 (200)
T 3t63_A 102 GEWTLHTVKPGVVNNAAGVPMAPHINIS 129 (200)
T ss_dssp CSEEEEEECCCCEECTTSCEECSCEEEE
T ss_pred CEEEEEEECCcCcCCCCCCccCCEEEEE
Confidence 8999999999999986 7777665
No 93
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=23.46 E-value=47 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.570 Sum_probs=20.8
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-..|..|| ..||.|.|.
T Consensus 153 ~~G~y~F~TI~Pg~Y~~p~dGp~G~ll~~~grh~~RpaHIH~~ 195 (254)
T 2boy_A 153 ENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWI 195 (254)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECCccccCCCCCcHHHHHHhcccccCCCceEEEE
Confidence 4699999999999887 467888775
No 94
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=23.23 E-value=61 Score=23.30 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=35.2
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|..-|.. ++++-+..|++|.+.|.++.+..-.++
T Consensus 133 Wldp~n~~~~a~~I~~~L~~------~DP~~a~~Y~~Na~~~~~~L~~Ld~~~ 179 (307)
T 3ujp_A 133 WMSPRNALVYVENIRQAFVE------LDPDNAKYYNANAAVYSEQLKAIDRQL 179 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHH------HCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH------hCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666777888888888876 333456688899999998888776654
No 95
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=22.98 E-value=1.6e+02 Score=18.94 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=31.3
Q ss_pred CeeeE--EEEeCCCCCCCC-CcEEEEEEEcCCCCCCCCCeeEEecccc
Q 033452 1 MFHWQ--ATIIGPNDSPYA-GGVFVVTIHFPPDYPFKPPKVAFKTKVF 45 (119)
Q Consensus 1 ~~~w~--~~i~gp~~t~y~-g~~f~~~i~fp~~yP~~pP~v~f~t~i~ 45 (119)
+.+|. +.+.|+.+.... .-+=++...+-+.|+. |...+..+-|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 45898 899999888664 4566788888888874 7766665533
No 96
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=22.61 E-value=55 Score=23.06 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=34.5
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|..-|.. ++++-+..|+.|.+.|.++.+..-.++
T Consensus 122 Wldp~~~~~~a~~I~~~L~~------~dP~~a~~y~~N~~~~~~~L~~Ld~~~ 168 (284)
T 3cx3_A 122 WLDPEKAGEEAQIIADKLSE------VDSEHKETYQKNAQAFIKKAQELTKKF 168 (284)
T ss_dssp GGSHHHHHHHHHHHHHHHHH------HSGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778888888886 334556688889999998887765544
No 97
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=22.50 E-value=1e+02 Score=16.66 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 73 VLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 73 il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
.|..|..-+.+|. ..--+..+....+.|+..-....|..+.+|.+
T Consensus 9 aLqqLl~tlksp~-speqqqqvl~ILksNPqLMAAfIKQR~~~~~~ 53 (59)
T 1kbh_B 9 ALQDLLRTLKSPS-SPQQQQQVLNILKSNPQLMAAFIKQRTAKYVA 53 (59)
T ss_dssp HHHHHHHHHHSCT-TTTCSTHHHHHHTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence 3455555556665 33367788888999999988888888887765
No 98
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=22.27 E-value=78 Score=22.49 Aligned_cols=25 Identities=32% Similarity=0.695 Sum_probs=19.9
Q ss_pred CCcEEEEEEEcCCCC------------------CCCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDY------------------PFKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~y------------------P~~pP~v~f~ 41 (119)
+.|.|.|+-.+|..| |..||.|.|.
T Consensus 150 ~~G~y~F~TI~P~~Ypip~dGp~g~ll~~~gr~~~RpaHIHf~ 192 (260)
T 3th1_A 150 SQGNYRVRTTMPVPYQIPYEGPTGRLLGHLGSHTWRPAHVHFK 192 (260)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCSEECCEEEEE
T ss_pred CCCEEEEEEECCCCCCCCCCCcHHHHHHhcCCCCCCCCeEEEE
Confidence 568999999999666 5577888776
No 99
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=22.13 E-value=50 Score=24.16 Aligned_cols=25 Identities=20% Similarity=0.499 Sum_probs=21.2
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-.+|.-|| ..||.|.|.
T Consensus 186 ~~G~y~F~TI~Pg~Yp~p~dgp~g~lL~~~grh~~RpaHIHf~ 228 (311)
T 1dmh_A 186 ENGQYRVRTILPAGYGCPPEGPTQQLLNQLGRHGNRPAHIHYF 228 (311)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECSEEEEE
T ss_pred CCceEEEEEEcCCcccCCCCCcHHHHHHhcccCCCCCceEEEE
Confidence 4699999999999997 468888776
No 100
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=22.10 E-value=56 Score=23.50 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|..-|.. ++++-+..|+.|.+.|.++.+....++
T Consensus 140 Wldp~n~~~~a~~I~~~L~~------~DP~~a~~Y~~N~~~~~~~L~~Ld~~~ 186 (313)
T 1toa_A 140 WFDVKLWSYSVKAVYESLCK------LLPGKTREFTQRYQAYQQQLDKLDAYV 186 (313)
T ss_dssp GGSHHHHHHHHHHHHHHHHH------HCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHHH------HChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555667777888887776 333456678888888888887765544
No 101
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=21.45 E-value=89 Score=19.65 Aligned_cols=35 Identities=6% Similarity=0.100 Sum_probs=21.5
Q ss_pred cccCCCceecccccccCCCcccHHHHHHHHHHhhc
Q 033452 48 NINSNGNICLDILKEQWSPALTISKVLLSICSLLT 82 (119)
Q Consensus 48 nv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ll~ 82 (119)
-||++|+|-...+.....-.-++.++|..|..+..
T Consensus 126 lID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 126 IVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp EECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred EECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 46678888654443333333467888888777643
No 102
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=21.42 E-value=61 Score=23.03 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=35.5
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 033452 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 116 (119)
Q Consensus 64 W~p~~~l~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~k~ 116 (119)
|-.-.....+...|..-|.. ++++-+..|+.|.+.|.++.+..-.++
T Consensus 126 Wldp~~~~~~a~~I~~~L~~------~dP~~a~~y~~N~~~~~~~L~~Ld~~~ 172 (294)
T 3hh8_A 126 WLNLENGIIYSKNIAKQLIA------KDPKNKETYEKNLKAYVAKLEKLDKEA 172 (294)
T ss_dssp GGSHHHHHHHHHHHHHHHHH------HCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHHH------hCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 76666777788888888886 334456788999999999888876655
No 103
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=21.38 E-value=49 Score=23.82 Aligned_cols=25 Identities=20% Similarity=0.503 Sum_probs=20.5
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEe
Q 033452 17 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 41 (119)
Q Consensus 17 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 41 (119)
+.|.|.|+-.+|-.|| ..||.|.|.
T Consensus 182 ~dG~y~F~TI~Pg~Yp~p~dGp~G~lL~~~grh~~RpaHIH~~ 224 (280)
T 3hhy_A 182 EEGRYEITTIQPAPYQIPTDGPTGQFIEAQNGHPWRPAHLHLI 224 (280)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECSCEEEE
T ss_pred CCceEEEEEECCcCcCCCCCCcHHHHHHhcCCCCCCCcEEEEE
Confidence 4689999999998887 468888775
No 104
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=21.12 E-value=55 Score=18.06 Aligned_cols=27 Identities=19% Similarity=0.026 Sum_probs=20.2
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhcC
Q 033452 92 PEIAHMCKTDKTKYESSARSWTQKYAM 118 (119)
Q Consensus 92 ~~aa~~~~~~~~~f~~~~~~~~~k~a~ 118 (119)
+||-...++=|--...+||.-+++||.
T Consensus 7 ~EAe~~LkkIP~FVR~kvrr~tE~~Ar 33 (62)
T 2l09_A 7 SEAKTKLKNIPFFARSQAKARIEQLAR 33 (62)
T ss_dssp HHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 566666677676778888888888883
No 105
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=21.05 E-value=67 Score=19.85 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=21.6
Q ss_pred cccCCCceecccccccCCCcccHHHHHHHHHHhh
Q 033452 48 NINSNGNICLDILKEQWSPALTISKVLLSICSLL 81 (119)
Q Consensus 48 nv~~~g~ic~~~l~~~W~p~~~l~~il~~i~~ll 81 (119)
.|+++|+|-...........-++..++..|..++
T Consensus 133 lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 133 VLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp EECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred EEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 3457888876555444444446677777777765
No 106
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=20.40 E-value=1.1e+02 Score=22.76 Aligned_cols=38 Identities=5% Similarity=0.162 Sum_probs=28.6
Q ss_pred HHHHHHhhc-CCCC-------CCCccHHHHHHHHhCHHHHHHHHHH
Q 033452 74 LLSICSLLT-DPNP-------DDPLVPEIAHMCKTDKTKYESSARS 111 (119)
Q Consensus 74 l~~i~~ll~-~p~~-------~~~~n~~aa~~~~~~~~~f~~~~~~ 111 (119)
+..|+.++. +|+. -.-.|++.+++.++|+++|.+...+
T Consensus 246 f~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e 291 (368)
T 1oqy_A 246 FQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 291 (368)
T ss_dssp HHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcC
Confidence 356666666 4542 2457999999999999999998764
Done!