Query 033453
Match_columns 119
No_of_seqs 168 out of 1027
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1div_A Ribosomal protein L9; r 100.0 3.7E-42 1.3E-46 250.1 13.4 116 2-118 22-147 (149)
2 1nkw_F 50S ribosomal protein L 100.0 2.5E-41 8.5E-46 245.1 13.7 114 2-118 21-144 (146)
3 3r8s_H 50S ribosomal protein L 100.0 1.9E-41 6.6E-46 246.4 11.6 116 2-118 22-148 (149)
4 3v2d_I 50S ribosomal protein L 100.0 3.8E-41 1.3E-45 244.6 10.4 115 2-118 22-146 (148)
5 3bbo_J Ribosomal protein L9; l 100.0 7.5E-41 2.6E-45 252.6 -1.2 118 2-119 71-197 (197)
6 2hba_A BL17, 50S ribosomal pro 98.2 1.9E-07 6.6E-12 56.4 0.5 15 2-16 22-36 (52)
7 3ghd_A A cystathionine beta-sy 83.4 0.47 1.6E-05 28.8 1.5 27 57-84 30-56 (70)
8 3gby_A Uncharacterized protein 68.1 3.3 0.00011 26.5 2.4 22 56-77 106-127 (128)
9 3k6e_A CBS domain protein; str 66.9 4.4 0.00015 27.4 3.0 29 55-84 121-149 (156)
10 3hf7_A Uncharacterized CBS-dom 65.0 6.6 0.00023 25.3 3.5 22 55-76 106-127 (130)
11 3jtf_A Magnesium and cobalt ef 63.3 8.4 0.00029 24.6 3.8 22 55-76 105-126 (129)
12 3kxr_A Magnesium transporter, 63.3 8.4 0.00029 27.4 4.0 27 53-79 151-177 (205)
13 3lqn_A CBS domain protein; csg 63.2 5 0.00017 26.2 2.6 22 56-77 123-144 (150)
14 3fio_A A cystathionine beta-sy 63.1 3.2 0.00011 23.6 1.5 19 59-77 32-50 (70)
15 2ef7_A Hypothetical protein ST 62.9 7.5 0.00026 24.6 3.4 22 56-77 105-126 (133)
16 2p9m_A Hypothetical protein MJ 62.6 11 0.00038 23.9 4.3 22 55-76 115-136 (138)
17 3kpb_A Uncharacterized protein 62.3 3.5 0.00012 25.8 1.7 21 56-76 100-120 (122)
18 3i8n_A Uncharacterized protein 60.6 8.2 0.00028 24.6 3.3 21 55-75 108-128 (130)
19 2nyc_A Nuclear protein SNF4; b 58.4 9.9 0.00034 24.2 3.4 22 56-77 121-142 (144)
20 2emq_A Hypothetical conserved 58.1 6.5 0.00022 25.7 2.5 22 56-77 119-140 (157)
21 3nqr_A Magnesium and cobalt ef 57.5 8.1 0.00028 24.5 2.9 21 55-75 105-125 (127)
22 2yzi_A Hypothetical protein PH 57.2 5.3 0.00018 25.6 1.9 21 57-77 110-130 (138)
23 4gqw_A CBS domain-containing p 56.9 13 0.00043 23.8 3.8 23 55-77 122-144 (152)
24 3l6i_A Uncharacterized lipopro 55.6 39 0.0013 24.2 6.5 50 64-116 13-70 (181)
25 3lv9_A Putative transporter; C 55.2 10 0.00034 24.7 3.1 22 55-76 124-145 (148)
26 1o50_A CBS domain-containing p 53.9 8.2 0.00028 25.5 2.5 22 56-77 133-154 (157)
27 3oco_A Hemolysin-like protein 53.3 8.1 0.00028 25.5 2.4 23 55-77 122-144 (153)
28 2uv4_A 5'-AMP-activated protei 53.2 8 0.00027 25.4 2.3 20 56-75 131-150 (152)
29 1yav_A Hypothetical protein BS 53.2 9.2 0.00031 25.2 2.6 37 38-77 107-143 (159)
30 3ctu_A CBS domain protein; str 53.0 7.1 0.00024 25.6 2.0 22 56-77 122-143 (156)
31 2wt7_B Transcription factor MA 52.4 21 0.00072 23.1 4.2 44 2-45 35-87 (90)
32 3sl7_A CBS domain-containing p 52.2 17 0.00057 24.1 3.8 23 55-77 135-157 (180)
33 2p5k_A Arginine repressor; DNA 51.4 7.6 0.00026 22.0 1.7 40 63-106 18-57 (64)
34 3lfr_A Putative metal ION tran 51.3 6.3 0.00021 25.5 1.5 23 55-77 106-128 (136)
35 2ahq_A Sigma-54, RNA polymeras 49.7 5 0.00017 25.2 0.8 23 65-88 38-60 (76)
36 3ocm_A Putative membrane prote 49.1 15 0.00051 25.1 3.3 23 55-77 136-158 (173)
37 3fhm_A Uncharacterized protein 48.0 12 0.0004 24.9 2.5 22 56-77 65-86 (165)
38 3lhh_A CBS domain protein; str 47.7 15 0.00051 24.8 3.1 23 55-77 143-165 (172)
39 2pfi_A Chloride channel protei 46.3 15 0.00052 23.9 2.8 22 58-79 129-150 (164)
40 1q1v_A DEK protein; winged-hel 45.2 11 0.00036 23.2 1.8 28 62-89 30-58 (70)
41 2amw_A Hypothetical protein NE 45.2 10 0.00034 22.9 1.7 34 63-96 38-71 (83)
42 3k2v_A Putative D-arabinose 5- 43.2 14 0.00048 24.0 2.3 21 56-76 68-88 (149)
43 1m2d_A [2Fe-2S] ferredoxin; th 42.6 16 0.00054 23.6 2.4 28 57-84 69-98 (110)
44 2lki_A Putative uncharacterize 41.9 10 0.00035 24.6 1.4 34 63-96 60-93 (105)
45 1pbj_A Hypothetical protein; s 41.0 14 0.00048 22.9 1.9 18 59-76 105-122 (125)
46 2oux_A Magnesium transporter; 41.0 17 0.00058 27.1 2.6 23 55-77 238-260 (286)
47 1grj_A GREA protein; transcrip 40.7 42 0.0014 23.3 4.6 21 7-27 3-23 (158)
48 3k6e_A CBS domain protein; str 40.3 22 0.00074 23.9 2.9 22 56-77 55-76 (156)
49 3eyr_A Uncharacterized lipopro 40.2 99 0.0034 22.0 7.0 41 64-107 18-60 (178)
50 2rc3_A CBS domain; in SITU pro 40.2 14 0.00048 23.4 1.8 20 58-77 113-132 (135)
51 1dv5_A APO-DCP, APO-D-alanyl c 40.0 12 0.0004 22.6 1.4 35 62-96 36-70 (80)
52 4fry_A Putative signal-transdu 39.8 20 0.00067 23.4 2.6 20 58-77 117-136 (157)
53 2p4v_A Transcription elongatio 38.6 53 0.0018 22.8 4.8 19 7-25 3-21 (158)
54 1b4a_A Arginine repressor; hel 38.5 11 0.00037 26.4 1.1 37 63-101 18-54 (149)
55 3ddj_A CBS domain-containing p 38.2 19 0.00067 26.0 2.6 23 55-77 264-286 (296)
56 2o16_A Acetoin utilization pro 38.0 17 0.00059 24.0 2.1 19 59-77 118-136 (160)
57 2rih_A Conserved protein with 38.0 11 0.00038 24.2 1.1 21 56-76 108-128 (141)
58 3fv6_A YQZB protein; CBS domai 37.9 14 0.00049 24.3 1.7 18 60-77 128-145 (159)
59 2j9l_A Chloride channel protei 36.9 20 0.00068 23.9 2.3 21 58-78 147-167 (185)
60 2yvy_A MGTE, Mg2+ transporter 36.0 20 0.0007 26.3 2.4 23 55-77 236-258 (278)
61 1qzm_A ATP-dependent protease 36.0 10 0.00035 24.6 0.6 12 6-17 12-23 (94)
62 1vr9_A CBS domain protein/ACT 35.9 41 0.0014 23.5 4.0 22 56-77 110-131 (213)
63 3he5_B Synzip2; heterodimeric 35.6 61 0.0021 18.3 4.9 28 4-31 1-28 (52)
64 2auv_A Potential NAD-reducing 35.6 12 0.0004 23.0 0.8 19 58-76 66-84 (85)
65 3a1y_A 50S ribosomal protein P 33.8 17 0.00059 21.4 1.3 25 64-89 16-40 (58)
66 3t4n_C Nuclear protein SNF4; C 32.8 46 0.0016 24.3 3.9 22 55-76 299-320 (323)
67 4esy_A CBS domain containing m 31.7 7.3 0.00025 26.2 -0.7 20 57-76 143-162 (170)
68 2v8q_E 5'-AMP-activated protei 31.6 27 0.00092 25.8 2.4 24 56-79 303-326 (330)
69 3l2b_A Probable manganase-depe 31.5 26 0.0009 24.8 2.3 22 56-77 45-66 (245)
70 1jsu_C P27, KIP1, CIP2; comple 31.3 24 0.00082 22.5 1.8 20 58-77 7-26 (84)
71 2lbf_B 60S acidic ribosomal pr 30.8 23 0.0008 21.7 1.6 25 64-89 18-42 (70)
72 2d4z_A Chloride channel protei 30.5 22 0.00074 26.4 1.7 20 57-76 227-246 (250)
73 2d28_C XPSE, type II secretion 30.1 27 0.00094 23.0 2.1 19 63-81 47-65 (149)
74 1whz_A Hypothetical protein; a 29.8 58 0.002 19.1 3.4 22 63-85 3-24 (70)
75 1x0h_A P195, RAS GTPase-activa 29.1 23 0.00079 23.6 1.5 47 56-106 1-58 (112)
76 2qrd_G Protein C1556.08C; AMPK 27.6 60 0.002 23.8 3.8 23 55-77 294-316 (334)
77 1y5h_A Hypothetical protein RV 27.5 15 0.0005 23.2 0.3 17 59-75 114-130 (133)
78 2lbf_A 60S acidic ribosomal pr 27.4 27 0.00093 21.3 1.5 25 64-89 22-46 (69)
79 2zy9_A Mg2+ transporter MGTE; 26.3 54 0.0018 26.4 3.5 23 55-77 256-278 (473)
80 1im3_D Cytomegalovirus protein 25.2 21 0.00073 22.8 0.7 10 57-66 13-24 (95)
81 2fu4_A Ferric uptake regulatio 24.9 36 0.0012 20.1 1.7 24 63-87 32-55 (83)
82 3oi8_A Uncharacterized protein 24.8 57 0.002 21.3 2.9 18 54-71 138-155 (156)
83 2lv7_A Calcium-binding protein 24.6 47 0.0016 20.7 2.3 24 63-87 51-74 (100)
84 1ykh_B RNA polymerase II holoe 24.5 1.5E+02 0.0052 19.9 5.1 32 14-45 93-124 (132)
85 1tif_A IF3-N, translation init 24.1 66 0.0022 20.1 2.9 30 52-82 16-45 (78)
86 3usb_A Inosine-5'-monophosphat 23.1 62 0.0021 26.5 3.3 22 55-76 213-234 (511)
87 1neu_A Myelin P0 protein; stru 23.0 1.1E+02 0.0038 18.3 3.9 31 87-117 83-118 (124)
88 1yke_B RNA polymerase II holoe 22.9 1.6E+02 0.0055 20.4 5.1 33 14-46 93-125 (151)
89 1b4r_A Protein (PKD1_human); P 22.8 1.3E+02 0.0044 18.5 4.1 26 92-117 51-79 (80)
90 1h05_A 3-dehydroquinate dehydr 22.7 53 0.0018 23.1 2.5 26 61-86 23-51 (146)
91 2uyg_A 3-dehydroquinate dehydr 22.2 56 0.0019 23.0 2.5 26 61-86 20-48 (149)
92 1g6u_A Domain swapped dimer; d 21.5 1.2E+02 0.004 16.9 4.2 28 11-38 18-45 (48)
93 1gtz_A 3-dehydroquinate dehydr 21.0 52 0.0018 23.4 2.1 26 61-86 27-55 (156)
94 1uqr_A 3-dehydroquinate dehydr 20.5 52 0.0018 23.3 2.1 27 60-86 21-50 (154)
No 1
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=100.00 E-value=3.7e-42 Score=250.15 Aligned_cols=116 Identities=26% Similarity=0.444 Sum_probs=111.4
Q ss_pred CccchhcccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCeEEEEEecCCCCceeecccHHHHHH
Q 033453 2 NQVFGNLQLFGV---------LCMEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVD 72 (119)
Q Consensus 2 ~~gyarNfL~~~---------~l~~l~~~~~~~~~~~~~~~~~a~~la~kL~~~~~l~i~~k~g~~gkLFGSVt~~dIa~ 72 (119)
.||||||||||+ |+++++.++++.++++++.+++|++++++|+++ +++|.+++|++|+||||||++||++
T Consensus 22 k~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~-~v~i~~k~g~~gklfGSVt~~dIa~ 100 (149)
T 1div_A 22 ADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAEELANAKKLKEQLEKL-TVTIPAKAGEGGRLFGSITSKQIAE 100 (149)
T ss_dssp CTTHHHHTTTTTTSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEECBCGGGEEEEEECHHHHHH
T ss_pred cCCceeeeeccCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEEEeCCCCcEEeecCHHHHHH
Confidence 589999999998 678999999999999999999999999999997 7999999999999999999999999
Q ss_pred HHHHhcCCceecccccccC-ccceeeEEEEEEeCCCeEEEEEEEEee
Q 033453 73 IIKAQLQRDVDKKIVDLPE-IRETGEYIAQLKLHPEVTARIRLNVFA 118 (119)
Q Consensus 73 ~L~~~~g~~Idkk~I~l~~-IK~lG~y~V~I~L~~~V~a~i~V~V~~ 118 (119)
+|.+++|++|||++|.|++ ||++|+|+|+|+||++|+|+|+|+|++
T Consensus 101 al~~~~g~~idk~~I~l~~~Ik~~G~~~v~vkLh~~V~a~i~v~V~~ 147 (149)
T 1div_A 101 SLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPEVTATLKVHVTE 147 (149)
T ss_dssp HHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHHhhCCeechheEECCCCccccEEEEEEEEECCCCEEEEEEEEEe
Confidence 9999889999999999987 999999999999999999999999986
No 2
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=100.00 E-value=2.5e-41 Score=245.10 Aligned_cols=114 Identities=30% Similarity=0.458 Sum_probs=109.0
Q ss_pred CccchhcccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCeEEEEEecCCCCceeecccHHHHHH
Q 033453 2 NQVFGNLQLFGV---------LCMEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVD 72 (119)
Q Consensus 2 ~~gyarNfL~~~---------~l~~l~~~~~~~~~~~~~~~~~a~~la~kL~~~~~l~i~~k~g~~gkLFGSVt~~dIa~ 72 (119)
.||||||||||+ |+++++.++++.++++++.+++|++++++|+++ +++|.+++| +|+||||||++||++
T Consensus 21 k~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~-~v~i~~k~g-~gklfGSVt~~dIa~ 98 (146)
T 1nkw_F 21 KDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGV-AVELSVRAG-EGKIYGAVTHQDVAN 98 (146)
T ss_pred cCcceehhcccCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEEEcC-CCceeeccCHHHHHH
Confidence 489999999999 567899999999999999999999999999997 799999999 999999999999999
Q ss_pred HHHHhcCCceecccccccC-ccceeeEEEEEEeCCCeEEEEEEEEee
Q 033453 73 IIKAQLQRDVDKKIVDLPE-IRETGEYIAQLKLHPEVTARIRLNVFA 118 (119)
Q Consensus 73 ~L~~~~g~~Idkk~I~l~~-IK~lG~y~V~I~L~~~V~a~i~V~V~~ 118 (119)
+|.++ |++|||++|.|++ ||++|+|+|+|+||++|+|+|+|+|++
T Consensus 99 al~~~-g~~idk~~I~l~~~Ik~~G~~~v~vkLh~~V~a~i~v~V~~ 144 (146)
T 1nkw_F 99 SLDQL-GFDVDRRKIDMPKTVKEVGEYDIAYRAHPEVTIPMKLVVHA 144 (146)
T ss_pred HHHHc-CCeechheEECCCcccccEEEEEEEEECCCCEEEEEEEEEe
Confidence 99999 9999999999987 999999999999999999999999986
No 3
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=100.00 E-value=1.9e-41 Score=246.36 Aligned_cols=116 Identities=26% Similarity=0.360 Sum_probs=109.7
Q ss_pred CccchhcccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCeEEEEEecCCCCceeecccHHHHHH
Q 033453 2 NQVFGNLQLFGV---------LCMEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVD 72 (119)
Q Consensus 2 ~~gyarNfL~~~---------~l~~l~~~~~~~~~~~~~~~~~a~~la~kL~~~~~l~i~~k~g~~gkLFGSVt~~dIa~ 72 (119)
.||||||||||+ |+++++.++++.++++++.+++|++++++|+++.+++|.+++|++|+||||||++||++
T Consensus 22 k~GYaRNfLiP~glA~~AT~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~~~~~v~i~~k~g~~gklfGSVt~~dIa~ 101 (149)
T 3r8s_H 22 KAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIAD 101 (149)
T ss_dssp CHHHHTTTTSSSSSEECCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECBCTTSEEEEEECHHHHHH
T ss_pred cCcceehhhccCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCCCceEcccCHHHHHH
Confidence 489999999998 77899999999999999999999999999999526999999999999999999999999
Q ss_pred HHHHhcCCceecccccccC--ccceeeEEEEEEeCCCeEEEEEEEEee
Q 033453 73 IIKAQLQRDVDKKIVDLPE--IRETGEYIAQLKLHPEVTARIRLNVFA 118 (119)
Q Consensus 73 ~L~~~~g~~Idkk~I~l~~--IK~lG~y~V~I~L~~~V~a~i~V~V~~ 118 (119)
+|+++ |++|||++|.||+ ||++|+|+|+|+||++|+|+|+|+|++
T Consensus 102 al~~~-g~~idk~~I~l~~~pIk~~G~~~v~v~Lh~~V~a~i~v~V~~ 148 (149)
T 3r8s_H 102 AVTAA-GVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVA 148 (149)
T ss_dssp HHHTT-SCCCCTTSEECSSCCEEESEEEEEEECSSSSCCCCEEEEEEE
T ss_pred HHHHc-CCceehheEEcCCccccceEEEEEEEEECCCCEEEEEEEEEE
Confidence 99988 9999999999973 999999999999999999999999986
No 4
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=100.00 E-value=3.8e-41 Score=244.59 Aligned_cols=115 Identities=27% Similarity=0.426 Sum_probs=110.0
Q ss_pred CccchhcccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCeEEEEEecCCCCceeecccHHHHHH
Q 033453 2 NQVFGNLQLFGV---------LCMEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVD 72 (119)
Q Consensus 2 ~~gyarNfL~~~---------~l~~l~~~~~~~~~~~~~~~~~a~~la~kL~~~~~l~i~~k~g~~gkLFGSVt~~dIa~ 72 (119)
.||||||||||+ |+++++.++++.++++++.+++|++++++|++. +++|.+++|++ +||||||++||++
T Consensus 22 k~GYaRNfLiP~g~A~~AT~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~~~-~v~i~~kag~~-kLfGSVt~~dIa~ 99 (148)
T 3v2d_I 22 KPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAERKAEAERLKEILENL-TLTIPVRAGET-KIYGSVTAKDIAE 99 (148)
T ss_dssp CHHHHHHTTGGGTSEEECCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHSSSC-CEEEECCBSSS-SBSSCBCHHHHHH
T ss_pred cCCceehhhcccCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEEEcCCC-ccccccCHHHHHH
Confidence 489999999998 678999999999999999999999999999997 79999999999 9999999999999
Q ss_pred HHHHhcCCceecccccccC-ccceeeEEEEEEeCCCeEEEEEEEEee
Q 033453 73 IIKAQLQRDVDKKIVDLPE-IRETGEYIAQLKLHPEVTARIRLNVFA 118 (119)
Q Consensus 73 ~L~~~~g~~Idkk~I~l~~-IK~lG~y~V~I~L~~~V~a~i~V~V~~ 118 (119)
+|.+++|++|||++|.||+ ||++|+|+|+|+||++|+|+|+|+|++
T Consensus 100 al~~~~g~~idk~~I~l~~pIk~~G~~~v~v~Lh~~V~a~i~v~V~~ 146 (148)
T 3v2d_I 100 ALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEVPIQLKVSVVA 146 (148)
T ss_dssp HHTTTTCCCCCTTSSCCSSCBCSCEEEEEECCSBTTBCCEEEEEEEC
T ss_pred HHHHhcCCCcchheEEcCchhhceEEEEEEEEECCCcEEEEEEEEEe
Confidence 9999889999999999987 999999999999999999999999985
No 5
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=7.5e-41 Score=252.62 Aligned_cols=118 Identities=74% Similarity=1.067 Sum_probs=110.7
Q ss_pred CccchhcccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCeEEEEEecCCCCceeecccHHHHHH
Q 033453 2 NQVFGNLQLFGV---------LCMEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVD 72 (119)
Q Consensus 2 ~~gyarNfL~~~---------~l~~l~~~~~~~~~~~~~~~~~a~~la~kL~~~~~l~i~~k~g~~gkLFGSVt~~dIa~ 72 (119)
.||||||||||+ |+++++.++++.++++++.+++|++++++|+++..++|.+++|++|+||||||++||++
T Consensus 71 k~GYARNfLiP~glAv~AT~~nlk~~e~~~~~~e~~~~~~~~~A~~la~~L~~~~~v~i~~kaGe~GkLFGSVT~~dIa~ 150 (197)
T 3bbo_J 71 KAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVD 150 (197)
T ss_dssp CSSSCCCCCTTTTCCCCCCHHHHHHHHTTTHHHHGGGTTTTHHHHTHHHHSSSCCCCBCCCCBCTTSSBSSCCSSHHHHG
T ss_pred cCcceeehcccCCceecCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEeCCCCcEecccCHHHHHH
Confidence 589999999998 66889999999999888999999999999999624999999999999999999999999
Q ss_pred HHHHhcCCceecccccccCccceeeEEEEEEeCCCeEEEEEEEEeeC
Q 033453 73 IIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN 119 (119)
Q Consensus 73 ~L~~~~g~~Idkk~I~l~~IK~lG~y~V~I~L~~~V~a~i~V~V~~~ 119 (119)
+|.+++|++|||++|.|++||++|+|+|+|+||++|+++|+|+|+++
T Consensus 151 al~~~~Gi~Idk~~I~L~~IK~lG~y~V~VkLh~eV~a~i~V~V~~~ 197 (197)
T 3bbo_J 151 IIKSQLQKDIDKRLVSLPEIRETGEYIAELKLHPDVTARVKINVFAN 197 (197)
T ss_dssp GGTSSSSCCCCSTTCCSCCCSSSSCEEECCCCBTTBCCCEEEBCCCC
T ss_pred HHHHhhCCeeeeeEEEeccccceEEEEEEEEECCCcEEEEEEEEEeC
Confidence 99988899999999999889999999999999999999999999874
No 6
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=98.23 E-value=1.9e-07 Score=56.43 Aligned_cols=15 Identities=20% Similarity=0.067 Sum_probs=12.9
Q ss_pred CccchhcccchHHHH
Q 033453 2 NQVFGNLQLFGVLCM 16 (119)
Q Consensus 2 ~~gyarNfL~~~~l~ 16 (119)
.+|||||||+|++++
T Consensus 22 ~~GYaRN~LiP~g~A 36 (52)
T 2hba_A 22 ADGYANNFLFKQGLA 36 (52)
T ss_dssp CHHHHHHTTTTTTSE
T ss_pred cCCceehhhccCCce
Confidence 589999999999664
No 7
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=83.38 E-value=0.47 Score=28.79 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=21.0
Q ss_pred CCCceeecccHHHHHHHHHHhcCCceec
Q 033453 57 KGKQIFGSVTAQDVVDIIKAQLQRDVDK 84 (119)
Q Consensus 57 ~~gkLFGSVt~~dIa~~L~~~~g~~Idk 84 (119)
++|+|.|.||-.||...+... |.+...
T Consensus 30 d~~~lvGIvT~~Di~~~~~~~-~~~~~~ 56 (70)
T 3ghd_A 30 EGDEILGVVTERDILDKVVAK-GKNPKE 56 (70)
T ss_dssp ETTEEEEEEEHHHHHHHTTTT-TCCGGG
T ss_pred ECCEEEEEEEHHHHHHHHHhc-CCCccc
Confidence 468999999999999887665 655443
No 8
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=68.11 E-value=3.3 Score=26.46 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=19.3
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++-|.||..||.+++.+.
T Consensus 106 d~~g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 106 DEDGRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp CTTCBEEEEEEHHHHHHHHHTT
T ss_pred CCCCCEEEEEEHHHHHHHHHhh
Confidence 4789999999999999998753
No 9
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=66.93 E-value=4.4 Score=27.45 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=22.0
Q ss_pred cCCCCceeecccHHHHHHHHHHhcCCceec
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQLQRDVDK 84 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~~g~~Idk 84 (119)
+.++|++-|-||..||.+++.... .++++
T Consensus 121 Vd~~g~l~GiiT~~Dil~~~~~~~-~~~~~ 149 (156)
T 3k6e_A 121 VDAEGIFQGIITRKSILKAVNALL-HDFSK 149 (156)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHHHS-CC---
T ss_pred EecCCEEEEEEEHHHHHHHHHHHh-cccch
Confidence 578999999999999999998763 34443
No 10
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=65.01 E-value=6.6 Score=25.26 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.1
Q ss_pred cCCCCceeecccHHHHHHHHHH
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~ 76 (119)
+.++|++-|-||..||.++|..
T Consensus 106 vd~~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 106 VDEYGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp ECTTSCEEEEEEHHHHHHHHHC
T ss_pred EcCCCCEEEEeeHHHHHHHHhC
Confidence 4678999999999999999863
No 11
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=63.35 E-value=8.4 Score=24.58 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=18.2
Q ss_pred cCCCCceeecccHHHHHHHHHH
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~ 76 (119)
+.++|++-|.||..||.++|..
T Consensus 105 vd~~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 105 IDEHGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp ECC-CCEEEEEEHHHHHHHHHH
T ss_pred EeCCCCEEEEEEHHHHHHHHhC
Confidence 4567899999999999999864
No 12
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=63.27 E-value=8.4 Score=27.37 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=22.1
Q ss_pred EecCCCCceeecccHHHHHHHHHHhcC
Q 033453 53 RKGGKGKQIFGSVTAQDVVDIIKAQLQ 79 (119)
Q Consensus 53 ~k~g~~gkLFGSVt~~dIa~~L~~~~g 79 (119)
.=+.++|+|-|.||..||.+.+.+...
T Consensus 151 pVVD~~g~lvGiIT~~Dil~~i~~e~~ 177 (205)
T 3kxr_A 151 PVIDDAGELIGRVTLRAATALVREHYE 177 (205)
T ss_dssp EEECTTSBEEEEEEHHHHHHHHHHHHC
T ss_pred EEEcCCCeEEEEEEHHHHHHHHHHHHH
Confidence 334678999999999999999987644
No 13
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=63.24 E-value=5 Score=26.16 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=19.8
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++-|.||..||..++...
T Consensus 123 d~~g~~~Giit~~dil~~l~~~ 144 (150)
T 3lqn_A 123 NEDGYFEGILTRRAILKLLNKK 144 (150)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHH
T ss_pred CCCCcEEEEEEHHHHHHHHHHH
Confidence 5689999999999999999875
No 14
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=63.07 E-value=3.2 Score=23.63 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=17.0
Q ss_pred CceeecccHHHHHHHHHHh
Q 033453 59 KQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 59 gkLFGSVt~~dIa~~L~~~ 77 (119)
|++-|.||.+||..++...
T Consensus 32 ~~l~Givt~~dl~~~~~~~ 50 (70)
T 3fio_A 32 DEILGVVTERDILDKVVAK 50 (70)
T ss_dssp TEEEEEEEHHHHHHHTTTT
T ss_pred CEEEEEEEHHHHHHHHHHc
Confidence 8999999999999998654
No 15
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=62.89 E-value=7.5 Score=24.62 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=19.4
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++.|.||..||..++.+.
T Consensus 105 d~~g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 105 DDKGNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHH
T ss_pred CCCCeEEEEEEHHHHHHHHHHH
Confidence 4678999999999999999765
No 16
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=62.59 E-value=11 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=18.8
Q ss_pred cCCCCceeecccHHHHHHHHHH
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~ 76 (119)
+.++|++.|.||..||..++.+
T Consensus 115 vd~~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 115 VDKNNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHH
T ss_pred ECCCCeEEEEEEHHHHHHHHHh
Confidence 3468999999999999998865
No 17
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=62.31 E-value=3.5 Score=25.78 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=17.7
Q ss_pred CCCCceeecccHHHHHHHHHH
Q 033453 56 GKGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~ 76 (119)
.++|++-|.||..||.+++..
T Consensus 100 d~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 100 DDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp CTTCBEEEEEEHHHHHHHHC-
T ss_pred CCCCCEEEEEeHHHHHHHhhc
Confidence 466899999999999998854
No 18
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=60.65 E-value=8.2 Score=24.60 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.3
Q ss_pred cCCCCceeecccHHHHHHHHH
Q 033453 55 GGKGKQIFGSVTAQDVVDIIK 75 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~ 75 (119)
+.++|++-|.||..||.++|.
T Consensus 108 vd~~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 108 VDEYGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp ECTTSCEEEEEEHHHHHHHHH
T ss_pred EcCCCCEEEEEEHHHHHHHHc
Confidence 457899999999999999874
No 19
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=58.39 E-value=9.9 Score=24.20 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.9
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++-|.||..||..++...
T Consensus 121 d~~g~~~Giit~~dil~~l~~~ 142 (144)
T 2nyc_A 121 DDVGRLVGVLTLSDILKYILLG 142 (144)
T ss_dssp CTTSBEEEEEEHHHHHHHHHHC
T ss_pred CCCCCEEEEEEHHHHHHHHHhc
Confidence 4678999999999999998653
No 20
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=58.11 E-value=6.5 Score=25.71 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.6
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++.|.||..||..++...
T Consensus 119 d~~g~~~Giit~~dil~~~~~~ 140 (157)
T 2emq_A 119 NDDGYFAGIFTRREVLKQLNKQ 140 (157)
T ss_dssp CSSSSEEEEEEHHHHHHHHHHT
T ss_pred cCCCeEEEEEEHHHHHHHHHHH
Confidence 4578999999999999999875
No 21
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=57.54 E-value=8.1 Score=24.51 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.6
Q ss_pred cCCCCceeecccHHHHHHHHH
Q 033453 55 GGKGKQIFGSVTAQDVVDIIK 75 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~ 75 (119)
+.++|++-|.||..||.++|.
T Consensus 105 vd~~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 105 IDEFGGVSGLVTIEDILELIV 125 (127)
T ss_dssp ECTTSCEEEEEEHHHHHHHC-
T ss_pred EeCCCCEEEEEEHHHHHHHHh
Confidence 457899999999999998864
No 22
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=57.23 E-value=5.3 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.7
Q ss_pred CCCceeecccHHHHHHHHHHh
Q 033453 57 KGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 57 ~~gkLFGSVt~~dIa~~L~~~ 77 (119)
++|++-|.||..||..++...
T Consensus 110 ~~g~~~Giit~~dil~~~~~~ 130 (138)
T 2yzi_A 110 EEGKIVGIFTLSDLLEASRRR 130 (138)
T ss_dssp ETTEEEEEEEHHHHHHHHHCC
T ss_pred CCCCEEEEEEHHHHHHHHHHH
Confidence 578999999999999999765
No 23
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=56.86 E-value=13 Score=23.82 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=19.2
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|.||..||..++...
T Consensus 122 vd~~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 122 VDSDGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHC-
T ss_pred ECCCCcEEEEEEHHHHHHHHHhc
Confidence 34689999999999999998754
No 24
>3l6i_A Uncharacterized lipoprotein YCEB; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.01A {Escherichia coli}
Probab=55.59 E-value=39 Score=24.19 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHHhcCCceecccccccCc--cceeeEEEEEEeCC------CeEEEEEEEE
Q 033453 64 SVTAQDVVDIIKAQLQRDVDKKIVDLPEI--RETGEYIAQLKLHP------EVTARIRLNV 116 (119)
Q Consensus 64 SVt~~dIa~~L~~~~g~~Idkk~I~l~~I--K~lG~y~V~I~L~~------~V~a~i~V~V 116 (119)
|||-++|-++|.++ +.++|+ +.++.+ =.+-..+..+++.+ .+++..++.|
T Consensus 13 sISE~ei~~yL~k~--~~~~k~-~gl~gl~~~~v~l~~l~v~iG~~~~~rv~l~~~~~~~v 70 (181)
T 3l6i_A 13 TITEQEINQSLAKH--NNFSKD-IGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDM 70 (181)
T ss_dssp EEEHHHHHHHHHHH--CCCEEE-EEETTTEEEEEEEEEEEEEESSSSTTCEEEEEEEEEEE
T ss_pred eECHHHHHHHHHHh--cChhhe-eCCCceEEEEEEeCCceeecCCCCCCEEEEEEEEEEEE
Confidence 79999999999998 567664 555542 25555667777754 3455555544
No 25
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=55.20 E-value=10 Score=24.68 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.9
Q ss_pred cCCCCceeecccHHHHHHHHHH
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~ 76 (119)
+.++|++-|.||..||.++|..
T Consensus 124 vd~~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 124 VDEYGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp ECTTSSEEEEEEHHHHHHHHHH
T ss_pred EeCCCCEEEEEEHHHHHHHHhC
Confidence 3567899999999999999864
No 26
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=53.93 E-value=8.2 Score=25.46 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=19.0
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++-|.||..||..++.+.
T Consensus 133 d~~g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 133 DEKGEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHS
T ss_pred cCCCEEEEEEEHHHHHHHHHHh
Confidence 4578999999999999998753
No 27
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=53.33 E-value=8.1 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=19.1
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|.||..||.+++...
T Consensus 122 vd~~g~~vGivt~~dil~~l~~~ 144 (153)
T 3oco_A 122 IDEYGGTSGIITDKDVYEELFGN 144 (153)
T ss_dssp ECTTSCEEEEECHHHHHHHHHC-
T ss_pred EeCCCCEEEEeeHHHHHHHHhcc
Confidence 35679999999999999998753
No 28
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=53.25 E-value=8 Score=25.39 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.3
Q ss_pred CCCCceeecccHHHHHHHHH
Q 033453 56 GKGKQIFGSVTAQDVVDIIK 75 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~ 75 (119)
.++|++-|.||..||..++.
T Consensus 131 d~~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 131 DENDVVKGIVSLSDILQALV 150 (152)
T ss_dssp CTTSBEEEEEEHHHHHHHHC
T ss_pred CCCCeEEEEEEHHHHHHHHH
Confidence 45789999999999998874
No 29
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=53.24 E-value=9.2 Score=25.20 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=25.2
Q ss_pred HHHHhhhccCeEEEEEecCCCCceeecccHHHHHHHHHHh
Q 033453 38 QLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 38 ~la~kL~~~~~l~i~~k~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+....+... .+ +.. +.++|++-|.||..||..++...
T Consensus 107 ~a~~~m~~~-~~-lpV-vd~~g~~vGiit~~dil~~~~~~ 143 (159)
T 1yav_A 107 KGFGMVINN-GF-VCV-ENDEQVFEGIFTRRVVLKELNKH 143 (159)
T ss_dssp HHHHHTTTC-SE-EEE-ECTTCBEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHhC-CE-EEE-EeCCCeEEEEEEHHHHHHHHHHH
Confidence 344444443 34 332 34578999999999999999765
No 30
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=53.00 E-value=7.1 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=19.9
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++-|.||..||..++...
T Consensus 122 d~~g~~~Giit~~dil~~l~~~ 143 (156)
T 3ctu_A 122 DAEGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp CTTSBEEEEEETTHHHHHHHHH
T ss_pred cCCCeEEEEEEHHHHHHHHHHH
Confidence 4689999999999999999876
No 31
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=52.37 E-value=21 Score=23.13 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=22.7
Q ss_pred CccchhcccchHHH--HHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhc
Q 033453 2 NQVFGNLQLFGVLC--MEMKMEEERI-------EAEKKRVKEEAQQLALIFET 45 (119)
Q Consensus 2 ~~gyarNfL~~~~l--~~l~~~~~~~-------~~~~~~~~~~a~~la~kL~~ 45 (119)
|.|||.|-=..+-- ..|+.+.... ..+......+...++.+++.
T Consensus 35 NRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 35 NRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899887766632 2344333333 22333334455555555554
No 32
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=52.21 E-value=17 Score=24.11 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=19.6
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|.||..||..++...
T Consensus 135 vd~~g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 135 VDADGKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp ECTTCBEEEEEEHHHHHHHHHHH
T ss_pred ECCCCeEEEEEEHHHHHHHHHHH
Confidence 35689999999999999998753
No 33
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=51.39 E-value=7.6 Score=22.00 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=28.3
Q ss_pred ecccHHHHHHHHHHhcCCceecccccccCccceeeEEEEEEeCC
Q 033453 63 GSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHP 106 (119)
Q Consensus 63 GSVt~~dIa~~L~~~~g~~Idkk~I~l~~IK~lG~y~V~I~L~~ 106 (119)
|.+|..||++.|.+. |..|+...|.= +++.+|.- .+....
T Consensus 18 ~~~t~~el~~~l~~~-~~~vs~~Tv~R-~L~~lg~v--~~~~~~ 57 (64)
T 2p5k_A 18 EIETQDELVDMLKQD-GYKVTQATVSR-DIKELHLV--KVPTNN 57 (64)
T ss_dssp CCCSHHHHHHHHHHT-TCCCCHHHHHH-HHHHHTCE--EEEETT
T ss_pred CCCCHHHHHHHHHHh-CCCcCHHHHHH-HHHHcCCE--EEecCC
Confidence 468999999999887 88888877752 26677743 444443
No 34
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=51.34 E-value=6.3 Score=25.53 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=17.8
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|.||..||.++|...
T Consensus 106 vd~~g~lvGiit~~Dil~~l~~~ 128 (136)
T 3lfr_A 106 IDEYGGVAGLVTIEDVLEQIVGD 128 (136)
T ss_dssp ECTTSCEEEEEEHHHHHTTC---
T ss_pred EeCCCCEEEEEEHHHHHHHHhCC
Confidence 45789999999999999987643
No 35
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=49.66 E-value=5 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHhcCCceeccccc
Q 033453 65 VTAQDVVDIIKAQLQRDVDKKIVD 88 (119)
Q Consensus 65 Vt~~dIa~~L~~~~g~~Idkk~I~ 88 (119)
.|-.+|++.|+++ |+.|-||.|.
T Consensus 38 lSD~~I~~~L~~~-Gi~IaRRTVa 60 (76)
T 2ahq_A 38 YSDQEIANILKEK-GFKVARRTVA 60 (76)
T ss_dssp CCHHHHHHHHTTT-SSCCCHHHHH
T ss_pred CCHHHHHHHHHHc-CCCccHHHHH
Confidence 4788999999988 9999999874
No 36
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=49.14 E-value=15 Score=25.12 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=19.7
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|.||..||.++|...
T Consensus 136 vde~g~lvGiIT~~Dil~~l~~~ 158 (173)
T 3ocm_A 136 ADEFGAIEGLVTPIDVFEAIAGE 158 (173)
T ss_dssp ECTTCCEEEEECHHHHHHHHHCC
T ss_pred EeCCCCEEEEEeHHHHHHHHhCc
Confidence 35789999999999999999753
No 37
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=47.96 E-value=12 Score=24.94 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.1
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++.|.||..||..++...
T Consensus 65 d~~~~~~Givt~~dl~~~~~~~ 86 (165)
T 3fhm_A 65 DADGVVLGIFTERDLVKAVAGQ 86 (165)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHH
T ss_pred cCCCeEEEEEEHHHHHHHHHhc
Confidence 4678999999999999988764
No 38
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=47.74 E-value=15 Score=24.75 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.5
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|.||..||.++|...
T Consensus 143 vd~~g~lvGiit~~Dil~~l~~~ 165 (172)
T 3lhh_A 143 VDEYGDLKGLVTLQDMMDALTGE 165 (172)
T ss_dssp ECTTSCEEEEEEHHHHHHHHHTT
T ss_pred EeCCCCEEEEeeHHHHHHHHhCC
Confidence 45678999999999999998753
No 39
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=46.29 E-value=15 Score=23.91 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=19.2
Q ss_pred CCceeecccHHHHHHHHHHhcC
Q 033453 58 GKQIFGSVTAQDVVDIIKAQLQ 79 (119)
Q Consensus 58 ~gkLFGSVt~~dIa~~L~~~~g 79 (119)
+|++-|.||..||..++....+
T Consensus 129 ~g~l~Giit~~dil~~~~~~~~ 150 (164)
T 2pfi_A 129 RGRAVGCVSWVEMKKAISNLTN 150 (164)
T ss_dssp TTEEEEEEEHHHHHHHHHHHHS
T ss_pred CCEEEEEEEHHHHHHHHHhhhC
Confidence 5899999999999999987644
No 40
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=45.22 E-value=11 Score=23.24 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=23.2
Q ss_pred eecccHHHHHHHHHHhc-CCceecccccc
Q 033453 62 FGSVTAQDVVDIIKAQL-QRDVDKKIVDL 89 (119)
Q Consensus 62 FGSVt~~dIa~~L~~~~-g~~Idkk~I~l 89 (119)
+-+||.++|...|.+.+ |+++.-|+-.+
T Consensus 30 L~tvT~K~VR~~Le~~~pg~dLs~kK~~I 58 (70)
T 1q1v_A 30 LEEVTMKQICKKVYENYPTYDLTERKDFI 58 (70)
T ss_dssp GGGCCHHHHHHHHHHHCSSSCCSHHHHHH
T ss_pred HHHHhHHHHHHHHHHHccCCCChHHHHHH
Confidence 57899999999999999 99887665433
No 41
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=45.19 E-value=10 Score=22.86 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=25.6
Q ss_pred ecccHHHHHHHHHHhcCCceecccccccCcccee
Q 033453 63 GSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETG 96 (119)
Q Consensus 63 GSVt~~dIa~~L~~~~g~~Idkk~I~l~~IK~lG 96 (119)
=|+..-+++-.|.+.+|++|+-..+....++++|
T Consensus 38 DSl~~~elv~~lE~~fgi~i~~~~l~~~~~~Tv~ 71 (83)
T 2amw_A 38 DSMAVVNVITALEEYFDFSVDDDEISAQTFETLG 71 (83)
T ss_dssp THHHHHHHHHHHHHHTTCCCCTTTCCGGGSSSHH
T ss_pred CHHHHHHHHHHHHHHhCCeeCHHhhhHHhcCCHH
Confidence 4788888999999999999998776443355554
No 42
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=43.18 E-value=14 Score=24.03 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.2
Q ss_pred CCCCceeecccHHHHHHHHHH
Q 033453 56 GKGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~ 76 (119)
.++|++.|.||..||..++..
T Consensus 68 d~~~~~~Givt~~dl~~~~~~ 88 (149)
T 3k2v_A 68 DDDMNIIGIFTDGDLRRVFDT 88 (149)
T ss_dssp CTTCBEEEEEEHHHHHHHHCS
T ss_pred CCCCcEEEEecHHHHHHHHhc
Confidence 467899999999999998754
No 43
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=42.57 E-value=16 Score=23.62 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=20.8
Q ss_pred CCCceeecccHHHHHHHHHHhc--CCceec
Q 033453 57 KGKQIFGSVTAQDVVDIIKAQL--QRDVDK 84 (119)
Q Consensus 57 ~~gkLFGSVt~~dIa~~L~~~~--g~~Idk 84 (119)
.+|.+||-||+.|+.+.|.+.. |-.+++
T Consensus 69 P~~~~y~~vt~e~v~~il~~~l~~g~~v~~ 98 (110)
T 1m2d_A 69 PDGVWYGQVKPEDVDEIVEKHLKGGEPVER 98 (110)
T ss_dssp TTTEEECSCCGGGHHHHHHHTTTTSCCCGG
T ss_pred eCCEEEecCCHHHHHHHHHHHHHCCcChHH
Confidence 4679999999999988887632 444443
No 44
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=41.94 E-value=10 Score=24.63 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=26.4
Q ss_pred ecccHHHHHHHHHHhcCCceecccccccCcccee
Q 033453 63 GSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETG 96 (119)
Q Consensus 63 GSVt~~dIa~~L~~~~g~~Idkk~I~l~~IK~lG 96 (119)
=|+..-+++-+|.+.+|++|+-..+....++++|
T Consensus 60 DSL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~ 93 (105)
T 2lki_A 60 DSMAVVNVITALEEYFDFSVDDDEISAQTFETLG 93 (105)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHH
T ss_pred cHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHH
Confidence 4788888999999999999998776544466665
No 45
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=40.99 E-value=14 Score=22.86 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.8
Q ss_pred CceeecccHHHHHHHHHH
Q 033453 59 KQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 59 gkLFGSVt~~dIa~~L~~ 76 (119)
|++-|.||..||..++.+
T Consensus 105 ~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 105 DEIIGVISATDILRAKMA 122 (125)
T ss_dssp TEEEEEEEHHHHHHHHC-
T ss_pred CEEEEEEEHHHHHHHHHh
Confidence 899999999999998864
No 46
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=40.95 E-value=17 Score=27.08 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=19.8
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|.||..||.+.+...
T Consensus 238 Vd~~g~lvGiIT~~Dil~~i~~e 260 (286)
T 2oux_A 238 TDYDDHLLGIVTVDDIIDVIDDE 260 (286)
T ss_dssp ECTTCBEEEEEEHHHHHHHHHHH
T ss_pred EcCCCeEEEEEEHHHHHHHHHHH
Confidence 35689999999999999998764
No 47
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=40.71 E-value=42 Score=23.27 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=16.5
Q ss_pred hcccchHHHHHHHHHHHHHHH
Q 033453 7 NLQLFGVLCMEMKMEEERIEA 27 (119)
Q Consensus 7 rNfL~~~~l~~l~~~~~~~~~ 27 (119)
+|||+|++++.|+.+.+....
T Consensus 3 ~~~~T~~g~~~L~~El~~L~~ 23 (158)
T 1grj_A 3 AIPMTLRGAEKLREELDFLKS 23 (158)
T ss_dssp CEEEEHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHh
Confidence 578999999888877666554
No 48
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=40.28 E-value=22 Score=23.85 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.4
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++-|.||.+||..++...
T Consensus 55 d~~~~lvGiit~~Di~~~~~~~ 76 (156)
T 3k6e_A 55 TDEKQFVGTIGLRDIMAYQMEH 76 (156)
T ss_dssp CC-CBEEEEEEHHHHHHHHHHH
T ss_pred cCCCcEEEEEEecchhhhhhhc
Confidence 5678999999999999988764
No 49
>3eyr_A Uncharacterized lipoprotein YCEB; ER542 NESG X-RAY YCEB_COLI P0AB26, structural genomics, PSI- 2, protein structure initiative; 2.01A {Escherichia coli K12} PDB: 3l6i_A
Probab=40.20 E-value=99 Score=22.04 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHHhcCCceecccccccCcc--ceeeEEEEEEeCCC
Q 033453 64 SVTAQDVVDIIKAQLQRDVDKKIVDLPEIR--ETGEYIAQLKLHPE 107 (119)
Q Consensus 64 SVt~~dIa~~L~~~~g~~Idkk~I~l~~IK--~lG~y~V~I~L~~~ 107 (119)
|||-+||-++|.++ ++++++ +-++.+= .+-..+..+.|.++
T Consensus 18 siSE~elq~yL~k~--~~~~~~-~g~~gl~~~~v~L~n~~v~ig~~ 60 (178)
T 3eyr_A 18 TITEQEINQSLAKH--NNFSKD-IGLPGVADAHIVLTNLTSQIGRE 60 (178)
T ss_dssp EEEHHHHHHHHHHH--CCCEEE-EEETTTEEEEEEEEEEEEEESSS
T ss_pred eECHHHHHHHHHHh--CChhhe-eccCceeEEEEEEcCceEecCCC
Confidence 79999999999987 477774 5555533 67778888888883
No 50
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=40.16 E-value=14 Score=23.42 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.1
Q ss_pred CCceeecccHHHHHHHHHHh
Q 033453 58 GKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 58 ~gkLFGSVt~~dIa~~L~~~ 77 (119)
+|++-|.||..||..++...
T Consensus 113 ~g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 113 DGKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp TTEEEEEEEHHHHHHHHHC-
T ss_pred CCEEEEEEEHHHHHHHHHhc
Confidence 58999999999999998653
No 51
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=39.97 E-value=12 Score=22.57 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=27.0
Q ss_pred eecccHHHHHHHHHHhcCCceecccccccCcccee
Q 033453 62 FGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETG 96 (119)
Q Consensus 62 FGSVt~~dIa~~L~~~~g~~Idkk~I~l~~IK~lG 96 (119)
.=|+..-+++-+|.+.+|++|+-..+....++++|
T Consensus 36 lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~ 70 (80)
T 1dv5_A 36 LDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPN 70 (80)
T ss_dssp CCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHH
T ss_pred cChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHH
Confidence 56888889999999999999987665433466655
No 52
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=39.83 E-value=20 Score=23.41 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=18.2
Q ss_pred CCceeecccHHHHHHHHHHh
Q 033453 58 GKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 58 ~gkLFGSVt~~dIa~~L~~~ 77 (119)
+|++-|.||..||.+++...
T Consensus 117 ~g~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 117 GGKLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp TTEEEEEEEHHHHHHHHHTT
T ss_pred CCEEEEEEEHHHHHHHHHHH
Confidence 58999999999999999865
No 53
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=38.58 E-value=53 Score=22.80 Aligned_cols=19 Identities=11% Similarity=-0.080 Sum_probs=14.8
Q ss_pred hcccchHHHHHHHHHHHHH
Q 033453 7 NLQLFGVLCMEMKMEEERI 25 (119)
Q Consensus 7 rNfL~~~~l~~l~~~~~~~ 25 (119)
+|+|+|.+++.|+.+.+..
T Consensus 3 ~~~lT~~g~~~L~~EL~~L 21 (158)
T 2p4v_A 3 TPLVTREGYEKLKQELNYL 21 (158)
T ss_dssp CCEECHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHH
Confidence 5789999998877766555
No 54
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=38.52 E-value=11 Score=26.37 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=26.3
Q ss_pred ecccHHHHHHHHHHhcCCceecccccccCccceeeEEEE
Q 033453 63 GSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQ 101 (119)
Q Consensus 63 GSVt~~dIa~~L~~~~g~~Idkk~I~l~~IK~lG~y~V~ 101 (119)
+.+|-.|+++.|++. |+.+....|.= +|+.+|...|+
T Consensus 18 ~~~tq~eL~~~L~~~-G~~VtqaTisR-DL~eL~~vKv~ 54 (149)
T 1b4a_A 18 DIETQDELVDRLREA-GFNVTQATVSR-DIKEMQLVKVP 54 (149)
T ss_dssp CCCSHHHHHHHHHHT-TCCCCHHHHHH-HHHHTTCEEEE
T ss_pred CCccHHHHHHHHHHc-CCCcCHHHHHH-HHHHcCCeEEE
Confidence 567889999999988 99888766642 25555554443
No 55
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=38.22 E-value=19 Score=26.02 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.0
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|.||..||.+++...
T Consensus 264 vd~~g~~~Giit~~Dil~~l~~~ 286 (296)
T 3ddj_A 264 LNKDNTIRGIITERDLLIALHHI 286 (296)
T ss_dssp ECTTSCEEEEEEHHHHHHHHHHH
T ss_pred ECCCCeEEEEEcHHHHHHHHHHH
Confidence 35689999999999999999865
No 56
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=37.97 E-value=17 Score=23.99 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=16.9
Q ss_pred CceeecccHHHHHHHHHHh
Q 033453 59 KQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 59 gkLFGSVt~~dIa~~L~~~ 77 (119)
|++-|.||..||..++...
T Consensus 118 g~lvGiit~~dil~~~~~~ 136 (160)
T 2o16_A 118 DVLVGIITDSDFVTIAINL 136 (160)
T ss_dssp TEEEEEECHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHH
Confidence 8999999999999987653
No 57
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=37.96 E-value=11 Score=24.20 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.3
Q ss_pred CCCCceeecccHHHHHHHHHH
Q 033453 56 GKGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~ 76 (119)
.++|++.|.||..||..++..
T Consensus 108 d~~g~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 108 NKNGELVGVLSIRDLCFERAI 128 (141)
T ss_dssp CTTSCEEEEEEHHHHHSCHHH
T ss_pred cCCCcEEEEEEHHHHHHHHHH
Confidence 467899999999999876643
No 58
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=37.86 E-value=14 Score=24.32 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=16.8
Q ss_pred ceeecccHHHHHHHHHHh
Q 033453 60 QIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 60 kLFGSVt~~dIa~~L~~~ 77 (119)
++-|.||..||..++.+.
T Consensus 128 ~~vGiit~~dil~~l~~~ 145 (159)
T 3fv6_A 128 EVIGRVTKTNMTKILVSL 145 (159)
T ss_dssp EEEEEEEHHHHHHHHHHH
T ss_pred eEEEEEEHHHHHHHHHHH
Confidence 999999999999999875
No 59
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=36.91 E-value=20 Score=23.87 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.8
Q ss_pred CCceeecccHHHHHHHHHHhc
Q 033453 58 GKQIFGSVTAQDVVDIIKAQL 78 (119)
Q Consensus 58 ~gkLFGSVt~~dIa~~L~~~~ 78 (119)
+|++-|.||..||..++....
T Consensus 147 ~g~~vGiit~~dll~~l~~~~ 167 (185)
T 2j9l_A 147 NGRLLGIITKKDVLKHIAQMA 167 (185)
T ss_dssp TTEEEEEEEHHHHHHHHHHHC
T ss_pred CCEEEEEEEHHHHHHHHHHhh
Confidence 789999999999999998763
No 60
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=36.00 E-value=20 Score=26.28 Aligned_cols=23 Identities=30% Similarity=0.552 Sum_probs=17.8
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|.||..||.+.+...
T Consensus 236 vd~~g~lvGivT~~Dil~~i~~e 258 (278)
T 2yvy_A 236 VDEEGRLVGIVTVDDVLDVLEAE 258 (278)
T ss_dssp ECTTSBEEEEEEHHHHHHHC---
T ss_pred EeCCCeEEEEEEHHHHHHHHHHH
Confidence 35679999999999999988654
No 61
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=35.95 E-value=10 Score=24.63 Aligned_cols=12 Identities=8% Similarity=-0.033 Sum_probs=10.0
Q ss_pred hhcccchHHHHH
Q 033453 6 GNLQLFGVLCME 17 (119)
Q Consensus 6 arNfL~~~~l~~ 17 (119)
|++||+|+.++.
T Consensus 12 Ak~~LiPkql~~ 23 (94)
T 1qzm_A 12 AKRHLLPKQIER 23 (94)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHhccHHHHHH
Confidence 899999997754
No 62
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=35.85 E-value=41 Score=23.51 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=18.9
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++-|.||..||..++...
T Consensus 110 d~~g~lvGiit~~Dil~~~~~~ 131 (213)
T 1vr9_A 110 DEEMRLKGAVSLHDFLEALIEA 131 (213)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHS
T ss_pred cCCCEEEEEEEHHHHHHHHHHH
Confidence 4568999999999999998764
No 63
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.64 E-value=61 Score=18.34 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=19.1
Q ss_pred cchhcccchHHHHHHHHHHHHHHHHHHH
Q 033453 4 VFGNLQLFGVLCMEMKMEEERIEAEKKR 31 (119)
Q Consensus 4 gyarNfL~~~~l~~l~~~~~~~~~~~~~ 31 (119)
|-|||--+.+.++.++....+.++.++.
T Consensus 1 gsarnaylrkkiarlkkdnlqlerdeqn 28 (52)
T 3he5_B 1 GSARNAYLRKKIARLKKDNLQLERDEQN 28 (52)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHhhhhhhhhhhHhh
Confidence 5689988888888777665555554433
No 64
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=35.60 E-value=12 Score=23.02 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=15.8
Q ss_pred CCceeecccHHHHHHHHHH
Q 033453 58 GKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 58 ~gkLFGSVt~~dIa~~L~~ 76 (119)
+|.+||.||+.++.+.|.+
T Consensus 66 ~~~~y~~vt~e~v~~il~~ 84 (85)
T 2auv_A 66 GEKVYGNVTPGQVKKILAE 84 (85)
T ss_dssp GGGCCCCSSSSHHHHHHHH
T ss_pred CCEEECCCCHHHHHHHHHh
Confidence 3689999999999887754
No 65
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=33.79 E-value=17 Score=21.41 Aligned_cols=25 Identities=4% Similarity=0.248 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHHhcCCceecccccc
Q 033453 64 SVTAQDVVDIIKAQLQRDVDKKIVDL 89 (119)
Q Consensus 64 SVt~~dIa~~L~~~~g~~Idkk~I~l 89 (119)
++|..+|-.-|+.. |+++|.-++.+
T Consensus 16 ~~t~~~I~~il~aa-Gveve~~~~~~ 40 (58)
T 3a1y_A 16 EINEENLKAVLQAA-GVEPEEARIKA 40 (58)
T ss_dssp CCCHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHHHH
Confidence 89999999999887 99999776543
No 66
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=32.82 E-value=46 Score=24.29 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.2
Q ss_pred cCCCCceeecccHHHHHHHHHH
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~ 76 (119)
+.++|++-|.||..||.++|..
T Consensus 299 vd~~~~l~Giit~~Dil~~l~~ 320 (323)
T 3t4n_C 299 VDDVGRLVGVLTLSDILKYILL 320 (323)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHH
T ss_pred ECCCCcEEEEEEHHHHHHHHHh
Confidence 4568999999999999999865
No 67
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=31.69 E-value=7.3 Score=26.22 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=17.1
Q ss_pred CCCceeecccHHHHHHHHHH
Q 033453 57 KGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 57 ~~gkLFGSVt~~dIa~~L~~ 76 (119)
++|++-|-||..||.++|..
T Consensus 143 d~g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 143 QDGVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp ETTEEEEEEEHHHHTTTSCC
T ss_pred ECCEEEEEEEHHHHHHHHHh
Confidence 46899999999999988753
No 68
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=31.61 E-value=27 Score=25.75 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=20.3
Q ss_pred CCCCceeecccHHHHHHHHHHhcC
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQLQ 79 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~~g 79 (119)
.++|++-|.||..||..++....|
T Consensus 303 d~~g~l~Giit~~Dil~~~~~~~~ 326 (330)
T 2v8q_E 303 DEHDVVKGIVSLSDILQALVLTGG 326 (330)
T ss_dssp CTTSBEEEEEEHHHHHHHHHSSCC
T ss_pred cCCCcEEEEEeHHHHHHHHHhhcc
Confidence 457899999999999999986544
No 69
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=31.45 E-value=26 Score=24.83 Aligned_cols=22 Identities=5% Similarity=0.238 Sum_probs=18.8
Q ss_pred CCCCceeecccHHHHHHHHHHh
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
.++|++.|.||..||..++...
T Consensus 45 d~~~~l~Giit~~di~~~~~~~ 66 (245)
T 3l2b_A 45 DGNNHLLGMLSTSNITATYMDI 66 (245)
T ss_dssp CTTCBEEEEEEHHHHHHHHHCC
T ss_pred cCCCEEEEEEEHHHHHHHHHHh
Confidence 4678999999999999998643
No 70
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=31.34 E-value=24 Score=22.49 Aligned_cols=20 Identities=15% Similarity=0.463 Sum_probs=15.2
Q ss_pred CCceeecccHHHHHHHHHHh
Q 033453 58 GKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 58 ~gkLFGSVt~~dIa~~L~~~ 77 (119)
--.|||+|+..++-..+...
T Consensus 7 ~R~LFG~vd~eEl~~~f~~~ 26 (84)
T 1jsu_C 7 CRNLFGPVDHEELTRDLEKH 26 (84)
T ss_dssp CCCSSCCCCHHHHHHHHHHH
T ss_pred hhhcCCCCCHHHHHHHHHHH
Confidence 34599999998887776544
No 71
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=30.77 E-value=23 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHHhcCCceecccccc
Q 033453 64 SVTAQDVVDIIKAQLQRDVDKKIVDL 89 (119)
Q Consensus 64 SVt~~dIa~~L~~~~g~~Idkk~I~l 89 (119)
++|..||...|+.. |+++|--++.+
T Consensus 18 ~~ta~~I~~il~aa-Gvevd~~~~~~ 42 (70)
T 2lbf_B 18 SPSAKDIKKILDSV-GIEADDDRLNK 42 (70)
T ss_dssp SCCHHHHHHHHHTT-TCCCCTTHHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHHHH
Confidence 79999999999887 99999876643
No 72
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=30.51 E-value=22 Score=26.40 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=17.7
Q ss_pred CCCceeecccHHHHHHHHHH
Q 033453 57 KGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 57 ~~gkLFGSVt~~dIa~~L~~ 76 (119)
++|+|=|.||-+|+..+|..
T Consensus 227 ~~GrLVGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 227 SMGKLVGVVALAEIQAAIEG 246 (250)
T ss_dssp ETTEEEEEEEHHHHHHHHHC
T ss_pred ECCEEEEEEEHHHHHHHHHH
Confidence 36899999999999999863
No 73
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=30.05 E-value=27 Score=23.00 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.9
Q ss_pred ecccHHHHHHHHHHhcCCc
Q 033453 63 GSVTAQDVVDIIKAQLQRD 81 (119)
Q Consensus 63 GSVt~~dIa~~L~~~~g~~ 81 (119)
|.||..+++++|+.++|++
T Consensus 47 g~i~e~~l~~~la~~~g~p 65 (149)
T 2d28_C 47 GLVSERDHAETCAEVLGLP 65 (149)
T ss_dssp TCSCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHhhCCc
Confidence 7799999999999998853
No 74
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=29.83 E-value=58 Score=19.07 Aligned_cols=22 Identities=5% Similarity=-0.105 Sum_probs=18.1
Q ss_pred ecccHHHHHHHHHHhcCCceecc
Q 033453 63 GSVTAQDVVDIIKAQLQRDVDKK 85 (119)
Q Consensus 63 GSVt~~dIa~~L~~~~g~~Idkk 85 (119)
=.++.+|+...|++. |+.+.|.
T Consensus 3 mp~~~~elik~L~~~-G~~~~r~ 24 (70)
T 1whz_A 3 MPPRPEEVARKLRRL-GFVERMA 24 (70)
T ss_dssp CCCCHHHHHHHHHHT-TCEEEEE
T ss_pred CCCCHHHHHHHHHHC-CCEEeCC
Confidence 357899999999987 9988763
No 75
>1x0h_A P195, RAS GTPase-activating-like protein iqgap1; cell adhesion, beta-sandwich, protein-protein interaction, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.332.1.1
Probab=29.06 E-value=23 Score=23.60 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=29.6
Q ss_pred CCCCceeecccHHHHHHHHHHhcCCcee--------cccccccCcc---ceeeEEEEEEeCC
Q 033453 56 GKGKQIFGSVTAQDVVDIIKAQLQRDVD--------KKIVDLPEIR---ETGEYIAQLKLHP 106 (119)
Q Consensus 56 g~~gkLFGSVt~~dIa~~L~~~~g~~Id--------kk~I~l~~IK---~lG~y~V~I~L~~ 106 (119)
|..|+-|||.. --|..|.++ |+=++ .++|.+ .|. +.|.|.|..+...
T Consensus 1 ~~~~~kfgs~K--ySa~~L~ek-GVL~~i~~~~~~~~~~i~f-~IS~s~e~GvF~I~~~~~g 58 (112)
T 1x0h_A 1 GSSGSSGISLK--YTAARLHEK-GVLLEIEDLQVNQFKNVIF-EISPTEEVGDFEVKAKFMG 58 (112)
T ss_dssp CCSCCCCCCEE--EEHHHHHHH-TSEEEETTSCTGGGGGCEE-EEECCSSSSCEEEEEESSC
T ss_pred CCCccccCCEE--EcHHHHhhC-CeEEEccCCCccccCcEEE-EEEcCCCCeEEEEEEEeCC
Confidence 45678899873 335667777 87555 122322 154 6899999887643
No 76
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=27.60 E-value=60 Score=23.80 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=19.8
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|.||..||..++...
T Consensus 294 vd~~g~l~Giit~~dil~~~~~~ 316 (334)
T 2qrd_G 294 VDENLKLEGILSLADILNYIIYD 316 (334)
T ss_dssp ECTTCBEEEEEEHHHHHHHHHSC
T ss_pred ECCCCeEEEEEeHHHHHHHHHhc
Confidence 35678999999999999999764
No 77
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=27.49 E-value=15 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=15.1
Q ss_pred CceeecccHHHHHHHHH
Q 033453 59 KQIFGSVTAQDVVDIIK 75 (119)
Q Consensus 59 gkLFGSVt~~dIa~~L~ 75 (119)
|++-|.||..||..++.
T Consensus 114 g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 114 HRLVGIVTEADIARHLP 130 (133)
T ss_dssp TEEEEEEEHHHHHHTCC
T ss_pred CEEEEEEEHHHHHHHHH
Confidence 79999999999988764
No 78
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=27.38 E-value=27 Score=21.30 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHhcCCceecccccc
Q 033453 64 SVTAQDVVDIIKAQLQRDVDKKIVDL 89 (119)
Q Consensus 64 SVt~~dIa~~L~~~~g~~Idkk~I~l 89 (119)
++|..+|...|+.. |+++|.-++.+
T Consensus 22 ~~ta~~I~~il~Aa-Gveve~~~~~l 46 (69)
T 2lbf_A 22 TVTEDKINALIKAA-GVNVEPFWPGL 46 (69)
T ss_dssp CCCHHHHHHHHHHH-TCCCCTHHHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHHHH
Confidence 89999999999887 99998766543
No 79
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=26.32 E-value=54 Score=26.40 Aligned_cols=23 Identities=30% Similarity=0.552 Sum_probs=19.8
Q ss_pred cCCCCceeecccHHHHHHHHHHh
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKAQ 77 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~~ 77 (119)
+.++|++-|-||..||.+.+...
T Consensus 256 VDe~g~lvGiIT~~Dil~~i~~e 278 (473)
T 2zy9_A 256 VDEEGRLVGIVTVDDVLDVLEAE 278 (473)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHHH
T ss_pred EcCCCEEEEEEehHhhHHHHHHH
Confidence 45789999999999999998754
No 80
>1im3_D Cytomegalovirus protein US2; beta sheet, beta sandwhich, immunoglobulin (IG) fold, immunoglobulin (IG)-like domain, protein complex; 2.20A {Human herpesvirus 5} SCOP: b.1.18.5
Probab=25.20 E-value=21 Score=22.83 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=7.7
Q ss_pred CCCcee--eccc
Q 033453 57 KGKQIF--GSVT 66 (119)
Q Consensus 57 ~~gkLF--GSVt 66 (119)
++|++| |||+
T Consensus 13 ~ng~~f~rgsi~ 24 (95)
T 1im3_D 13 DNGKLFARGSIV 24 (95)
T ss_dssp CSSEEEEEEEEE
T ss_pred eCCeEEeeceEe
Confidence 689999 5665
No 81
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.87 E-value=36 Score=20.15 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=18.4
Q ss_pred ecccHHHHHHHHHHhcCCceecccc
Q 033453 63 GSVTAQDVVDIIKAQLQRDVDKKIV 87 (119)
Q Consensus 63 GSVt~~dIa~~L~~~~g~~Idkk~I 87 (119)
|.+|..||++.+.+. +..|++-.|
T Consensus 32 ~~~s~~el~~~l~~~-~~~is~~TV 55 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDM-GEEIGLATV 55 (83)
T ss_dssp SSBCHHHHHHHHHHT-TCCCCHHHH
T ss_pred CCCCHHHHHHHHHHh-CCCCCHhhH
Confidence 468899999999877 667776555
No 82
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=24.78 E-value=57 Score=21.26 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=14.7
Q ss_pred ecCCCCceeecccHHHHH
Q 033453 54 KGGKGKQIFGSVTAQDVV 71 (119)
Q Consensus 54 k~g~~gkLFGSVt~~dIa 71 (119)
=+.++|++-|.||..||.
T Consensus 138 Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 138 VIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp EECTTSSEEEEEEHHHHC
T ss_pred EECCCCCEEEEEEHHHhc
Confidence 346788999999999984
No 83
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=24.60 E-value=47 Score=20.69 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=20.4
Q ss_pred ecccHHHHHHHHHHhcCCceecccc
Q 033453 63 GSVTAQDVVDIIKAQLQRDVDKKIV 87 (119)
Q Consensus 63 GSVt~~dIa~~L~~~~g~~Idkk~I 87 (119)
|.|+..++..+|... |..++...+
T Consensus 51 G~I~~~El~~~l~~l-g~~~~~~ei 74 (100)
T 2lv7_A 51 GFISKQELGTAMRSL-GYMPNEVEL 74 (100)
T ss_dssp SCBCHHHHHHHHHHH-TCCCCTTTH
T ss_pred CcCCHHHHHHHHHHh-CCCCCHHHH
Confidence 889999999999876 988877654
No 84
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.45 E-value=1.5e+02 Score=19.93 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 033453 14 LCMEMKMEEERIEAEKKRVKEEAQQLALIFET 45 (119)
Q Consensus 14 ~l~~l~~~~~~~~~~~~~~~~~a~~la~kL~~ 45 (119)
.|+.|+.+.+..+.+..+...+++.+-+++++
T Consensus 93 ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 93 KIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777888888877765
No 85
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=24.11 E-value=66 Score=20.13 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=21.5
Q ss_pred EEecCCCCceeecccHHHHHHHHHHhcCCce
Q 033453 52 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDV 82 (119)
Q Consensus 52 ~~k~g~~gkLFGSVt~~dIa~~L~~~~g~~I 82 (119)
-+-.|++|...|.++..+-.....+. |.++
T Consensus 16 Vrli~~~Ge~lGv~~~~eAl~~A~e~-~LDL 45 (78)
T 1tif_A 16 VRLIDQNGDQLGIKSKQEALEIAARR-NLDL 45 (78)
T ss_dssp EEEECTTSCEEEEEEHHHHHHHHHHT-TCEE
T ss_pred EEEECCCCcCCCcccHHHHHHHHHHc-CCCE
Confidence 44578999999999988866655554 6443
No 86
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=23.13 E-value=62 Score=26.51 Aligned_cols=22 Identities=18% Similarity=0.287 Sum_probs=19.7
Q ss_pred cCCCCceeecccHHHHHHHHHH
Q 033453 55 GGKGKQIFGSVTAQDVVDIIKA 76 (119)
Q Consensus 55 ~g~~gkLFGSVt~~dIa~~L~~ 76 (119)
+.++|++.|.||.+||.+++..
T Consensus 213 VDe~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 213 VDNNGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHC
T ss_pred EeCCCCEeeeccHHHHHHhhhc
Confidence 4678999999999999999875
No 87
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=22.98 E-value=1.1e+02 Score=18.35 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=20.0
Q ss_pred ccccC--ccceeeEEEEEEeCCCe---EEEEEEEEe
Q 033453 87 VDLPE--IRETGEYIAQLKLHPEV---TARIRLNVF 117 (119)
Q Consensus 87 I~l~~--IK~lG~y~V~I~L~~~V---~a~i~V~V~ 117 (119)
+.+.. ...-|.|.+.+.-.++. .+.+.|.|.
T Consensus 83 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (124)
T 1neu_A 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (124)
T ss_dssp EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred EEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEe
Confidence 44444 56789999999987664 677777775
No 88
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.91 E-value=1.6e+02 Score=20.36 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 033453 14 LCMEMKMEEERIEAEKKRVKEEAQQLALIFETV 46 (119)
Q Consensus 14 ~l~~l~~~~~~~~~~~~~~~~~a~~la~kL~~~ 46 (119)
.|+.|+.+.+..+.+..+...+++.+-+++++.
T Consensus 93 ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 93 KIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777778888888777763
No 89
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=22.78 E-value=1.3e+02 Score=18.52 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=19.5
Q ss_pred ccceeeEEEEEEeCCC---eEEEEEEEEe
Q 033453 92 IRETGEYIAQLKLHPE---VTARIRLNVF 117 (119)
Q Consensus 92 IK~lG~y~V~I~L~~~---V~a~i~V~V~ 117 (119)
-..-|.|.|++.+..+ ..+...|.|.
T Consensus 51 Y~~~G~YtV~Ltv~~g~~~~~a~~~V~V~ 79 (80)
T 1b4r_A 51 YVLPGRYHVTAVLALGAGSALLGTDVQVE 79 (80)
T ss_dssp ECSSEEEEEEEEEECSSCEEEEEEEEEEB
T ss_pred CCCCcEEEEEEEEEeCCceEEEEEEEEEE
Confidence 7788999999888766 3466666664
No 90
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=22.70 E-value=53 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=17.6
Q ss_pred eeecccHHHHHHHHHH---hcCCceeccc
Q 033453 61 IFGSVTAQDVVDIIKA---QLQRDVDKKI 86 (119)
Q Consensus 61 LFGSVt~~dIa~~L~~---~~g~~Idkk~ 86 (119)
+||+.|-.||.+.+.+ ..|++++=++
T Consensus 23 iYG~~tl~di~~~l~~~a~~~g~~~~~~Q 51 (146)
T 1h05_A 23 VYGGTTHDELVALIEREAAELGLKAVVRQ 51 (146)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCcCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 8999999999999875 3577776443
No 91
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=22.24 E-value=56 Score=23.01 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=20.6
Q ss_pred eeecccHHHHHHHHHH---hcCCceeccc
Q 033453 61 IFGSVTAQDVVDIIKA---QLQRDVDKKI 86 (119)
Q Consensus 61 LFGSVt~~dIa~~L~~---~~g~~Idkk~ 86 (119)
+||+.|-.||.+.+.+ ..|++++=++
T Consensus 20 iYG~~tl~di~~~l~~~a~~~g~~v~~~Q 48 (149)
T 2uyg_A 20 VYGRTTLEELEALCEAWGAELGLGVVFRQ 48 (149)
T ss_dssp SSCSCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCcCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 8999999999999875 3577776543
No 92
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.52 E-value=1.2e+02 Score=16.90 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033453 11 FGVLCMEMKMEEERIEAEKKRVKEEAQQ 38 (119)
Q Consensus 11 ~~~~l~~l~~~~~~~~~~~~~~~~~a~~ 38 (119)
.|+.++.++.+.+..+++-+..+...++
T Consensus 18 speelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 18 SPEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777766666555544444333
No 93
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=20.99 E-value=52 Score=23.38 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=20.6
Q ss_pred eeecccHHHHHHHHHH---hcCCceeccc
Q 033453 61 IFGSVTAQDVVDIIKA---QLQRDVDKKI 86 (119)
Q Consensus 61 LFGSVt~~dIa~~L~~---~~g~~Idkk~ 86 (119)
+||+.|-.||.+.+.+ ..|++++=++
T Consensus 27 iYG~~Tl~di~~~l~~~a~~~g~~v~~~Q 55 (156)
T 1gtz_A 27 IYGSDTLADVEALCVKAAAAHGGTVDFRQ 55 (156)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 8999999999999875 3577776443
No 94
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=20.50 E-value=52 Score=23.32 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.0
Q ss_pred ceeecccHHHHHHHHHH---hcCCceeccc
Q 033453 60 QIFGSVTAQDVVDIIKA---QLQRDVDKKI 86 (119)
Q Consensus 60 kLFGSVt~~dIa~~L~~---~~g~~Idkk~ 86 (119)
.+||+.|-.||.+.+.+ ..|++++=++
T Consensus 21 ~iYG~~Tl~di~~~l~~~a~~~g~~l~~~Q 50 (154)
T 1uqr_A 21 HIYGSQTLSDIEQHLQQSAQAQGYELDYFQ 50 (154)
T ss_dssp GGTTCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 38999999999999875 3577777544
Done!