Query 033454
Match_columns 119
No_of_seqs 107 out of 1217
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00583 Acetyltransf_1: Acety 99.8 1.4E-18 3.1E-23 98.3 10.2 80 3-83 2-83 (83)
2 TIGR02406 ectoine_EctA L-2,4-d 99.8 1.6E-18 3.6E-23 109.5 8.7 109 4-114 47-155 (157)
3 PRK10151 ribosomal-protein-L7/ 99.8 1.2E-17 2.6E-22 107.2 10.0 83 4-88 74-156 (179)
4 TIGR02382 wecD_rffC TDP-D-fuco 99.7 1.6E-17 3.5E-22 107.9 9.9 81 3-87 105-185 (191)
5 PRK10809 ribosomal-protein-S5- 99.7 3.8E-17 8.3E-22 106.1 10.4 84 4-88 84-167 (194)
6 PF13420 Acetyltransf_4: Acety 99.7 4.5E-17 9.7E-22 102.1 9.9 83 4-88 58-140 (155)
7 PRK10146 aminoalkylphosphonic 99.7 2.9E-17 6.3E-22 101.7 7.8 84 2-86 52-137 (144)
8 PRK10140 putative acetyltransf 99.7 7.5E-17 1.6E-21 101.5 9.7 85 3-88 57-142 (162)
9 PF13302 Acetyltransf_3: Acety 99.7 2.7E-16 5.8E-21 96.9 11.4 78 4-83 65-142 (142)
10 PRK15130 spermidine N1-acetylt 99.7 1.7E-16 3.6E-21 102.5 9.6 83 3-87 63-145 (186)
11 PRK10975 TDP-fucosamine acetyl 99.7 2.8E-16 6.1E-21 102.2 10.4 80 4-87 109-188 (194)
12 PRK03624 putative acetyltransf 99.7 1.6E-16 3.4E-21 97.4 8.6 81 2-87 50-130 (140)
13 TIGR01575 rimI ribosomal-prote 99.7 3.1E-16 6.7E-21 95.2 9.2 82 3-89 37-118 (131)
14 TIGR03585 PseH pseudaminic aci 99.7 3.8E-16 8.2E-21 97.9 9.0 83 3-88 57-139 (156)
15 COG1670 RimL Acetyltransferase 99.7 4.7E-16 1E-20 99.3 9.4 84 5-89 76-160 (187)
16 KOG3139 N-acetyltransferase [G 99.7 7.2E-16 1.6E-20 95.6 9.7 81 8-89 68-148 (165)
17 PF13523 Acetyltransf_8: Acety 99.7 5E-16 1.1E-20 97.3 9.1 88 2-89 53-143 (152)
18 PRK09491 rimI ribosomal-protei 99.7 1.6E-15 3.5E-20 94.3 9.6 81 3-88 46-126 (146)
19 PTZ00330 acetyltransferase; Pr 99.6 2.5E-15 5.5E-20 93.3 10.0 80 3-86 58-140 (147)
20 PF13508 Acetyltransf_7: Acety 99.6 3.1E-15 6.7E-20 84.2 8.8 72 2-84 8-79 (79)
21 TIGR03827 GNAT_ablB putative b 99.6 1.5E-15 3.2E-20 103.3 8.3 83 2-87 163-245 (266)
22 PRK10314 putative acyltransfer 99.6 4.2E-15 9.1E-20 93.6 8.7 80 4-87 55-134 (153)
23 PLN02706 glucosamine 6-phospha 99.6 1E-14 2.2E-19 91.0 9.6 78 5-86 63-143 (150)
24 COG0456 RimI Acetyltransferase 99.6 4.1E-14 8.8E-19 90.3 10.3 82 7-89 72-156 (177)
25 TIGR03448 mycothiol_MshD mycot 99.6 4.5E-14 9.7E-19 96.9 10.7 81 5-87 208-288 (292)
26 COG1246 ArgA N-acetylglutamate 99.6 4.1E-14 8.9E-19 87.7 9.1 81 1-88 44-124 (153)
27 PF13673 Acetyltransf_10: Acet 99.6 2.9E-14 6.3E-19 85.3 8.3 70 1-82 48-117 (117)
28 TIGR03103 trio_acet_GNAT GNAT- 99.5 1.1E-13 2.3E-18 102.3 10.9 84 5-89 133-219 (547)
29 PRK10514 putative acetyltransf 99.5 5.3E-14 1.2E-18 87.2 7.7 71 4-88 57-127 (145)
30 PRK07757 acetyltransferase; Pr 99.5 1.3E-13 2.9E-18 86.2 8.9 76 3-87 47-122 (152)
31 PRK07922 N-acetylglutamate syn 99.5 2E-13 4.3E-18 87.2 9.2 75 4-87 53-127 (169)
32 KOG3216 Diamine acetyltransfer 99.5 2.4E-13 5.3E-18 83.8 9.0 82 4-86 62-145 (163)
33 PRK10562 putative acetyltransf 99.5 1.4E-13 3E-18 85.6 8.1 72 3-87 54-125 (145)
34 PHA01807 hypothetical protein 99.5 1.3E-13 2.9E-18 86.6 8.1 79 2-81 58-137 (153)
35 COG1247 Sortase and related ac 99.5 3.4E-13 7.4E-18 85.5 9.8 84 4-89 60-145 (169)
36 PF08445 FR47: FR47-like prote 99.5 9.3E-13 2E-17 75.4 9.7 60 25-86 22-81 (86)
37 PHA00673 acetyltransferase dom 99.5 6.3E-13 1.4E-17 83.2 9.3 84 2-87 60-146 (154)
38 PLN02825 amino-acid N-acetyltr 99.5 4.7E-13 1E-17 97.8 9.2 80 2-88 412-491 (515)
39 cd02169 Citrate_lyase_ligase C 99.4 9.1E-13 2E-17 90.8 8.2 72 3-86 12-83 (297)
40 PRK09831 putative acyltransfer 99.4 6.2E-13 1.3E-17 82.9 6.8 71 2-89 58-128 (147)
41 TIGR03448 mycothiol_MshD mycot 99.4 9.6E-13 2.1E-17 90.3 8.2 77 3-87 52-128 (292)
42 PF13527 Acetyltransf_9: Acety 99.4 1.4E-12 2.9E-17 79.2 7.4 78 2-85 46-127 (127)
43 TIGR01686 FkbH FkbH-like domai 99.4 2.8E-12 6.2E-17 89.4 9.5 76 5-85 242-319 (320)
44 PRK05279 N-acetylglutamate syn 99.4 2.1E-12 4.6E-17 93.4 9.1 79 2-87 339-417 (441)
45 TIGR01890 N-Ac-Glu-synth amino 99.4 2.3E-12 5E-17 93.0 8.9 80 2-88 327-406 (429)
46 PRK12308 bifunctional arginino 99.4 2.3E-12 5E-17 96.5 8.8 79 2-89 508-586 (614)
47 PF08444 Gly_acyl_tr_C: Aralky 99.4 3.3E-12 7E-17 72.6 7.3 77 1-86 3-79 (89)
48 KOG2488 Acetyltransferase (GNA 99.3 6.9E-12 1.5E-16 79.9 7.7 81 5-87 101-182 (202)
49 KOG4135 Predicted phosphogluco 99.3 9E-12 1.9E-16 76.6 7.8 92 6-97 82-180 (185)
50 COG3393 Predicted acetyltransf 99.3 1.5E-11 3.2E-16 82.2 8.7 79 4-87 184-262 (268)
51 PRK13688 hypothetical protein; 99.3 1.3E-11 2.7E-16 78.0 7.5 77 3-88 51-134 (156)
52 COG3981 Predicted acetyltransf 99.3 1.3E-11 2.9E-16 77.6 6.3 83 3-87 75-159 (174)
53 TIGR00124 cit_ly_ligase [citra 99.3 2.7E-11 5.8E-16 84.7 7.7 75 3-89 37-111 (332)
54 COG2153 ElaA Predicted acyltra 99.2 1.5E-10 3.2E-15 71.0 8.5 80 4-87 57-136 (155)
55 KOG3235 Subunit of the major N 99.2 1.2E-10 2.7E-15 72.4 8.3 84 4-87 49-135 (193)
56 COG3153 Predicted acetyltransf 99.2 2E-11 4.3E-16 77.6 4.7 85 1-92 50-136 (171)
57 KOG3396 Glucosamine-phosphate 99.2 1.5E-10 3.2E-15 70.2 7.7 78 5-86 63-143 (150)
58 PRK01346 hypothetical protein; 99.2 2.6E-10 5.6E-15 81.9 8.8 79 3-87 53-136 (411)
59 cd04301 NAT_SF N-Acyltransfera 99.1 6.8E-10 1.5E-14 58.4 7.2 61 2-64 4-64 (65)
60 KOG3138 Predicted N-acetyltran 99.0 1E-09 2.3E-14 70.6 5.8 68 25-93 90-158 (187)
61 TIGR01211 ELP3 histone acetylt 99.0 5.1E-09 1.1E-13 77.1 9.8 78 5-86 422-515 (522)
62 KOG3397 Acetyltransferases [Ge 99.0 2.2E-09 4.8E-14 67.9 6.7 78 5-88 65-142 (225)
63 KOG3234 Acetyltransferase, (GN 99.0 8.9E-09 1.9E-13 64.1 8.4 83 4-87 49-131 (173)
64 PF12746 GNAT_acetyltran: GNAT 98.9 2.9E-08 6.4E-13 67.5 9.0 79 3-89 171-249 (265)
65 PF14542 Acetyltransf_CG: GCN5 98.7 2.7E-07 5.9E-12 51.7 8.7 67 4-80 6-72 (78)
66 PF13718 GNAT_acetyltr_2: GNAT 98.6 1.6E-07 3.5E-12 61.1 6.6 66 24-90 90-179 (196)
67 KOG4144 Arylalkylamine N-acety 98.6 8.1E-08 1.7E-12 59.8 4.1 80 5-87 70-161 (190)
68 COG3818 Predicted acetyltransf 98.5 7.4E-07 1.6E-11 54.1 7.5 84 3-87 51-148 (167)
69 COG1444 Predicted P-loop ATPas 98.4 1.4E-06 3E-11 66.5 6.8 69 24-95 531-599 (758)
70 COG3053 CitC Citrate lyase syn 98.3 4.8E-06 1.1E-10 57.0 7.4 72 4-87 44-115 (352)
71 COG2388 Predicted acetyltransf 98.2 5E-06 1.1E-10 48.5 5.3 56 2-61 20-75 (99)
72 PF12568 DUF3749: Acetyltransf 98.2 4.6E-05 1E-09 46.3 9.1 76 4-86 45-124 (128)
73 COG0454 WecD Histone acetyltra 98.0 1.3E-05 2.8E-10 46.0 4.7 44 30-82 87-130 (156)
74 COG4552 Eis Predicted acetyltr 98.0 1.4E-05 2.9E-10 56.1 4.9 59 23-87 69-127 (389)
75 COG5628 Predicted acetyltransf 98.0 6.6E-05 1.4E-09 45.0 7.1 74 5-84 45-120 (143)
76 PF06852 DUF1248: Protein of u 97.6 0.0011 2.5E-08 42.8 8.3 79 4-87 54-137 (181)
77 PF00765 Autoind_synth: Autoin 97.3 0.0032 7E-08 40.8 8.4 79 4-86 52-154 (182)
78 PRK13834 putative autoinducer 97.2 0.011 2.4E-07 39.1 10.1 79 4-86 61-164 (207)
79 TIGR03694 exosort_acyl putativ 97.2 0.0093 2E-07 40.3 9.7 59 23-85 110-196 (241)
80 PF13480 Acetyltransf_6: Acety 97.1 0.0047 1E-07 37.4 7.0 59 3-66 77-135 (142)
81 PF13880 Acetyltransf_13: ESCO 96.9 0.0018 3.9E-08 35.4 3.5 30 24-53 5-34 (70)
82 COG1243 ELP3 Histone acetyltra 96.7 0.0026 5.6E-08 46.5 4.1 50 33-86 459-508 (515)
83 PF01233 NMT: Myristoyl-CoA:pr 96.7 0.017 3.6E-07 36.6 7.0 61 3-64 85-150 (162)
84 cd04264 DUF619-NAGS DUF619 dom 96.5 0.0076 1.6E-07 35.3 4.6 61 5-72 16-76 (99)
85 PHA01733 hypothetical protein 96.4 0.0059 1.3E-07 38.3 3.6 81 4-89 54-134 (153)
86 KOG2535 RNA polymerase II elon 96.4 0.0052 1.1E-07 43.6 3.7 50 34-86 497-546 (554)
87 PF04377 ATE_C: Arginine-tRNA- 96.0 0.042 9E-07 33.7 6.1 74 4-84 46-119 (128)
88 COG3916 LasI N-acyl-L-homoseri 96.0 0.19 4.1E-06 33.3 9.3 80 3-86 59-162 (209)
89 PF11039 DUF2824: Protein of u 96.0 0.18 3.9E-06 31.0 9.2 80 5-90 46-125 (151)
90 PF01853 MOZ_SAS: MOZ/SAS fami 96.0 0.043 9.2E-07 35.7 6.2 47 7-56 66-112 (188)
91 COG2401 ABC-type ATPase fused 95.9 0.018 3.9E-07 42.2 4.5 60 23-87 240-308 (593)
92 COG3375 Uncharacterized conser 95.7 0.079 1.7E-06 35.5 6.6 82 4-86 54-136 (266)
93 PF05301 Mec-17: Touch recepto 95.4 0.2 4.4E-06 30.2 7.1 71 5-79 17-97 (120)
94 PRK01305 arginyl-tRNA-protein 95.3 0.16 3.5E-06 34.4 7.3 74 4-84 151-224 (240)
95 PLN03238 probable histone acet 95.2 0.053 1.2E-06 37.5 4.9 48 6-56 140-187 (290)
96 TIGR03019 pepcterm_femAB FemAB 95.0 0.14 3E-06 36.1 6.6 78 4-86 203-280 (330)
97 PF11090 DUF2833: Protein of u 94.8 0.21 4.6E-06 28.3 5.8 29 58-86 55-83 (86)
98 COG3882 FkbH Predicted enzyme 94.7 0.056 1.2E-06 40.1 4.2 50 36-86 498-549 (574)
99 cd04265 DUF619-NAGS-U DUF619 d 94.6 0.09 1.9E-06 30.8 4.1 44 23-72 33-76 (99)
100 KOG2747 Histone acetyltransfer 94.5 0.033 7.1E-07 40.1 2.4 32 23-54 259-290 (396)
101 PHA00432 internal virion prote 94.3 0.2 4.3E-06 31.0 5.3 30 58-87 92-121 (137)
102 PLN03239 histone acetyltransfe 94.1 0.1 2.2E-06 37.1 4.2 47 7-56 199-245 (351)
103 KOG2036 Predicted P-loop ATPas 93.8 0.076 1.6E-06 41.2 3.3 31 24-54 614-644 (1011)
104 PTZ00064 histone acetyltransfe 93.7 0.13 2.8E-06 38.3 4.2 46 7-55 370-415 (552)
105 PF11124 Pho86: Inorganic phos 93.6 0.65 1.4E-05 32.5 7.2 84 3-86 175-270 (304)
106 KOG2696 Histone acetyltransfer 93.5 0.19 4E-06 36.1 4.6 58 8-67 200-258 (403)
107 PF13444 Acetyltransf_5: Acety 93.2 0.13 2.9E-06 29.9 3.2 24 23-46 77-100 (101)
108 PLN00104 MYST -like histone ac 93.1 0.096 2.1E-06 38.5 2.8 45 7-54 292-336 (450)
109 PF02474 NodA: Nodulation prot 92.5 0.45 9.7E-06 30.7 4.9 54 23-81 84-137 (196)
110 PRK14852 hypothetical protein; 91.8 1.6 3.5E-05 35.5 8.2 87 5-95 83-189 (989)
111 TIGR03827 GNAT_ablB putative b 91.6 0.53 1.1E-05 32.2 4.9 49 39-91 20-68 (266)
112 COG2935 Putative arginyl-tRNA: 90.9 1.8 3.9E-05 29.5 6.6 73 5-84 159-231 (253)
113 PF04958 AstA: Arginine N-succ 90.6 1 2.2E-05 32.3 5.5 45 23-67 120-166 (342)
114 PHA00771 head assembly protein 90.3 2.8 6.1E-05 25.7 8.8 67 24-93 62-128 (151)
115 PHA02769 hypothetical protein; 89.8 0.63 1.4E-05 28.0 3.4 44 43-88 95-140 (154)
116 PF12261 T_hemolysin: Thermost 89.7 3.6 7.8E-05 26.7 7.2 76 3-86 41-141 (179)
117 PF04768 DUF619: Protein of un 88.8 3 6.5E-05 26.8 6.3 72 7-84 70-143 (170)
118 KOG2779 N-myristoyl transferas 88.6 0.89 1.9E-05 32.7 4.0 52 3-54 142-197 (421)
119 TIGR03243 arg_catab_AOST argin 87.4 1.5 3.2E-05 31.3 4.6 26 23-48 116-141 (335)
120 COG5027 SAS2 Histone acetyltra 87.4 0.2 4.3E-06 35.7 0.3 43 7-52 248-290 (395)
121 TIGR03244 arg_catab_AstA argin 86.8 1.7 3.7E-05 31.1 4.5 26 23-48 116-141 (336)
122 PRK10456 arginine succinyltran 86.6 1.7 3.7E-05 31.1 4.5 26 23-48 118-143 (344)
123 TIGR03245 arg_AOST_alph argini 86.5 1.8 3.9E-05 30.9 4.6 26 23-48 117-142 (336)
124 COG5630 ARG2 Acetylglutamate s 85.6 3.6 7.8E-05 30.0 5.7 96 6-113 382-480 (495)
125 cd04266 DUF619-NAGS-FABP DUF61 84.5 4.5 9.7E-05 24.1 5.0 45 23-73 38-84 (108)
126 KOG4601 Uncharacterized conser 83.3 2 4.3E-05 29.1 3.4 30 23-52 107-136 (264)
127 PRK00756 acyltransferase NodA; 83.3 4.7 0.0001 26.0 4.9 53 23-80 84-136 (196)
128 KOG3698 Hyaluronoglucosaminida 76.5 4.7 0.0001 31.1 3.9 55 34-89 826-880 (891)
129 PF04339 DUF482: Protein of un 75.5 15 0.00033 26.7 6.2 74 2-87 256-329 (370)
130 COG2898 Uncharacterized conser 74.4 23 0.0005 27.2 7.0 64 1-68 397-460 (538)
131 PF12953 DUF3842: Domain of un 72.1 7.4 0.00016 23.9 3.4 48 34-86 5-52 (131)
132 cd07235 MRD Mitomycin C resist 70.4 5.9 0.00013 23.0 2.7 18 69-86 10-27 (122)
133 PF04816 DUF633: Family of unk 70.2 7.6 0.00017 25.7 3.4 48 40-87 74-122 (205)
134 cd08356 Glo_EDI_BRP_like_17 Th 66.9 6.3 0.00014 22.9 2.3 17 71-87 13-29 (113)
135 cd08353 Glo_EDI_BRP_like_7 Thi 66.8 7.1 0.00015 23.4 2.6 28 59-87 4-31 (142)
136 PF09924 DUF2156: Uncharacteri 63.6 44 0.00095 23.2 6.3 56 5-64 189-244 (299)
137 KOG4387 Ornithine decarboxylas 62.2 33 0.00071 22.4 4.9 60 28-87 103-165 (191)
138 PF08901 DUF1847: Protein of u 58.0 18 0.00039 23.0 3.2 41 46-87 43-87 (157)
139 PRK02983 lysS lysyl-tRNA synth 56.9 96 0.0021 26.2 7.9 61 3-68 427-487 (1094)
140 COG2384 Predicted SAM-dependen 56.2 33 0.00071 23.3 4.4 49 39-87 92-141 (226)
141 cd09012 Glo_EDI_BRP_like_24 Th 55.7 11 0.00023 22.1 2.0 18 69-86 10-27 (124)
142 cd08350 BLMT_like BLMT, a bleo 54.7 12 0.00026 21.7 2.1 20 69-88 12-31 (120)
143 PRK04531 acetylglutamate kinas 54.1 43 0.00094 24.7 5.1 52 23-80 309-360 (398)
144 cd03173 DUF619-like DUF619 dom 52.5 46 0.00099 19.4 4.9 44 23-72 32-75 (98)
145 PF00925 GTP_cyclohydro2: GTP 52.2 32 0.00069 22.0 3.8 44 34-87 123-166 (169)
146 PF02100 ODC_AZ: Ornithine dec 51.3 50 0.0011 19.5 5.1 47 41-87 38-87 (108)
147 COG5092 NMT1 N-myristoyl trans 50.6 42 0.00092 24.2 4.4 49 6-54 143-195 (451)
148 cd08342 HPPD_N_like N-terminal 48.6 32 0.0007 20.6 3.3 26 61-87 3-29 (136)
149 PRK14831 undecaprenyl pyrophos 48.5 27 0.00058 24.0 3.2 34 34-68 41-74 (249)
150 COG2348 Peptidoglycan interpep 47.1 1.2E+02 0.0026 22.7 7.1 58 35-93 78-150 (418)
151 PF00903 Glyoxalase: Glyoxalas 47.0 22 0.00047 20.3 2.4 30 59-89 2-32 (128)
152 cd07267 THT_Oxygenase_N N-term 46.5 23 0.00049 20.3 2.4 26 60-86 5-30 (113)
153 TIGR02990 ectoine_eutA ectoine 46.1 34 0.00074 23.2 3.4 39 48-87 110-151 (239)
154 PF03376 Adeno_E3B: Adenovirus 45.0 12 0.00025 20.1 0.8 14 32-45 52-65 (67)
155 PF01418 HTH_6: Helix-turn-hel 44.8 4.6 0.0001 22.1 -0.8 27 58-84 36-62 (77)
156 PRK14837 undecaprenyl pyrophos 44.5 33 0.00072 23.3 3.1 37 33-70 26-62 (230)
157 TIGR00055 uppS undecaprenyl di 43.7 36 0.00078 23.1 3.2 36 34-70 20-55 (226)
158 PF13380 CoA_binding_2: CoA bi 43.3 70 0.0015 18.9 5.0 43 44-87 66-108 (116)
159 cd07238 Glo_EDI_BRP_like_5 Thi 42.9 26 0.00056 19.9 2.2 15 71-85 12-27 (112)
160 COG3473 Maleate cis-trans isom 42.7 59 0.0013 22.0 3.9 33 55-87 114-149 (238)
161 COG1658 Small primase-like pro 42.2 26 0.00057 21.5 2.1 23 29-51 59-81 (127)
162 PRK14841 undecaprenyl pyrophos 42.2 40 0.00086 23.0 3.2 37 33-70 23-59 (233)
163 cd08344 MhqB_like_N N-terminal 41.7 33 0.00071 19.6 2.5 26 60-86 4-29 (112)
164 KOG3014 Protein involved in es 41.4 36 0.00078 23.5 2.9 48 24-71 183-231 (257)
165 COG3607 Predicted lactoylgluta 41.4 20 0.00042 22.1 1.5 16 71-86 15-30 (133)
166 PRK14842 undecaprenyl pyrophos 39.4 48 0.001 22.7 3.2 36 34-70 29-64 (241)
167 COG0807 RibA GTP cyclohydrolas 39.1 66 0.0014 21.3 3.8 47 33-89 123-169 (193)
168 cd00475 CIS_IPPS Cis (Z)-Isopr 39.0 50 0.0011 22.3 3.3 36 34-70 21-56 (221)
169 PRK14833 undecaprenyl pyrophos 38.9 49 0.0011 22.5 3.3 36 34-70 25-60 (233)
170 PF00571 CBS: CBS domain CBS d 38.4 24 0.00052 17.4 1.4 13 2-14 36-48 (57)
171 PF01255 Prenyltransf: Putativ 38.2 36 0.00079 22.8 2.6 35 34-69 15-49 (223)
172 PRK14829 undecaprenyl pyrophos 38.1 43 0.00094 22.9 2.9 36 33-69 34-69 (243)
173 COG2231 Uncharacterized protei 37.7 50 0.0011 22.2 3.0 40 39-86 121-160 (215)
174 cd08352 Glo_EDI_BRP_like_1 Thi 37.5 50 0.0011 18.7 2.9 28 58-86 3-31 (125)
175 cd08346 PcpA_N_like N-terminal 37.3 54 0.0012 18.6 3.0 27 60-87 3-30 (126)
176 PF14696 Glyoxalase_5: Hydroxy 37.1 20 0.00044 22.3 1.1 30 58-88 9-38 (139)
177 PRK10240 undecaprenyl pyrophos 37.1 46 0.001 22.6 2.9 36 34-70 14-49 (229)
178 PRK14832 undecaprenyl pyrophos 37.1 44 0.00095 23.1 2.8 37 33-70 38-74 (253)
179 PRK14840 undecaprenyl pyrophos 36.8 47 0.001 22.9 2.9 36 34-70 43-78 (250)
180 PF12681 Glyoxalase_2: Glyoxal 36.7 37 0.00079 18.9 2.2 17 71-87 7-24 (108)
181 cd07265 2_3_CTD_N N-terminal d 36.6 46 0.00099 19.2 2.6 27 59-86 5-32 (122)
182 PTZ00349 dehydrodolichyl dipho 36.6 47 0.001 23.8 2.9 36 34-70 40-75 (322)
183 cd07253 Glo_EDI_BRP_like_2 Thi 36.6 57 0.0012 18.5 3.0 29 58-87 3-32 (125)
184 TIGR03645 glyox_marine lactoyl 36.5 46 0.001 20.7 2.7 27 58-85 4-31 (162)
185 PRK14834 undecaprenyl pyrophos 36.2 60 0.0013 22.4 3.4 36 34-70 35-70 (249)
186 PRK14839 undecaprenyl pyrophos 36.0 51 0.0011 22.6 3.0 36 34-70 30-65 (239)
187 KOG3307 Molybdopterin converti 35.8 1.1E+02 0.0023 18.9 4.1 61 11-89 36-96 (150)
188 cd01274 AIDA-1b AIDA-1b Phosph 35.5 1.1E+02 0.0023 18.7 4.3 42 25-67 7-48 (127)
189 cd07255 Glo_EDI_BRP_like_12 Th 35.3 52 0.0011 18.9 2.7 28 59-87 3-31 (125)
190 TIGR00505 ribA GTP cyclohydrol 35.2 1.3E+02 0.0027 19.7 4.7 45 34-88 122-166 (191)
191 cd08358 Glo_EDI_BRP_like_21 Th 35.2 52 0.0011 20.0 2.7 18 69-86 12-30 (127)
192 PTZ00129 40S ribosomal protein 34.2 1.2E+02 0.0027 19.2 5.9 44 42-86 74-128 (149)
193 COG0346 GloA Lactoylglutathion 34.0 60 0.0013 18.2 2.8 29 59-88 3-32 (138)
194 PF05865 Cypo_polyhedrin: Cypo 33.9 1.1E+02 0.0025 19.7 4.1 43 4-47 155-199 (248)
195 PRK14835 undecaprenyl pyrophos 33.3 52 0.0011 23.0 2.7 36 34-70 62-97 (275)
196 PRK14827 undecaprenyl pyrophos 32.9 54 0.0012 23.2 2.8 35 34-69 88-122 (296)
197 PF12652 CotJB: CotJB protein; 32.9 37 0.00081 18.9 1.6 38 44-82 3-40 (78)
198 PF02836 Glyco_hydro_2_C: Glyc 32.7 1.7E+02 0.0037 20.2 8.8 63 24-87 14-78 (298)
199 PF09288 UBA_3: Fungal ubiquit 32.4 69 0.0015 16.6 2.5 13 71-83 24-36 (55)
200 cd07256 HPCD_C_class_II C-term 31.5 60 0.0013 20.2 2.7 26 59-85 4-30 (161)
201 PF06072 Herpes_US9: Alphaherp 30.8 29 0.00063 18.3 0.9 21 66-86 4-24 (60)
202 TIGR03628 arch_S11P archaeal r 30.1 1.3E+02 0.0028 18.1 5.6 43 43-86 49-102 (114)
203 cd07249 MMCE Methylmalonyl-CoA 29.9 64 0.0014 18.4 2.5 26 61-87 3-29 (128)
204 PRK00393 ribA GTP cyclohydrola 29.8 1.7E+02 0.0036 19.3 4.7 45 34-88 125-169 (197)
205 cd08362 BphC5-RrK37_N_like N-t 29.8 65 0.0014 18.3 2.5 27 59-86 4-31 (120)
206 TIGR00068 glyox_I lactoylgluta 29.6 62 0.0013 19.7 2.5 27 58-85 17-44 (150)
207 PRK14838 undecaprenyl pyrophos 29.6 74 0.0016 21.8 3.0 36 34-70 31-66 (242)
208 PRK14828 undecaprenyl pyrophos 29.5 76 0.0016 21.9 3.0 35 34-69 47-82 (256)
209 cd07252 BphC1-RGP6_N_like N-te 29.1 69 0.0015 18.5 2.5 25 61-86 5-30 (120)
210 cd07240 ED_TypeI_classII_N N-t 29.1 78 0.0017 17.8 2.8 17 71-87 14-31 (117)
211 cd07266 HPCD_N_class_II N-term 29.1 70 0.0015 18.3 2.6 27 59-86 5-32 (121)
212 cd01027 TOPRIM_RNase_M5_like T 29.0 44 0.00094 18.6 1.5 25 26-50 46-70 (81)
213 cd07243 2_3_CTD_C C-terminal d 28.8 72 0.0016 19.4 2.7 27 59-86 7-34 (143)
214 cd08349 BLMA_like Bleomycin bi 28.6 54 0.0012 18.3 2.0 17 71-87 10-27 (112)
215 PRK14830 undecaprenyl pyrophos 28.6 89 0.0019 21.5 3.2 34 36-70 45-78 (251)
216 PF04015 DUF362: Domain of unk 28.5 1.7E+02 0.0037 19.0 4.5 48 39-87 18-67 (206)
217 PRK14019 bifunctional 3,4-dihy 28.5 1.2E+02 0.0027 22.1 4.1 43 34-87 319-361 (367)
218 PRK13886 conjugal transfer pro 28.2 1.6E+02 0.0036 20.1 4.4 39 38-76 11-49 (241)
219 cd07241 Glo_EDI_BRP_like_3 Thi 28.0 79 0.0017 17.9 2.7 15 71-85 13-28 (125)
220 PRK09607 rps11p 30S ribosomal 27.6 1.6E+02 0.0034 18.3 5.6 45 41-86 53-109 (132)
221 PRK11478 putative lyase; Provi 27.6 90 0.0019 18.0 2.9 27 59-86 7-34 (129)
222 cd07242 Glo_EDI_BRP_like_6 Thi 27.5 1.1E+02 0.0024 17.6 3.2 26 60-86 3-32 (128)
223 PRK12303 tumor necrosis factor 27.3 1.5E+02 0.0032 18.3 3.7 39 57-95 122-160 (192)
224 cd08364 FosX FosX, a fosfomyci 27.2 1.1E+02 0.0023 18.1 3.2 28 58-86 4-32 (131)
225 PRK09318 bifunctional 3,4-dihy 27.1 1.7E+02 0.0038 21.6 4.6 47 33-89 310-356 (387)
226 cd08348 BphC2-C3-RGP6_C_like T 27.0 97 0.0021 18.1 3.0 15 72-86 14-29 (134)
227 COG0623 FabI Enoyl-[acyl-carri 26.6 1.5E+02 0.0032 20.6 3.9 44 27-70 146-189 (259)
228 cd07262 Glo_EDI_BRP_like_19 Th 26.3 1.1E+02 0.0023 17.5 3.0 16 71-86 12-31 (123)
229 PF01526 DDE_Tnp_Tn3: Tn3 tran 26.1 1.3E+02 0.0028 22.2 3.8 61 42-103 153-213 (388)
230 cd08347 PcpA_C_like C-terminal 25.5 87 0.0019 19.5 2.6 28 59-87 2-30 (157)
231 PRK10291 glyoxalase I; Provisi 25.3 69 0.0015 18.7 2.1 17 70-86 7-24 (129)
232 smart00116 CBS Domain in cysta 25.2 59 0.0013 14.3 1.5 10 4-13 31-40 (49)
233 PRK11337 DNA-binding transcrip 25.1 24 0.00051 24.4 -0.0 30 57-86 47-76 (292)
234 PF11009 DUF2847: Protein of u 24.9 1.6E+02 0.0035 17.4 4.3 53 34-86 26-79 (105)
235 PF13592 HTH_33: Winged helix- 24.8 1.1E+02 0.0024 15.6 3.4 18 69-86 23-40 (60)
236 PRK09319 bifunctional 3,4-dihy 24.8 1.9E+02 0.0041 22.6 4.5 46 34-89 334-379 (555)
237 cd07263 Glo_EDI_BRP_like_16 Th 24.5 67 0.0015 17.9 1.9 18 70-87 9-27 (119)
238 cd07237 BphC1-RGP6_C_like C-te 24.5 1.4E+02 0.003 18.3 3.4 29 57-86 8-37 (154)
239 cd01212 JIP JNK-interacting pr 24.2 1.9E+02 0.0042 18.1 5.2 29 24-53 7-35 (148)
240 COG0022 AcoB Pyruvate/2-oxoglu 23.7 1E+02 0.0023 22.1 2.9 32 29-60 255-286 (324)
241 COG0826 Collagenase and relate 23.6 2.7E+02 0.0059 20.2 5.0 26 61-86 117-142 (347)
242 KOG1472 Histone acetyltransfer 23.5 12 0.00026 29.7 -1.8 73 8-85 431-503 (720)
243 PRK11302 DNA-binding transcrip 23.4 26 0.00057 23.9 -0.0 30 57-86 35-64 (284)
244 PLN02831 Bifunctional GTP cycl 23.2 2E+02 0.0043 21.8 4.4 46 33-88 363-408 (450)
245 PF01136 Peptidase_U32: Peptid 23.2 2E+02 0.0044 18.9 4.2 23 64-86 43-65 (233)
246 TIGR02913 HAF_rpt probable ext 23.1 96 0.0021 14.7 1.9 12 2-13 4-15 (39)
247 PRK15482 transcriptional regul 22.9 27 0.00058 24.1 -0.1 29 58-86 36-64 (285)
248 COG3543 Uncharacterized conser 22.8 1.6E+02 0.0036 18.2 3.3 38 33-70 13-50 (135)
249 PF08758 Cadherin_pro: Cadheri 22.8 82 0.0018 18.0 1.9 30 4-37 20-49 (90)
250 PF15538 Toxin_61: Putative to 22.1 73 0.0016 20.3 1.7 36 64-99 19-54 (157)
251 cd07264 Glo_EDI_BRP_like_15 Th 22.0 83 0.0018 18.0 1.9 17 70-86 11-28 (125)
252 PRK12485 bifunctional 3,4-dihy 21.8 1.8E+02 0.0038 21.4 3.8 29 56-87 336-364 (369)
253 PRK04017 hypothetical protein; 21.7 1E+02 0.0022 19.1 2.2 24 28-51 68-91 (132)
254 KOG1602 Cis-prenyltransferase 21.6 2.1E+02 0.0045 20.1 3.9 35 34-69 57-91 (271)
255 COG2266 GTP:adenosylcobinamide 21.5 2.5E+02 0.0054 18.4 4.4 43 42-86 26-68 (177)
256 cd04883 ACT_AcuB C-terminal AC 21.4 1.4E+02 0.0029 15.4 3.6 26 61-86 44-70 (72)
257 cd07254 Glo_EDI_BRP_like_20 Th 21.4 1.4E+02 0.0031 16.9 2.9 15 71-85 13-28 (120)
258 PF04393 DUF535: Protein of un 21.3 3E+02 0.0065 19.3 10.0 73 4-77 134-219 (288)
259 cd06587 Glo_EDI_BRP_like This 21.3 95 0.0021 16.6 2.1 20 69-88 8-28 (112)
260 cd09013 BphC-JF8_N_like N-term 21.2 1.2E+02 0.0027 17.3 2.6 27 59-86 7-34 (121)
261 COG2994 HlyC ACP:hemolysin acy 21.1 98 0.0021 19.5 2.1 64 3-74 59-140 (148)
262 PRK08815 GTP cyclohydrolase; P 21.0 2.5E+02 0.0055 20.7 4.5 47 33-89 295-341 (375)
263 PRK14836 undecaprenyl pyrophos 20.9 97 0.0021 21.4 2.3 35 34-69 35-69 (253)
264 PF00411 Ribosomal_S11: Riboso 20.8 2E+02 0.0043 17.0 5.9 42 44-86 47-91 (110)
265 cd08357 Glo_EDI_BRP_like_18 Th 20.7 95 0.0021 17.6 2.0 17 70-86 10-27 (125)
266 cd01215 Dab Disabled (Dab) Pho 20.7 2.3E+02 0.005 17.7 4.6 44 25-69 18-62 (139)
267 PRK03661 hypothetical protein; 20.6 2.4E+02 0.0052 18.0 3.9 14 5-18 113-126 (164)
268 cd07246 Glo_EDI_BRP_like_8 Thi 20.6 1.5E+02 0.0033 16.6 2.9 18 69-86 11-29 (122)
269 PF06645 SPC12: Microsomal sig 20.5 66 0.0014 17.7 1.2 18 35-52 2-19 (76)
270 PLN02683 pyruvate dehydrogenas 20.5 3E+02 0.0066 20.0 4.8 53 30-82 284-336 (356)
271 PRK06724 hypothetical protein; 20.3 1.6E+02 0.0034 17.6 2.9 27 58-85 7-37 (128)
272 KOG0524 Pyruvate dehydrogenase 20.3 1.4E+02 0.0031 21.2 2.9 34 28-61 290-323 (359)
273 cd00595 NDPk Nucleoside diphos 20.2 75 0.0016 19.3 1.5 48 29-80 4-51 (133)
274 cd09011 Glo_EDI_BRP_like_23 Th 20.1 1.4E+02 0.0029 17.1 2.6 17 69-85 12-29 (120)
275 PF02219 MTHFR: Methylenetetra 20.0 3.1E+02 0.0068 19.0 5.4 41 40-81 247-287 (287)
No 1
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.80 E-value=1.4e-18 Score=98.28 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=72.9
Q ss_pred CCCCcEEEEEEEEeecCCC--CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhc
Q 033454 3 SSFAAMVGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 80 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~--~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~ 80 (119)
+.+|++||++.+....... ...++|..++++|+|||+|+|+.|++.+++++++ .++..+.+.+..+|..+++||+|+
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARK-RGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHH-TTESEEEEEEETTGHHHHHHHHHT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHh-cCccEEEEEEeCCCHHHHHHHHHc
Confidence 5789999999988776542 3789999999999999999999999999999974 799999999999999999999999
Q ss_pred CCe
Q 033454 81 GFE 83 (119)
Q Consensus 81 Gf~ 83 (119)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 2
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.78 E-value=1.6e-18 Score=109.45 Aligned_cols=109 Identities=22% Similarity=0.165 Sum_probs=84.4
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||++.+...... .....+..++++|++||+|+|++|++.++++++ ..+..++.+.|..+|.+|+++|+|+||+
T Consensus 47 ~~~~ivG~~~~~~~~~~-~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~-~~~~~~i~~~v~~~N~~a~~ly~k~G~~ 124 (157)
T TIGR02406 47 EGGEIVGFVSGYLRPDR-PDVLFVWQVAVDPRARGKGLARRLLEALLERVA-CERVRHLETTITPDNQASRALFKALARR 124 (157)
T ss_pred CCCeEEEEEEEEecCCC-CCeEEEEEEEEChHhccCcHHHHHHHHHHHHHH-hCCCCEEEEEEcCCCHHHHHHHHHhCcc
Confidence 46799999875543332 256788899999999999999999999999997 5588999999999999999999999999
Q ss_pred eechhhhhhhhccccccchhHHHHHHHHHhh
Q 033454 84 DISYSEIFKEVTLELPVENAKREELLVLTAN 114 (119)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (119)
.......-+-...+.+-.+.++++|+.++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (157)
T TIGR02406 125 RGVHLIEEPFFDGELFPGGAHDDEWLLRIGP 155 (157)
T ss_pred cCCCeEeecccccccCccCCCChhHeeeccc
Confidence 8663222222333344567778888777653
No 3
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.76 E-value=1.2e-17 Score=107.23 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=74.6
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||++++...++.. +.+++++++ +|+|||+|+|+++++.+++++++..+++++.+.+.+.|.+|+++++|+||+
T Consensus 74 ~~~~~iG~~~l~~~~~~~-~~~~ig~~i-~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~ 151 (179)
T PRK10151 74 KEDELIGVLSFNRIEPLN-KTAYIGYWL-DESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFT 151 (179)
T ss_pred ECCEEEEEEEEEeeccCC-CceEEEEEE-ChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCE
Confidence 478999999987776554 678999876 699999999999999999999977899999999999999999999999999
Q ss_pred eechh
Q 033454 84 DISYS 88 (119)
Q Consensus 84 ~~~~~ 88 (119)
.++..
T Consensus 152 ~~g~~ 156 (179)
T PRK10151 152 LEGCL 156 (179)
T ss_pred EEeEe
Confidence 99853
No 4
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.75 E-value=1.6e-17 Score=107.88 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=72.1
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
..+|++||++.+...++ ..++++.+.++|++||+|+|+++++.++++++ ..|+.+|.+.|..+|.+|++||+|+||
T Consensus 105 ~~~g~iiG~i~l~~~~~---~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~-~~g~~~I~l~v~~~N~~A~~~Y~klGF 180 (191)
T TIGR02382 105 DASGDPRGYVTLRELND---TDARIGLLAVFPGAQSRGIGAELMQTALNWCY-ARGLTRLRVATQMGNTAALRLYIRSGA 180 (191)
T ss_pred ccCCeEEEEEEEEecCC---CceEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeCCCCHHHHHHHHHcCC
Confidence 45789999998765543 34789999889999999999999999999997 679999999999999999999999999
Q ss_pred eeech
Q 033454 83 EDISY 87 (119)
Q Consensus 83 ~~~~~ 87 (119)
+.++.
T Consensus 181 ~~~~~ 185 (191)
T TIGR02382 181 NIEST 185 (191)
T ss_pred ccccc
Confidence 98874
No 5
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.74 E-value=3.8e-17 Score=106.13 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=74.0
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||.+++...+......+++++.+ .|+|||+|+|+++++.++++++..+++++|.+.|.+.|.+|+++|+|+||+
T Consensus 84 ~~~~~iG~i~l~~~~~~~~~~~eig~~i-~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~ 162 (194)
T PRK10809 84 DEKEIIGVANFSNVVRGSFHACYLGYSL-GQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFE 162 (194)
T ss_pred CCCeEEEEEEEEeecCCCeeeEEEEEEE-CHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCc
Confidence 4679999999887664333568899876 599999999999999999999977899999999999999999999999999
Q ss_pred eechh
Q 033454 84 DISYS 88 (119)
Q Consensus 84 ~~~~~ 88 (119)
.++..
T Consensus 163 ~~g~~ 167 (194)
T PRK10809 163 KEGYA 167 (194)
T ss_pred EEeee
Confidence 98853
No 6
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.73 E-value=4.5e-17 Score=102.08 Aligned_cols=83 Identities=29% Similarity=0.487 Sum_probs=73.2
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||++.+...++.. +.++++.++. |++|++|+|+.|+..++++|++..++++|++.+.+.|..|++||+++||+
T Consensus 58 ~~g~iiG~~~~~~~~~~~-~~~~~~~~v~-~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYN-HTAELSIYVS-PDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEE
T ss_pred cCCcEEEEEEEEeeeccC-CEEEEeeEEC-hhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCE
Confidence 489999999988777744 8899997777 99999999999999999999778999999999999999999999999999
Q ss_pred eechh
Q 033454 84 DISYS 88 (119)
Q Consensus 84 ~~~~~ 88 (119)
.++..
T Consensus 136 ~~g~~ 140 (155)
T PF13420_consen 136 EEGEL 140 (155)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99854
No 7
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.72 E-value=2.9e-17 Score=101.70 Aligned_cols=84 Identities=13% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCCCCcEEEEEEEEeecCC--CCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHh
Q 033454 2 VSSFAAMVGDVNIYMNDLD--NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQK 79 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~--~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k 79 (119)
+..+|++||++.+...... ....++|..++++|++||+|+|+.|+..++++|+ ..+++.+.+.+..+|..|++||++
T Consensus 52 ~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~-~~~~~~i~l~~~~~n~~a~~fY~~ 130 (144)
T PRK10146 52 ALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEAR-QAGAEMTELSTNVKRHDAHRFYLR 130 (144)
T ss_pred EEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHH-HcCCcEEEEecCCCchHHHHHHHH
Confidence 4567899999997654221 1124678889999999999999999999999997 569999999999999999999999
Q ss_pred cCCeeec
Q 033454 80 LGFEDIS 86 (119)
Q Consensus 80 ~Gf~~~~ 86 (119)
+||+..+
T Consensus 131 ~Gf~~~~ 137 (144)
T PRK10146 131 EGYEQSH 137 (144)
T ss_pred cCCchhh
Confidence 9998764
No 8
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.72 E-value=7.5e-17 Score=101.52 Aligned_cols=85 Identities=15% Similarity=0.260 Sum_probs=71.1
Q ss_pred CCCCcEEEEEEEEeecCC-CCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 3 SSFAAMVGDVNIYMNDLD-NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~-~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
..+|++||++++...... ..+.++++. .++|+|||+|+|+++++.+++++++..++.++.+.+.++|.+|++||+|+|
T Consensus 57 ~~~~~~vG~~~~~~~~~~~~~~~~~~~~-~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~G 135 (162)
T PRK10140 57 CIDGDVVGHLTIDVQQRPRRSHVADFGI-CVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYG 135 (162)
T ss_pred EECCEEEEEEEEecccccccceEEEEEE-EECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCC
Confidence 457899999998765322 224566764 556999999999999999999998657999999999999999999999999
Q ss_pred Ceeechh
Q 033454 82 FEDISYS 88 (119)
Q Consensus 82 f~~~~~~ 88 (119)
|+..+..
T Consensus 136 F~~~g~~ 142 (162)
T PRK10140 136 FEIEGTG 142 (162)
T ss_pred CEEEeec
Confidence 9999853
No 9
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.71 E-value=2.7e-16 Score=96.93 Aligned_cols=78 Identities=36% Similarity=0.615 Sum_probs=68.0
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.++++||++.+...+... +.+++++.+. |++||+|+|++++..+++++++..++.++.+.+.++|.+|+++++|+||+
T Consensus 65 ~~~~~iG~i~~~~~~~~~-~~~eig~~i~-~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 65 DDGEIIGFIGLYNIDKNN-NWAEIGYWIG-PDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTTEEEEEEEEEEEETTT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred cCCceEEEeeeeecccCC-Cccccccchh-HHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 346899999986665443 8899998776 89999999999999999999888999999999999999999999999996
No 10
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.70 E-value=1.7e-16 Score=102.48 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=73.0
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
..+|++||++.+...+... ..+++++ +++|+|||+|+|+++++.+++++++..++++|.+.+...|.+|+++|+|+||
T Consensus 63 ~~~g~~iG~~~~~~~~~~~-~~~~~~~-~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF 140 (186)
T PRK15130 63 ECDGEKAGLVELVEINHVH-RRAEFQI-IISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGF 140 (186)
T ss_pred EECCEEEEEEEEEeecCCC-CeEEEEE-EECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCC
Confidence 3578999999987766544 5677875 5569999999999999999999998889999999999999999999999999
Q ss_pred eeech
Q 033454 83 EDISY 87 (119)
Q Consensus 83 ~~~~~ 87 (119)
+.++.
T Consensus 141 ~~~~~ 145 (186)
T PRK15130 141 EVEGE 145 (186)
T ss_pred EEEEE
Confidence 99875
No 11
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.70 E-value=2.8e-16 Score=102.22 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=70.8
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||++.+...+. ..++++.++++|+|||+|+|++|+..++++++ +.+++++.+.+..+|.+|++||+|+||+
T Consensus 109 ~~g~~vG~~~l~~~~~---~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~-~~g~~~i~l~v~~~N~~a~~~yek~Gf~ 184 (194)
T PRK10975 109 ASGQIQGFVTLRELND---TDARIGLLAVFPGAQGRGIGARLMQAALNWCQ-ARGLTRLRVATQMGNLAALRLYIRSGAN 184 (194)
T ss_pred CCCCEEEEEEEEecCC---CceEEEEEEEChhhcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeCCCcHHHHHHHHHCCCe
Confidence 4678999998765432 45789988889999999999999999999997 6799999999999999999999999999
Q ss_pred eech
Q 033454 84 DISY 87 (119)
Q Consensus 84 ~~~~ 87 (119)
.++.
T Consensus 185 ~~~~ 188 (194)
T PRK10975 185 IEST 188 (194)
T ss_pred EeEE
Confidence 8874
No 12
>PRK03624 putative acetyltransferase; Provisional
Probab=99.70 E-value=1.6e-16 Score=97.42 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=69.1
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
+..+|++||++.+.... ....+..+.++|+|||+|+|+++++.++++++ ..+++.+.+.+.+.|..|.++|+|+|
T Consensus 50 ~~~~~~~vG~~~~~~~~----~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~-~~~~~~~~~~~~~~N~~~~~~y~k~G 124 (140)
T PRK03624 50 AEVGGEVVGTVMGGYDG----HRGWAYYLAVHPDFRGRGIGRALVARLEKKLI-ARGCPKINLQVREDNDAVLGFYEALG 124 (140)
T ss_pred EEcCCcEEEEEEeeccC----CCceEEEEEECHHHhCCCHHHHHHHHHHHHHH-HCCCCEEEEEEecCcHHHHHHHHHcC
Confidence 34678999999764321 34567778889999999999999999999997 56999999999999999999999999
Q ss_pred Ceeech
Q 033454 82 FEDISY 87 (119)
Q Consensus 82 f~~~~~ 87 (119)
|+..+.
T Consensus 125 F~~~~~ 130 (140)
T PRK03624 125 YEEQDR 130 (140)
T ss_pred CccccE
Confidence 998763
No 13
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.69 E-value=3.1e-16 Score=95.21 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=71.0
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
..+|++||++.+.... ....+..++++|+|||+|+|++|++.++++++ ..+++.+.+.+.+.|..|++||+++||
T Consensus 37 ~~~~~~vg~~~~~~~~----~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~-~~~~~~i~~~~~~~n~~~~~~y~~~Gf 111 (131)
T TIGR01575 37 RIGGKVVGYAGVQIVL----DEAHILNIAVKPEYQGQGIGRALLRELIDEAK-GRGVNEIFLEVRVSNIAAQALYKKLGF 111 (131)
T ss_pred ecCCeEEEEEEEEecC----CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCeEEEEEecccHHHHHHHHHcCC
Confidence 3578999999865433 34678888999999999999999999999997 568999999999999999999999999
Q ss_pred eeechhh
Q 033454 83 EDISYSE 89 (119)
Q Consensus 83 ~~~~~~~ 89 (119)
+.++...
T Consensus 112 ~~~~~~~ 118 (131)
T TIGR01575 112 NEIAIRR 118 (131)
T ss_pred Ccccccc
Confidence 9988544
No 14
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.68 E-value=3.8e-16 Score=97.89 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=72.6
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
..+|++||++++...+... +..+++.+ +.|++| +|+|++++..+++++++..+++++.+.+...|.+|++||+|+||
T Consensus 57 ~~~g~~vG~~~~~~~~~~~-~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf 133 (156)
T TIGR03585 57 CQESRPIGVISFTDINLVH-KSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGF 133 (156)
T ss_pred EECCEEEEEEEEEecChhh-CeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCC
Confidence 4579999999987665433 56788876 679999 99999999999999997789999999999999999999999999
Q ss_pred eeechh
Q 033454 83 EDISYS 88 (119)
Q Consensus 83 ~~~~~~ 88 (119)
+.++..
T Consensus 134 ~~~g~~ 139 (156)
T TIGR03585 134 EREGVF 139 (156)
T ss_pred eEeeee
Confidence 999843
No 15
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=4.7e-16 Score=99.34 Aligned_cols=84 Identities=31% Similarity=0.502 Sum_probs=75.3
Q ss_pred CCcEEEEEEEEeecC-CCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 5 FAAMVGDVNIYMNDL-DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~-~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
++++||.+.+...+. .....+++++.+. |+++|+|+|++++..+++++++..+++++.+.+.+.|.+|+++++|+||+
T Consensus 76 ~~~~iG~~~~~~~~~~~~~~~~~ig~~l~-~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~ 154 (187)
T COG1670 76 DGELIGVIGLSDIDRAANGDLAEIGYWLD-PEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFR 154 (187)
T ss_pred CCeEEEEEEEEEeccccccceEEEEEEEC-hHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCCh
Confidence 358999999887773 3347899999885 99999999999999999999988999999999999999999999999999
Q ss_pred eechhh
Q 033454 84 DISYSE 89 (119)
Q Consensus 84 ~~~~~~ 89 (119)
.++...
T Consensus 155 ~eg~~~ 160 (187)
T COG1670 155 LEGELR 160 (187)
T ss_pred hhhhhh
Confidence 998543
No 16
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.68 E-value=7.2e-16 Score=95.65 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=71.2
Q ss_pred EEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 8 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 8 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
.||.+........+...++|..++|+++|||+|||+.|++.+++.++ ..|+..+.+++..+|.+|.++|+++||+..++
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~-~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMR-SRGYSEVVLETEVTNLSALRLYESLGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHH-HCCCcEEEEeccccchHHHHHHHhcCceEecc
Confidence 68888755544443467999999999999999999999999999997 66999999999999999999999999999876
Q ss_pred hh
Q 033454 88 SE 89 (119)
Q Consensus 88 ~~ 89 (119)
..
T Consensus 147 ~~ 148 (165)
T KOG3139|consen 147 LF 148 (165)
T ss_pred ee
Confidence 43
No 17
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.68 E-value=5e-16 Score=97.25 Aligned_cols=88 Identities=25% Similarity=0.421 Sum_probs=71.9
Q ss_pred CCCCCcEEEEEEEEeecCC---CCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHH
Q 033454 2 VSSFAAMVGDVNIYMNDLD---NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ 78 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~---~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~ 78 (119)
+..+|+++|++.+....+. ......++.+++++++||+|+|+.+++.+++++++..+.++|.+.+.++|.+|+++|+
T Consensus 53 ~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~ 132 (152)
T PF13523_consen 53 AEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYE 132 (152)
T ss_dssp EEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHH
T ss_pred EEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHH
Confidence 4568999999987653322 2356779999999999999999999999999998666899999999999999999999
Q ss_pred hcCCeeechhh
Q 033454 79 KLGFEDISYSE 89 (119)
Q Consensus 79 k~Gf~~~~~~~ 89 (119)
|+||+.+++..
T Consensus 133 k~GF~~~g~~~ 143 (152)
T PF13523_consen 133 KAGFRKVGEFE 143 (152)
T ss_dssp HTT-EEEEEEE
T ss_pred HcCCEEeeEEE
Confidence 99999999654
No 18
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.65 E-value=1.6e-15 Score=94.35 Aligned_cols=81 Identities=16% Similarity=0.268 Sum_probs=69.5
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
..+|++||++.+.... +...+..++++|++||+|+|+.+++.+++.++ ..+++.+.+.+...|.+|.++|+|+||
T Consensus 46 ~~~~~~vG~~~~~~~~----~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~-~~~~~~~~~~~~~~N~~a~~~y~k~Gf 120 (146)
T PRK09491 46 TVNGQMAAFAITQVVL----DEATLFNIAVDPDYQRQGLGRALLEHLIDELE-KRGVATLWLEVRASNAAAIALYESLGF 120 (146)
T ss_pred EECCeEEEEEEEEeec----CceEEEEEEECHHHccCCHHHHHHHHHHHHHH-HCCCcEEEEEEccCCHHHHHHHHHcCC
Confidence 3578999999865433 34567777889999999999999999999986 679999999999999999999999999
Q ss_pred eeechh
Q 033454 83 EDISYS 88 (119)
Q Consensus 83 ~~~~~~ 88 (119)
+..+..
T Consensus 121 ~~~~~~ 126 (146)
T PRK09491 121 NEVTIR 126 (146)
T ss_pred EEeeee
Confidence 987743
No 19
>PTZ00330 acetyltransferase; Provisional
Probab=99.65 E-value=2.5e-15 Score=93.26 Aligned_cols=80 Identities=19% Similarity=0.328 Sum_probs=65.4
Q ss_pred CCCCcEEEEEEEEeecCC---CCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHh
Q 033454 3 SSFAAMVGDVNIYMNDLD---NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQK 79 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~---~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k 79 (119)
..+|++||++.+...... ....+++..++++|+|||+|+|++|++.++++++ ..++.++.+.+ |.+|.+||+|
T Consensus 58 ~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~-~~~~~~l~l~~---n~~a~~~y~k 133 (147)
T PTZ00330 58 SPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIAR-SSGCYKVILDC---TEDMVAFYKK 133 (147)
T ss_pred eCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEec---ChHHHHHHHH
Confidence 467899999987644321 1134688889999999999999999999999997 56888876654 8999999999
Q ss_pred cCCeeec
Q 033454 80 LGFEDIS 86 (119)
Q Consensus 80 ~Gf~~~~ 86 (119)
+||+...
T Consensus 134 ~GF~~~~ 140 (147)
T PTZ00330 134 LGFRACE 140 (147)
T ss_pred CCCEEec
Confidence 9999876
No 20
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.64 E-value=3.1e-15 Score=84.17 Aligned_cols=72 Identities=24% Similarity=0.478 Sum_probs=58.9
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
+.+++++||++.+...+ +...|..++++|++||+|+|++|++.+.+.+. . ..+.+.+ |+.+..||+++|
T Consensus 8 ~~~~~~ivG~~~~~~~~----~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~-~---~~i~l~~---~~~~~~fY~~~G 76 (79)
T PF13508_consen 8 AEDDGEIVGFIRLWPNE----DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAK-S---KKIFLFT---NPAAIKFYEKLG 76 (79)
T ss_dssp EEETTEEEEEEEEEETT----TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT-C---SEEEEEE---EHHHHHHHHHTT
T ss_pred EEECCEEEEEEEEEEcC----CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcC-C---CcEEEEE---cHHHHHHHHHCc
Confidence 46789999999984444 57899999999999999999999999988773 2 4555554 678999999999
Q ss_pred Cee
Q 033454 82 FED 84 (119)
Q Consensus 82 f~~ 84 (119)
|++
T Consensus 77 F~~ 79 (79)
T PF13508_consen 77 FEE 79 (79)
T ss_dssp EEE
T ss_pred CCC
Confidence 984
No 21
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.63 E-value=1.5e-15 Score=103.34 Aligned_cols=83 Identities=25% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
+..+|++||++.+.. +... ..++|..++++|+|||+|+|++|++.++++++ ..+++.+++.+...|.+|+++|+|+|
T Consensus 163 ~~~~g~iVG~~~~~~-~~~~-~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~-~~g~~~l~~~~~~~n~~a~~ly~k~G 239 (266)
T TIGR03827 163 VEDGGKIIALASAEM-DPEN-GNAEMTDFATLPEYRGKGLAKILLAAMEKEMK-EKGIRTAYTIARASSYGMNITFARLG 239 (266)
T ss_pred EEECCEEEEEEEEec-CCCC-CcEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCcEEEeehhhcchhHHHHHHHcC
Confidence 346789999998532 2222 56899999999999999999999999999997 67999999999999999999999999
Q ss_pred Ceeech
Q 033454 82 FEDISY 87 (119)
Q Consensus 82 f~~~~~ 87 (119)
|+.++.
T Consensus 240 F~~~G~ 245 (266)
T TIGR03827 240 YAYGGT 245 (266)
T ss_pred CccccE
Confidence 999984
No 22
>PRK10314 putative acyltransferase; Provisional
Probab=99.62 E-value=4.2e-15 Score=93.58 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=65.5
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||++.+...+... ..++|+.++|+|+|||+|+|++|++.+++++....+...+.+.+ +..+..||+|+||+
T Consensus 55 ~~~~~vg~~r~~~~~~~~-~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a---~~~a~~fY~k~GF~ 130 (153)
T PRK10314 55 KNDELVAYARILKSDDDL-EPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGA---QAHLQNFYQSFGFI 130 (153)
T ss_pred ECCEEEEEEEEecCCCCC-CCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEeh---HHHHHHHHHHCCCE
Confidence 478899999876543222 45899999999999999999999999999987555677777665 56788999999999
Q ss_pred eech
Q 033454 84 DISY 87 (119)
Q Consensus 84 ~~~~ 87 (119)
.++.
T Consensus 131 ~~g~ 134 (153)
T PRK10314 131 PVTE 134 (153)
T ss_pred ECCC
Confidence 9874
No 23
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.61 E-value=1e-14 Score=91.04 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=64.4
Q ss_pred CCcEEEEEEEEeecC---CCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 5 FAAMVGDVNIYMNDL---DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~---~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
+|++||++.+..... .....+.+..++++|+|||+|+|++|++.++++|+ ..+++++.+.+.++|. +||+|+|
T Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~-~~g~~~i~l~~~~~N~---~~y~k~G 138 (150)
T PLN02706 63 SGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHAR-SAGCYKVILDCSEENK---AFYEKCG 138 (150)
T ss_pred CCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeccccH---HHHHHCc
Confidence 589999998753211 11134567778899999999999999999999997 6799999999999995 5999999
Q ss_pred Ceeec
Q 033454 82 FEDIS 86 (119)
Q Consensus 82 f~~~~ 86 (119)
|+.++
T Consensus 139 F~~~g 143 (150)
T PLN02706 139 YVRKE 143 (150)
T ss_pred CEEeh
Confidence 99876
No 24
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.58 E-value=4.1e-14 Score=90.26 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=68.9
Q ss_pred cEEEEEEEEeecCCC--CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCc-cEEEEeecCCChhHHHHHHhcCCe
Q 033454 7 AMVGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGI-HVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 7 ~~vG~~~~~~~~~~~--~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~-~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
+++|++......... ...++|..+.|+|+|||+|+|++|++.+++.+. ..+. ..+.++|..+|.+|+++|+|+||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~-~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLR-ERGLADKIVLEVRESNEAAIGLYRKLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHH-hcCCCceEEEEEecCChHHHHHHHHcCCE
Confidence 589999865333211 126899999999999999999999999999986 5565 899999999999999999999999
Q ss_pred eechhh
Q 033454 84 DISYSE 89 (119)
Q Consensus 84 ~~~~~~ 89 (119)
..+...
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987544
No 25
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.57 E-value=4.5e-14 Score=96.88 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=67.7
Q ss_pred CCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCee
Q 033454 5 FAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 84 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~ 84 (119)
+|++||++.+.... ......++..+.++|+|||+|+|+.|+..++++++ ..++..+.+.+...|..|++||+|+||+.
T Consensus 208 ~~~~vG~~~~~~~~-~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~-~~g~~~v~l~v~~~N~~a~~~y~k~GF~~ 285 (292)
T TIGR03448 208 PGELLGFHWTKVHP-DEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLA-ARGLPAVMLYVEADNEAAVRTYEKLGFTV 285 (292)
T ss_pred CCcEEEEEEEEecC-CCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEeCCCHHHHHHHHHcCCEE
Confidence 58999997544322 22245677777889999999999999999999997 56999999999999999999999999998
Q ss_pred ech
Q 033454 85 ISY 87 (119)
Q Consensus 85 ~~~ 87 (119)
.+.
T Consensus 286 ~~~ 288 (292)
T TIGR03448 286 AEV 288 (292)
T ss_pred ccc
Confidence 764
No 26
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.56 E-value=4.1e-14 Score=87.70 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=70.2
Q ss_pred CCCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhc
Q 033454 1 MVSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 80 (119)
Q Consensus 1 v~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~ 80 (119)
|++.+|.+||++.+....+. +.+++..++|+|++||+|+|.+|++.++..|+ ..|++++++.+ +.+..||+++
T Consensus 44 i~E~~g~viGC~aL~~~~~~--~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar-~~gi~~lf~LT----t~~~~~F~~~ 116 (153)
T COG1246 44 IIERDGKVIGCAALHPVLEE--DLGELRSLAVHPDYRGSGRGERLLERLLADAR-ELGIKELFVLT----TRSPEFFAER 116 (153)
T ss_pred eeeeCCcEEEEEeecccCcc--CeeeEEEEEECHHhcCCCcHHHHHHHHHHHHH-HcCCceeeeee----cccHHHHHHc
Confidence 46779999999998754333 58999999999999999999999999999996 77999999877 3677899999
Q ss_pred CCeeechh
Q 033454 81 GFEDISYS 88 (119)
Q Consensus 81 Gf~~~~~~ 88 (119)
||+.+...
T Consensus 117 GF~~vd~~ 124 (153)
T COG1246 117 GFTRVDKD 124 (153)
T ss_pred CCeECccc
Confidence 99998753
No 27
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.56 E-value=2.9e-14 Score=85.26 Aligned_cols=70 Identities=23% Similarity=0.360 Sum_probs=57.2
Q ss_pred CCCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhc
Q 033454 1 MVSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 80 (119)
Q Consensus 1 v~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~ 80 (119)
|+..+|++||++.+. . ..+|..+.++|+|||+|+|++|+..+++.++ . ++..+.+. .|..+.+||+++
T Consensus 48 v~~~~~~ivG~~~~~---~----~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~-~-~~~~l~~~---~~~~a~~~y~~~ 115 (117)
T PF13673_consen 48 VAEEGGEIVGFAWLE---P----DGEISHLYVLPEYRGRGIGRALLDAAEKEAK-D-GIRRLTVE---ANERARRFYRKL 115 (117)
T ss_dssp EEEETTEEEEEEEEE---T----CEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT-T-TCEEEEEE---C-HHHHHHHHHT
T ss_pred EEEECCEEEEEEEEc---C----CCeEEEEEEChhhcCCcHHHHHHHHHHHHHH-c-CCcEEEEE---eCHHHHHHHHhC
Confidence 356789999999864 1 2348889999999999999999999999985 5 88887776 899999999999
Q ss_pred CC
Q 033454 81 GF 82 (119)
Q Consensus 81 Gf 82 (119)
||
T Consensus 116 GF 117 (117)
T PF13673_consen 116 GF 117 (117)
T ss_dssp T-
T ss_pred CC
Confidence 98
No 28
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.53 E-value=1.1e-13 Score=102.31 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=70.6
Q ss_pred CCcEEEEEEEEeecC---CCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 5 FAAMVGDVNIYMNDL---DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~---~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
+|++||++....... +.....++..++|+|+|||+|+|++|++.++++++ ..|+..+.+.+..+|.++++||+|+|
T Consensus 133 ~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~-~~G~~~i~L~V~~~N~~Ai~fY~klG 211 (547)
T TIGR03103 133 SGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQ-SRGCAYMDLSVMHDNEQAIALYEKLG 211 (547)
T ss_pred CCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEcCCCHHHHHHHHHCC
Confidence 689999997543221 11234678889999999999999999999999986 67999999999999999999999999
Q ss_pred Ceeechhh
Q 033454 82 FEDISYSE 89 (119)
Q Consensus 82 f~~~~~~~ 89 (119)
|+.++...
T Consensus 212 f~~~~~y~ 219 (547)
T TIGR03103 212 FRRIPVFA 219 (547)
T ss_pred CEEeeEEE
Confidence 99887533
No 29
>PRK10514 putative acetyltransferase; Provisional
Probab=99.53 E-value=5.3e-14 Score=87.24 Aligned_cols=71 Identities=20% Similarity=0.334 Sum_probs=58.5
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||++.+.. .++..++++|+|||+|+|+.|++.+.+.+ +++.+.+...|..|++||+|+||+
T Consensus 57 ~~~~~iG~~~~~~--------~~~~~~~v~p~~rgkGig~~Ll~~~~~~~------~~i~~~v~~~N~~a~~~yek~Gf~ 122 (145)
T PRK10514 57 ERDQPVGFMLLSG--------GHMEALFVDPDVRGCGVGRMLVEHALSLH------PELTTDVNEQNEQAVGFYKKMGFK 122 (145)
T ss_pred cCCcEEEEEEEec--------CcEeEEEECHHhccCCHHHHHHHHHHHhc------cccEEEeecCCHHHHHHHHHCCCE
Confidence 5789999998632 23456778999999999999988888754 357788999999999999999999
Q ss_pred eechh
Q 033454 84 DISYS 88 (119)
Q Consensus 84 ~~~~~ 88 (119)
..+..
T Consensus 123 ~~~~~ 127 (145)
T PRK10514 123 VTGRS 127 (145)
T ss_pred Eeccc
Confidence 98753
No 30
>PRK07757 acetyltransferase; Provisional
Probab=99.52 E-value=1.3e-13 Score=86.18 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=63.1
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
..+|++||++.+..... +.+++..++++|+|||+|+|++|++.+++++. +.++.++.+.+. +.+||+|+||
T Consensus 47 ~~~~~lvG~~~l~~~~~---~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~-~~g~~~i~~~~~-----~~~~Y~k~GF 117 (152)
T PRK07757 47 EEEGEIVGCCALHILWE---DLAEIRSLAVSEDYRGQGIGRMLVEACLEEAR-ELGVKRVFALTY-----QPEFFEKLGF 117 (152)
T ss_pred EECCEEEEEEEEEeccC---CceEEEEEEECHHHcCCCHHHHHHHHHHHHHH-hCCCCeEEEEeC-----cHHHHHHCCC
Confidence 45789999998765432 45789889999999999999999999999996 569988876553 3689999999
Q ss_pred eeech
Q 033454 83 EDISY 87 (119)
Q Consensus 83 ~~~~~ 87 (119)
+..+.
T Consensus 118 ~~~~~ 122 (152)
T PRK07757 118 REVDK 122 (152)
T ss_pred EEccc
Confidence 99875
No 31
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.51 E-value=2e-13 Score=87.23 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=63.0
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||++.+..... ..++|..++++|++||+|+|++|++.++++++ ..+++++.+.+. +.+||+|+||+
T Consensus 53 ~~~~iiG~~~~~~~~~---~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~-~~g~~~l~~~~~-----~~~fY~k~GF~ 123 (169)
T PRK07922 53 LDGEVVGCGALHVMWE---DLAEIRTVAVDPAARGRGVGHAIVERLLDVAR-ELGLSRVFVLTF-----EVEFFARHGFV 123 (169)
T ss_pred cCCcEEEEEEEeecCC---CceEEEEEEECHHHhCCCHHHHHHHHHHHHHH-HcCCCEEEEEec-----cHHHHHHCCCE
Confidence 6789999988654321 46789999999999999999999999999997 679999987664 26899999999
Q ss_pred eech
Q 033454 84 DISY 87 (119)
Q Consensus 84 ~~~~ 87 (119)
..+.
T Consensus 124 ~~~~ 127 (169)
T PRK07922 124 EIDG 127 (169)
T ss_pred ECcc
Confidence 8763
No 32
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.51 E-value=2.4e-13 Score=83.76 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCCcEEEEEEEEee--cCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 4 SFAAMVGDVNIYMN--DLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 4 ~~g~~vG~~~~~~~--~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
+++.++|++.++.. ++......+|..+.+.|+|||+|+|+.|++.+-+.|. +.|..+++..|...|..|+.+|++.|
T Consensus 62 ~~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~-~~G~~rv~w~vldwN~rAi~lY~k~g 140 (163)
T KOG3216|consen 62 SGEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEAD-KLGTPRVEWVVLDWNHRAILLYEKVG 140 (163)
T ss_pred CCCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHH-HcCCCcEEEEEeccchhHHHHHHHhC
Confidence 37889999987765 3444467899999999999999999999999999995 78999999999999999999999999
Q ss_pred Ceeec
Q 033454 82 FEDIS 86 (119)
Q Consensus 82 f~~~~ 86 (119)
++...
T Consensus 141 aq~l~ 145 (163)
T KOG3216|consen 141 AQDLK 145 (163)
T ss_pred ccccc
Confidence 99766
No 33
>PRK10562 putative acetyltransferase; Provisional
Probab=99.51 E-value=1.4e-13 Score=85.64 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=59.7
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
..+|++||++.+... ..++.++++|+|||+|+|+++++.+++. ++.+.+.+...|..|++||+|+||
T Consensus 54 ~~~~~~iG~~~~~~~-------~~i~~~~v~~~~rg~G~g~~ll~~~~~~------~~~~~~~v~~~N~~s~~~y~k~Gf 120 (145)
T PRK10562 54 EEDGKLLGFVSVLEG-------RFVGALFVAPKAVRRGIGKALMQHVQQR------YPHLSLEVYQKNQRAVNFYHAQGF 120 (145)
T ss_pred EECCEEEEEEEEeec-------cEEEEEEECHHHcCCCHHHHHHHHHHhh------CCeEEEEEEcCChHHHHHHHHCCC
Confidence 456889999986422 2577788899999999999998877664 356788899999999999999999
Q ss_pred eeech
Q 033454 83 EDISY 87 (119)
Q Consensus 83 ~~~~~ 87 (119)
+.++.
T Consensus 121 ~~~~~ 125 (145)
T PRK10562 121 RIVDS 125 (145)
T ss_pred EEccc
Confidence 99884
No 34
>PHA01807 hypothetical protein
Probab=99.50 E-value=1.3e-13 Score=86.62 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=63.3
Q ss_pred CCCCCcEEEEEEEEeecCCC-CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhc
Q 033454 2 VSSFAAMVGDVNIYMNDLDN-LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 80 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~-~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~ 80 (119)
+..+|++||++.+...+... .....+..++|+|+|||+|+|++|++.++++|+ ..|+..+.+++..+|.+++++|++.
T Consensus 58 a~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar-~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 58 VFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAG-EGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEecCCcHHHHHHHHhc
Confidence 34578999999876544221 112334446889999999999999999999996 6699999999999999999999875
Q ss_pred C
Q 033454 81 G 81 (119)
Q Consensus 81 G 81 (119)
.
T Consensus 137 ~ 137 (153)
T PHA01807 137 K 137 (153)
T ss_pred C
Confidence 4
No 35
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=3.4e-13 Score=85.52 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=72.1
Q ss_pred CCCcEEEEEEEEeecCC--CCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 4 SFAAMVGDVNIYMNDLD--NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~--~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
.+|+++|++.+...... ...+++.+.++ +|+.||+|+|++|++.+++.+. ..|++.+.+.+..+|.+|+++.+++|
T Consensus 60 ~~g~v~G~a~~~~fr~r~ay~~tve~SiYv-~~~~~g~GiG~~Ll~~Li~~~~-~~g~~~lva~I~~~n~aSi~lh~~~G 137 (169)
T COG1247 60 EDGKVLGYASAGPFRERPAYRHTVELSIYL-DPAARGKGLGKKLLQALITEAR-ALGVRELVAGIESDNLASIALHEKLG 137 (169)
T ss_pred CCCeEEEEEEeeeccCccccceEEEEEEEE-CcccccccHHHHHHHHHHHHHH-hCCeEEEEEEEcCCCcHhHHHHHHCC
Confidence 34899999998766433 34667777766 5999999999999999999996 77999999999999999999999999
Q ss_pred Ceeechhh
Q 033454 82 FEDISYSE 89 (119)
Q Consensus 82 f~~~~~~~ 89 (119)
|+.++..+
T Consensus 138 F~~~G~~~ 145 (169)
T COG1247 138 FEEVGTFP 145 (169)
T ss_pred CEEecccc
Confidence 99999443
No 36
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.48 E-value=9.3e-13 Score=75.36 Aligned_cols=60 Identities=30% Similarity=0.435 Sum_probs=51.0
Q ss_pred eEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 25 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 25 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
+.|+.+.++|++||+|+|+.++..+.+.+.+ .+.. ..+.+..+|.+|+++|+|+||+...
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~-~g~~-~~l~v~~~N~~s~~ly~klGf~~~~ 81 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLE-RGKT-PFLYVDADNEASIRLYEKLGFREIE 81 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHH-TTSE-EEEEEETT-HHHHHHHHHCT-EEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHh-CCCc-EEEEEECCCHHHHHHHHHcCCEEEE
Confidence 7899999999999999999999999998874 4654 5788999999999999999999875
No 37
>PHA00673 acetyltransferase domain containing protein
Probab=99.48 E-value=6.3e-13 Score=83.21 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=69.8
Q ss_pred CCCCCcEEEEEEEEeecCCC---CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHH
Q 033454 2 VSSFAAMVGDVNIYMNDLDN---LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ 78 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~---~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~ 78 (119)
++.+|++||++.+....... ...+.|..+.|+|++||+|||++|+++++++|+ ..|+..+++..-++. ..+.||.
T Consensus 60 a~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar-~~Gc~~lyis~~p~~-~tv~fy~ 137 (154)
T PHA00673 60 VFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALAR-DLGATGLYVSGPTEG-RLVQLLP 137 (154)
T ss_pred EEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHH-HCCCCEEEEecCCCc-cchHHHH
Confidence 44589999999877665332 256789999999999999999999999999997 669999998766554 5789999
Q ss_pred hcCCeeech
Q 033454 79 KLGFEDISY 87 (119)
Q Consensus 79 k~Gf~~~~~ 87 (119)
++|++...+
T Consensus 138 ~~g~~~~~~ 146 (154)
T PHA00673 138 AAGYRETNR 146 (154)
T ss_pred hCCchhhch
Confidence 999998764
No 38
>PLN02825 amino-acid N-acetyltransferase
Probab=99.46 E-value=4.7e-13 Score=97.82 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
++.+|++||++.+..... .+.+++..++|+|+|||+|+|++|+.++++.|+ +.|++++++.+ +.+.+||+++|
T Consensus 412 ~e~Dg~IVG~aal~~~~~--~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar-~~G~~~L~Llt----t~a~~fY~k~G 484 (515)
T PLN02825 412 VEREGSIIACAALFPFFE--EKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAA-SLGLEKLFLLT----TRTADWFVRRG 484 (515)
T ss_pred EEECCEEEEEEEEEeecC--CCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEe----CcHHHHHHHCC
Confidence 457899999998765532 257899999999999999999999999999997 67999999876 45689999999
Q ss_pred Ceeechh
Q 033454 82 FEDISYS 88 (119)
Q Consensus 82 f~~~~~~ 88 (119)
|+..+..
T Consensus 485 F~~~~~~ 491 (515)
T PLN02825 485 FSECSIE 491 (515)
T ss_pred CEEeChh
Confidence 9988753
No 39
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.42 E-value=9.1e-13 Score=90.76 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=61.6
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
+.+|++||++.+.. .+|..++|+|+|||+|+|++|++.++++++ +.|+.++.+.+...| ..||+|+||
T Consensus 12 ~~~~~iVG~~~l~~--------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~-~~g~~~i~L~t~~~~---~~fYek~GF 79 (297)
T cd02169 12 DDAGELIATGSIAG--------NVLKCVAVCPKYQGEGLALKIVSELINKAY-EEGIFHLFLFTKPKN---AKFFRGLGF 79 (297)
T ss_pred EECCEEEEEEEecc--------CEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEcccH---HHHHHHCCC
Confidence 35689999988632 258899999999999999999999999996 669999999886544 689999999
Q ss_pred eeec
Q 033454 83 EDIS 86 (119)
Q Consensus 83 ~~~~ 86 (119)
+..+
T Consensus 80 ~~~~ 83 (297)
T cd02169 80 KELA 83 (297)
T ss_pred EEec
Confidence 9887
No 40
>PRK09831 putative acyltransferase; Provisional
Probab=99.42 E-value=6.2e-13 Score=82.94 Aligned_cols=71 Identities=13% Similarity=0.283 Sum_probs=56.3
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
+..+|++||++.+.. .++..++++|++||+|+|++|++.+++.+. . + .+.+ |..+++||+|+|
T Consensus 58 ~~~~~~iiG~~~~~~--------~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~-~-----l--~v~~-~~~a~~~Y~k~G 120 (147)
T PRK09831 58 AVINAQPVGFITCIE--------HYIDMLFVDPEYTRRGVASALLKPLIKSES-E-----L--TVDA-SITAKPFFERYG 120 (147)
T ss_pred EEECCEEEEEEEehh--------ceeeeEEECHHHcCCCHHHHHHHHHHHHhh-h-----e--Eeec-chhhHHHHHHCC
Confidence 346789999987631 356778889999999999999999999875 2 2 2333 578999999999
Q ss_pred Ceeechhh
Q 033454 82 FEDISYSE 89 (119)
Q Consensus 82 f~~~~~~~ 89 (119)
|+.++..+
T Consensus 121 f~~~g~~~ 128 (147)
T PRK09831 121 FQTVKQQR 128 (147)
T ss_pred CEEeeccc
Confidence 99998643
No 41
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.42 E-value=9.6e-13 Score=90.29 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=63.6
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
..+|++||++.+..... ...++..++|+|+|||+|+|++|++.+++.+. .++.+.+...|..+++||+++||
T Consensus 52 ~~~~~~vG~~~~~~~~~---~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~-----~~~~~~~~~~n~~a~~fy~~~Gf 123 (292)
T TIGR03448 52 VDSDPIVGYANLVPARG---TDPAMAELVVHPAHRRRGIGRALIRALLAKGG-----GRLRVWAHGDLPAARALASRLGL 123 (292)
T ss_pred EECCEEEEEEEEEcCCC---CcceEEEEEECHhhcCCCHHHHHHHHHHHhcc-----CceEEEEcCCCHHHHHHHHHCCC
Confidence 45789999998765432 23578889999999999999999999998763 45777888899999999999999
Q ss_pred eeech
Q 033454 83 EDISY 87 (119)
Q Consensus 83 ~~~~~ 87 (119)
+....
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 87753
No 42
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.41 E-value=1.4e-12 Score=79.20 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=59.9
Q ss_pred CCCCCcEEEEEEEEeecCC--C--CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHH
Q 033454 2 VSSFAAMVGDVNIYMNDLD--N--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF 77 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~--~--~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y 77 (119)
+.++|++||++.+...... . .+.+.++.++++|+|||+|++++|++.+++.++ +.++..+.+.. .+..||
T Consensus 46 ~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~-~~g~~~~~l~~-----~~~~~Y 119 (127)
T PF13527_consen 46 AEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERAR-ERGVPFIFLFP-----SSPPFY 119 (127)
T ss_dssp EEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH-HTT-SEEEEE------SSHHHH
T ss_pred EEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-hCCCCEEEEec-----CChhhh
Confidence 4568999999998765321 1 146889999999999999999999999999997 44888766644 236899
Q ss_pred HhcCCeee
Q 033454 78 QKLGFEDI 85 (119)
Q Consensus 78 ~k~Gf~~~ 85 (119)
+++||+.+
T Consensus 120 ~~~G~~~~ 127 (127)
T PF13527_consen 120 RRFGFEYA 127 (127)
T ss_dssp HHTTEEEE
T ss_pred hcCCCEEC
Confidence 99999863
No 43
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.40 E-value=2.8e-12 Score=89.37 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=65.9
Q ss_pred CCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecC--CChhHHHHHHhcCC
Q 033454 5 FAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE--SNGASLRLFQKLGF 82 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~--~n~~~~~~y~k~Gf 82 (119)
++.+||++.+.... ..++|..++++|++||+|+|+.|+..+++.++ ..|+..+.+.+.+ .|..+++||+++||
T Consensus 242 d~givG~~~~~~~~----~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~-~~G~~~i~l~v~~~~~N~~A~~fY~~~GF 316 (320)
T TIGR01686 242 DSGIIGIFVFEKKE----GNLFIDDLCMSCRALGRGVETRMLRWLFEQAL-DLGNHNARLYYRRTERNMPFLSFYEQIGF 316 (320)
T ss_pred CCceEEEEEEEecC----CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHH-HcCCCeEEEEEeeCCCchHHHHHHHHcCC
Confidence 56799999764332 56789999999999999999999999999997 6799999998864 79999999999999
Q ss_pred eee
Q 033454 83 EDI 85 (119)
Q Consensus 83 ~~~ 85 (119)
+.+
T Consensus 317 ~~~ 319 (320)
T TIGR01686 317 EDE 319 (320)
T ss_pred ccC
Confidence 864
No 44
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.40 E-value=2.1e-12 Score=93.44 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=65.6
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
++.+|++||++.+..... ...++|..++++|+|||+|+|++|++.++++++ ..++..+.+.+ ..++.||+|+|
T Consensus 339 a~~dg~iVG~~~~~~~~~--~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~-~~g~~~l~l~~----~~a~~fY~k~G 411 (441)
T PRK05279 339 IERDGLIIGCAALYPFPE--EKMGEMACLAVHPDYRGSGRGERLLKRIEQRAR-QLGLKRLFVLT----TRTAHWFLERG 411 (441)
T ss_pred EEECCEEEEEEEEEEcCC--CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEec----chHHHHHHHCc
Confidence 356789999998665432 246889999999999999999999999999996 66998886543 46889999999
Q ss_pred Ceeech
Q 033454 82 FEDISY 87 (119)
Q Consensus 82 f~~~~~ 87 (119)
|+.++.
T Consensus 412 F~~~g~ 417 (441)
T PRK05279 412 FVPVDV 417 (441)
T ss_pred CEECCh
Confidence 999885
No 45
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.39 E-value=2.3e-12 Score=92.99 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=65.5
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
++.+|++||++.+..... ...+++..++++|+|||+|+|++|+++++++|+ +.++..+++. ..| +.+||+|+|
T Consensus 327 ~~~dg~iVG~~~~~~~~~--~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~-~~G~~~l~v~--~~~--a~~fY~k~G 399 (429)
T TIGR01890 327 IEHDGNIIGCAALYPYAE--EDCGEMACLAVSPEYQDGGRGERLLAHIEDRAR-QMGISRLFVL--TTR--TGHWFRERG 399 (429)
T ss_pred EEECCEEEEEEEEEecCC--CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEe--ecc--hHHHHHHCC
Confidence 346789999998765432 256899999999999999999999999999997 6699887643 334 579999999
Q ss_pred Ceeechh
Q 033454 82 FEDISYS 88 (119)
Q Consensus 82 f~~~~~~ 88 (119)
|+.++..
T Consensus 400 F~~~g~~ 406 (429)
T TIGR01890 400 FQTASVD 406 (429)
T ss_pred CEECChh
Confidence 9999864
No 46
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.39 E-value=2.3e-12 Score=96.52 Aligned_cols=79 Identities=22% Similarity=0.237 Sum_probs=65.5
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
++.+|++||++.+...+. ..++|..++|+|+|||+|+|+.|++.++++++ ..+++.+.+.+ .+.+||+|+|
T Consensus 508 a~~~g~IVG~~~l~~~~~---~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak-~~g~~~i~l~~-----~a~~FYek~G 578 (614)
T PRK12308 508 AEHHGEVTGCASLYIYDS---GLAEIRSLGVEAGWQVQGQGSALVQYLVEKAR-QMAIKKVFVLT-----RVPEFFMKQG 578 (614)
T ss_pred EEECCEEEEEEEEEEcCC---CeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEee-----CcHHHHHHCC
Confidence 456889999998765432 45789999999999999999999999999997 66999988754 2468999999
Q ss_pred Ceeechhh
Q 033454 82 FEDISYSE 89 (119)
Q Consensus 82 f~~~~~~~ 89 (119)
|+.+++..
T Consensus 579 F~~~~~~~ 586 (614)
T PRK12308 579 FSPTSKSL 586 (614)
T ss_pred CEECCccc
Confidence 99988543
No 47
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.38 E-value=3.3e-12 Score=72.59 Aligned_cols=77 Identities=25% Similarity=0.357 Sum_probs=68.8
Q ss_pred CCCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhc
Q 033454 1 MVSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 80 (119)
Q Consensus 1 v~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~ 80 (119)
|.+.+|.+|.++.+ +++++++...+.|+|||||+.+.++....+++. +.|++ ++..|..+|..++++.+++
T Consensus 3 llgpeG~PVSW~lm-------dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~-~~g~P-~Y~hv~~~N~~~~r~~~~l 73 (89)
T PF08444_consen 3 LLGPEGNPVSWSLM-------DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLH-KLGFP-FYGHVDEDNEASQRLSKSL 73 (89)
T ss_pred ccCCCCCEeEEEEe-------cccccccccccCHhHhcCCHHHHHHHHHHHHHH-HCCCC-eEeehHhccHHHHHHHHHC
Confidence 46789999999875 267889999999999999999999999999986 66998 6899999999999999999
Q ss_pred CCeeec
Q 033454 81 GFEDIS 86 (119)
Q Consensus 81 Gf~~~~ 86 (119)
||....
T Consensus 74 g~~~~p 79 (89)
T PF08444_consen 74 GFIFMP 79 (89)
T ss_pred CCeecC
Confidence 999765
No 48
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.34 E-value=6.9e-12 Score=79.95 Aligned_cols=81 Identities=17% Similarity=0.123 Sum_probs=67.9
Q ss_pred CCcEEEEEEEEeecCCC-CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 5 FAAMVGDVNIYMNDLDN-LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~-~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+++||+.. ++.+.+. ....++.-+-+.++|||+|||+.|++.+...+. ..+.++|.++|+..|.+|++||+++||.
T Consensus 101 ~~~~vgf~~-Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~-~~~~~kVmLTVf~~N~~al~Fy~~~gf~ 178 (202)
T KOG2488|consen 101 KSKLVGFTM-FRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLAD-SRHMRKVMLTVFSENIRALGFYHRLGFV 178 (202)
T ss_pred CCceeeEEE-EEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHH-HHHhhhheeeeecccchhHHHHHHcCcc
Confidence 348999998 4444433 256777777778999999999999999999985 6699999999999999999999999999
Q ss_pred eech
Q 033454 84 DISY 87 (119)
Q Consensus 84 ~~~~ 87 (119)
....
T Consensus 179 ~~~~ 182 (202)
T KOG2488|consen 179 VDEE 182 (202)
T ss_pred cCCC
Confidence 8764
No 49
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=9e-12 Score=76.61 Aligned_cols=92 Identities=45% Similarity=0.733 Sum_probs=78.6
Q ss_pred CcEEEEEEEEeecCCC-------CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHH
Q 033454 6 AAMVGDVNIYMNDLDN-------LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ 78 (119)
Q Consensus 6 g~~vG~~~~~~~~~~~-------~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~ 78 (119)
...||-++++..+..+ ...+++...+..|..||+|+|++++..++.|+....++.+..+.+...|.+++++|+
T Consensus 82 ~~MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk 161 (185)
T KOG4135|consen 82 DHMVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK 161 (185)
T ss_pred hhhccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH
Confidence 3578999888765443 246889999999999999999999999999999888999999999999999999999
Q ss_pred hcCCeeechhhhhhhhccc
Q 033454 79 KLGFEDISYSEIFKEVTLE 97 (119)
Q Consensus 79 k~Gf~~~~~~~~~~~~~~~ 97 (119)
|++|..+.+...++.+.++
T Consensus 162 k~~f~q~~~ns~f~~v~Le 180 (185)
T KOG4135|consen 162 KFLFTQVFYNSSFPHVTLE 180 (185)
T ss_pred HhhheeeeeeccccceEEe
Confidence 9999999876666555443
No 50
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.32 E-value=1.5e-11 Score=82.23 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=64.4
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++|..+......+ ..+.|+.+.++|+|||||+|+.++..+.+-...+ |.. ..+.+..+|+.|.++|+|.||+
T Consensus 184 ~d~~iVa~A~t~a~~~---~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~e-Gk~-~~L~~~~~N~~A~~iY~riGF~ 258 (268)
T COG3393 184 GDGKIVAKAETAAENP---AYAQINGVYTHPEYRGKGYATALVATLAAKLLAE-GKI-PCLFVNSDNPVARRIYQRIGFR 258 (268)
T ss_pred cCCcEEEeeeccccCC---cceEEEEEEcCHHHccccHHHHHHHHHHHHHHhC-CCe-eEEEEecCCHHHHHHHHHhCCe
Confidence 4568998887544443 6799999999999999999999999999887644 533 3456668999999999999999
Q ss_pred eech
Q 033454 84 DISY 87 (119)
Q Consensus 84 ~~~~ 87 (119)
..+.
T Consensus 259 ~~g~ 262 (268)
T COG3393 259 EIGE 262 (268)
T ss_pred ecce
Confidence 9883
No 51
>PRK13688 hypothetical protein; Provisional
Probab=99.31 E-value=1.3e-11 Score=77.99 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=55.5
Q ss_pred CCCCcEEEEEEEEeecC-------CCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHH
Q 033454 3 SSFAAMVGDVNIYMNDL-------DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLR 75 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~-------~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~ 75 (119)
..++++||++.+...+. .....++|..++++|+|||+|+|++|++.+.+ .++. + .+...| .+.+
T Consensus 51 ~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~-----~~~~-~--~~~~~~-~a~~ 121 (156)
T PRK13688 51 YYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS-----FQLP-I--KTIARN-KSKD 121 (156)
T ss_pred EECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH-----hCCe-E--EEEecc-chHH
Confidence 35789999887643321 12256899999999999999999999875432 2433 2 233445 5789
Q ss_pred HHHhcCCeeechh
Q 033454 76 LFQKLGFEDISYS 88 (119)
Q Consensus 76 ~y~k~Gf~~~~~~ 88 (119)
||+|+||+.++..
T Consensus 122 FY~k~GF~~~~~~ 134 (156)
T PRK13688 122 FWLKLGFTPVEYK 134 (156)
T ss_pred HHHhCCCEEeEEe
Confidence 9999999998754
No 52
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.28 E-value=1.3e-11 Score=77.62 Aligned_cols=83 Identities=22% Similarity=0.204 Sum_probs=70.8
Q ss_pred CCCCcEEEEEEEEee--cCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhc
Q 033454 3 SSFAAMVGDVNIYMN--DLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 80 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~--~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~ 80 (119)
..+|++||++.+... +..-..-+.||+-+. |+.||||+|++++..+++.|+ ..+++++.+++..+|.+|.++-+++
T Consensus 75 ~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~Vr-PseR~KGYA~emLkl~L~~ar-~lgi~~Vlvtcd~dN~ASrkvI~~N 152 (174)
T COG3981 75 DEDGQIVGFINLRHQLNDFLLEEGGHIGYSVR-PSERRKGYAKEMLKLALEKAR-ELGIKKVLVTCDKDNIASRKVIEAN 152 (174)
T ss_pred ecCCcEEEEEEeeeecchHHHhcCCcccceeC-hhhhccCHHHHHHHHHHHHHH-HcCCCeEEEEeCCCCchhhHHHHhc
Confidence 347999999997643 222224678999776 999999999999999999996 7899999999999999999999999
Q ss_pred CCeeech
Q 033454 81 GFEDISY 87 (119)
Q Consensus 81 Gf~~~~~ 87 (119)
|=..+.+
T Consensus 153 GGile~~ 159 (174)
T COG3981 153 GGILENE 159 (174)
T ss_pred CCEEeEE
Confidence 9888774
No 53
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.26 E-value=2.7e-11 Score=84.70 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=63.5
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
..+|++||++++.. ..+..++|+|+|||+|+|++|+..++++++ +.|+..+.+.+.+.| ..||+++||
T Consensus 37 ~~~~~lVg~g~l~g--------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~-~~G~~~l~l~Tk~~~---~~fy~klGF 104 (332)
T TIGR00124 37 YEDEEIIGCGGIAG--------NVIKCVAIDESLRGEGLALQLMTELENLAY-ELGRFHLFIFTKPEY---AALFEYCGF 104 (332)
T ss_pred EECCEEEEEEEEec--------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEECchH---HHHHHHcCC
Confidence 45789999998632 148899999999999999999999999997 669999999997666 479999999
Q ss_pred eeechhh
Q 033454 83 EDISYSE 89 (119)
Q Consensus 83 ~~~~~~~ 89 (119)
...+...
T Consensus 105 ~~i~~~~ 111 (332)
T TIGR00124 105 KTLAEAK 111 (332)
T ss_pred EEeeeec
Confidence 9988543
No 54
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.22 E-value=1.5e-10 Score=71.03 Aligned_cols=80 Identities=14% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++++++.+....... ....||++++.|+.||+|+|.+||..+++.+.+.+.-+.+++ ....-.+.||.++||+
T Consensus 57 ~~g~LvAyaRLl~~~~~~-~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l---~AQahLq~fYa~~GFv 132 (155)
T COG2153 57 PDGELVAYARLLPPGAEY-EEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYL---GAQAHLQDFYASFGFV 132 (155)
T ss_pred CCCeEEEEEecCCCCCCc-CceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEE---ehHHHHHHHHHHhCcE
Confidence 489999999987776655 337899999999999999999999999999986654455544 3466789999999999
Q ss_pred eech
Q 033454 84 DISY 87 (119)
Q Consensus 84 ~~~~ 87 (119)
.++.
T Consensus 133 ~~~e 136 (155)
T COG2153 133 RVGE 136 (155)
T ss_pred EcCc
Confidence 9873
No 55
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.22 E-value=1.2e-10 Score=72.41 Aligned_cols=84 Identities=23% Similarity=0.257 Sum_probs=72.8
Q ss_pred CCCcEEEEEEEEeecC-C-CCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHH-hc
Q 033454 4 SFAAMVGDVNIYMNDL-D-NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ-KL 80 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~-~-~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-k~ 80 (119)
.+|++||++-....+. + ....+.|..+.|...||+.|+|++||.....-..+..+.+.+.++|+.+|.+|+.+|+ .+
T Consensus 49 ~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl 128 (193)
T KOG3235|consen 49 ENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTL 128 (193)
T ss_pred CCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhcc
Confidence 6899999998776542 2 2357999999999999999999999999887776677889999999999999999999 99
Q ss_pred CCeeech
Q 033454 81 GFEDISY 87 (119)
Q Consensus 81 Gf~~~~~ 87 (119)
||+....
T Consensus 129 ~F~v~ev 135 (193)
T KOG3235|consen 129 GFVVCEV 135 (193)
T ss_pred ceEEeec
Confidence 9998764
No 56
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.21 E-value=2e-11 Score=77.64 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=68.5
Q ss_pred CCCCCCcEEEEEEEEeecCC--CCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHH
Q 033454 1 MVSSFAAMVGDVNIYMNDLD--NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ 78 (119)
Q Consensus 1 v~~~~g~~vG~~~~~~~~~~--~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~ 78 (119)
|+.++|++||.+.+.+.+-. .....-++.+.|+|++||||||++|++..++.++ ..|...+.+.= --.+|.
T Consensus 50 VA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~-~~G~~~v~vlG------dp~YY~ 122 (171)
T COG3153 50 VAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALR-LAGASAVVVLG------DPTYYS 122 (171)
T ss_pred EEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHH-HCCCCEEEEec------Cccccc
Confidence 45667999999999887655 3467789999999999999999999999999996 66988775522 235799
Q ss_pred hcCCeeechhhhhh
Q 033454 79 KLGFEDISYSEIFK 92 (119)
Q Consensus 79 k~Gf~~~~~~~~~~ 92 (119)
++||+.........
T Consensus 123 rfGF~~~~~~~l~~ 136 (171)
T COG3153 123 RFGFEPAAGAKLYA 136 (171)
T ss_pred ccCcEEcccccccc
Confidence 99999988654433
No 57
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.20 E-value=1.5e-10 Score=70.22 Aligned_cols=78 Identities=17% Similarity=0.321 Sum_probs=67.2
Q ss_pred CCcEEEEEEEEeecC---CCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 5 FAAMVGDVNIYMNDL---DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~---~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
.+++||.+++...-. .-...+.|..++|++++||+++|+.++..+++.++ .+|+-++.+.+.+.| +.||+|+|
T Consensus 63 s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k-~lgcYKi~LdC~~~n---v~FYeKcG 138 (150)
T KOG3396|consen 63 SEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAK-SLGCYKIILDCDPKN---VKFYEKCG 138 (150)
T ss_pred cCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHH-hcCcEEEEEecchhh---hhHHHHcC
Confidence 578999998775431 12256889999999999999999999999999997 889999999999999 58999999
Q ss_pred Ceeec
Q 033454 82 FEDIS 86 (119)
Q Consensus 82 f~~~~ 86 (119)
|...+
T Consensus 139 ~s~~~ 143 (150)
T KOG3396|consen 139 YSNAG 143 (150)
T ss_pred ccccc
Confidence 99765
No 58
>PRK01346 hypothetical protein; Provisional
Probab=99.16 E-value=2.6e-10 Score=81.89 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=62.2
Q ss_pred CCCCcEEEEEEEEeecC----C-CCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHH
Q 033454 3 SSFAAMVGDVNIYMNDL----D-NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF 77 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~----~-~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y 77 (119)
..+|++||++.+..... . ..+...|..+.++|+|||+|+|++|++.+++.++ +.|...+.+.+.. ..||
T Consensus 53 ~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~-~~g~~~~~L~~~~-----~~~Y 126 (411)
T PRK01346 53 FDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIR-ERGEPVAALTASE-----GGIY 126 (411)
T ss_pred EECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHH-HCCCcEEEEECCc-----hhhH
Confidence 45789999998764431 1 1246889999999999999999999999999997 5688777666432 3689
Q ss_pred HhcCCeeech
Q 033454 78 QKLGFEDISY 87 (119)
Q Consensus 78 ~k~Gf~~~~~ 87 (119)
+|+||.....
T Consensus 127 ~r~Gf~~~~~ 136 (411)
T PRK01346 127 GRFGYGPATY 136 (411)
T ss_pred hhCCCeeccc
Confidence 9999998764
No 59
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.11 E-value=6.8e-10 Score=58.39 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=51.1
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEE
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRA 64 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~ 64 (119)
+..++++||++.+...+... +.+++..+.++|+|||+|+|++++..+++++++ .+++++.+
T Consensus 4 ~~~~~~~ig~~~~~~~~~~~-~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~-~~~~~v~~ 64 (65)
T cd04301 4 AEDDGEIVGFASLSPDGSGG-DTAYIGDLAVLPEYRGKGIGSALLEAAEEEARE-RGAKRLRL 64 (65)
T ss_pred EecCCEEEEEEEEEecCCCC-ccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHH-cCCcEEEe
Confidence 34578999999987766433 679999889999999999999999999999974 68888765
No 60
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.00 E-value=1e-09 Score=70.64 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=60.4
Q ss_pred eEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcC-ccEEEEeecCCChhHHHHHHhcCCeeechhhhhhh
Q 033454 25 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFG-IHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKE 93 (119)
Q Consensus 25 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~-~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 93 (119)
..|-.+.+.+.||.+|||+.++..+.+++. ..+ ++.+++++...|..++.||++.||+.+.+...+..
T Consensus 90 ~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~-~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~ 158 (187)
T KOG3138|consen 90 IYILSLGVLPRYRNKGIGSKLLEFVKKYCS-EAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYS 158 (187)
T ss_pred eEEEeecccHHHHhcchHHHHHHHHHHHHh-cccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccc
Confidence 778888999999999999999999999986 445 88999999999999999999999999986554443
No 61
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.99 E-value=5.1e-09 Score=77.14 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=59.9
Q ss_pred CCcEEEEEEEEeecCC-----CCCeeEEEEEE-----------eCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecC
Q 033454 5 FAAMVGDVNIYMNDLD-----NLELAEVEIMI-----------AEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 68 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~-----~~~~~~i~~~~-----------v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~ 68 (119)
++.+||++.+...... ...++.|..+. .+++|||+|+|++|++.++++|+ +.|+..+.+.
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar-~~G~~~i~v~--- 497 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAA-EEGSEKILVI--- 497 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHH-HCCCCEEEEe---
Confidence 4689999987655321 11234444443 25899999999999999999997 5599998763
Q ss_pred CChhHHHHHHhcCCeeec
Q 033454 69 SNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 69 ~n~~~~~~y~k~Gf~~~~ 86 (119)
+|..+++||+|+||+..+
T Consensus 498 s~~~A~~FY~klGf~~~g 515 (522)
T TIGR01211 498 SGIGVREYYRKLGYELDG 515 (522)
T ss_pred eCchHHHHHHHCCCEEEc
Confidence 488999999999999887
No 62
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.99 E-value=2.2e-09 Score=67.88 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=65.4
Q ss_pred CCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCee
Q 033454 5 FAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 84 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~ 84 (119)
...+||...+......+ +...+..++|+++.||+|+|+.||..+..|++ ..+++++++.+... .+||+++||+.
T Consensus 65 ~~~VigH~rLS~i~n~~-~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R-~~gf~~~yLsT~DQ----~~FYe~lGYe~ 138 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNRD-HALWVESVVVKKDQRGLGFGKFLMKSTEKWMR-EKGFNEAYLSTDDQ----CRFYESLGYEK 138 (225)
T ss_pred ccceeeeeccccCCCCC-ceeEEEEEEEehhhccccHHHHHHHHHHHHHH-Hhhhhheeeecccc----hhhhhhhcccc
Confidence 45789998877765444 78899999999999999999999999999997 55899999987544 48999999998
Q ss_pred echh
Q 033454 85 ISYS 88 (119)
Q Consensus 85 ~~~~ 88 (119)
..-.
T Consensus 139 c~Pi 142 (225)
T KOG3397|consen 139 CDPI 142 (225)
T ss_pred cCce
Confidence 7643
No 63
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=98.96 E-value=8.9e-09 Score=64.07 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=68.4
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++.|++...........++.+.-+.|.|+||+.|+|+.++..+.+... ..+.--+.+.+..+|..|+.+|+++||.
T Consensus 49 p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d-~~~a~fvDLfVr~sN~iAI~mYkkLGY~ 127 (173)
T KOG3234|consen 49 PTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSD-VDNAYFVDLFVRVSNQIAIDMYKKLGYS 127 (173)
T ss_pred CCCceEEEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHH-hhhhheeeeeeeccchhHHHHHHhcCce
Confidence 457889998764444444456888889999999999999999999999875 4466778899999999999999999999
Q ss_pred eech
Q 033454 84 DISY 87 (119)
Q Consensus 84 ~~~~ 87 (119)
.-.+
T Consensus 128 ~YR~ 131 (173)
T KOG3234|consen 128 VYRT 131 (173)
T ss_pred EEEe
Confidence 7654
No 64
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=98.86 E-value=2.9e-08 Score=67.46 Aligned_cols=79 Identities=28% Similarity=0.269 Sum_probs=56.2
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
..+|++|+.|.-..... +..+|.... +|+|||||+|+.+...++..|.++ ++... ..+ .|.+|+++.+|+||
T Consensus 171 ~~~~~iVs~~~s~~~~~---~~~EI~I~T-~~~yR~kGLA~~~aa~~I~~Cl~~-~l~P~-WDc--~N~~S~~lA~kLGf 242 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYE---NGIEIDIET-HPEYRGKGLATAVAAAFILECLEN-GLYPS-WDC--HNLASIALAEKLGF 242 (265)
T ss_dssp EETTEEEEEEEEEEEET---TEEEEEEEE--CCCTTSSHHHHHHHHHHHHHHHT-T-EEE--EE--SSHHHHHHHHHCT-
T ss_pred EECCEEEEEEEEEEEEC---CEEEEEEEE-CHHhhcCCHHHHHHHHHHHHHHHC-CCCcC-eeC--CCHHHHHHHHHcCC
Confidence 45677876654222221 567888866 599999999999999999999844 66543 333 69999999999999
Q ss_pred eeechhh
Q 033454 83 EDISYSE 89 (119)
Q Consensus 83 ~~~~~~~ 89 (119)
+......
T Consensus 243 ~~~~~Y~ 249 (265)
T PF12746_consen 243 HFDFEYT 249 (265)
T ss_dssp -EEEEEE
T ss_pred cccceee
Confidence 9987544
No 65
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.73 E-value=2.7e-07 Score=51.72 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=48.8
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhc
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 80 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~ 80 (119)
.+|+.+|.+.+.. ..+...+....+.|++||+|+|++|++.++++++ ..+.+ |...+ +-+.+++++.
T Consensus 6 ~~g~~~a~l~Y~~----~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~-~~~~k-v~p~C----~y~~~~~~~h 72 (78)
T PF14542_consen 6 DDGEEIAELTYRE----DGGVIVITHTEVPPELRGQGIAKKLVEAALDYAR-ENGLK-VVPTC----SYVAKYFRRH 72 (78)
T ss_dssp SSTTEEEEEEEEE----SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHH-HTT-E-EEETS----HHHHHHHHH-
T ss_pred ECCEEEEEEEEEe----CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHH-HCCCE-EEEEC----HHHHHHHHhC
Confidence 4688999999644 2278888888999999999999999999999997 44655 32322 5556666543
No 66
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.62 E-value=1.6e-07 Score=61.13 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=46.4
Q ss_pred eeEEEEEEeCccccCCcHHHHHHHHHHHHHH------------------------HhcCccEEEEeecCCChhHHHHHHh
Q 033454 24 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV------------------------ENFGIHVFRAKIGESNGASLRLFQK 79 (119)
Q Consensus 24 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~------------------------~~~~~~~i~~~~~~~n~~~~~~y~k 79 (119)
...|.+++|+|++|++|+|+++++.+.+++. ...++.-+ ...+..+....+|+.|
T Consensus 90 g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDyl-GtSFG~t~~Ll~FW~k 168 (196)
T PF13718_consen 90 GARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYL-GTSFGATPELLKFWQK 168 (196)
T ss_dssp EEEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEE-EEEEE--HHHHHHHHC
T ss_pred ceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEE-EeccCCCHHHHHHHHH
Confidence 5789999999999999999999999999983 13356654 4567778899999999
Q ss_pred cCCeeechhhh
Q 033454 80 LGFEDISYSEI 90 (119)
Q Consensus 80 ~Gf~~~~~~~~ 90 (119)
+||..+.-...
T Consensus 169 ~gf~pv~l~~~ 179 (196)
T PF13718_consen 169 NGFVPVYLGQT 179 (196)
T ss_dssp TT-EEEEE-SS
T ss_pred CCcEEEEEecC
Confidence 99999864433
No 67
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=98.58 E-value=8.1e-08 Score=59.76 Aligned_cols=80 Identities=10% Similarity=0.100 Sum_probs=59.6
Q ss_pred CCcEEEEEEEEeecCCC------------CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChh
Q 033454 5 FAAMVGDVNIYMNDLDN------------LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 72 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~------------~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~ 72 (119)
+|.+||++.....+... .+...|+.++++|+||.+|+|..|+..-+++.-++.-.+++ +....++
T Consensus 70 ~~tLIghIigs~~~~E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~---~Li~h~p 146 (190)
T KOG4144|consen 70 EGTLIGHIIGSLWDKERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRA---ALICHDP 146 (190)
T ss_pred cccceehhhcccCcchhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccce---eeeecCC
Confidence 57888888765554321 24588999999999999999999999877665433223344 3334678
Q ss_pred HHHHHHhcCCeeech
Q 033454 73 SLRLFQKLGFEDISY 87 (119)
Q Consensus 73 ~~~~y~k~Gf~~~~~ 87 (119)
.+-||+++||+.++.
T Consensus 147 LvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 147 LVPFYERFGFKAVGP 161 (190)
T ss_pred ccchhHhcCceeecc
Confidence 899999999999985
No 68
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.55 E-value=7.4e-07 Score=54.11 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=66.9
Q ss_pred CCCCcEEEEEEEEeecCCC------------CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCC-
Q 033454 3 SSFAAMVGDVNIYMNDLDN------------LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES- 69 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~------------~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~- 69 (119)
..+|.+.|++..+..+... .+..++..++|...-||+|+|+.+.+.+.+++. ..|+..+++++..+
T Consensus 51 rR~G~l~afl~tFd~~a~ydSpNFlWFrErYe~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae-~agy~~~tCEVn~Dp 129 (167)
T COG3818 51 RRDGNLAAFLVTFDSSARYDSPNFLWFRERYENFFYVDRVVVASRARGRGVARALYADLFSYAE-LAGYPYLTCEVNLDP 129 (167)
T ss_pred hhccchhhheeeccccccCCCCceeehhhhCCceEEEEEEEEEecccccchHHHHHHHHHHHHH-hcCCceEEEEecCCC
Confidence 3456666666555443322 256789999998899999999999999999995 66999998877654
Q ss_pred -ChhHHHHHHhcCCeeech
Q 033454 70 -NGASLRLFQKLGFEDISY 87 (119)
Q Consensus 70 -n~~~~~~y~k~Gf~~~~~ 87 (119)
|++|..|-..+||..+|.
T Consensus 130 pnpasdaFHaalGF~eVG~ 148 (167)
T COG3818 130 PNPASDAFHAALGFHEVGQ 148 (167)
T ss_pred CChHHHHHhhhcCceEccc
Confidence 889999999999999985
No 69
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.37 E-value=1.4e-06 Score=66.47 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=57.8
Q ss_pred eeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechhhhhhhhc
Q 033454 24 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVT 95 (119)
Q Consensus 24 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~ 95 (119)
...|..++|+|++|++|||++++..++++++ .++.-+ ...+..+....+|+.|+||.++.-.++.+...
T Consensus 531 G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~--~~~Dwl-gvsFG~t~~L~rFW~rnGF~pVhls~~rn~~S 599 (758)
T COG1444 531 GWRIVRIAVHPELQRMGIGSRLLALLIEEAR--KGLDWL-GVSFGYTEELLRFWLRNGFVPVHLSPTRNASS 599 (758)
T ss_pred eeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh--cCCCEE-eeccCCCHHHHHHHHHcCeEEEEecCccCcCC
Confidence 4679999999999999999999999999985 355544 45788899999999999999998766666543
No 70
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.29 E-value=4.8e-06 Score=56.99 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=60.9
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
+++++|++.+++-. -|.++++++.+||-|++-+|+.++++++. ++|...+++.+.+.+ .++|+.+||.
T Consensus 44 ~~~~iiacGsiaGn--------vikcvAvs~s~qGeGl~lkl~TeLin~ay-~~g~~hLFiyTKp~~---~~lFk~~GF~ 111 (352)
T COG3053 44 DNEEIIACGSIAGN--------VIKCVAVSESLQGEGLALKLVTELINLAY-ERGRTHLFIYTKPEY---AALFKQCGFS 111 (352)
T ss_pred CCCcEEEecccccc--------eeEEEEechhcccccHHHHHHHHHHHHHH-HcCCceEEEEechhH---HHHHHhCCce
Confidence 45788888775332 37888999999999999999999999997 679999999997766 5799999999
Q ss_pred eech
Q 033454 84 DISY 87 (119)
Q Consensus 84 ~~~~ 87 (119)
....
T Consensus 112 ~i~~ 115 (352)
T COG3053 112 EIAS 115 (352)
T ss_pred Eeec
Confidence 8874
No 71
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.21 E-value=5e-06 Score=48.49 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=44.8
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccE
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHV 61 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~ 61 (119)
...+|+.+|.+......+ +...|....|.+++||||+|++|+..+++.++ +.+++-
T Consensus 20 ~~~~G~~~~e~~y~~~~~---~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar-~~g~ki 75 (99)
T COG2388 20 LTDEGEVIGEATYYDRGE---NLIIIDHTYVPDELRGQGIAQKLVEKALEEAR-EAGLKI 75 (99)
T ss_pred EecCCcEEEEEEEecCCC---CEEEEecCcCCHHHcCCcHHHHHHHHHHHHHH-HcCCeE
Confidence 346788889887555442 56788888899999999999999999999997 557653
No 72
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.17 E-value=4.6e-05 Score=46.25 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=54.1
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecC----CChhHHHHHHh
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE----SNGASLRLFQK 79 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~----~n~~~~~~y~k 79 (119)
-++.++|.+.+...+ +.+.++.+.|.+.=|++|+|..|++.+...+ .+++...+.... +...+..|...
T Consensus 45 FNdRlLgAv~v~~~~----~~~~L~~l~VRevTRrRGVG~yLlee~~rq~---p~i~~w~l~~~~~~~~~~~~~~~Fm~a 117 (128)
T PF12568_consen 45 FNDRLLGAVKVTISG----QQAELSDLCVREVTRRRGVGLYLLEEVLRQL---PDIKHWWLADEGVEPQDRAVMAAFMQA 117 (128)
T ss_dssp ETTEEEEEEEEEEET----TEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS----S--EEEE--TT-S--THHHHHHHHHH
T ss_pred echheeeeEEEEEcC----cceEEeeEEEeeccccccHHHHHHHHHHHHC---CCCcEEEEecCCCcccchHHHHHHHHH
Confidence 478899999877665 6899999999999999999999999998876 355655554332 33577789999
Q ss_pred cCCeeec
Q 033454 80 LGFEDIS 86 (119)
Q Consensus 80 ~Gf~~~~ 86 (119)
+||...+
T Consensus 118 ~GF~~~~ 124 (128)
T PF12568_consen 118 CGFSAQS 124 (128)
T ss_dssp HT-EE-S
T ss_pred cCccccC
Confidence 9997654
No 73
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=46.01 Aligned_cols=44 Identities=30% Similarity=0.528 Sum_probs=38.8
Q ss_pred EEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 30 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 30 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
+.++|++||+|+|+.|+..+++++. ..++. .|..+..++.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~-~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWAR-KRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHH-HcCce--------ehHHHHHHHHhcCC
Confidence 7888999999999999999999986 44544 68899999999998
No 74
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.99 E-value=1.4e-05 Score=56.09 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=50.1
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
+++.|+.+.+.|+|||+|..++|+.+.+.... +.|++...++ +.+.++|+|+||+..+.
T Consensus 69 ~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~-~kG~p~s~L~-----P~s~~iYrKfGye~asn 127 (389)
T COG4552 69 PTAGIAGVASAPTYRRRGALRALLAHSLREIA-RKGYPVSALH-----PFSGGIYRKFGYEYASN 127 (389)
T ss_pred eccceEEEEechhhccCcHHHHHHHHHHHHHH-HcCCeeEEec-----cCchhhHhhccccccce
Confidence 46789999999999999999999999998875 5588876663 46678999999998774
No 75
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=97.99 E-value=6.6e-05 Score=45.03 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=52.8
Q ss_pred CCcEEEEEEEEeecCCCC--CeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 5 FAAMVGDVNIYMNDLDNL--ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~~--~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
+|.+||++.+......+. ..+.-.++++ ..||++|+|+++...+....+ +. -.+.+...|.+|+.++++.-.
T Consensus 45 ~~~~igf~l~L~~~~~~~~iD~~~~efFIi-~k~~~~GvGR~aaK~If~~~~---g~--w~Va~i~EN~PA~~fwK~~~~ 118 (143)
T COG5628 45 GGLPVGFALVLDLAHSPTPIDRAVAEFFIV-RKHRRRGVGRAAAKAIFGSAW---GV--WQVATVRENTPARAFWKRVAE 118 (143)
T ss_pred CCceeeeeeeecccCCCCcccccchheEee-ehhhccchhHHHHHHHHHHhh---ce--EEEEEeccCChhHHHHHhhhc
Confidence 688999998765543321 2333344555 899999999999998877654 32 334567899999999998766
Q ss_pred ee
Q 033454 83 ED 84 (119)
Q Consensus 83 ~~ 84 (119)
..
T Consensus 119 t~ 120 (143)
T COG5628 119 TY 120 (143)
T ss_pred cc
Confidence 53
No 76
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.55 E-value=0.0011 Score=42.81 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=52.0
Q ss_pred CCCcEEEEEEEEeecCC----CCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHH-H
Q 033454 4 SFAAMVGDVNIYMNDLD----NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF-Q 78 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~----~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y-~ 78 (119)
..+++|+.+.+....+. +.+...+|++..+|+|||+|+++.+-+.+.+..+ .-+-.. .+ ..|..+.++| +
T Consensus 54 gT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~-~~~~N~-~~---~~~~~~~~~w~k 128 (181)
T PF06852_consen 54 GTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELD-SVDDNS-VA---QGNVKMSNFWHK 128 (181)
T ss_pred CCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhc-cCCCce-ee---ecCHHHHHHHHH
Confidence 35679999988766542 2357889999999999999999755444445443 223232 22 3455666666 5
Q ss_pred hcCCeeech
Q 033454 79 KLGFEDISY 87 (119)
Q Consensus 79 k~Gf~~~~~ 87 (119)
-+||...+.
T Consensus 129 ~~G~~~~~h 137 (181)
T PF06852_consen 129 MFGFDDYGH 137 (181)
T ss_pred HhCCCCCcc
Confidence 578877664
No 77
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.32 E-value=0.0032 Score=40.81 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=58.6
Q ss_pred CCCcEEEEEEEEeecCCC------------------CCeeEEEEEEeCccccC------CcHHHHHHHHHHHHHHHhcCc
Q 033454 4 SFAAMVGDVNIYMNDLDN------------------LELAEVEIMIAEPKSRG------KGLAKDAVLMMMAYAVENFGI 59 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~------------------~~~~~i~~~~v~~~~rg------~Gig~~l~~~~~~~~~~~~~~ 59 (119)
.+|+++|++-+...+.++ ....|++.+.++++.++ .-+...|+..++++|. ..|+
T Consensus 52 ~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~-~~gi 130 (182)
T PF00765_consen 52 DDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFAL-SNGI 130 (182)
T ss_dssp ETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHH-CTT-
T ss_pred ECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHH-HCCC
Confidence 458999999877654321 36789999999887432 2477899999999997 6799
Q ss_pred cEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 60 HVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 60 ~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
..+.+.+ ..++.++++++||....
T Consensus 131 ~~~v~V~---~~~~~r~l~r~G~~~~~ 154 (182)
T PF00765_consen 131 RHIVGVV---DPAMERILRRAGWPVRR 154 (182)
T ss_dssp SEEEEEE---EHHHHHHHHHCT-EEEE
T ss_pred CEEEEEE---ChHHHHHHHHcCCceEE
Confidence 9997766 57899999999999764
No 78
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=97.21 E-value=0.011 Score=39.12 Aligned_cols=79 Identities=8% Similarity=0.046 Sum_probs=58.4
Q ss_pred CCCcEEEEEEEEeecCC------------------CCCeeEEEEEEeCccccCC---c----HHHHHHHHHHHHHHHhcC
Q 033454 4 SFAAMVGDVNIYMNDLD------------------NLELAEVEIMIAEPKSRGK---G----LAKDAVLMMMAYAVENFG 58 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~------------------~~~~~~i~~~~v~~~~rg~---G----ig~~l~~~~~~~~~~~~~ 58 (119)
.+|++||++-+...+.+ ..+.+|++.+.++++++.. + +...|+..+.+++. ..|
T Consensus 61 ~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~-~~G 139 (207)
T PRK13834 61 DSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSM-ANG 139 (207)
T ss_pred CCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHH-HCC
Confidence 56789998876443211 1367999999999885322 2 56789999999996 679
Q ss_pred ccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 59 IHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
+..+.+.+ ++...+++.++|+....
T Consensus 140 i~~~~~v~---~~~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 140 YTEIVTAT---DLRFERILARAGWPMQR 164 (207)
T ss_pred CCEEEEEE---CHHHHHHHHHcCCCeEE
Confidence 99987766 34678899999987643
No 79
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.17 E-value=0.0093 Score=40.35 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=48.5
Q ss_pred CeeEEEEEEeCccccCC--------c--------------------HHHHHHHHHHHHHHHhcCccEEEEeecCCChhHH
Q 033454 23 ELAEVEIMIAEPKSRGK--------G--------------------LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASL 74 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~--------G--------------------ig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~ 74 (119)
+.+|++.+++++++|++ | +...|+..+.+++. ..|+..+++.+ .....
T Consensus 110 ~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~-~~Gi~~~~~v~---~~~l~ 185 (241)
T TIGR03694 110 RIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSS-ANGITHWYAIM---EPRLA 185 (241)
T ss_pred ceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHH-HCCCcEEEEEe---CHHHH
Confidence 57899999999999974 1 56779999999996 67999988777 44688
Q ss_pred HHHHhcCCeee
Q 033454 75 RLFQKLGFEDI 85 (119)
Q Consensus 75 ~~y~k~Gf~~~ 85 (119)
+++.++|+...
T Consensus 186 r~l~r~G~~~~ 196 (241)
T TIGR03694 186 RLLSRFGIQFR 196 (241)
T ss_pred HHHHHhCCceE
Confidence 89999998754
No 80
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.08 E-value=0.0047 Score=37.44 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=48.0
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEee
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKI 66 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~ 66 (119)
..+|++||+....... +.........+|+++..+.|..++..+++++. ..|++.+....
T Consensus 77 ~~~g~~va~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~-~~g~~~~d~g~ 135 (142)
T PF13480_consen 77 YDGGEPVAFALGFRHG----GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAI-ERGLRYFDFGG 135 (142)
T ss_pred EECCEEEEEEEEEEEC----CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHH-HCCCCEEEECC
Confidence 4579999998766655 56777777779999999999999999999997 55888876644
No 81
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=96.91 E-value=0.0018 Score=35.37 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.1
Q ss_pred eeEEEEEEeCccccCCcHHHHHHHHHHHHH
Q 033454 24 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYA 53 (119)
Q Consensus 24 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~ 53 (119)
.+-|+.+.|+|.+|++||+++|++.+.+..
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 356888999999999999999999987763
No 82
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=96.71 E-value=0.0026 Score=46.49 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=42.1
Q ss_pred CccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 33 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 33 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
...+|.+|+|++|++.+.+.|.++ +..+|.+. +-..+...|.|+||+..|
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee-~~~ki~vi---SgiG~ReYy~k~GY~~~g 508 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREE-GAKKILVI---SGIGVREYYRKLGYELDG 508 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhh-ccccEEEE---ecccHHHHHHHhCccccC
Confidence 468999999999999999999755 57777443 456889999999999887
No 83
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=96.66 E-value=0.017 Score=36.62 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=45.0
Q ss_pred CCCCcEEEEEEEEeecC----CCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCc-cEEEE
Q 033454 3 SSFAAMVGDVNIYMNDL----DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGI-HVFRA 64 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~----~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~-~~i~~ 64 (119)
..++++||+++....+- ...+.++|.++.+|++.|+++++--|+.++...+. ..|+ +.++.
T Consensus 85 ~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn-~~gI~qAvyT 150 (162)
T PF01233_consen 85 KSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVN-LQGIWQAVYT 150 (162)
T ss_dssp TTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH-TTT--EEEEE
T ss_pred CCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhh-hcCceeeeee
Confidence 45799999998665432 11267899999999999999999999999988875 4454 34443
No 84
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.54 E-value=0.0076 Score=35.25 Aligned_cols=61 Identities=5% Similarity=0.018 Sum_probs=46.1
Q ss_pred CCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChh
Q 033454 5 FAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 72 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~ 72 (119)
+|...|++.+....+. ....+++-+++.++.||+|++..++..+.+. .+.+...+..+|+.
T Consensus 16 ~e~y~~~aIvt~~~~~-~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d------~~~L~Wrsr~~n~~ 76 (99)
T cd04264 16 SEGYNAAAIVTYEGVN-NGVPYLDKFAVSSSAQGEGTSDALWRRLRRD------FPKLFWRSRKTNPI 76 (99)
T ss_pred eCCceEEEEEeccCCC-CCceEEEEEEEchhhhhcChHHHHHHHHHhh------CCceEEEeCCCCcc
Confidence 3556677766554432 2678999999999999999999999988554 36688888888864
No 85
>PHA01733 hypothetical protein
Probab=96.36 E-value=0.0059 Score=38.28 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=53.4
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|+++|..+... +... +.+..+.+.+ +.-.+ +-...+.....+..+...++.|.-.|...|..++++.+.+||+
T Consensus 54 ~nG~l~aI~Gv~~-d~~~-~vG~pWlV~T-~~v~k--~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~ 128 (153)
T PHA01733 54 PDGSLAGVAGLVE-DMGN-RVGEIWMVCT-PAIEK--NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFK 128 (153)
T ss_pred cCCcEEEEecccc-cccC-CCCceeEEec-HHhHh--CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCce
Confidence 4688888888655 3333 5555555554 22221 3334444444443323477889999999999999999999999
Q ss_pred eechhh
Q 033454 84 DISYSE 89 (119)
Q Consensus 84 ~~~~~~ 89 (119)
.....+
T Consensus 129 f~~~~~ 134 (153)
T PHA01733 129 GLRYVQ 134 (153)
T ss_pred eecccc
Confidence 887533
No 86
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=96.36 E-value=0.0052 Score=43.62 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=42.2
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
..||.||+|+.|++.+...|+++.+-.+|.+.. -......|.|+||+..+
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavIS---GVGtR~YY~klGY~LdG 546 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVIS---GVGTRNYYRKLGYELDG 546 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEe---ccchHHHHHhhCeeecC
Confidence 469999999999999999999888888875433 34567899999999987
No 87
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=96.05 E-value=0.042 Score=33.68 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=49.3
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||.+.+-..+ +....+-++. +|++..+++|+-.+-.-+++|+ +.+++-+++.=...+ ..++--|..|+
T Consensus 46 ~~~kLiav~v~D~l~---~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~-~~~l~y~YLGY~I~~--c~kM~YK~~f~ 118 (128)
T PF04377_consen 46 LDGKLIAVAVVDILP---DGLSAVYTFY-DPDYSKRSLGTYSILREIELAR-ELGLPYYYLGYWIHG--CPKMNYKARFR 118 (128)
T ss_pred eCCeEEEEEEeeccc---chhhheeeee-CCCccccCcHHHHHHHHHHHHH-HcCCCEEeeCeEeCC--CCcccchhcCC
Confidence 478999997643222 1233344444 7999999999999999999997 679998887433333 22334455555
Q ss_pred e
Q 033454 84 D 84 (119)
Q Consensus 84 ~ 84 (119)
+
T Consensus 119 P 119 (128)
T PF04377_consen 119 P 119 (128)
T ss_pred c
Confidence 4
No 88
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.00 E-value=0.19 Score=33.26 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=59.5
Q ss_pred CCCCcEEEEEEEEeecCC------------------CCCeeEEEEEEeCc--c---ccCCc-HHHHHHHHHHHHHHHhcC
Q 033454 3 SSFAAMVGDVNIYMNDLD------------------NLELAEVEIMIAEP--K---SRGKG-LAKDAVLMMMAYAVENFG 58 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~------------------~~~~~~i~~~~v~~--~---~rg~G-ig~~l~~~~~~~~~~~~~ 58 (119)
..+|+++|++.+.+...+ ..+..|.+.+++++ . ..+.. ++..++..+++++. ..|
T Consensus 59 ~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~-~~G 137 (209)
T COG3916 59 TSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYAL-ARG 137 (209)
T ss_pred cCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHH-HcC
Confidence 568999999987654321 12678999998864 2 22233 47789999999997 669
Q ss_pred ccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 59 IHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
+++|.+.+ ...+.++++++|+....
T Consensus 138 ~~~IvtVt---~~~meril~r~Gw~~~r 162 (209)
T COG3916 138 ITGIVTVT---DTGMERILRRAGWPLTR 162 (209)
T ss_pred CceEEEEE---chHHHHHHHHcCCCeEE
Confidence 99997766 56889999999998653
No 89
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=95.98 E-value=0.18 Score=30.96 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=59.9
Q ss_pred CCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCee
Q 033454 5 FAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 84 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~ 84 (119)
.+.++|...+....+ ...+.+-+. +|++|| ++.++-....+|+.+...+..+...+...-.-.+-+.+-+|.+.
T Consensus 46 g~~l~Gi~~v~~i~~---~~vecHa~y-~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~llg~~R 119 (151)
T PF11039_consen 46 GGQLGGIVYVEEIQP---SVVECHAMY-DPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICRLLGARR 119 (151)
T ss_pred ceEEEEEEEEEEEee---eeEEEEeee-ccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhhhhCCce
Confidence 356677776554432 466777766 599998 99999999999998887888777666666666677788899999
Q ss_pred echhhh
Q 033454 85 ISYSEI 90 (119)
Q Consensus 85 ~~~~~~ 90 (119)
++....
T Consensus 120 VG~id~ 125 (151)
T PF11039_consen 120 VGHIDD 125 (151)
T ss_pred eeeHHH
Confidence 996543
No 90
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=95.97 E-value=0.043 Score=35.74 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=34.2
Q ss_pred cEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHh
Q 033454 7 AMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVEN 56 (119)
Q Consensus 7 ~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~ 56 (119)
.+||+.+ ...... ....++++++.|-||++|+|+-|++..-+.++.+
T Consensus 66 h~vGyFS-KEk~s~--~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e 112 (188)
T PF01853_consen 66 HIVGYFS-KEKESW--DNNNLSCILTLPPYQRKGYGRFLIDFSYELSRRE 112 (188)
T ss_dssp EEEEEEE-EESS-T--T-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred eeEEEEE-EEeccc--CCeeEeehhhcchhhhcchhhhhhhhHHHHhhcc
Confidence 5778876 222221 3467899999999999999999999988887644
No 91
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.86 E-value=0.018 Score=42.19 Aligned_cols=60 Identities=23% Similarity=0.467 Sum_probs=44.8
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEE---------eecCCChhHHHHHHhcCCeeech
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRA---------KIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~---------~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
..+.|..+++||+||+-|+|..-+..+.+|..++ -++..+- .+...| -|+++.||+....
T Consensus 240 aaariarvvvhpdyr~dglg~~sv~~a~ewI~eR-riPEmr~rkHlvetiaqmaryn----pffe~~gfkylwd 308 (593)
T COG2401 240 AAARIARVVVHPDYRADGLGQLSVIAALEWIIER-RIPEMRPRKHLVETIAQMARYN----PFFEKVGFKYLWD 308 (593)
T ss_pred hhhheeEEEeccccccCccchhHHHHHHHHHHHh-hChhhhhhhhHHHHHHHHHhcC----chhhhhceeeeee
Confidence 3468999999999999999999999999998744 4443322 122223 4899999998653
No 92
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.079 Score=35.51 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=57.6
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHH-HHhcCC
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRL-FQKLGF 82 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~-y~k~Gf 82 (119)
.+|++||....+.-........+=+...+.|++++.|+|-.|...--+.+. .+|+..|..+-++.|..-.+| ..|+|-
T Consensus 54 ~dg~lVGls~G~pg~r~g~~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~-~~G~tli~WTfDPl~alNA~fNi~KLGa 132 (266)
T COG3375 54 ADGRLVGLSYGYPGGRGGSLYLYSHMLGVREEVKGSGLGVALKMKQRERAL-SMGYTLIAWTFDPLNALNARFNISKLGA 132 (266)
T ss_pred CCCcEEEEEeccCCcCCCceeeeeeehhccccccccchhhhhHHHHHHHHH-hcCeeeEEEecccchhhhhhcchhhhce
Confidence 466899988655522222234556677889999999999999999999996 779999988887777532222 255665
Q ss_pred eeec
Q 033454 83 EDIS 86 (119)
Q Consensus 83 ~~~~ 86 (119)
....
T Consensus 133 ~art 136 (266)
T COG3375 133 IART 136 (266)
T ss_pred eEEE
Confidence 5433
No 93
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=95.39 E-value=0.2 Score=30.21 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=42.2
Q ss_pred CCcEEEEEEEEee-----cCCCC-----CeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHH
Q 033454 5 FAAMVGDVNIYMN-----DLDNL-----ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASL 74 (119)
Q Consensus 5 ~g~~vG~~~~~~~-----~~~~~-----~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~ 74 (119)
.|.++|++-+... +.... +..-+-.+.++++.|++|+|++|++.++.. +...... +-++.-.....
T Consensus 17 ~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~--e~~~p~~--~a~DrPS~Kll 92 (120)
T PF05301_consen 17 KGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQE--ENVSPHQ--LAIDRPSPKLL 92 (120)
T ss_pred CceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHH--cCCCccc--ceecCCcHHHH
Confidence 4678888865432 33221 121344556679999999999999999775 2333332 22443444556
Q ss_pred HHHHh
Q 033454 75 RLFQK 79 (119)
Q Consensus 75 ~~y~k 79 (119)
.|.+|
T Consensus 93 ~Fl~K 97 (120)
T PF05301_consen 93 SFLKK 97 (120)
T ss_pred HHHHH
Confidence 65554
No 94
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=95.28 E-value=0.16 Score=34.42 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=50.1
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||.+.+-..+ +....+-. .-+|++-.+++|+-.+-.-+++|+ +.|++-+++.=...+- .++--|.-|+
T Consensus 151 ~~g~LiaVav~D~l~---d~lSAVY~-FyDPd~~~~SLG~~~iL~qI~~ak-~~gl~y~YLGY~I~~c--~kM~YK~~f~ 223 (240)
T PRK01305 151 GDGKLVAVAVTDVLD---DGLSAVYT-FYDPDEEHRSLGTFAILWQIELAK-RLGLPYVYLGYWIKGS--RKMNYKARFR 223 (240)
T ss_pred eCCeEEEEEEEeccC---CceeeEEE-eeCCCccccCCHHHHHHHHHHHHH-HcCCCeEeeeEEECCC--CcccccccCC
Confidence 478999998753332 13334444 447999999999999999999997 7799999885444442 2333444444
Q ss_pred e
Q 033454 84 D 84 (119)
Q Consensus 84 ~ 84 (119)
+
T Consensus 224 P 224 (240)
T PRK01305 224 P 224 (240)
T ss_pred c
Confidence 4
No 95
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=95.24 E-value=0.053 Score=37.49 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=34.9
Q ss_pred CcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHh
Q 033454 6 AAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVEN 56 (119)
Q Consensus 6 g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~ 56 (119)
-.+||+.+ ..... .....++.+++.|-||++|+|+-|++..-+..+.+
T Consensus 140 ~h~vGYFS-KEK~s--~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~E 187 (290)
T PLN03238 140 SHIVGYFS-KEKVS--AEDYNLACILTLPPYQRKGYGKFLISFAYELSKRE 187 (290)
T ss_pred cEEEEEec-eeccc--cCCCcEEEEEecChhhhccHhHhHHHHHhHHhhcc
Confidence 36788765 22211 12356889999999999999999999988887533
No 96
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=95.00 E-value=0.14 Score=36.10 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=58.9
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCe
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 83 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~ 83 (119)
.+|++||.+.+.... +.........++++++.+-+..|+..++++|. +.|++.........|....+|=++.||+
T Consensus 203 ~~g~~va~~l~~~~~----~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~-~~G~~~fDfG~s~~~~G~~~FK~~~G~~ 277 (330)
T TIGR03019 203 GDGVVASAVLSFYFR----DEVLPYYAGGLREARDVAANDLMYWELMRRAC-ERGLRVFDFGRSKRGTGPFKFKKNWGFE 277 (330)
T ss_pred CCCCEEEEEEEEEeC----CEEEEEeccChHHHHhhChHHHHHHHHHHHHH-HCCCcEEEcCCCCCCCccHHHHhcCCCe
Confidence 578888887655443 23332233456899999999999999999997 5599998887666666777888889999
Q ss_pred eec
Q 033454 84 DIS 86 (119)
Q Consensus 84 ~~~ 86 (119)
.+.
T Consensus 278 ~~~ 280 (330)
T TIGR03019 278 PQP 280 (330)
T ss_pred ecc
Confidence 876
No 97
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=94.85 E-value=0.21 Score=28.31 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=25.9
Q ss_pred CccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 58 GIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
.++.++-.|...|..+++|.+.+|++...
T Consensus 55 ~Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 55 QYPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred HhhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 36779999999999999999999999754
No 98
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.74 E-value=0.056 Score=40.10 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=41.9
Q ss_pred ccCCcHHHHHHHHHHHHHHHhcCccEEEEeecC--CChhHHHHHHhcCCeeec
Q 033454 36 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE--SNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 36 ~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~--~n~~~~~~y~k~Gf~~~~ 86 (119)
.-|+++=++++..+++.|. ..|+..|++.=.+ .|...-.||+++||+..+
T Consensus 498 VlgRkvE~~l~~~~~e~A~-~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~ 549 (574)
T COG3882 498 VLGRKVEQRLMNSLEEQAL-SEGINTIRGYYIPTEKNAPVSDFYERMGFKLKG 549 (574)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCcceeeeEecccccCCcHHHHHHHhcccccc
Confidence 4488999999999999997 6699999885544 488899999999999554
No 99
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=94.60 E-value=0.09 Score=30.76 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=36.6
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChh
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 72 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~ 72 (119)
...+++-+++.++.||+|++..++..+.+. .+.+...+..+|+.
T Consensus 33 ~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d------~~~L~Wrsr~~n~~ 76 (99)
T cd04265 33 GVPYLDKFAVSSSAQGEGTGEALWRRLRRD------FPKLFWRSRSTNPI 76 (99)
T ss_pred CceEEEEEEEchhhhhcChHHHHHHHHHhh------CCceEEEeCCCCcc
Confidence 678999999999999999999999988654 24577888888864
No 100
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=94.47 E-value=0.033 Score=40.15 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.9
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHHHHHHHH
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 54 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 54 (119)
....++.+++.|-||++|+|+-|++.--+..+
T Consensus 259 ~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr 290 (396)
T KOG2747|consen 259 ENYNLACILTLPPYQRKGYGKLLIDFSYELSR 290 (396)
T ss_pred cccceeeeeecChhhhcccchhhhhhhhhhhc
Confidence 44568899999999999999999988777654
No 101
>PHA00432 internal virion protein A
Probab=94.30 E-value=0.2 Score=31.00 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=27.8
Q ss_pred CccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 58 GIHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
.++.|.-.|...|..+++|.+.+||+....
T Consensus 92 ~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 92 QYPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hhhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 578899999999999999999999999875
No 102
>PLN03239 histone acetyltransferase; Provisional
Probab=94.07 E-value=0.1 Score=37.10 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=34.0
Q ss_pred cEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHh
Q 033454 7 AMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVEN 56 (119)
Q Consensus 7 ~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~ 56 (119)
.+||+.+ ... .......++.+++.|-||++|+|+-|++..-+..+.+
T Consensus 199 h~vGYFS-KEK--~s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~E 245 (351)
T PLN03239 199 HPVGYYS-KEK--YSDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKE 245 (351)
T ss_pred EEEEEee-ecc--cCCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhc
Confidence 5677765 222 1112346899999999999999999999888877533
No 103
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.77 E-value=0.076 Score=41.24 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=28.3
Q ss_pred eeEEEEEEeCccccCCcHHHHHHHHHHHHHH
Q 033454 24 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 54 (119)
Q Consensus 24 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 54 (119)
-+.|..++|||+|++.|||++.++.+.+|..
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 4789999999999999999999999999863
No 104
>PTZ00064 histone acetyltransferase; Provisional
Probab=93.66 E-value=0.13 Score=38.29 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=33.8
Q ss_pred cEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHH
Q 033454 7 AMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVE 55 (119)
Q Consensus 7 ~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~ 55 (119)
.+||+.+ .... ......++++++.|-||++|+|+-|+...-+..+.
T Consensus 370 HiVGYFS-KEK~--S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrr 415 (552)
T PTZ00064 370 HIVGYFS-KEKV--SLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLK 415 (552)
T ss_pred EEEEEec-cccc--CcccCceEEEEecchhhhcchhhhhhhhhhhhhhh
Confidence 6777765 2221 11234689999999999999999999988877653
No 105
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=93.56 E-value=0.65 Score=32.52 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=63.3
Q ss_pred CCCCcEEEEEEEEeecCCC---CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHH---h-----cC-ccEEEEeecCCC
Q 033454 3 SSFAAMVGDVNIYMNDLDN---LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVE---N-----FG-IHVFRAKIGESN 70 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~---~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~---~-----~~-~~~i~~~~~~~n 70 (119)
...+.+|+.+++....... .-.+.|..+-+.+-|..-|+-..|+++++-.+++ + .+ --.+.+++.+..
T Consensus 175 vYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~YSFD 254 (304)
T PF11124_consen 175 VYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVYSFD 254 (304)
T ss_pred EEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEeeecc
Confidence 3568899999887654332 1346788888888899999999999999655442 1 12 225667889999
Q ss_pred hhHHHHHHhcCCeeec
Q 033454 71 GASLRLFQKLGFEDIS 86 (119)
Q Consensus 71 ~~~~~~y~k~Gf~~~~ 86 (119)
....++.++.||+.+.
T Consensus 255 ~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 255 KDMKKTLKKKGFKKIS 270 (304)
T ss_pred HHHHHHHHHCCCeeee
Confidence 9999999999999887
No 106
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=93.50 E-value=0.19 Score=36.07 Aligned_cols=58 Identities=21% Similarity=0.162 Sum_probs=39.2
Q ss_pred EEEEEEEEeecCCC-CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeec
Q 033454 8 MVGDVNIYMNDLDN-LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 67 (119)
Q Consensus 8 ~vG~~~~~~~~~~~-~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~ 67 (119)
.+|+..++..+... .-...|+.+.+.|-||++|+|+++++.+........ ..+.+++.
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p--~v~DiTVE 258 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEP--TVLDITVE 258 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccCC--ceeEEEec
Confidence 46666665554332 245678888888999999999999999996544333 33444443
No 107
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=93.23 E-value=0.13 Score=29.87 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.5
Q ss_pred CeeEEEEEEeCccccCCcHHHHHH
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAV 46 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~ 46 (119)
+.+|++.++++|+||+......|+
T Consensus 77 ~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 77 RVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred cEEEeehheECHhHCCChHHHHHh
Confidence 678999999999999987776654
No 108
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=93.09 E-value=0.096 Score=38.52 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=33.3
Q ss_pred cEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHH
Q 033454 7 AMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 54 (119)
Q Consensus 7 ~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 54 (119)
.+||+.+ .... ......++++++.|-||++|+|+.|++..-+..+
T Consensus 292 h~vGyFS-KEk~--s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr 336 (450)
T PLN00104 292 HMVGYFS-KEKH--SEEDYNLACILTLPPYQRKGYGKFLIAFSYELSK 336 (450)
T ss_pred EEEEEec-cccc--CcCCCceEEEEecchhhhcchhheehhheehhhh
Confidence 6788865 2221 1123468999999999999999999988877765
No 109
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=92.52 E-value=0.45 Score=30.69 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=43.0
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
-.++++.+.|.|+.+|.||+..+ ..+..-+ ++++.+.-+.+| ..+..+.+++++
T Consensus 84 LVaElGLygVRpDLEGlGi~hs~-r~m~PvL-q~LgVPF~FGtV---R~al~~Hv~R~~ 137 (196)
T PF02474_consen 84 LVAELGLYGVRPDLEGLGISHSM-RVMYPVL-QELGVPFGFGTV---RHALRNHVERLC 137 (196)
T ss_pred eEEEEEEEEeeccccccccchhh-hhhhhHH-HhcCCCeecccc---hHHHHHHHHHHh
Confidence 46899999999999999999987 4555555 478888877777 456777777776
No 110
>PRK14852 hypothetical protein; Provisional
Probab=91.78 E-value=1.6 Score=35.47 Aligned_cols=87 Identities=10% Similarity=0.114 Sum_probs=66.1
Q ss_pred CCcEEEEEEEEeecCCC-------------------CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEe
Q 033454 5 FAAMVGDVNIYMNDLDN-------------------LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAK 65 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~-------------------~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~ 65 (119)
.+++||..++...+... ...++++.++++++.|.+-+--.+++.+..|+. ..+..-+.+.
T Consensus 83 ~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~-~~~~dd~~i~ 161 (989)
T PRK14852 83 YHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSM-MSEVDDILVT 161 (989)
T ss_pred CCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHH-HcCCCeEEEE
Confidence 36677777665554421 256899999999988888888888899988875 5688888888
Q ss_pred ecCCChhHHHHHH-hcCCeeechhhhhhhhc
Q 033454 66 IGESNGASLRLFQ-KLGFEDISYSEIFKEVT 95 (119)
Q Consensus 66 ~~~~n~~~~~~y~-k~Gf~~~~~~~~~~~~~ 95 (119)
| |+.-..||+ -+||+..+....++.++
T Consensus 162 V---nPkH~~FY~r~l~f~~ig~~r~~p~Vn 189 (989)
T PRK14852 162 V---NPKHVKFYTDIFLFKPFGEVRHYDTVD 189 (989)
T ss_pred E---CcchHHHHHHHhCCccccccccCCCCC
Confidence 8 555578998 68999998776666654
No 111
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=91.63 E-value=0.53 Score=32.19 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechhhhh
Q 033454 39 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 91 (119)
Q Consensus 39 ~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~ 91 (119)
.+-...++..+.+.|. +.++.+|.+.+..++ ...|.+.||..++..+.+
T Consensus 20 ~~~~~~~~~~~~~~a~-~~~~~ki~~~~~~~~---~~~~~~~g~~~e~~i~~~ 68 (266)
T TIGR03827 20 GNDVEALIPDLDALAK-KEGYTKIIAKVPGSD---KPLFEERGYLEEAKIPGY 68 (266)
T ss_pred CccHHHHHHHHHHHHH-HcCCcEEEEEccHHH---HHHHHHCCCeEEEecccc
Confidence 3457889999999996 669999999997776 689999999999876544
No 112
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=1.8 Score=29.55 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=48.0
Q ss_pred CCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCee
Q 033454 5 FAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 84 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~ 84 (119)
+|++|+.+.. |-..+....+-. ..+|++...++|+-.+-.=+.+|+ +.+++.+++.=...+ +.++--|.-|.+
T Consensus 159 ~G~LvAVavt---DvL~dGlSsVY~-FydPd~s~~SLGt~~iL~~I~~aq-~~~l~yvYLGYwI~~--c~KM~YKa~f~P 231 (253)
T COG2935 159 EGKLVAVAVT---DVLPDGLSSVYT-FYDPDMSKRSLGTLSILDQIAIAQ-RLGLPYVYLGYWIKG--CPKMNYKARFSP 231 (253)
T ss_pred CCcEEEEEee---ecccCcceeEEE-EeCCChhhhcchHHHHHHHHHHHH-HhCCCeEEEEEEECC--ccccCcccccCh
Confidence 6788887653 222213333444 447999999999999999999996 779999998544444 223344444443
No 113
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=90.59 E-value=1 Score=32.25 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=27.9
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHHHHHHH--HHhcCccEEEEeec
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYA--VENFGIHVFRAKIG 67 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~--~~~~~~~~i~~~~~ 67 (119)
...+++.+.++|+||+.|.|+.|-..-.=+. +.+.=-+++.++..
T Consensus 120 G~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~viAElr 166 (342)
T PF04958_consen 120 GCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRVIAELR 166 (342)
T ss_dssp TSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEEEEE--
T ss_pred CCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchheeeecc
Confidence 5689999999999999999998766443332 11222245555543
No 114
>PHA00771 head assembly protein
Probab=90.32 E-value=2.8 Score=25.69 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=49.4
Q ss_pred eeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechhhhhhh
Q 033454 24 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKE 93 (119)
Q Consensus 24 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 93 (119)
..+.+-+. +|++||+ ++ ++-....+|+.+...+..+...+...-.-.+-+.+-+|.+.++....+-.
T Consensus 62 ~~ecHa~y-~P~fRG~-ya-~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~lig~rRVG~id~a~~ 128 (151)
T PHA00771 62 TFDCHAMY-LPEIRGF-SK-EIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFK 128 (151)
T ss_pred EEEEEeee-Cccccch-hH-HHHHHHHHHHhcCCceeEEEEecccccccchhhhhhhCCceeeeHHHHhc
Confidence 34555544 5999988 55 88888899988777888777766666666677788999999997544333
No 115
>PHA02769 hypothetical protein; Provisional
Probab=89.85 E-value=0.63 Score=27.97 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHH--HhcCccEEEEeecCCChhHHHHHHhcCCeeechh
Q 033454 43 KDAVLMMMAYAV--ENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 88 (119)
Q Consensus 43 ~~l~~~~~~~~~--~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 88 (119)
-.|+..+...+. +..|+..++..-+++. |..+|.|.||+.++.+
T Consensus 95 d~lvnfl~~l~~k~~~dg~evlwtlgfpdh--snaly~kagfk~vg~t 140 (154)
T PHA02769 95 DHLVNFLNDLAEKLKKDGFEVLWTLGFPDH--SNALYKKAGFKLVGQT 140 (154)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCCCc--chhHHhhhhhhHhccc
Confidence 345555444332 2347777666555555 6788999999998854
No 116
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=89.72 E-value=3.6 Score=26.73 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=57.7
Q ss_pred CCCCcEEEEEEEEeecCCC-------------------------CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhc
Q 033454 3 SSFAAMVGDVNIYMNDLDN-------------------------LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENF 57 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~-------------------------~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~ 57 (119)
+.+|++++.+++..-+... ...+|||.+... +.|.+..++..+..++. ..
T Consensus 41 ~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~-~~ 115 (179)
T PF12261_consen 41 DSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLA-QQ 115 (179)
T ss_pred cCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHH-HC
Confidence 5678888888866544211 135788887763 58899999999999885 66
Q ss_pred CccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 58 GIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
|++-+ +++.+....+++.|+|.....
T Consensus 116 g~~w~---vfTaT~~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 116 GFEWV---VFTATRQLRNLFRRLGLPPTV 141 (179)
T ss_pred CCCEE---EEeCCHHHHHHHHHcCCCcee
Confidence 87755 566788999999999999875
No 117
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=88.81 E-value=3 Score=26.84 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=46.5
Q ss_pred cEEEEEEEEeec-CCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHh-cCCee
Q 033454 7 AMVGDVNIYMND-LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQK-LGFED 84 (119)
Q Consensus 7 ~~vG~~~~~~~~-~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k-~Gf~~ 84 (119)
..-|.+.+.... ......+++.-+++.++.||.|++..+...+.+.. +.+...+..+|+.--.+++| -|+-.
T Consensus 70 ~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~------p~L~Wrsr~~n~~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 70 DYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDF------PKLFWRSREDNPNNKWYFERSDGSFK 143 (170)
T ss_dssp TSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH-------SSEEEEEETT-TTHHHHHHH-SEEEE
T ss_pred CceEEEEEEecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHhc------cceEEEecCCCCcccEEEEeeEEEEE
Confidence 333455545433 23336899999999999999999999999885432 33778888888755555544 34443
No 118
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=88.62 E-value=0.89 Score=32.66 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=40.3
Q ss_pred CCCCcEEEEEEEEeec----CCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHH
Q 033454 3 SSFAAMVGDVNIYMND----LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 54 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~----~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 54 (119)
....++||+++..+.. ..-.+.++|.++.+|++.|+++++--|++++-..+.
T Consensus 142 ~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvn 197 (421)
T KOG2779|consen 142 KSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVN 197 (421)
T ss_pred ecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhh
Confidence 3467999999754432 111267999999999999999999999999877664
No 119
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=87.42 E-value=1.5 Score=31.30 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.1
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHH
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLM 48 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~ 48 (119)
...+|+.+.++|+||+.|.|+.|-+.
T Consensus 116 G~sElctLfL~p~~R~~~~G~LLSr~ 141 (335)
T TIGR03243 116 GSSELCTLFLDPDYRKGGNGRLLSRS 141 (335)
T ss_pred CCeeeEEEEECHHHcCCCchhhHHHH
Confidence 56799999999999999988877553
No 120
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=87.36 E-value=0.2 Score=35.67 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=29.4
Q ss_pred cEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHH
Q 033454 7 AMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAY 52 (119)
Q Consensus 7 ~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~ 52 (119)
.+||+.+ .+..+.+...++++.+.|-||++|+|+.|++.--..
T Consensus 248 h~vGyFS---KEK~S~~~yNLaCILtLP~yQRrGYG~lLIdFSY~L 290 (395)
T COG5027 248 HLVGYFS---KEKESEQDYNLACILTLPPYQRRGYGKLLIDFSYLL 290 (395)
T ss_pred eeeeeec---hhhcccccCceEEEEecChhHhcccceEeeeeeeec
Confidence 4677754 222222345688888899999999999987655443
No 121
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=86.76 E-value=1.7 Score=31.06 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.0
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHH
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLM 48 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~ 48 (119)
...+++.+.++|+||+.|.|+.|-+.
T Consensus 116 G~SElctLfL~p~~R~~~~G~LLSr~ 141 (336)
T TIGR03244 116 GYSELCTLFLDPDYRKGGNGRLLSKS 141 (336)
T ss_pred CCeeeEEEEECHHHcCCcchhhHHHH
Confidence 46799999999999999988876543
No 122
>PRK10456 arginine succinyltransferase; Provisional
Probab=86.59 E-value=1.7 Score=31.12 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=21.9
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHH
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLM 48 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~ 48 (119)
...+++.+.++|+||+.|.|+.|-+.
T Consensus 118 G~sElctLfl~p~~R~~~~G~LLSr~ 143 (344)
T PRK10456 118 GSSELCTLFLDPDWRKEGNGYLLSKS 143 (344)
T ss_pred CCceeEEEEECHHHcCCCchhHHHHH
Confidence 46799999999999999988876543
No 123
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=86.52 E-value=1.8 Score=30.88 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=21.9
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHH
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLM 48 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~ 48 (119)
...+|+.+.++|+||+.|.|+.|-+.
T Consensus 117 G~sElctLfL~p~~R~~~~G~lLSr~ 142 (336)
T TIGR03245 117 GSSLLCSFYVDPRLRKTEAAELLSRA 142 (336)
T ss_pred CCeeeEEEEECHHHcCCCchhHHHHH
Confidence 56799999999999999988876543
No 124
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=85.55 E-value=3.6 Score=30.03 Aligned_cols=96 Identities=8% Similarity=0.092 Sum_probs=59.1
Q ss_pred CcEEEEEEEEeecCCCCCeeEEEEEEeCccccC-CcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHH--HhcCC
Q 033454 6 AAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRG-KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF--QKLGF 82 (119)
Q Consensus 6 g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg-~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y--~k~Gf 82 (119)
|.--|.+.+........+..++.-++|.++.|| -|++..++.-+-+..- +.+....+-+| .+.++| ++-|+
T Consensus 382 gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~fP-----~eL~WRSR~~N-~vNkwYf~rSvg~ 455 (495)
T COG5630 382 GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEFP-----NELFWRSRHNN-QVNKWYFARSVGY 455 (495)
T ss_pred ccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHHhCc-----HhhhhhhcccC-cchheeeehhheh
Confidence 445566666666555557899999999999999 9999999888866543 23444455555 456666 23333
Q ss_pred eeechhhhhhhhccccccchhHHHHHHHHHh
Q 033454 83 EDISYSEIFKEVTLELPVENAKREELLVLTA 113 (119)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (119)
-.. .+.+..++..+...-.-.++++
T Consensus 456 lk~------~~~~wKlFw~G~~~lr~~qri~ 480 (495)
T COG5630 456 LKQ------KQDHWKLFWNGKRALRHFQRIQ 480 (495)
T ss_pred hhc------cCCcceEEecChHhhhhHHHHH
Confidence 221 1234456666644444444443
No 125
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=84.48 E-value=4.5 Score=24.08 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=35.8
Q ss_pred CeeEEEEEEeCccccC-CcHHHHHHHHHHHHHHHhcCccE-EEEeecCCChhH
Q 033454 23 ELAEVEIMIAEPKSRG-KGLAKDAVLMMMAYAVENFGIHV-FRAKIGESNGAS 73 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg-~Gig~~l~~~~~~~~~~~~~~~~-i~~~~~~~n~~~ 73 (119)
..+++.-+++.+.-|| .|++.-+...+.+ ..++ +...+..+|+.-
T Consensus 38 ~v~yLdKFav~~~~~gl~gv~D~vf~~m~~------~fp~~L~Wrsr~~n~~n 84 (108)
T cd04266 38 KIAYLDKFAVLPKAQGSDGIADILFNAMLD------GFPNELIWRSRKDNPVN 84 (108)
T ss_pred CceEEEEEEEccccccccchHHHHHHHHHH------cCCCceEEEeCCCCccc
Confidence 6789999999999997 8999999888765 3343 777888888643
No 126
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.34 E-value=2 Score=29.07 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=23.9
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHHHHHH
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAY 52 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~ 52 (119)
....|-.++|+++.|+.|.|.+|++++++.
T Consensus 107 e~lcILDFyVheS~QR~G~G~~lfdyMl~k 136 (264)
T KOG4601|consen 107 EALCILDFYVHESEQRSGNGFKLFDYMLKK 136 (264)
T ss_pred CCceEEEEEeehhhhhcCchHHHHHHHHHh
Confidence 344555666779999999999999998764
No 127
>PRK00756 acyltransferase NodA; Provisional
Probab=83.30 E-value=4.7 Score=26.00 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=38.9
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhc
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 80 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~ 80 (119)
-.++++.+.+.||..|.||+..+ ..+.--+ ++++.+.-+.++. .++.+-.+++
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvL-q~LgVPF~FGtVR---~al~~Hv~R~ 136 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVL-QELGVPFAFGTVR---HALRNHVERL 136 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHH-HhcCCCeecccch---HHHHHHHHHH
Confidence 56899999999999999999887 4554544 4778887766664 4555555554
No 128
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=76.52 E-value=4.7 Score=31.13 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=46.7
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechhh
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 89 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 89 (119)
.+.-.-++++++++-++.-++ ..|...-.+.|..+..+-++||.++||..++..+
T Consensus 826 ~~a~D~~~~k~m~~vll~tL~-aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e 880 (891)
T KOG3698|consen 826 MDASDAHPMKKMIQVLLVTLA-ANGSRGAFLTVAIDDIERQKFYSELGLTDLGLSE 880 (891)
T ss_pred cccccchHHHHHHHHHHHHHH-hcCCcceeEEechhHHHHHHHHHHhchHHHhHhh
Confidence 344467899999999988775 5699999999999999999999999999887544
No 129
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=75.46 E-value=15 Score=26.70 Aligned_cols=74 Identities=12% Similarity=0.035 Sum_probs=48.4
Q ss_pred CCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 2 VSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 2 ~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
+..+|++||+......+ ++.+-.++....++.+. .-..+.-..+++|. +.|++++..-+...+..+ .|
T Consensus 256 A~~~g~~Va~aL~l~~~----~~LyGRYwG~~~~~~~L-HFe~cYYq~Ie~aI-~~Gl~~f~~GaqGEHK~~------RG 323 (370)
T PF04339_consen 256 ARRDGQPVAFALCLRGD----DTLYGRYWGCDEEIPFL-HFELCYYQGIEYAI-EHGLRRFEPGAQGEHKIA------RG 323 (370)
T ss_pred EEECCeEEEEEEEEEeC----CEEEEeeecccccccCc-chHHHHHHHHHHHH-HcCCCEEECCcchhHHHH------cC
Confidence 34589999998766664 44444444433444433 23455778999998 569999988776655444 48
Q ss_pred Ceeech
Q 033454 82 FEDISY 87 (119)
Q Consensus 82 f~~~~~ 87 (119)
|.++..
T Consensus 324 f~P~~t 329 (370)
T PF04339_consen 324 FEPVPT 329 (370)
T ss_pred Cccccc
Confidence 988764
No 130
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=74.44 E-value=23 Score=27.20 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=45.4
Q ss_pred CCCCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecC
Q 033454 1 MVSSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 68 (119)
Q Consensus 1 v~~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~ 68 (119)
+++.+|+++|++++....... ...+...=.+|+-= +|+..-|+..++.+++ +.|++++.+...+
T Consensus 397 ~~~~~g~VvaFa~l~~~~~~~--~~SlDlMR~sp~ap-~g~mdfLf~~li~~aK-e~G~~~fsLgmAp 460 (538)
T COG2898 397 AVDNEGEVVAFANLMPTGGKE--GYSLDLMRRSPDAP-NGTMDFLFSELILWAK-EEGYQRFSLGMAP 460 (538)
T ss_pred EEcCCCCeEEEEeecccCCcc--eeEEEeeecCCCCC-chHHHHHHHHHHHHHH-HcCCeEEecCCcc
Confidence 356789999999987755422 23333333345543 8999999999999997 6699999875544
No 131
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=72.14 E-value=7.4 Score=23.94 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=37.2
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
-|=||-|+|+++++.+.+.+. ..+.+.....|..|-.--.|.|-..-.
T Consensus 5 IDGQGGGiG~~iv~~lr~~~~-----~~~eI~AlGTNa~AT~~MlKaGA~~gA 52 (131)
T PF12953_consen 5 IDGQGGGIGKQIVEKLRKELP-----EEVEIIALGTNAIATSAMLKAGANEGA 52 (131)
T ss_pred EeCCCChhHHHHHHHHHHhCC-----CCcEEEEEehhHHHHHHHHHcCCCCcc
Confidence 477999999999888866543 236677788899888888898887644
No 132
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=70.36 E-value=5.9 Score=23.01 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=13.9
Q ss_pred CChhHHHHHHhcCCeeec
Q 033454 69 SNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 69 ~n~~~~~~y~k~Gf~~~~ 86 (119)
+=.+|++||+++||+...
T Consensus 10 D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 10 DMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred cHHHHHHHHHHhCceecC
Confidence 335899999999998643
No 133
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=70.25 E-value=7.6 Score=25.73 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHHHhc-CccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 40 GLAKDAVLMMMAYAVENF-GIHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 40 Gig~~l~~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
|+|..++..+++...... ...++.+.........+++..++||....+
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEe
Confidence 889999999998875443 456788888877888899999999998875
No 134
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=66.93 E-value=6.3 Score=22.90 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.2
Q ss_pred hhHHHHHHhcCCeeech
Q 033454 71 GASLRLFQKLGFEDISY 87 (119)
Q Consensus 71 ~~~~~~y~k~Gf~~~~~ 87 (119)
.+|++||+.+||+....
T Consensus 13 ~~s~~FY~~LGf~~~~~ 29 (113)
T cd08356 13 AESKQFYQALGFELEWE 29 (113)
T ss_pred HHHHHHHHHhCCeeEec
Confidence 48899999999998764
No 135
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=66.79 E-value=7.1 Score=23.42 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=19.3
Q ss_pred ccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 59 IHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
+..+.+.|. +-.+|++||.++||+....
T Consensus 4 i~Hi~i~v~-Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 4 MDNVGIVVR-DLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeEEEEeC-CHHHHHHHHHHcCCEEccc
Confidence 445555444 4458899999999987543
No 136
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=63.59 E-value=44 Score=23.17 Aligned_cols=56 Identities=11% Similarity=-0.044 Sum_probs=37.0
Q ss_pred CCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEE
Q 033454 5 FAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRA 64 (119)
Q Consensus 5 ~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~ 64 (119)
+|+++|++.+...... +...+...-.+++ -=+|+...|+..+++.++ ..|++.+.+
T Consensus 189 dgki~af~~~~~~~~~--~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~-~~g~~~lnL 244 (299)
T PF09924_consen 189 DGKIVAFAIGSPLGGR--DGWSIDFEKADPD-APKGIYEFLNVEFAEHLK-AEGVEYLNL 244 (299)
T ss_dssp TTEEEEEEEEEEEE-T--TEEEEEEEEE-TT--STTHHHHHHHHHHHHS---TT--EEE-
T ss_pred CCcEEEEEEEEEccCC--ccEEEEEEecCCC-CCCcHHHHHHHHHHHhhh-hCCceEEEc
Confidence 8999999998776621 3455555555555 357999999999999986 458888764
No 137
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=62.23 E-value=33 Score=22.44 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=45.8
Q ss_pred EEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCCh---hHHHHHHhcCCeeech
Q 033454 28 EIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNG---ASLRLFQKLGFEDISY 87 (119)
Q Consensus 28 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~---~~~~~y~k~Gf~~~~~ 87 (119)
+.++..|+-.=-+.-++-+-.++++|-+++.+.++.+.....|. +..+-+.=+||+.+..
T Consensus 103 ~l~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp 165 (191)
T KOG4387|consen 103 SLFFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRP 165 (191)
T ss_pred cEEEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCC
Confidence 34455577777778888899999999988999999998777765 4555566678988764
No 138
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=58.01 E-value=18 Score=23.05 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCccEEEEe----ecCCChhHHHHHHhcCCeeech
Q 033454 46 VLMMMAYAVENFGIHVFRAK----IGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 46 ~~~~~~~~~~~~~~~~i~~~----~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
++.++++|+ ++|+++|-+- ....-....++++..||+..+.
T Consensus 43 veEiieFak-~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 43 VEEIIEFAK-RMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred HHHHHHHHH-HcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 577888986 7899988641 1122234567788999998764
No 139
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=56.90 E-value=96 Score=26.23 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=45.3
Q ss_pred CCCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecC
Q 033454 3 SSFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 68 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~ 68 (119)
+.+|+++|++++..... +...+...-.+|+- -+|+..-|+..++.+++ +.|++.+.+...+
T Consensus 427 d~~G~i~af~s~~p~~~---~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k-~~G~~~~sLg~AP 487 (1094)
T PRK02983 427 DADGQVVALLSFVPWGR---RGLSLDLMRRSPDA-PNGVIELMVAELALEAE-SLGITRISLNFAV 487 (1094)
T ss_pred CCCCeEEEEEEEeeeCC---CCEEEEecccCCCC-CCCHHHHHHHHHHHHHH-HcCCCEEEechhh
Confidence 45799999999877432 23445554445664 69999999999999996 6699999875544
No 140
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=56.15 E-value=33 Score=23.27 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHHHHHHHhc-CccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 39 KGLAKDAVLMMMAYAVENF-GIHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 39 ~Gig~~l~~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
-|+|..++..+++...+.+ +..++.+.-...-...+.+..+++|....+
T Consensus 92 AGMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 92 AGMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAE 141 (226)
T ss_pred eCCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeee
Confidence 3889999999998876554 456776655555557788889999998765
No 141
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=55.73 E-value=11 Score=22.07 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=14.7
Q ss_pred CChhHHHHHHhcCCeeec
Q 033454 69 SNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 69 ~n~~~~~~y~k~Gf~~~~ 86 (119)
+=.+|.+||+.+||+...
T Consensus 10 Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 10 DLEKSTAFYTALGFEFNP 27 (124)
T ss_pred CHHHHHHHHHHCCCEEcc
Confidence 345899999999999764
No 142
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=54.72 E-value=12 Score=21.71 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=15.7
Q ss_pred CChhHHHHHHhcCCeeechh
Q 033454 69 SNGASLRLFQKLGFEDISYS 88 (119)
Q Consensus 69 ~n~~~~~~y~k~Gf~~~~~~ 88 (119)
+=.+|++||.++||+.....
T Consensus 12 Dl~~s~~FY~~lG~~~~~~~ 31 (120)
T cd08350 12 DLDATEAFYARLGFSVGYRQ 31 (120)
T ss_pred CHHHHHHHHHHcCCEEEecC
Confidence 34589999999999986543
No 143
>PRK04531 acetylglutamate kinase; Provisional
Probab=54.12 E-value=43 Score=24.67 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=40.1
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhc
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 80 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~ 80 (119)
...++.-+++.++-||.|++.-++..+.+.. +.+...+..+|+.-..+|+|.
T Consensus 309 ~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~------~~L~Wrsr~~n~~~~Wyf~~s 360 (398)
T PRK04531 309 GGPYLDKFAVLDDARGEGLGRAVWNVMREET------PQLFWRSRHNNTINKFYYAES 360 (398)
T ss_pred CceEeEEEEEccchhhcChHHHHHHHHHhhC------CceEEEcCCCCCccceeeecc
Confidence 5688999999999999999999998886542 458888888887544444443
No 144
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=52.49 E-value=46 Score=19.42 Aligned_cols=44 Identities=2% Similarity=0.046 Sum_probs=35.8
Q ss_pred CeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChh
Q 033454 23 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 72 (119)
Q Consensus 23 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~ 72 (119)
..+++.-+.+.++-++.|++..+...+.+. .+.+...+..+|+.
T Consensus 32 ~v~~LdkFav~~~~~~~gv~D~vf~~i~~d------~~~L~Wrsr~~n~~ 75 (98)
T cd03173 32 SIPYLDKFAVSDHLWLNNVTDNIFNLIRKD------FPSLLWRVRENDAN 75 (98)
T ss_pred CCEEEEEEEEcccccccCHHHHHHHHHHhh------CCeeEEEeCCCCCc
Confidence 578999999999999999999998887544 34677888888764
No 145
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=52.15 E-value=32 Score=21.99 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=21.4
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
+++|.-|+|.+++ +.+|++++.+.+ +|+.-..-.+.+|-+.+++
T Consensus 123 ~d~R~ygigaqIL--------~dLGV~~~rLLt--nnp~k~~~L~g~gleV~~~ 166 (169)
T PF00925_consen 123 EDLRDYGIGAQIL--------RDLGVKKMRLLT--NNPRKYVALEGFGLEVVER 166 (169)
T ss_dssp S----THHHHHHH--------HHTT--SEEEE---S-HHHHHHHHHTT--EEEE
T ss_pred cccccHHHHHHHH--------HHcCCCEEEECC--CChhHHHHHhcCCCEEEEE
Confidence 4556666665552 246788776644 5677667777778776653
No 146
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=51.29 E-value=50 Score=19.54 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEeecCCChhHH---HHHHhcCCeeech
Q 033454 41 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASL---RLFQKLGFEDISY 87 (119)
Q Consensus 41 ig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~---~~y~k~Gf~~~~~ 87 (119)
--++-+-.++++|-+.+++.++.+.+..+..... +-+.=+||+.+..
T Consensus 38 ~~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~ 87 (108)
T PF02100_consen 38 GSKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTP 87 (108)
T ss_dssp --SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE--
T ss_pred ccHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCC
Confidence 4677788888999767899999998887776533 3444467777664
No 147
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=50.59 E-value=42 Score=24.16 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=38.3
Q ss_pred CcEEEEEEEEeec----CCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHH
Q 033454 6 AAMVGDVNIYMND----LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 54 (119)
Q Consensus 6 g~~vG~~~~~~~~----~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 54 (119)
-++||+++..... ....+++++.++.++.+.|++.+.--|+..+-..+.
T Consensus 143 ~klVaFIsa~p~~v~vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n 195 (451)
T COG5092 143 QKLVAFISAKPHLVSVRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRAN 195 (451)
T ss_pred ceeEEEEecceeEEEEcccccccceEEEEEEehhhhhCccchHHHHHHHHhhh
Confidence 4789998754432 112267999999999999999999999999887774
No 148
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=48.58 E-value=32 Score=20.56 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=17.7
Q ss_pred EEEEeecCCChhHHHHHHh-cCCeeech
Q 033454 61 VFRAKIGESNGASLRLFQK-LGFEDISY 87 (119)
Q Consensus 61 ~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 87 (119)
.+.+.| .+=.+|.+||++ +||+....
T Consensus 3 Hi~i~V-~D~e~s~~FY~~vLGf~~~~~ 29 (136)
T cd08342 3 HVEFYV-GNAKQLASWFSTKLGFEPVAY 29 (136)
T ss_pred EEEEEe-CCHHHHHHHHHHhcCCeEEEe
Confidence 344444 344588899988 99987654
No 149
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=48.54 E-value=27 Score=24.01 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=30.2
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 68 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~ 68 (119)
+...|+--|...+..++++|. +.|++.+++.+++
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~vT~yaFS 74 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCK-DWGIGALTAYAFS 74 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEeecc
Confidence 556788889999999999997 7799999999988
No 150
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=47.10 E-value=1.2e+02 Score=22.70 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=41.6
Q ss_pred cccCCcHHHHHHHHHHHHHHHhcCccEEEE---------------eecCCChhHHHHHHhcCCeeechhhhhhh
Q 033454 35 KSRGKGLAKDAVLMMMAYAVENFGIHVFRA---------------KIGESNGASLRLFQKLGFEDISYSEIFKE 93 (119)
Q Consensus 35 ~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~---------------~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~ 93 (119)
+|-++.+..-.+..+.+++.+. ..-.|.+ .....|.+.++.+..+|++..+.+..+.+
T Consensus 78 dy~~~~l~~~~~k~l~~y~k~~-~~l~i~idP~l~~~~~~~~~~~~~~~~n~~~i~~l~~lG~k~~g~t~~~~~ 150 (418)
T COG2348 78 DYSNQELLDYFIKELKKYAKSK-RALFIKIDPYLVYQQFDLGGEIIENYNNLAIIKLLKDLGYKHSGFTKGLDD 150 (418)
T ss_pred cccchHHHHHHHHHHHHHHhhc-cceEEEeccchhhhcccCCCccccCcchHHHHHHHHHhhhhhcCcccccCc
Confidence 8999999999999999998743 2222211 11145789999999999999987654444
No 151
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=47.00 E-value=22 Score=20.30 Aligned_cols=30 Identities=13% Similarity=0.416 Sum_probs=19.7
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeeechhh
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDISYSE 89 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~~ 89 (119)
+..+.+.|...+ ++.+||.+ +||+......
T Consensus 2 l~Hi~i~v~d~~-~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDLE-KAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCHH-HHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCHH-HHHHHHHHHhCCcEEeeec
Confidence 445555554444 78888866 8999876433
No 152
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=46.46 E-value=23 Score=20.33 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=16.5
Q ss_pred cEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 60 HVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 60 ~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
..+.+.|.. =.+|.+||..+||+...
T Consensus 5 ~hv~l~v~D-l~~s~~FY~~lGl~~~~ 30 (113)
T cd07267 5 AHVRFEHPD-LDKAERFLTDFGLEVAA 30 (113)
T ss_pred EEEEEccCC-HHHHHHHHHHcCCEEEE
Confidence 344444432 34788899889988754
No 153
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=46.11 E-value=34 Score=23.25 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCccEEEE---eecCCChhHHHHHHhcCCeeech
Q 033454 48 MMMAYAVENFGIHVFRA---KIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 48 ~~~~~~~~~~~~~~i~~---~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
.+++- .+.+|.++|-+ ++..-|....++|++.||+.+..
T Consensus 110 A~~~A-L~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 110 AAVDG-LAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHH-HHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 33443 35779999876 34455779999999999998774
No 154
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=44.99 E-value=12 Score=20.11 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=11.4
Q ss_pred eCccccCCcHHHHH
Q 033454 32 AEPKSRGKGLAKDA 45 (119)
Q Consensus 32 v~~~~rg~Gig~~l 45 (119)
.+|+||++.+++.|
T Consensus 52 HhPqYrn~~iA~LL 65 (67)
T PF03376_consen 52 HHPQYRNQQIAALL 65 (67)
T ss_pred cCchhcCHHHHHHh
Confidence 48999999988754
No 155
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=44.83 E-value=4.6 Score=22.14 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=18.7
Q ss_pred CccEEEEeecCCChhHHHHHHhcCCee
Q 033454 58 GIHVFRAKIGESNGASLRLFQKLGFED 84 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k~Gf~~ 84 (119)
.+..|--.+..+.....+|.+++||.-
T Consensus 36 si~elA~~~~vS~sti~Rf~kkLG~~g 62 (77)
T PF01418_consen 36 SISELAEKAGVSPSTIVRFCKKLGFSG 62 (77)
T ss_dssp -HHHHHHHCTS-HHHHHHHHHHCTTTC
T ss_pred cHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 444444456667788999999999984
No 156
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.49 E-value=33 Score=23.29 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=31.8
Q ss_pred CccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 33 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 33 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
.|...|+--|...+..++++|. +.|++.+++.+++..
T Consensus 26 l~~~~GH~~G~~~~~~i~~~c~-~~GI~~lT~YaFS~E 62 (230)
T PRK14837 26 LSFFEGHKEGLKRAKEIVKHSL-KLGIKYLSLYVFSTE 62 (230)
T ss_pred CchhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeehh
Confidence 3667788899999999999996 789999999988763
No 157
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=43.75 E-value=36 Score=23.06 Aligned_cols=36 Identities=11% Similarity=0.309 Sum_probs=31.4
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
|...|+--|...+..++++|. +.|++.+++.+++..
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~-~~GI~~lT~yaFStE 55 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCA-NLGVECLTLYAFSTE 55 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeehh
Confidence 667788899999999999996 779999999988764
No 158
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=43.32 E-value=70 Score=18.93 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 44 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 44 ~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
.....+++.+. ..|.+.+.+.....+..+.+..++.|.+.++.
T Consensus 66 ~~~~~~v~~~~-~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 66 DKVPEIVDEAA-ALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHH-HHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHH-HcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 34445555554 55999999999999999999999999998863
No 159
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=42.95 E-value=26 Score=19.87 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=11.8
Q ss_pred hhHHHHHHh-cCCeee
Q 033454 71 GASLRLFQK-LGFEDI 85 (119)
Q Consensus 71 ~~~~~~y~k-~Gf~~~ 85 (119)
..|.+||++ +||+..
T Consensus 12 ~~s~~FY~~~lG~~~~ 27 (112)
T cd07238 12 EAAAAFYADVLGLDVV 27 (112)
T ss_pred HHHHHHHHHhcCceEE
Confidence 477889986 898865
No 160
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.67 E-value=59 Score=22.01 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=26.3
Q ss_pred HhcCccEEEE---eecCCChhHHHHHHhcCCeeech
Q 033454 55 ENFGIHVFRA---KIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 55 ~~~~~~~i~~---~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
+.++.+++.+ ++..-|.....|++..||+.+..
T Consensus 114 ~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 114 NALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred HhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 3567777765 56778999999999999998863
No 161
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=42.19 E-value=26 Score=21.49 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEeCccccCCcHHHHHHHHHHH
Q 033454 29 IMIAEPKSRGKGLAKDAVLMMMA 51 (119)
Q Consensus 29 ~~~v~~~~rg~Gig~~l~~~~~~ 51 (119)
.+.+|||++|.-+.+++.+++-.
T Consensus 59 IILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 59 IILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEEeCCCcchHHHHHHHHHHhcc
Confidence 45668999999999999888766
No 162
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.15 E-value=40 Score=22.96 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=31.8
Q ss_pred CccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 33 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 33 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
.+...|+--|...+..++++|. +.|++.+++++++..
T Consensus 23 ~~~~~GH~~G~~~l~~i~~~~~-~lgIk~lTvYaFS~e 59 (233)
T PRK14841 23 LPRIKGHQRGAEVLHNTVKWSL-ELGIKYLTAFSFSTE 59 (233)
T ss_pred CchhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEeeeHh
Confidence 3667788899999999999997 779999999988763
No 163
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=41.67 E-value=33 Score=19.56 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=16.6
Q ss_pred cEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 60 HVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 60 ~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
..+.+.+. +=.+|.+||..+||+...
T Consensus 4 ~hv~l~v~-d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 4 DHFALEVP-DLEVARRFYEAFGLDVRE 29 (112)
T ss_pred eEEEEecC-CHHHHHHHHHHhCCcEEe
Confidence 34444332 235788899889998754
No 164
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=41.41 E-value=36 Score=23.46 Aligned_cols=48 Identities=15% Similarity=0.003 Sum_probs=32.5
Q ss_pred eeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEE-EEeecCCCh
Q 033454 24 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVF-RAKIGESNG 71 (119)
Q Consensus 24 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i-~~~~~~~n~ 71 (119)
.+-|+...|.+..|++|+++.|+.-+.+...-..-+.+. .+.+.+++.
T Consensus 183 ~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~~g~~isr~~iAfs~PTdd 231 (257)
T KOG3014|consen 183 ICGISRIWVSSLRRRKGIASLLLDVARCNFVYGEVISREEIAFSDPTDD 231 (257)
T ss_pred EeeeEEEEeehhhhhhhhHHHHHHHHHHhhhhhcccchhheEecCCCch
Confidence 467888889999999999999999887653212122222 245566664
No 165
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=41.38 E-value=20 Score=22.08 Aligned_cols=16 Identities=31% Similarity=0.411 Sum_probs=13.9
Q ss_pred hhHHHHHHhcCCeeec
Q 033454 71 GASLRLFQKLGFEDIS 86 (119)
Q Consensus 71 ~~~~~~y~k~Gf~~~~ 86 (119)
.+|.+||..+||+.-.
T Consensus 15 ~~S~~Fy~alGfk~Np 30 (133)
T COG3607 15 EASKAFYTALGFKFNP 30 (133)
T ss_pred HHHHHHHHHhCcccCC
Confidence 5899999999999754
No 166
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.37 E-value=48 Score=22.72 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=31.3
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
+...|+--|..-+..++++|. +.|++.+++.+++..
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~-~lgI~~vTvYaFS~e 64 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASL-EYGLKNISLYAFSTE 64 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeehh
Confidence 667788899999999999997 779999999888763
No 167
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=39.07 E-value=66 Score=21.28 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=32.8
Q ss_pred CccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechhh
Q 033454 33 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 89 (119)
Q Consensus 33 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 89 (119)
.+++|.-|+|.+++ +.+|++.|.+.+ +|+.-..-.+..|-+.+.+.+
T Consensus 123 ~~D~R~ygigAqIL--------~dLGI~~irLLt--nnp~K~~~l~~~Gi~vverv~ 169 (193)
T COG0807 123 PADERDYGIGAQIL--------KDLGIKKIRLLT--NNPRKIYGLEGFGINVVERVP 169 (193)
T ss_pred CchHHHHHHHHHHH--------HHcCCcEEEEec--CChHHHHHHHhCCceEEEEee
Confidence 35677777777773 256899988866 477666677888877776544
No 168
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=38.97 E-value=50 Score=22.25 Aligned_cols=36 Identities=6% Similarity=0.188 Sum_probs=31.0
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
+...|+--|..-+..++++|. +.|++.+++.+++..
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~-~~gI~~lTvyaFS~e 56 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCL-ELGVKEVTLYAFSTE 56 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEeechh
Confidence 567788899999999999996 779999999887763
No 169
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.89 E-value=49 Score=22.51 Aligned_cols=36 Identities=6% Similarity=0.110 Sum_probs=30.9
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
+...|+--|...+..++++|. +.|++.+++.+++..
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~-~~gI~~lTvyaFS~e 60 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCA-NHKLECLTLYAFSTE 60 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHH-HcCCCEEEEeecchh
Confidence 556788889999999999997 779999999888763
No 170
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=38.36 E-value=24 Score=17.35 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=9.5
Q ss_pred CCCCCcEEEEEEE
Q 033454 2 VSSFAAMVGDVNI 14 (119)
Q Consensus 2 ~~~~g~~vG~~~~ 14 (119)
++++|+++|.+..
T Consensus 36 ~d~~~~~~G~is~ 48 (57)
T PF00571_consen 36 VDEDGKLVGIISR 48 (57)
T ss_dssp ESTTSBEEEEEEH
T ss_pred EecCCEEEEEEEH
Confidence 4567888888763
No 171
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=38.23 E-value=36 Score=22.81 Aligned_cols=35 Identities=14% Similarity=0.354 Sum_probs=28.8
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 69 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~ 69 (119)
+...|+.-|..-+..++++|. ..|++.+++.+++.
T Consensus 15 ~~~~Gh~~G~~~l~~i~~~~~-~~gI~~lTvYaFS~ 49 (223)
T PF01255_consen 15 PRSEGHRAGAEKLKEIVEWCL-ELGIKYLTVYAFST 49 (223)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-HCT-SEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEecc
Confidence 455677788999999999997 77999999998874
No 172
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.14 E-value=43 Score=22.92 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=30.4
Q ss_pred CccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCC
Q 033454 33 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 69 (119)
Q Consensus 33 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~ 69 (119)
.+...|+--|...+..++++|. ..|++.+++.+++.
T Consensus 34 ~~~~~GH~~G~~~l~~iv~~c~-~~gI~~vTvYaFS~ 69 (243)
T PRK14829 34 LKRTEGHKAGEPVLFDVVAGAI-EAGVPYLSLYTFST 69 (243)
T ss_pred CChhHHHHHHHHHHHHHHHHHH-HcCCCEEEEeeecc
Confidence 3566788889999999999996 77999999998843
No 173
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=37.68 E-value=50 Score=22.17 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 39 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 39 ~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
+|+|.+-...++-||.++. ++.-..-+.+++.++|+....
T Consensus 121 KGIG~ETaDsILlYa~~rp--------~FVvD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDRP--------VFVVDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcCc--------ccchhHHHHHHHHHhcccccc
Confidence 7999999999999998442 233356789999999999875
No 174
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.48 E-value=50 Score=18.71 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=17.9
Q ss_pred CccEEEEeecCCChhHHHHHH-hcCCeeec
Q 033454 58 GIHVFRAKIGESNGASLRLFQ-KLGFEDIS 86 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~-k~Gf~~~~ 86 (119)
++..+.+.|. +=.++.+||. .+||+...
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~ 31 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIR 31 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEee
Confidence 4555666553 3447788886 48888653
No 175
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=37.26 E-value=54 Score=18.64 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=16.2
Q ss_pred cEEEEeecCCChhHHHHHHh-cCCeeech
Q 033454 60 HVFRAKIGESNGASLRLFQK-LGFEDISY 87 (119)
Q Consensus 60 ~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 87 (119)
..+.+.| .+-..|.+||.+ +||+....
T Consensus 3 ~hv~l~v-~d~~~a~~FY~~~lG~~~~~~ 30 (126)
T cd08346 3 HHVTLIT-RDAQETVDFYTDVLGLRLVKK 30 (126)
T ss_pred ccEEEEc-CChhHhHHHHHHccCCEEeee
Confidence 3444433 333478888875 79887543
No 176
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=37.13 E-value=20 Score=22.26 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=21.0
Q ss_pred CccEEEEeecCCChhHHHHHHhcCCeeechh
Q 033454 58 GIHVFRAKIGESNGASLRLFQKLGFEDISYS 88 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 88 (119)
|+..|...+.. -.++..+++++||+.+++.
T Consensus 9 G~dFvEFa~~~-~~~l~~~~~~lGF~~~a~h 38 (139)
T PF14696_consen 9 GFDFVEFAVPD-AQALAQLFTALGFQPVARH 38 (139)
T ss_dssp EEEEEEEE-SS-TTSCHHHHCCCCEEEECCE
T ss_pred CeEEEEEecCC-HHHHHHHHHHhCcceEEec
Confidence 55666665555 3466778899999999863
No 177
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.10 E-value=46 Score=22.57 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=30.4
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
+...|+--|..-+..++++|. +.|++.+++.+++..
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~lT~yaFS~e 49 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFAA-NNGIEALTLYAFSSE 49 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeeehh
Confidence 456677889999999999996 779999999888763
No 178
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.08 E-value=44 Score=23.08 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=31.3
Q ss_pred CccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 33 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 33 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
.|...|+--|...+..++++|. +.|++.+++.+++..
T Consensus 38 l~~~~GH~~G~~~l~~i~~~c~-~~gI~~lTvyaFS~E 74 (253)
T PRK14832 38 LPRIAGHRQGARTLKELLRCCK-DWGIKALTAYAFSTE 74 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeehh
Confidence 3567788889999999999997 779999999888763
No 179
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.77 E-value=47 Score=22.91 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=30.3
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
+...|+--|...+..++++|. +.|++.+++++++..
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~-~~GIk~lTvYaFS~E 78 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTAL-HLGIEVLTLFAFSTE 78 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeehh
Confidence 456677789999999999997 779999999988763
No 180
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=36.74 E-value=37 Score=18.90 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.5
Q ss_pred hhHHHHHHh-cCCeeech
Q 033454 71 GASLRLFQK-LGFEDISY 87 (119)
Q Consensus 71 ~~~~~~y~k-~Gf~~~~~ 87 (119)
.+|.+||++ +||+....
T Consensus 7 ~~a~~FY~~~lg~~~~~~ 24 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFD 24 (108)
T ss_dssp HHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHhcCCEEEEe
Confidence 478999998 99998874
No 181
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=36.64 E-value=46 Score=19.17 Aligned_cols=27 Identities=7% Similarity=0.356 Sum_probs=16.0
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeeec
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 86 (119)
+..+.+.|.. =.+|.+||.+ +||+...
T Consensus 5 l~hv~l~v~D-l~~s~~FY~~~lG~~~~~ 32 (122)
T cd07265 5 PGHVQLRVLD-LEEAIKHYREVLGLDEVG 32 (122)
T ss_pred EeEEEEEeCC-HHHHHHHHHhccCCEeee
Confidence 3444444432 3477888865 8887654
No 182
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=36.63 E-value=47 Score=23.84 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=31.0
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
+...|+-.|...+..++++|. ++|++.+++.+++..
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~-~lGIk~lTlYAFStE 75 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICI-KLKIKILSVFSFSLL 75 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeehh
Confidence 556688899999999999996 789999999888763
No 183
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=36.58 E-value=57 Score=18.46 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=18.2
Q ss_pred CccEEEEeecCCChhHHHHHHh-cCCeeech
Q 033454 58 GIHVFRAKIGESNGASLRLFQK-LGFEDISY 87 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 87 (119)
++..+.+.+ .+-.++.+||++ +||+....
T Consensus 3 ~l~hi~l~v-~d~~~s~~Fy~~~lG~~~~~~ 32 (125)
T cd07253 3 RIDHVVLTV-ADIEATLDFYTRVLGMEVVRF 32 (125)
T ss_pred ccceEEEEe-cCHHHHHHHHHHHhCceeecc
Confidence 344555545 344478888877 78887643
No 184
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=36.47 E-value=46 Score=20.75 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=18.4
Q ss_pred CccEEEEeecCCChhHHHHHHh-cCCeee
Q 033454 58 GIHVFRAKIGESNGASLRLFQK-LGFEDI 85 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k-~Gf~~~ 85 (119)
++..+.+.|. +=.+|+.||++ +||+..
T Consensus 4 ~i~Hv~i~V~-Dle~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 4 TFSHIGISVP-DLDAAVKFYTEVLGWYLI 31 (162)
T ss_pred eEEEEEEEeC-CHHHHHHHHHHhcCCEEE
Confidence 4555655543 34589999977 899764
No 185
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.15 E-value=60 Score=22.35 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=30.6
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
+...|+--|..-+..++++|. ++|++.+++++++..
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c~-~lgI~~lTvYaFS~e 70 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAAG-ELGIGYLTLFAFSSE 70 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEEEecc
Confidence 456678889999999999996 789999999997765
No 186
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.97 E-value=51 Score=22.57 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=31.1
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
+...|+--|...+..++++|. +.|++.+++.+++..
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~lTvYaFS~E 65 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAP-DLGIGTLTLYAFSSD 65 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEechh
Confidence 566788899999999999997 779999999888763
No 187
>KOG3307 consensus Molybdopterin converting factor subunit 2 [Coenzyme transport and metabolism]
Probab=35.81 E-value=1.1e+02 Score=18.87 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=40.7
Q ss_pred EEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechhh
Q 033454 11 DVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 89 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 89 (119)
|.+..+..........+.+-..+| .+..-++.++..++..+.+++| .+|.++|-.++++..
T Consensus 36 F~GtTRdnfeGk~V~~L~Yeay~p------MA~~~lr~IC~~iR~~wpvkkI------------AvfHRLG~VpvgEsS 96 (150)
T KOG3307|consen 36 FNGTTRDNFEGKDVSNLSYEAYDP------MAYKKLRGICAEIRAEWPVKKI------------AVFHRLGKVPVGESS 96 (150)
T ss_pred eccccccccCCceeeeeehhhhcH------HHHHHHHHHHHHHHhhCchhhh------------hhhhhccCcccCcce
Confidence 333333333333556666665555 6788888888888877776654 578999999988644
No 188
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=35.51 E-value=1.1e+02 Score=18.70 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=30.1
Q ss_pred eEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeec
Q 033454 25 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 67 (119)
Q Consensus 25 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~ 67 (119)
-++|..-| ++-||.....++++.+..-.......+.+.+.+.
T Consensus 7 kyLGs~eV-~~~~G~~~~~~Am~kik~~~~~~~k~~~V~L~IS 48 (127)
T cd01274 7 HYLGSLEI-GELEGTDSTHAAMTKIKESIIDWETIPRVTLDLT 48 (127)
T ss_pred EccceEEc-cCCCCcHHHHHHHHHHHHhhhccCCCCEEEEEEe
Confidence 46888888 8999999999999998655421124556666665
No 189
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.25 E-value=52 Score=18.89 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=16.8
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeeech
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDISY 87 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 87 (119)
+..+.+.|.. -.++.+||.+ +||+....
T Consensus 3 i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~ 31 (125)
T cd07255 3 IGAVTLRVAD-LERSLAFYQDVLGLEVLER 31 (125)
T ss_pred EEEEEEEECC-HHHHHHHHHhccCcEEEEc
Confidence 3445444432 3467888875 78887654
No 190
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=35.23 E-value=1.3e+02 Score=19.71 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=30.6
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechh
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 88 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 88 (119)
+++|.-|+|.+++. .+|++++++.+. |+.-..-...+|.+.++..
T Consensus 122 ~d~R~yGiGAQIL~--------dLGV~~~rLLtn--~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 122 ADERDFSLCADILE--------DLGVKKVRLLTN--NPKKIEILKKAGINIVERV 166 (191)
T ss_pred ccceehhHHHHHHH--------HcCCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 45888888888842 568888877554 5545555667787777644
No 191
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.21 E-value=52 Score=19.95 Aligned_cols=18 Identities=11% Similarity=0.523 Sum_probs=14.0
Q ss_pred CChhHHHHHH-hcCCeeec
Q 033454 69 SNGASLRLFQ-KLGFEDIS 86 (119)
Q Consensus 69 ~n~~~~~~y~-k~Gf~~~~ 86 (119)
+-.+|++||+ .+||+...
T Consensus 12 DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 12 NRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred CHHHHHHHHHHhcCCEEEe
Confidence 3468999995 58998755
No 192
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=34.23 E-value=1.2e+02 Score=19.16 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEee-----------cCCChhHHHHHHhcCCeeec
Q 033454 42 AKDAVLMMMAYAVENFGIHVFRAKI-----------GESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 42 g~~l~~~~~~~~~~~~~~~~i~~~~-----------~~~n~~~~~~y~k~Gf~~~~ 86 (119)
+..+.+.+.+.+. +.|++.+.+.+ -+...++++-..+.|++...
T Consensus 74 Aq~aa~~~a~k~~-~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~ 128 (149)
T PTZ00129 74 AMMAAQDVAARCK-ELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGR 128 (149)
T ss_pred HHHHHHHHHHHHH-HcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 3345566667775 67999999988 46677999999999999764
No 193
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=34.00 E-value=60 Score=18.16 Aligned_cols=29 Identities=21% Similarity=0.372 Sum_probs=19.4
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeeechh
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDISYS 88 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~~ 88 (119)
+..+.+.|.. =.+|..||.. +||+.....
T Consensus 3 l~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~ 32 (138)
T COG0346 3 IHHVTLAVPD-LEASIDFYTDVLGLRLVKDT 32 (138)
T ss_pred eEEEEEeeCC-HhHhHHHHHhhcCCeeeeec
Confidence 3444444443 3589999987 999987643
No 194
>PF05865 Cypo_polyhedrin: Cypovirus polyhedrin protein; InterPro: IPR008464 This family consists of several Cypovirus polyhedrin proteins. Polyhedrin is known to form a crystalline matrix (polyhedra) in infected insect cells [].; PDB: 2OH7_A 2OH5_A 2OH6_A.
Probab=33.95 E-value=1.1e+02 Score=19.70 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=22.2
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEe--CccccCCcHHHHHHH
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIA--EPKSRGKGLAKDAVL 47 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v--~~~~rg~Gig~~l~~ 47 (119)
.+|++||+...+...... +...+..-.+ .|+--.-|-+..+|.
T Consensus 155 ~dgeivgyshyfelphey-nsisl~vsgvhknpssynv~~~hnimd 199 (248)
T PF05865_consen 155 RDGEIVGYSHYFELPHEY-NSISLSVSGVHKNPSSYNVGSPHNIMD 199 (248)
T ss_dssp ETTEEEEEEEEEE--STT----EEEEEEEB---SS--TTSTTTHHH
T ss_pred ccceEeeeeeeeeccccc-ceeEEEeeeeccCCccccccCchhHHH
Confidence 489999999988887666 5555555544 344444444444544
No 195
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.32 E-value=52 Score=23.01 Aligned_cols=36 Identities=8% Similarity=0.255 Sum_probs=29.3
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
+...|+--|..-+..++++|. ++|++.+++++++..
T Consensus 62 ~~~~GH~~G~~~l~~i~~~c~-~lGIk~lTvYaFS~E 97 (275)
T PRK14835 62 QREMGHEFGVQKAYEVLEWCL-ELGIPTVTIWVFSTD 97 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEEEcc
Confidence 444566678899999999997 789999999887764
No 196
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.90 E-value=54 Score=23.23 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=29.3
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 69 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~ 69 (119)
+...|+--|...+..++++|. ++|++.+++++++.
T Consensus 88 ~~~~GH~~G~~~l~~v~~~c~-~lGI~~lTvYaFSt 122 (296)
T PRK14827 88 ARTEGHKMGEAVVIDIACGAI-ELGIKWLSLYAFST 122 (296)
T ss_pred CHhHHHHHHHHHHHHHHHHHH-HcCCCEEEEeeecc
Confidence 456677778899999999996 78999999999844
No 197
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=32.87 E-value=37 Score=18.91 Aligned_cols=38 Identities=3% Similarity=0.028 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 44 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 44 ~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
+|+..+.+.-|.... -.+++.+.+.+..|+..|.+.-=
T Consensus 3 ~LL~~I~~~~Fa~~d-l~LyLDTHP~d~~Al~~y~~~~~ 40 (78)
T PF12652_consen 3 ELLREIQEVSFAVVD-LNLYLDTHPDDQEALEYYNEYSK 40 (78)
T ss_pred HHHHHHHHHhhHHHH-HHHHhcCCCCcHHHHHHHHHHHH
Confidence 344554444332212 34789999999999998876543
No 198
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=32.70 E-value=1.7e+02 Score=20.24 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=38.6
Q ss_pred eeEEEEEEeCccc--cCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 24 LAEVEIMIAEPKS--RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 24 ~~~i~~~~v~~~~--rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
...|.-+..++++ .|..+-.+.+..=+..++ ++|++.|++...+..+.-..+.-++|+-...+
T Consensus 14 ~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k-~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e 78 (298)
T PF02836_consen 14 PIFLRGVNRHQDYPGLGRAMPDEAMERDLELMK-EMGFNAIRTHHYPPSPRFYDLCDELGILVWQE 78 (298)
T ss_dssp EE-EEEEEE-S-BTTTBT---HHHHHHHHHHHH-HTT-SEEEETTS--SHHHHHHHHHHT-EEEEE
T ss_pred EEEEEEEeeCcCcccccccCCHHHHHHHHHHHH-hcCcceEEcccccCcHHHHHHHhhcCCEEEEe
Confidence 3445554444544 344455666666677775 78999999988888889999999999987654
No 199
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=32.45 E-value=69 Score=16.63 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=5.4
Q ss_pred hhHHHHHHhcCCe
Q 033454 71 GASLRLFQKLGFE 83 (119)
Q Consensus 71 ~~~~~~y~k~Gf~ 83 (119)
...+..++++|.+
T Consensus 24 dkVvevlrrlgik 36 (55)
T PF09288_consen 24 DKVVEVLRRLGIK 36 (55)
T ss_dssp HHHHHHHHHS--S
T ss_pred HHHHHHHHHhCCC
Confidence 3444555555554
No 200
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=31.53 E-value=60 Score=20.15 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=15.6
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeee
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDI 85 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~ 85 (119)
+..+.+.|. +=.+|.+||.+ +||+..
T Consensus 4 l~Hv~l~V~-Dl~~s~~FY~~vLGl~~~ 30 (161)
T cd07256 4 LDHFNLRVP-DVDAGLAYYRDELGFRVS 30 (161)
T ss_pred EEEEEEecC-CHHHHHHHHHhccCCEEE
Confidence 344545443 23477888876 788754
No 201
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=30.84 E-value=29 Score=18.27 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=18.0
Q ss_pred ecCCChhHHHHHHhcCCeeec
Q 033454 66 IGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 66 ~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
..++|+.+..|..++|-++..
T Consensus 4 SESDnETA~~FL~RvGr~q~~ 24 (60)
T PF06072_consen 4 SESDNETATEFLRRVGRQQHA 24 (60)
T ss_pred CccccccHHHHHHHHhHHHHH
Confidence 467899999999999998744
No 202
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=30.13 E-value=1.3e+02 Score=18.11 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCccEEEEeecC-----------CChhHHHHHHhcCCeeec
Q 033454 43 KDAVLMMMAYAVENFGIHVFRAKIGE-----------SNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 43 ~~l~~~~~~~~~~~~~~~~i~~~~~~-----------~n~~~~~~y~k~Gf~~~~ 86 (119)
..+.+.+.+.+. ++|++.+.+.+.. ....+++-..+.|++...
T Consensus 49 q~aa~~~~~~~~-~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 49 MQAAGRAAEKAK-ERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHHHH-HcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 345566667775 6799999888755 456889999999999754
No 203
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=29.93 E-value=64 Score=18.40 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=17.4
Q ss_pred EEEEeecCCChhHHHHHHh-cCCeeech
Q 033454 61 VFRAKIGESNGASLRLFQK-LGFEDISY 87 (119)
Q Consensus 61 ~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 87 (119)
.+.+.|. +=.++.+||.+ +||+....
T Consensus 3 hv~l~v~-d~~~~~~fy~~~lG~~~~~~ 29 (128)
T cd07249 3 HIGIAVP-DLEAAIKFYRDVLGVGPWEE 29 (128)
T ss_pred EEEEEeC-CHHHHHHHHHHhhCCCCccc
Confidence 3445443 34578889987 99998653
No 204
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=29.85 E-value=1.7e+02 Score=19.27 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=30.6
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechh
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 88 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 88 (119)
+++|.-|+|.+++. .+|++++.+.+ +|+.-..-...+|.+.++..
T Consensus 125 ~d~R~yGiGAQIL~--------dLGV~~mrLLt--n~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 125 ADERDYTLAADMLK--------ALGVKKVRLLT--NNPKKVEALTEAGINIVERV 169 (197)
T ss_pred ccceehhHHHHHHH--------HcCCCEEEECC--CCHHHHHHHHhCCCEEEEEe
Confidence 45888888888843 56888887655 35544455567888877644
No 205
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=29.78 E-value=65 Score=18.28 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=15.4
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeeec
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 86 (119)
+..+.+.+. +-..+.+||.+ +||+...
T Consensus 4 i~hv~l~v~-d~~~s~~FY~~~lG~~~~~ 31 (120)
T cd08362 4 LRGVGLGVP-DLAAAAAFYREVWGLSVVA 31 (120)
T ss_pred eeEEEEecC-CHHHHHHHHHhCcCcEEEE
Confidence 344444442 23467777776 7777653
No 206
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=29.61 E-value=62 Score=19.65 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=15.8
Q ss_pred CccEEEEeecCCChhHHHHHHh-cCCeee
Q 033454 58 GIHVFRAKIGESNGASLRLFQK-LGFEDI 85 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k-~Gf~~~ 85 (119)
++..+.+.|..- .+|..||.+ +||+..
T Consensus 17 ~i~hv~l~v~Dl-~~a~~FY~~vLG~~~~ 44 (150)
T TIGR00068 17 RLLHTMLRVGDL-DKSLDFYTEVLGMKLL 44 (150)
T ss_pred eEEEEEEEecCH-HHHHHHHHHhcCCEEE
Confidence 445555554433 367778864 788764
No 207
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.57 E-value=74 Score=21.81 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=30.8
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
+...|+--|..-+..++++|. +.|++.+++.+++..
T Consensus 31 ~~~~GH~~G~~~l~~i~~~~~-~~gI~~lT~YaFS~E 66 (242)
T PRK14838 31 ERSFGHQAGAETVHIITEEAA-RLGVKFLTLYTFSTE 66 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeechh
Confidence 556788889999999999996 789999999888763
No 208
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.53 E-value=76 Score=21.95 Aligned_cols=35 Identities=6% Similarity=0.116 Sum_probs=29.4
Q ss_pred ccc-cCCcHHHHHHHHHHHHHHHhcCccEEEEeecCC
Q 033454 34 PKS-RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 69 (119)
Q Consensus 34 ~~~-rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~ 69 (119)
+.. .|+--|...+..++++|. .+|++.+++.+++.
T Consensus 47 ~~~~~GH~~G~~~l~~~~~~~~-~~gIk~lTvYaFS~ 82 (256)
T PRK14828 47 TDVSQGHRAGAAKIGEFLGWCD-ETDVNVVTLYLLST 82 (256)
T ss_pred CchHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEEEh
Confidence 445 677789999999999997 77999999988755
No 209
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=29.12 E-value=69 Score=18.47 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=14.9
Q ss_pred EEEEeecCCChhHHHHHHh-cCCeeec
Q 033454 61 VFRAKIGESNGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 61 ~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 86 (119)
.+.+.|.. =.+|.+||.. +||+...
T Consensus 5 ~v~l~v~D-l~~s~~FY~~~LG~~~~~ 30 (120)
T cd07252 5 YLGVESSD-LDAWRRFATDVLGLQVGD 30 (120)
T ss_pred EEEEEeCC-HHHHHHHHHhccCceecc
Confidence 34444432 2367888866 7887644
No 210
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=29.09 E-value=78 Score=17.75 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=11.9
Q ss_pred hhHHHHHHh-cCCeeech
Q 033454 71 GASLRLFQK-LGFEDISY 87 (119)
Q Consensus 71 ~~~~~~y~k-~Gf~~~~~ 87 (119)
.++.+||.+ +||+....
T Consensus 14 ~~~~~FY~~~lg~~~~~~ 31 (117)
T cd07240 14 ERALEFYTDVLGLTVLDR 31 (117)
T ss_pred HHHHHHHHhccCcEEEee
Confidence 467778877 78776643
No 211
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=29.08 E-value=70 Score=18.26 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=16.2
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeeec
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 86 (119)
+..+.+.|. +=..+.+||.+ +||+...
T Consensus 5 i~hi~l~v~-d~~~~~~Fy~~~lG~~~~~ 32 (121)
T cd07266 5 LGHVELRVT-DLEKSREFYVDVLGLVETE 32 (121)
T ss_pred eeEEEEEcC-CHHHHHHHHHhccCCEEec
Confidence 344555443 33477888866 8887653
No 212
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=28.99 E-value=44 Score=18.57 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=18.9
Q ss_pred EEEEEEeCccccCCcHHHHHHHHHH
Q 033454 26 EVEIMIAEPKSRGKGLAKDAVLMMM 50 (119)
Q Consensus 26 ~i~~~~v~~~~rg~Gig~~l~~~~~ 50 (119)
.--.+.+++|..|+.+.+++.+.+-
T Consensus 46 ~~VIiltD~D~aG~~i~~~~~~~l~ 70 (81)
T cd01027 46 RGVIILTDPDRKGEKIRKKLSEYLS 70 (81)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHhc
Confidence 3345566899999999988877763
No 213
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=28.79 E-value=72 Score=19.35 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=16.1
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeeec
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 86 (119)
+..+.+.|.. =.+|.+||++ +||+...
T Consensus 7 l~Hv~l~v~D-le~s~~FY~~vLGf~~~~ 34 (143)
T cd07243 7 LDHCLLTGED-IAETTRFFTDVLDFYLAE 34 (143)
T ss_pred eCEEEEecCC-HHHHHHHHHHhcCCEEEE
Confidence 4445554433 2477888866 8887543
No 214
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=28.62 E-value=54 Score=18.25 Aligned_cols=17 Identities=35% Similarity=0.428 Sum_probs=14.0
Q ss_pred hhHHHHHHh-cCCeeech
Q 033454 71 GASLRLFQK-LGFEDISY 87 (119)
Q Consensus 71 ~~~~~~y~k-~Gf~~~~~ 87 (119)
.+|.+||++ +||+....
T Consensus 10 ~~s~~FY~~~lg~~~~~~ 27 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWE 27 (112)
T ss_pred HHHHHHHHhccCeEEEEE
Confidence 589999999 99997653
No 215
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.57 E-value=89 Score=21.53 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=28.1
Q ss_pred ccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 36 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 36 ~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
..|+--|..-+..++++|. ..|++.+++.+++..
T Consensus 45 ~~Gh~~G~~~l~~~l~~c~-~~GI~~vTvYaFS~e 78 (251)
T PRK14830 45 IAGHKAGMDTVKKITKAAS-ELGVKVLTLYAFSTE 78 (251)
T ss_pred hhhHHHHHHHHHHHHHHHH-HcCCCEEEEEEEehh
Confidence 3477788889999999996 779999999887653
No 216
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=28.50 E-value=1.7e+02 Score=18.99 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHHHHHhcCccEEEEeecCCC--hhHHHHHHhcCCeeech
Q 033454 39 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESN--GASLRLFQKLGFEDISY 87 (119)
Q Consensus 39 ~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n--~~~~~~y~k~Gf~~~~~ 87 (119)
.-.--++++.+++.++ ..|...+.+.-.+.. ....+.++..||.....
T Consensus 18 ~~T~P~vv~avv~~l~-~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 18 ATTHPEVVRAVVEMLK-EAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred ccCCHHHHHHHHHHHH-HcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 3344578888899886 567775555443333 47889999999998753
No 217
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=28.46 E-value=1.2e+02 Score=22.15 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=28.4
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
++.|.-|+|.+++ +.+|+++|++.+ |+.-..-.+.+|.+.+.+
T Consensus 319 ~d~R~y~igaqIL--------~~Lgv~~irLlT---np~K~~~L~~~Gi~V~~~ 361 (367)
T PRK14019 319 VDYRTYGIGAQIL--------RDLGVGKMRLLS---SPRKFPSMSGFGLEVTGY 361 (367)
T ss_pred cccceehHHHHHH--------HHcCCCeEEECC---CcHHHHhhhhCCcEEEEE
Confidence 4566666666653 356888888876 555555567788887653
No 218
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=28.25 E-value=1.6e+02 Score=20.12 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHH
Q 033454 38 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRL 76 (119)
Q Consensus 38 g~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~ 76 (119)
.-|+|+..+...+..+....+.+.+.+.+++.|....++
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~ 49 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGY 49 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhH
Confidence 568999988888776666678888888899888654443
No 219
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.98 E-value=79 Score=17.91 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=10.4
Q ss_pred hhHHHHHHh-cCCeee
Q 033454 71 GASLRLFQK-LGFEDI 85 (119)
Q Consensus 71 ~~~~~~y~k-~Gf~~~ 85 (119)
.+|.+||++ +||+..
T Consensus 13 ~~s~~FY~~~lg~~~~ 28 (125)
T cd07241 13 ERMKAFYVTYFGATSN 28 (125)
T ss_pred HHHHHHHHHHhCCEee
Confidence 477788866 688753
No 220
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=27.62 E-value=1.6e+02 Score=18.27 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=33.5
Q ss_pred HHHH-HHHHHHHHHHHhcCccEEEEeecC-----------CChhHHHHHHhcCCeeec
Q 033454 41 LAKD-AVLMMMAYAVENFGIHVFRAKIGE-----------SNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 41 ig~~-l~~~~~~~~~~~~~~~~i~~~~~~-----------~n~~~~~~y~k~Gf~~~~ 86 (119)
++.+ +.+.+.+.+. ++|++.+.+.+.. ....+++-..+.|++...
T Consensus 53 yAAq~aae~~~~~~~-~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 53 YAAMQAAEKAAEDAK-EKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHHHHHHH-HcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 4444 5566667775 6799999888766 456899999999999764
No 221
>PRK11478 putative lyase; Provisional
Probab=27.58 E-value=90 Score=18.00 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=17.2
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeeec
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 86 (119)
+..+.+.| ++=.+|.+||.+ +||+...
T Consensus 7 i~hv~l~v-~D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 7 VHHIAIIA-TDYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ecEEEEEc-CCHHHHHHHHHHHhCCEecc
Confidence 44554544 344578899954 8998753
No 222
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.52 E-value=1.1e+02 Score=17.58 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=15.5
Q ss_pred cEEEEeecCCChhHHHHHHhc----CCeeec
Q 033454 60 HVFRAKIGESNGASLRLFQKL----GFEDIS 86 (119)
Q Consensus 60 ~~i~~~~~~~n~~~~~~y~k~----Gf~~~~ 86 (119)
..+.+.+. +=.++.+||.+. ||+...
T Consensus 3 ~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~ 32 (128)
T cd07242 3 HHVELTVR-DLERSRAFYDWLLGLLGFEEVK 32 (128)
T ss_pred ceEEEEeC-CHHHHHHHHHHHHhhcCCEEEE
Confidence 34444442 334677888775 887654
No 223
>PRK12303 tumor necrosis factor alpha-inducing protein; Reviewed
Probab=27.28 E-value=1.5e+02 Score=18.33 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=32.0
Q ss_pred cCccEEEEeecCCChhHHHHHHhcCCeeechhhhhhhhc
Q 033454 57 FGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVT 95 (119)
Q Consensus 57 ~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~ 95 (119)
++..++-+++.+.|.....+.+..||...+-.+.+..+.
T Consensus 122 mnvdrlgiyinpnneevfalvrargfdkdalseglhkms 160 (192)
T PRK12303 122 MNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMS 160 (192)
T ss_pred hcchheeeeeCCCcHHHHHHHHHhcCCHHHHhhhHHhcc
Confidence 577889999999999999999999999877655555543
No 224
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=27.23 E-value=1.1e+02 Score=18.10 Aligned_cols=28 Identities=7% Similarity=0.216 Sum_probs=17.4
Q ss_pred CccEEEEeecCCChhHHHHHHh-cCCeeec
Q 033454 58 GIHVFRAKIGESNGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 86 (119)
++..+.+.| .+-..|++||.+ +||....
T Consensus 4 ~i~hv~l~V-~dl~~s~~FY~~~lG~~~~~ 32 (131)
T cd08364 4 GLSHITLIV-KDLNKTTAFLQNIFNAREVY 32 (131)
T ss_pred cEeEEEEEe-CCHHHHHHHHHHHhCCeeEE
Confidence 455555555 344578888865 8887643
No 225
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=27.10 E-value=1.7e+02 Score=21.62 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=32.9
Q ss_pred CccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechhh
Q 033454 33 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 89 (119)
Q Consensus 33 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 89 (119)
.+++|.-|+|.+++ +.+|++++.+.+ .|+.-+.-.+.+|.+.+++.+
T Consensus 310 ~~D~RdygigAqIL--------~dLGV~~irLLT--Nnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 310 KEDERDYAAAFQIL--------KALGIEKVRLLT--NNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred CccceeeeHHHHHH--------HHcCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 35677777777773 255888887655 577666677889999887543
No 226
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=26.98 E-value=97 Score=18.07 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=9.7
Q ss_pred hHHHHHHh-cCCeeec
Q 033454 72 ASLRLFQK-LGFEDIS 86 (119)
Q Consensus 72 ~~~~~y~k-~Gf~~~~ 86 (119)
++.+||.+ +||+...
T Consensus 14 ~s~~FY~~~lG~~~~~ 29 (134)
T cd08348 14 AMVRFYRDVLGFTVTD 29 (134)
T ss_pred HHHHHHHHhcCCEEEe
Confidence 66677765 7776543
No 227
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=26.55 E-value=1.5e+02 Score=20.59 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=35.0
Q ss_pred EEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 27 VEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 27 i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
++..-+.|.|--.|+++..++....|+-.++|-+.|++...+.-
T Consensus 146 lgs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAG 189 (259)
T COG0623 146 LGSERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAG 189 (259)
T ss_pred ccceeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeeccc
Confidence 33333459999999999999999999888889888887665544
No 228
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.29 E-value=1.1e+02 Score=17.53 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=10.6
Q ss_pred hhHHHHHHh----cCCeeec
Q 033454 71 GASLRLFQK----LGFEDIS 86 (119)
Q Consensus 71 ~~~~~~y~k----~Gf~~~~ 86 (119)
.+|.+||++ +||+...
T Consensus 12 ~~s~~FY~~~f~~lg~~~~~ 31 (123)
T cd07262 12 ERARAFYDAVLAPLGIKRVM 31 (123)
T ss_pred HHHHHHHHHHHhhcCceEEe
Confidence 467777776 4777654
No 229
>PF01526 DDE_Tnp_Tn3: Tn3 transposase DDE domain; InterPro: IPR002513 Proteins containing this domain include transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from Escherichia coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalytic performance of numerous transposases [].; GO: 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=26.08 E-value=1.3e+02 Score=22.21 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechhhhhhhhccccccchh
Q 033454 42 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVENA 103 (119)
Q Consensus 42 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~~ 103 (119)
+.-+++-++..- ....+..+++.+...+.....+..-+||+..++...+.+..+..+....
T Consensus 153 a~yvlDgLl~~~-t~~~~~~~~tDThG~s~~~Fal~~llG~~f~PRi~~~~~~~Ly~~~~~~ 213 (388)
T PF01526_consen 153 AHYVLDGLLRNE-TDLQPDEHYTDTHGYSDVVFALFHLLGFRFAPRIRDLKDQKLYRPDPPS 213 (388)
T ss_pred HHHHHHHHHhcC-CCCCceeeecCccchhhHHHHHHHhcCCccccCccchhhceeecccccc
Confidence 455666666653 3567889999999999999999999999999987777776555554433
No 230
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=25.46 E-value=87 Score=19.46 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=15.6
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeeech
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDISY 87 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~~ 87 (119)
+..+.+.|. +-..|.+||++ +||+....
T Consensus 2 l~HI~i~V~-Dle~s~~FY~~~LG~~~~~~ 30 (157)
T cd08347 2 LHGVTLTVR-DPEATAAFLTDVLGFREVGE 30 (157)
T ss_pred cccEEEEeC-CHHHHHHHHHHhcCCEEEee
Confidence 334444332 22477888855 58876543
No 231
>PRK10291 glyoxalase I; Provisional
Probab=25.29 E-value=69 Score=18.72 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.5
Q ss_pred ChhHHHHHHh-cCCeeec
Q 033454 70 NGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 70 n~~~~~~y~k-~Gf~~~~ 86 (119)
=..|+.||.+ +||+...
T Consensus 7 le~s~~FY~~~LG~~~~~ 24 (129)
T PRK10291 7 LQRSIDFYTNVLGMKLLR 24 (129)
T ss_pred HHHHHHHHHhccCCEEEE
Confidence 3589999966 9999764
No 232
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=25.25 E-value=59 Score=14.30 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=5.8
Q ss_pred CCCcEEEEEE
Q 033454 4 SFAAMVGDVN 13 (119)
Q Consensus 4 ~~g~~vG~~~ 13 (119)
.+++++|.+.
T Consensus 31 ~~~~~~g~i~ 40 (49)
T smart00116 31 EEGRLVGIVT 40 (49)
T ss_pred CCCeEEEEEE
Confidence 3456666664
No 233
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.09 E-value=24 Score=24.37 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=22.3
Q ss_pred cCccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 57 FGIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 57 ~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
+.+..+--.+..+.....||.+|+||.--.
T Consensus 47 ~si~~lA~~~~vS~aTi~Rf~kkLGf~gf~ 76 (292)
T PRK11337 47 TALKDIAEALAVSEAMIVKVAKKLGFSGFR 76 (292)
T ss_pred cCHHHHHHHhCCChHHHHHHHHHcCCCCHH
Confidence 344555556777888999999999998544
No 234
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=24.90 E-value=1.6e+02 Score=17.43 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=37.0
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcC-ccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFG-IHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~-~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
+.--.=|+...+++.+.+++..... +..-++.+....+.|..+-+++|=+...
T Consensus 26 KHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 26 KHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp EE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred EeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 4444567888899999988865544 8888899999999999999999988765
No 235
>PF13592 HTH_33: Winged helix-turn helix
Probab=24.79 E-value=1.1e+02 Score=15.64 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=14.6
Q ss_pred CChhHHHHHHhcCCeeec
Q 033454 69 SNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 69 ~n~~~~~~y~k~Gf~~~~ 86 (119)
+.....++..++||....
T Consensus 23 s~~~v~~lL~r~G~s~~k 40 (60)
T PF13592_consen 23 SPSGVYRLLKRLGFSYQK 40 (60)
T ss_pred cHHHHHHHHHHcCCcccc
Confidence 346788999999999765
No 236
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=24.77 E-value=1.9e+02 Score=22.61 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=30.9
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechhh
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 89 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 89 (119)
++.|.-|+|.++ + +.+|+++|++.+ .|+.-+.-.+.+|.+.+++.+
T Consensus 334 ~D~RdYgigAQI-------L-~dLGI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 334 ADLRNYGVGAQI-------L-NDLGIKRLRLIT--NNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred ccceehhHHHHH-------H-HHcCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 445555555555 2 356888887755 577777778899999887543
No 237
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.51 E-value=67 Score=17.90 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=14.4
Q ss_pred ChhHHHHHHh-cCCeeech
Q 033454 70 NGASLRLFQK-LGFEDISY 87 (119)
Q Consensus 70 n~~~~~~y~k-~Gf~~~~~ 87 (119)
-.++.+||.+ +||+....
T Consensus 9 ~~~~~~fY~~~lG~~~~~~ 27 (119)
T cd07263 9 QDKALAFYTEKLGFEVRED 27 (119)
T ss_pred HHHHHHHHHhccCeEEEEe
Confidence 3578899987 99998764
No 238
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=24.46 E-value=1.4e+02 Score=18.30 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=18.6
Q ss_pred cCccEEEEeecCCChhHHHHHHh-cCCeeec
Q 033454 57 FGIHVFRAKIGESNGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 57 ~~~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 86 (119)
.++..+.+.|. +=.++.+||++ +||+...
T Consensus 8 ~~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~ 37 (154)
T cd07237 8 QGLGHVVLATP-DPDEAHAFYRDVLGFRLSD 37 (154)
T ss_pred CccCEEEEEeC-CHHHHHHHHHHccCCEEEE
Confidence 35566655553 44577888865 8887643
No 239
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=24.24 E-value=1.9e+02 Score=18.15 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=24.4
Q ss_pred eeEEEEEEeCccccCCcHHHHHHHHHHHHH
Q 033454 24 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYA 53 (119)
Q Consensus 24 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~ 53 (119)
.-++|.+-| ++.+|..+..++++.+....
T Consensus 7 vkyLGsveV-~~~kG~~v~~~A~rki~~~~ 35 (148)
T cd01212 7 LGYLGSVEV-LAHKGNGVLCQAMRKIVGEY 35 (148)
T ss_pred eEecceEEe-cCCCCcHHHHHHHHHHHHHH
Confidence 356888888 89999999999999997643
No 240
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=23.70 E-value=1e+02 Score=22.07 Aligned_cols=32 Identities=9% Similarity=0.263 Sum_probs=26.7
Q ss_pred EEEeCccccCCcHHHHHHHHHHHHHHHhcCcc
Q 033454 29 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIH 60 (119)
Q Consensus 29 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~ 60 (119)
.++++..++.-|+|.++...+.+.++..+.-+
T Consensus 255 ~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAP 286 (324)
T COG0022 255 LVIVHEAPKTGGIGAEIAALIAEEAFDYLDAP 286 (324)
T ss_pred EEEEEeccccCChHHHHHHHHHHHHHHhhcCc
Confidence 45678999999999999999999998766444
No 241
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=2.7e+02 Score=20.20 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=21.6
Q ss_pred EEEEeecCCChhHHHHHHhcCCeeec
Q 033454 61 VFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 61 ~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
.+...+...|....+||.++|.+.+-
T Consensus 117 h~S~q~~v~N~~~~~f~~~~G~~rvV 142 (347)
T COG0826 117 HVSTQANVTNAETAKFWKELGAKRVV 142 (347)
T ss_pred EEeeeEecCCHHHHHHHHHcCCEEEE
Confidence 45667888999999999999988753
No 242
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=23.55 E-value=12 Score=29.68 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=53.3
Q ss_pred EEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeee
Q 033454 8 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 85 (119)
Q Consensus 8 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~ 85 (119)
+||-++...+... +..++.+..+.-+.|-+|+|+.++.++.++.+...++.. +.+..++ .++..+++.||...
T Consensus 431 ~vggi~~r~f~~k--~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~--~ltyad~-~aigyfkkqgfs~e 503 (720)
T KOG1472|consen 431 VVGGICFRPFPEK--GFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDY--ALTYADE-GAIGYFKKQGFSKE 503 (720)
T ss_pred cccccccCcCccc--CCcceeeccccCcccccccCcCchhhHHHHhhccchHHH--HHHhhhh-cccccccCccchhh
Confidence 7777775544432 578899999999999999999999999999864322332 3344455 56778888888754
No 243
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=23.37 E-value=26 Score=23.92 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=22.2
Q ss_pred cCccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 57 FGIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 57 ~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
+.+..+--.+..+.....||.+|+||.--.
T Consensus 35 ~si~~lA~~~~vS~aTv~Rf~kklG~~gf~ 64 (284)
T PRK11302 35 SSIATLAKMANVSEPTVNRFCRSLDTKGFP 64 (284)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHcCCCCHH
Confidence 345555556677788899999999998543
No 244
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=23.19 E-value=2e+02 Score=21.79 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=31.6
Q ss_pred CccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechh
Q 033454 33 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 88 (119)
Q Consensus 33 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~ 88 (119)
.+++|.-|+|.+++ +.+|+++|++.+ +|+.-+.-.+.+|.+.+.+.
T Consensus 363 ~~D~RdygigAqIL--------~dLGI~~irLLT--NNp~K~~~L~~~GieVve~v 408 (450)
T PLN02831 363 PVDSREYGIGAQIL--------RDLGVRTMRLMT--NNPAKYTGLKGYGLAVVGRV 408 (450)
T ss_pred cccceehHHHHHHH--------HHcCCCEEEECC--CCHHHHHHHhhCCCEEEEEe
Confidence 34567777777663 256888887754 47766666788999987654
No 245
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=23.16 E-value=2e+02 Score=18.95 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.3
Q ss_pred EeecCCChhHHHHHHhcCCeeec
Q 033454 64 AKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 64 ~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
..+...|..+.++|++.|+..+.
T Consensus 43 ~~~nv~N~~s~~~~~~~G~~~i~ 65 (233)
T PF01136_consen 43 YSLNVFNSESARFLKELGASRIT 65 (233)
T ss_pred cCccCCCHHHHHHHHHcCCCEEE
Confidence 45667899999999999999876
No 246
>TIGR02913 HAF_rpt probable extracellular repeat, HAF family. The model for this family detects a homology domain of about 40 amino acids. Member proteins always have a least two tandem copies and as many as seven. The spacing between repeats as defined here usually is four residues exactly. This repeat is named for a tripeptide motif HAF found in most members. Some members proteins are found in species with no outer membrane (archaea and Gram-positive bacteria) while others have C-terminal autotransporter domains that suggest that the repeat region is transported across the outer membrane. This domain seems likely to be an extracellular protein repeat.
Probab=23.13 E-value=96 Score=14.65 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=9.2
Q ss_pred CCCCCcEEEEEE
Q 033454 2 VSSFAAMVGDVN 13 (119)
Q Consensus 2 ~~~~g~~vG~~~ 13 (119)
++.+|++||...
T Consensus 4 In~~G~VvG~s~ 15 (39)
T TIGR02913 4 INNDGQVVGYST 15 (39)
T ss_pred CCCCCcEEEEEE
Confidence 467899998764
No 247
>PRK15482 transcriptional regulator MurR; Provisional
Probab=22.94 E-value=27 Score=24.08 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=20.5
Q ss_pred CccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 58 GIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
.+..+--.+..+.....||.+|+||.--.
T Consensus 36 si~elA~~~~vS~aTv~Rf~kkLGf~Gf~ 64 (285)
T PRK15482 36 SSRKMAKQLGISQSSIVKFAQKLGAQGFT 64 (285)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhCCCCHH
Confidence 34444445566778899999999998544
No 248
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=22.84 E-value=1.6e+02 Score=18.21 Aligned_cols=38 Identities=18% Similarity=0.015 Sum_probs=24.9
Q ss_pred CccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 33 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 33 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
..-|||+||....+.-.-..+.+-..-+.|.+...++.
T Consensus 13 mq~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~DD 50 (135)
T COG3543 13 MQGYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGPDD 50 (135)
T ss_pred eeecccccCCHHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 36799999999988877776653333344555444443
No 249
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=22.82 E-value=82 Score=17.96 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=10.0
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCcccc
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSR 37 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r 37 (119)
..|++||-+.+.... ....+.+...+|+||
T Consensus 20 ~~g~~lg~V~f~dC~----~~~~~~~~ssDpdF~ 49 (90)
T PF08758_consen 20 EAGQPLGKVNFEDCT----GRRRVIFESSDPDFR 49 (90)
T ss_dssp -SS--EEE---B--S----S---EEEE---SEEE
T ss_pred hCCcEEEEEEeccCC----CCCceEEecCCCCEE
Confidence 468888888865554 334455555566665
No 250
>PF15538 Toxin_61: Putative toxin 61
Probab=22.06 E-value=73 Score=20.30 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=26.2
Q ss_pred EeecCCChhHHHHHHhcCCeeechhhhhhhhccccc
Q 033454 64 AKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELP 99 (119)
Q Consensus 64 ~~~~~~n~~~~~~y~k~Gf~~~~~~~~~~~~~~~~~ 99 (119)
+.+......|..||++.||.......+.....+.-+
T Consensus 19 inirgn~e~a~~F~~s~G~~~~~~~~~m~GIDf~~P 54 (157)
T PF15538_consen 19 INIRGNREIASDFFKSQGLTEADMESYMNGIDFSKP 54 (157)
T ss_pred eeeccchHHHHHHHHHcCCCHHHHHHHhccCCcCCc
Confidence 456667788999999999998876555555554443
No 251
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.99 E-value=83 Score=17.95 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=13.3
Q ss_pred ChhHHHHHHh-cCCeeec
Q 033454 70 NGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 70 n~~~~~~y~k-~Gf~~~~ 86 (119)
-.+|.+||.+ +||+...
T Consensus 11 ~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 11 VEKTLEFYERAFGFERRF 28 (125)
T ss_pred HHHHHHHHHHhhCCeEEe
Confidence 3489999988 7998743
No 252
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=21.76 E-value=1.8e+02 Score=21.40 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=17.3
Q ss_pred hcCccEEEEeecCCChhHHHHHHhcCCeeech
Q 033454 56 NFGIHVFRAKIGESNGASLRLFQKLGFEDISY 87 (119)
Q Consensus 56 ~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~ 87 (119)
.+|+.++.+. +|+.-..-.+.+|.+.+++
T Consensus 336 ~LGV~kirLL---nNP~K~~~L~~~GIeV~~~ 364 (369)
T PRK12485 336 DLGVGKLRHL---GPPLKYAGLTGYDLEVVES 364 (369)
T ss_pred HcCCCEEEEC---CCchhhhhhhhCCcEEEEE
Confidence 5677777775 3554444456666666543
No 253
>PRK04017 hypothetical protein; Provisional
Probab=21.70 E-value=1e+02 Score=19.12 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=17.9
Q ss_pred EEEEeCccccCCcHHHHHHHHHHH
Q 033454 28 EIMIAEPKSRGKGLAKDAVLMMMA 51 (119)
Q Consensus 28 ~~~~v~~~~rg~Gig~~l~~~~~~ 51 (119)
-.+.++||+.|.-+.+++.+.+..
T Consensus 68 VIILTD~D~~GekIr~~l~~~l~~ 91 (132)
T PRK04017 68 VIILTDFDRKGEELAKKLSEYLQG 91 (132)
T ss_pred EEEEECCCcchHHHHHHHHHHHHh
Confidence 445668999999888888666543
No 254
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=21.62 E-value=2.1e+02 Score=20.08 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.9
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 69 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~ 69 (119)
+.-.|+-=|-..+..++++|. ++|++.+++.+++-
T Consensus 57 ~~~~GH~aGf~~l~~ile~C~-~lGI~~vT~fAFSi 91 (271)
T KOG1602|consen 57 ETSEGHEAGFEALKEILELCK-ELGIKEVTVFAFSI 91 (271)
T ss_pred CcccchHHHHHHHHHHHHHHH-HcCCcEEEEEEEeh
Confidence 345677788889999999996 88999999888765
No 255
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=21.54 E-value=2.5e+02 Score=18.41 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeec
Q 033454 42 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 86 (119)
Q Consensus 42 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~ 86 (119)
|+-|+.+.++.+. . .+.++++-+.++.+.-..+..+.|++...
T Consensus 26 GkpLI~~v~~al~-~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~ 68 (177)
T COG2266 26 GKPLIDRVLEALR-K-IVDEIIVAISPHTPKTKEYLESVGVKVIE 68 (177)
T ss_pred CccHHHHHHHHHH-h-hcCcEEEEeCCCCHhHHHHHHhcCceEEE
Confidence 4668888888775 3 67889999999999999999999988765
No 256
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.42 E-value=1.4e+02 Score=15.35 Aligned_cols=26 Identities=12% Similarity=0.269 Sum_probs=16.2
Q ss_pred EEEEeecCCCh-hHHHHHHhcCCeeec
Q 033454 61 VFRAKIGESNG-ASLRLFQKLGFEDIS 86 (119)
Q Consensus 61 ~i~~~~~~~n~-~~~~~y~k~Gf~~~~ 86 (119)
.+.+.+...+. ...+..++.||+...
T Consensus 44 ~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 44 ILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred EEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 34455544444 677778888887653
No 257
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.40 E-value=1.4e+02 Score=16.88 Aligned_cols=15 Identities=33% Similarity=0.611 Sum_probs=8.5
Q ss_pred hhHHHHHHh-cCCeee
Q 033454 71 GASLRLFQK-LGFEDI 85 (119)
Q Consensus 71 ~~~~~~y~k-~Gf~~~ 85 (119)
.+|.+||.+ +||+..
T Consensus 13 ~~a~~FY~~~lG~~~~ 28 (120)
T cd07254 13 EASIAFYSKLFGVEPT 28 (120)
T ss_pred HHHHHHHHHHhCCeEe
Confidence 466666643 366654
No 258
>PF04393 DUF535: Protein of unknown function (DUF535); InterPro: IPR007488 Family member Shigella flexneri VirK (Q99QA5 from SWISSPROT) is a virulence protein required for the expression, or correct membrane localisation of IcsA (VirG) on the bacterial cell surface [, ]. This family also includes Pasteurella haemolytica lapB (P32181 from SWISSPROT), which is thought to be membrane-associated.
Probab=21.28 E-value=3e+02 Score=19.31 Aligned_cols=73 Identities=8% Similarity=0.001 Sum_probs=45.0
Q ss_pred CCCcEEEEEEEEeecCCCCCeeEEEEEEeCccccCCcHHHH-------------HHHHHHHHHHHhcCccEEEEeecCCC
Q 033454 4 SFAAMVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKD-------------AVLMMMAYAVENFGIHVFRAKIGESN 70 (119)
Q Consensus 4 ~~g~~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~-------------l~~~~~~~~~~~~~~~~i~~~~~~~n 70 (119)
.+|..+..+++........+...||.+--.....++..-+. |+..+...| +.+|+..|.+......
T Consensus 134 ~~~~~ly~~tF~~~~~~~~~~l~IG~lQGp~~~~~~e~ik~~TK~~hGlrPK~ll~e~l~~la-~~~~~~~i~aVsn~~h 212 (288)
T PF04393_consen 134 EEGQRLYSLTFSFVPQNGENTLFIGGLQGPKSENAHEIIKSATKACHGLRPKRLLLEALQALA-RALGIEQILAVSNKGH 212 (288)
T ss_pred CCCceEEEEEEEEEccCCCceEEEEeeeCCCCCCChHHHHHHHHHhcCcCHHHHHHHHHHHHH-HHcCCCEEEEECCCch
Confidence 34688888887776555557888888866333334444333 344444445 4789999988766655
Q ss_pred hhHHHHH
Q 033454 71 GASLRLF 77 (119)
Q Consensus 71 ~~~~~~y 77 (119)
.....-|
T Consensus 213 i~~~~ry 219 (288)
T PF04393_consen 213 IYQSWRY 219 (288)
T ss_pred HHHHHHh
Confidence 5444444
No 259
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=21.27 E-value=95 Score=16.65 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=15.4
Q ss_pred CChhHHHHHHh-cCCeeechh
Q 033454 69 SNGASLRLFQK-LGFEDISYS 88 (119)
Q Consensus 69 ~n~~~~~~y~k-~Gf~~~~~~ 88 (119)
+-..+.+||.+ +||+.....
T Consensus 8 d~~~~~~fy~~~lg~~~~~~~ 28 (112)
T cd06587 8 DLEAAVAFYEEVLGFEVLFRN 28 (112)
T ss_pred CHHHHHHHHHhccCCEEEEee
Confidence 34588999998 999976643
No 260
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=21.16 E-value=1.2e+02 Score=17.27 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=15.2
Q ss_pred ccEEEEeecCCChhHHHHHHh-cCCeeec
Q 033454 59 IHVFRAKIGESNGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 59 ~~~i~~~~~~~n~~~~~~y~k-~Gf~~~~ 86 (119)
+..+.+.|. +=.+|.+||.+ +||+...
T Consensus 7 i~hv~l~v~-dl~~a~~FY~~~lG~~~~~ 34 (121)
T cd09013 7 LAHVELLTP-KPEESLWFFTDVLGLEETG 34 (121)
T ss_pred eeEEEEEeC-CHHHHHHHHHhCcCCEEEe
Confidence 344444442 22477778866 5887654
No 261
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=21.08 E-value=98 Score=19.48 Aligned_cols=64 Identities=16% Similarity=0.057 Sum_probs=37.4
Q ss_pred CCCCcEEEEEEEEeecCCC------------------CCeeEEEEEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEE
Q 033454 3 SSFAAMVGDVNIYMNDLDN------------------LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRA 64 (119)
Q Consensus 3 ~~~g~~vG~~~~~~~~~~~------------------~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~ 64 (119)
+++|++||+++....++.. .+..++-.++. | -|-++++...+....|-. +.+++
T Consensus 59 de~g~Piaf~~WA~vde~~e~~lL~~~~~l~p~dW~SG~~iwii~~iA-P----fGh~r~~~~dl~~~lFp~---~~vr~ 130 (148)
T COG2994 59 DEHGRPIAFCTWAFVDEQAEEELLENDRNLSPEDWASGNNIWIIDWIA-P----FGHSRQMVKDLHRNLFPD---RTVRA 130 (148)
T ss_pred cCCCCeeEEEEEeecCHHHHHHHHhCCCCCChhhccCCCeeEEEEEEc-c----CCchHHHHHHHHHHhCch---hhhhh
Confidence 3689999999987765421 13345555454 6 566677775555555533 24445
Q ss_pred eecCCChhHH
Q 033454 65 KIGESNGASL 74 (119)
Q Consensus 65 ~~~~~n~~~~ 74 (119)
.....|+..+
T Consensus 131 ~~~~~~dk~l 140 (148)
T COG2994 131 LYHKGNDKGL 140 (148)
T ss_pred eeecCCCcce
Confidence 5555555433
No 262
>PRK08815 GTP cyclohydrolase; Provisional
Probab=20.99 E-value=2.5e+02 Score=20.66 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=31.0
Q ss_pred CccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCCeeechhh
Q 033454 33 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 89 (119)
Q Consensus 33 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf~~~~~~~ 89 (119)
.++.|.-|+|.+++ +.+|++++.+.+ +|+.-..-.+.+|.+.+++.+
T Consensus 295 ~~D~RdygigAQIL--------~dLGV~kirLLT--nnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 295 GPDERRYGSAVAML--------RGLGITRVRLLT--NNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred CccceeeeHHHHHH--------HHcCCCeEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 34567777776663 256888887755 466555566788888877543
No 263
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.92 E-value=97 Score=21.40 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=29.0
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCC
Q 033454 34 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 69 (119)
Q Consensus 34 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~ 69 (119)
|...|+--|...+..++++|. ..|++.+++++++.
T Consensus 35 ~~~~GH~~G~~~~~~iv~~c~-~~gI~~lTvYaFS~ 69 (253)
T PRK14836 35 PRVEGHRAGVRAVRRTIEFCL-EKGIEMLTLFAFSS 69 (253)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEehhHhhh
Confidence 445577889999999999996 77999999887665
No 264
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=20.81 E-value=2e+02 Score=16.97 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCccEEEEeecCCCh---hHHHHHHhcCCeeec
Q 033454 44 DAVLMMMAYAVENFGIHVFRAKIGESNG---ASLRLFQKLGFEDIS 86 (119)
Q Consensus 44 ~l~~~~~~~~~~~~~~~~i~~~~~~~n~---~~~~~y~k~Gf~~~~ 86 (119)
++.+.+.+.+. +.+++.+.+.+...+. ++++.+.+.|+....
T Consensus 47 ~~a~~~~~~~~-~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 47 QAAEKIAKKAK-ELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHHHH-CTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-HcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 45556667775 6799999888776544 677888888887553
No 265
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.73 E-value=95 Score=17.64 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=13.3
Q ss_pred ChhHHHHHHh-cCCeeec
Q 033454 70 NGASLRLFQK-LGFEDIS 86 (119)
Q Consensus 70 n~~~~~~y~k-~Gf~~~~ 86 (119)
-.+|++||.+ +||+...
T Consensus 10 l~~s~~FY~~~lG~~~~~ 27 (125)
T cd08357 10 LEAARAFYGDVLGCKEGR 27 (125)
T ss_pred HHHHHHHHHHhcCCEEee
Confidence 4588999975 8998754
No 266
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=20.73 E-value=2.3e+02 Score=17.73 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=31.9
Q ss_pred eEEEEEEeCccccCCcHHHHHHHHHHHHHHHh-cCccEEEEeecCC
Q 033454 25 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVEN-FGIHVFRAKIGES 69 (119)
Q Consensus 25 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~~i~~~~~~~ 69 (119)
=.||..-| ++-||..+..+.+..+...+... ...+++.+.+..+
T Consensus 18 KylG~~eV-~e~RG~~v~~~Ai~klk~~~k~~~~kk~kV~L~IS~d 62 (139)
T cd01215 18 KLIGIQEV-DKARGDAMCAEAMRKAKSIIKGAGAHKTRITLQINID 62 (139)
T ss_pred EecccEec-ccCCchHHHHHHHHHHHHHhhhhccccceEEEEEccC
Confidence 45888888 89999999999999887654322 2456777766554
No 267
>PRK03661 hypothetical protein; Validated
Probab=20.64 E-value=2.4e+02 Score=18.02 Aligned_cols=14 Identities=21% Similarity=0.048 Sum_probs=9.3
Q ss_pred CCcEEEEEEEEeec
Q 033454 5 FAAMVGDVNIYMND 18 (119)
Q Consensus 5 ~g~~vG~~~~~~~~ 18 (119)
+++++|.+.+....
T Consensus 113 ~~kpvGtv~i~i~~ 126 (164)
T PRK03661 113 EEKPVGTVWFGFAS 126 (164)
T ss_pred CCCCceEEEEEEEe
Confidence 46889877665544
No 268
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=20.56 E-value=1.5e+02 Score=16.62 Aligned_cols=18 Identities=17% Similarity=0.565 Sum_probs=13.2
Q ss_pred CChhHHHHHH-hcCCeeec
Q 033454 69 SNGASLRLFQ-KLGFEDIS 86 (119)
Q Consensus 69 ~n~~~~~~y~-k~Gf~~~~ 86 (119)
+-..|.+||. .+||+...
T Consensus 11 d~~~a~~FY~~~lG~~~~~ 29 (122)
T cd07246 11 DAAAAIDFYKKAFGAEELE 29 (122)
T ss_pred CHHHHHHHHHHhhCCEEEE
Confidence 4457889997 48998764
No 269
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.52 E-value=66 Score=17.70 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=13.6
Q ss_pred cccCCcHHHHHHHHHHHH
Q 033454 35 KSRGKGLAKDAVLMMMAY 52 (119)
Q Consensus 35 ~~rg~Gig~~l~~~~~~~ 52 (119)
||+||-++.++++.++-.
T Consensus 2 Df~gQ~~ae~l~~~il~~ 19 (76)
T PF06645_consen 2 DFKGQRLAEKLMQYILII 19 (76)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 678888888887776654
No 270
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=20.48 E-value=3e+02 Score=19.96 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=30.2
Q ss_pred EEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcCC
Q 033454 30 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 82 (119)
Q Consensus 30 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~Gf 82 (119)
+.++.++..-|+|+.+...+.+..++..+.+-.++.+...-...-..+++.++
T Consensus 284 vtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le~~~~ 336 (356)
T PLN02683 284 VTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLERLAL 336 (356)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHHHhhC
Confidence 55567777889999999999887543333333333332222233334555554
No 271
>PRK06724 hypothetical protein; Provisional
Probab=20.27 E-value=1.6e+02 Score=17.57 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=17.7
Q ss_pred CccEEEEeecCCChhHHHHHHh----cCCeee
Q 033454 58 GIHVFRAKIGESNGASLRLFQK----LGFEDI 85 (119)
Q Consensus 58 ~~~~i~~~~~~~n~~~~~~y~k----~Gf~~~ 85 (119)
++..+.+.|..- .+|.+||.+ +||+..
T Consensus 7 ~i~Hv~l~V~Dl-e~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVANL-EESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCCH-HHHHHHHHHHHhhCCcEEe
Confidence 566666666333 477888887 577764
No 272
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=20.25 E-value=1.4e+02 Score=21.20 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=26.9
Q ss_pred EEEEeCccccCCcHHHHHHHHHHHHHHHhcCccE
Q 033454 28 EIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHV 61 (119)
Q Consensus 28 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~ 61 (119)
..+.|+..++..|+|.++...+.+-+|+.+..+.
T Consensus 290 ~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv 323 (359)
T KOG0524|consen 290 RLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPV 323 (359)
T ss_pred eEEEEeccccccchhHHHHHHHHHHHHhhhcchh
Confidence 3456678899999999999999998886655443
No 273
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=20.23 E-value=75 Score=19.30 Aligned_cols=48 Identities=8% Similarity=0.188 Sum_probs=28.4
Q ss_pred EEEeCccccCCcHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhc
Q 033454 29 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 80 (119)
Q Consensus 29 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~ 80 (119)
..++.|+.-.+|...++++.+.+..+ .+..+.....+. ..+.+||...
T Consensus 4 l~iIKPd~~~~~~~g~Il~~i~~~Gf---~I~~~k~~~lt~-~~a~~~Y~~~ 51 (133)
T cd00595 4 LALIKPDAVAEGLLGEIIMRIEDAGF---EIVAMKELHLTE-EQAEEFYVEH 51 (133)
T ss_pred EEEECchHHhcCcHHHHHHHHHHcCC---EEEEeeeecCCH-HHHHHHHHHh
Confidence 34557888777888888887765433 333333333333 4566788654
No 274
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.11 E-value=1.4e+02 Score=17.08 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=12.3
Q ss_pred CChhHHHHHHh-cCCeee
Q 033454 69 SNGASLRLFQK-LGFEDI 85 (119)
Q Consensus 69 ~n~~~~~~y~k-~Gf~~~ 85 (119)
+-.+|.+||++ +||+..
T Consensus 12 D~~~a~~FY~~~lG~~~~ 29 (120)
T cd09011 12 DIEKSKKFYEKVLGLKVV 29 (120)
T ss_pred CHHHHHHHHHHhcCCEEe
Confidence 34578888874 888765
No 275
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=20.00 E-value=3.1e+02 Score=18.99 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHhcCccEEEEeecCCChhHHHHHHhcC
Q 033454 40 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 81 (119)
Q Consensus 40 Gig~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~k~G 81 (119)
.+|-++...+++.+. ..+++.+.+.+...-....++.+++|
T Consensus 247 ~~gi~~a~e~~~~l~-~~gv~GvH~~t~n~~~~~~~il~~lg 287 (287)
T PF02219_consen 247 EIGIEIAVELIRELL-AEGVPGVHLYTMNREELVPEILENLG 287 (287)
T ss_dssp HHHHHHHHHHHHHHH-HTT-SEEEEEETTTSHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHH-HcCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 455556666666554 35788899988888888888888877
Done!