Query 033455
Match_columns 119
No_of_seqs 110 out of 1106
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.8 3.3E-19 7.2E-24 118.0 10.2 89 4-93 68-156 (160)
2 KOG0027 Calmodulin and related 99.8 1.1E-17 2.3E-22 110.6 9.8 91 2-93 55-149 (151)
3 KOG0028 Ca2+-binding protein ( 99.7 3.6E-16 7.8E-21 102.5 9.8 91 3-94 81-171 (172)
4 KOG0031 Myosin regulatory ligh 99.7 1.3E-15 2.9E-20 99.3 10.0 92 2-94 75-166 (171)
5 PTZ00183 centrin; Provisional 99.6 2.7E-14 5.9E-19 93.8 10.9 90 3-93 65-154 (158)
6 PTZ00184 calmodulin; Provision 99.6 4.5E-14 9.7E-19 91.7 10.8 89 3-92 59-147 (149)
7 KOG0034 Ca2+/calmodulin-depend 99.6 2.7E-14 5.9E-19 97.2 9.8 97 3-100 78-181 (187)
8 cd05022 S-100A13 S-100A13: S-1 99.5 3.2E-14 7E-19 86.3 7.0 67 27-94 7-76 (89)
9 PF13499 EF-hand_7: EF-hand do 99.5 1.1E-13 2.3E-18 79.2 7.0 62 29-91 1-66 (66)
10 cd05027 S-100B S-100B: S-100B 99.5 6.3E-13 1.4E-17 80.5 8.3 67 27-94 7-80 (88)
11 KOG0038 Ca2+-binding kinase in 99.4 8.9E-13 1.9E-17 85.7 7.9 97 3-100 83-183 (189)
12 KOG0044 Ca2+ sensor (EF-Hand s 99.4 1.6E-12 3.4E-17 88.8 7.8 98 2-101 75-182 (193)
13 KOG0030 Myosin essential light 99.4 2.9E-12 6.2E-17 82.5 8.5 86 6-93 64-151 (152)
14 cd05031 S-100A10_like S-100A10 99.4 3.1E-12 6.7E-17 78.2 7.1 67 27-94 7-80 (94)
15 cd05026 S-100Z S-100Z: S-100Z 99.4 6.2E-12 1.3E-16 76.8 7.8 66 28-94 10-82 (93)
16 cd05025 S-100A1 S-100A1: S-100 99.4 7.3E-12 1.6E-16 76.3 8.1 67 27-94 8-81 (92)
17 KOG0037 Ca2+-binding protein, 99.3 1.4E-11 2.9E-16 84.7 9.6 85 2-94 105-189 (221)
18 cd05029 S-100A6 S-100A6: S-100 99.3 1.1E-11 2.5E-16 75.0 7.8 66 28-94 10-80 (88)
19 KOG0027 Calmodulin and related 99.3 1.2E-11 2.5E-16 81.7 8.3 68 26-94 6-73 (151)
20 KOG0044 Ca2+ sensor (EF-Hand s 99.3 2.3E-11 5.1E-16 83.1 9.3 90 3-93 39-128 (193)
21 cd00213 S-100 S-100: S-100 dom 99.3 2.7E-11 5.8E-16 73.0 7.2 68 26-94 6-80 (88)
22 smart00027 EH Eps15 homology d 99.3 4.2E-11 9.1E-16 73.4 8.0 66 25-93 7-72 (96)
23 PF13833 EF-hand_8: EF-hand do 99.2 4.1E-11 8.9E-16 65.9 6.4 52 41-93 1-53 (54)
24 cd00052 EH Eps15 homology doma 99.2 9E-11 1.9E-15 66.8 7.4 60 31-93 2-61 (67)
25 cd05023 S-100A11 S-100A11: S-1 99.2 1E-10 2.2E-15 70.9 7.9 67 27-94 8-81 (89)
26 PTZ00183 centrin; Provisional 99.2 6.6E-10 1.4E-14 72.9 11.1 96 2-99 28-124 (158)
27 cd00051 EFh EF-hand, calcium b 99.2 3.5E-10 7.6E-15 62.3 7.5 61 30-91 2-62 (63)
28 cd00252 SPARC_EC SPARC_EC; ext 99.1 4.2E-10 9.2E-15 71.3 7.5 62 26-92 46-107 (116)
29 COG5126 FRQ1 Ca2+-binding prot 99.1 5.4E-10 1.2E-14 74.2 8.2 66 26-93 18-83 (160)
30 PTZ00184 calmodulin; Provision 99.1 1.7E-09 3.7E-14 70.0 10.4 96 2-98 22-117 (149)
31 KOG0036 Predicted mitochondria 99.1 1.2E-09 2.5E-14 81.4 8.7 86 2-94 62-147 (463)
32 PF14658 EF-hand_9: EF-hand do 99.0 2.1E-09 4.6E-14 61.2 6.5 62 32-93 2-64 (66)
33 KOG0028 Ca2+-binding protein ( 99.0 8.4E-09 1.8E-13 68.0 10.2 97 2-100 44-141 (172)
34 cd05030 calgranulins Calgranul 99.0 2.8E-09 6.1E-14 64.4 6.9 67 27-94 7-80 (88)
35 PLN02964 phosphatidylserine de 98.9 2.3E-08 5E-13 79.0 10.3 64 30-94 181-244 (644)
36 KOG0030 Myosin essential light 98.8 2.5E-08 5.4E-13 64.5 6.5 72 24-96 7-80 (152)
37 KOG0031 Myosin regulatory ligh 98.7 8.1E-08 1.8E-12 63.1 7.4 64 25-93 29-92 (171)
38 KOG4223 Reticulocalbin, calume 98.7 4.4E-08 9.6E-13 71.0 5.9 88 2-90 211-302 (325)
39 PLN02964 phosphatidylserine de 98.6 6.2E-08 1.4E-12 76.6 6.2 65 26-95 141-209 (644)
40 cd05024 S-100A10 S-100A10: A s 98.6 3.5E-07 7.5E-12 55.5 8.0 65 28-94 8-77 (91)
41 KOG0041 Predicted Ca2+-binding 98.6 1.8E-07 4E-12 64.0 7.0 70 26-96 97-166 (244)
42 PF00036 EF-hand_1: EF hand; 98.6 7.4E-08 1.6E-12 46.4 3.6 27 30-56 2-28 (29)
43 PF00036 EF-hand_1: EF hand; 98.6 9.9E-08 2.1E-12 46.0 3.3 28 66-93 1-28 (29)
44 PF13833 EF-hand_8: EF-hand do 98.5 3.8E-07 8.1E-12 49.8 5.9 52 4-56 1-53 (54)
45 PF13405 EF-hand_6: EF-hand do 98.5 2.7E-07 5.8E-12 45.0 3.6 30 29-58 1-31 (31)
46 KOG0034 Ca2+/calmodulin-depend 98.5 2.6E-06 5.5E-11 58.3 9.6 86 4-95 47-134 (187)
47 KOG0036 Predicted mitochondria 98.4 5.8E-07 1.3E-11 67.3 6.0 70 26-96 12-82 (463)
48 PF12763 EF-hand_4: Cytoskelet 98.4 2.6E-06 5.6E-11 53.0 7.6 64 25-92 7-70 (104)
49 KOG0377 Protein serine/threoni 98.4 3.7E-06 8E-11 63.8 8.9 67 29-96 548-618 (631)
50 PF13499 EF-hand_7: EF-hand do 98.4 1.5E-06 3.2E-11 49.2 5.3 53 2-54 11-66 (66)
51 PRK12309 transaldolase/EF-hand 98.3 5.1E-06 1.1E-10 62.7 8.5 59 22-94 328-386 (391)
52 KOG0037 Ca2+-binding protein, 98.2 6.7E-06 1.5E-10 56.9 7.2 65 29-93 58-122 (221)
53 PF14788 EF-hand_10: EF hand; 98.1 1.5E-05 3.2E-10 43.1 5.4 49 44-93 1-49 (51)
54 KOG4223 Reticulocalbin, calume 98.1 1.4E-05 3.1E-10 58.2 6.7 94 2-95 124-230 (325)
55 PF13202 EF-hand_5: EF hand; P 98.1 6.7E-06 1.5E-10 38.1 3.0 23 31-53 2-24 (25)
56 cd05022 S-100A13 S-100A13: S-1 97.9 3.5E-05 7.6E-10 46.6 5.6 55 3-57 21-76 (89)
57 KOG4666 Predicted phosphate ac 97.9 2.4E-05 5.1E-10 57.3 5.3 94 3-99 271-364 (412)
58 cd05029 S-100A6 S-100A6: S-100 97.8 0.0001 2.2E-09 44.5 6.3 53 5-57 26-80 (88)
59 PF13202 EF-hand_5: EF hand; P 97.8 2.5E-05 5.5E-10 36.1 2.8 25 67-91 1-25 (25)
60 cd05026 S-100Z S-100Z: S-100Z 97.8 0.00011 2.5E-09 44.6 6.3 56 3-58 23-83 (93)
61 KOG0046 Ca2+-binding actin-bun 97.8 0.00011 2.4E-09 56.9 7.4 68 26-94 17-86 (627)
62 cd00213 S-100 S-100: S-100 dom 97.8 0.00012 2.6E-09 43.8 5.9 55 3-57 22-80 (88)
63 cd00051 EFh EF-hand, calcium b 97.8 0.00018 4E-09 38.8 6.2 51 3-54 12-62 (63)
64 cd05030 calgranulins Calgranul 97.8 0.00011 2.4E-09 44.3 5.6 54 4-57 23-80 (88)
65 cd05027 S-100B S-100B: S-100B 97.7 0.00016 3.5E-09 43.6 6.2 55 3-57 21-80 (88)
66 KOG2643 Ca2+ binding protein, 97.7 1.7E-05 3.7E-10 59.9 2.2 95 3-100 211-321 (489)
67 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.8E-05 3.8E-10 50.0 1.6 63 25-90 51-113 (113)
68 KOG0040 Ca2+-binding actin-bun 97.7 0.00014 3E-09 62.1 7.2 65 29-94 2254-2325(2399)
69 cd05031 S-100A10_like S-100A10 97.7 7.4E-05 1.6E-09 45.4 4.3 55 5-59 24-82 (94)
70 PF13405 EF-hand_6: EF-hand do 97.7 7.8E-05 1.7E-09 36.0 3.3 27 66-92 1-27 (31)
71 cd00052 EH Eps15 homology doma 97.6 0.00036 7.8E-09 39.0 6.3 53 2-57 10-62 (67)
72 cd05023 S-100A11 S-100A11: S-1 97.6 0.00029 6.2E-09 42.6 6.0 52 6-57 26-81 (89)
73 cd05025 S-100A1 S-100A1: S-100 97.5 0.00061 1.3E-08 41.1 6.3 55 3-57 22-81 (92)
74 cd00252 SPARC_EC SPARC_EC; ext 97.4 0.00059 1.3E-08 43.3 5.8 48 2-54 59-106 (116)
75 smart00027 EH Eps15 homology d 97.4 0.00077 1.7E-08 41.0 6.2 52 2-56 21-72 (96)
76 cd05024 S-100A10 S-100A10: A s 97.2 0.0024 5.2E-08 38.8 6.4 56 3-58 19-78 (91)
77 smart00054 EFh EF-hand, calciu 97.2 0.00053 1.1E-08 31.1 2.9 24 68-91 3-26 (29)
78 KOG4251 Calcium binding protei 97.2 0.00041 9E-09 49.3 3.4 66 27-93 100-168 (362)
79 PF09279 EF-hand_like: Phospho 97.2 0.0012 2.5E-08 39.0 4.8 64 29-93 1-69 (83)
80 smart00054 EFh EF-hand, calciu 97.1 0.00069 1.5E-08 30.7 3.0 27 30-56 2-28 (29)
81 KOG4065 Uncharacterized conser 97.0 0.0036 7.9E-08 39.6 5.8 60 31-90 70-142 (144)
82 KOG0751 Mitochondrial aspartat 97.0 0.0018 4E-08 50.1 5.2 53 3-58 86-138 (694)
83 KOG2562 Protein phosphatase 2 96.8 0.0054 1.2E-07 47.0 6.7 85 4-89 328-420 (493)
84 PF14658 EF-hand_9: EF-hand do 96.8 0.011 2.3E-07 33.8 6.2 56 2-57 9-65 (66)
85 KOG2643 Ca2+ binding protein, 96.7 0.018 3.8E-07 44.1 8.8 84 2-91 297-382 (489)
86 PRK12309 transaldolase/EF-hand 96.5 0.0062 1.3E-07 46.2 5.1 42 2-57 345-386 (391)
87 KOG1955 Ral-GTPase effector RA 96.3 0.012 2.7E-07 45.7 5.8 66 25-93 228-293 (737)
88 KOG2243 Ca2+ release channel ( 96.1 0.011 2.4E-07 51.1 5.0 61 32-94 4061-4121(5019)
89 PF14788 EF-hand_10: EF hand; 95.9 0.048 1E-06 29.5 5.3 49 8-57 2-50 (51)
90 KOG4347 GTPase-activating prot 95.9 0.017 3.6E-07 46.1 4.7 77 8-86 535-611 (671)
91 KOG1029 Endocytic adaptor prot 95.8 0.019 4.1E-07 46.8 5.0 63 27-92 194-256 (1118)
92 PF05517 p25-alpha: p25-alpha 95.8 0.083 1.8E-06 35.0 7.3 66 29-94 3-70 (154)
93 KOG4666 Predicted phosphate ac 95.5 0.015 3.2E-07 43.1 3.0 89 5-100 241-330 (412)
94 KOG0038 Ca2+-binding kinase in 95.4 0.028 6E-07 37.2 3.9 63 33-97 76-140 (189)
95 KOG2562 Protein phosphatase 2 95.4 0.04 8.7E-07 42.4 5.2 57 34-94 284-344 (493)
96 KOG3555 Ca2+-binding proteogly 95.4 0.034 7.4E-07 41.5 4.7 67 25-96 247-313 (434)
97 KOG0751 Mitochondrial aspartat 95.1 0.23 5.1E-06 38.9 8.5 98 7-108 52-150 (694)
98 PLN02952 phosphoinositide phos 95.0 0.41 8.9E-06 38.4 9.8 90 3-93 12-110 (599)
99 KOG4578 Uncharacterized conser 94.9 0.011 2.4E-07 43.7 1.0 63 28-93 333-398 (421)
100 KOG0041 Predicted Ca2+-binding 94.8 0.17 3.7E-06 35.2 6.4 64 2-66 110-173 (244)
101 KOG0042 Glycerol-3-phosphate d 94.7 0.045 9.7E-07 43.3 3.8 75 28-103 593-667 (680)
102 KOG0377 Protein serine/threoni 94.5 0.13 2.9E-06 39.7 6.0 56 2-57 558-616 (631)
103 PF12763 EF-hand_4: Cytoskelet 94.1 0.27 5.9E-06 30.5 5.8 51 3-56 21-71 (104)
104 KOG3866 DNA-binding protein of 93.8 0.12 2.6E-06 38.2 4.3 61 32-93 248-324 (442)
105 KOG0035 Ca2+-binding actin-bun 93.3 0.31 6.7E-06 40.6 6.3 66 28-94 747-817 (890)
106 PF05042 Caleosin: Caleosin re 93.1 0.81 1.7E-05 31.0 7.1 48 62-111 93-140 (174)
107 KOG0169 Phosphoinositide-speci 93.0 0.24 5.1E-06 40.4 5.1 65 29-94 137-201 (746)
108 KOG4251 Calcium binding protei 92.4 0.4 8.7E-06 34.5 5.1 86 3-89 248-341 (362)
109 KOG0040 Ca2+-binding actin-bun 92.3 0.81 1.7E-05 40.6 7.4 84 3-87 2265-2355(2399)
110 PF08976 DUF1880: Domain of un 92.0 0.17 3.6E-06 32.0 2.5 32 61-92 3-34 (118)
111 PF09069 EF-hand_3: EF-hand; 90.8 2.4 5.2E-05 25.6 7.5 64 27-93 2-75 (90)
112 PF08726 EFhand_Ca_insen: Ca2+ 90.7 0.34 7.3E-06 27.9 2.8 55 27-90 5-66 (69)
113 KOG1029 Endocytic adaptor prot 88.6 2.2 4.8E-05 35.5 6.7 57 33-92 18-76 (1118)
114 KOG0998 Synaptic vesicle prote 88.5 0.21 4.6E-06 41.6 1.1 67 25-94 280-346 (847)
115 PF09279 EF-hand_like: Phospho 88.4 1.2 2.6E-05 25.9 4.1 55 3-57 11-70 (83)
116 KOG1265 Phospholipase C [Lipid 87.8 5.9 0.00013 33.6 8.7 82 8-93 205-299 (1189)
117 cd08330 CARD_ASC_NALP1 Caspase 85.3 2 4.3E-05 25.4 3.8 55 40-100 25-79 (82)
118 TIGR01848 PHA_reg_PhaR polyhyd 85.0 1.1 2.4E-05 27.9 2.7 76 35-111 10-95 (107)
119 PLN02230 phosphoinositide phos 84.0 6.8 0.00015 31.7 7.3 69 24-93 25-102 (598)
120 PLN02222 phosphoinositide phos 82.3 7.1 0.00015 31.5 6.8 66 26-93 23-90 (581)
121 PLN02228 Phosphoinositide phos 81.8 9.4 0.0002 30.7 7.3 67 25-93 21-92 (567)
122 KOG2871 Uncharacterized conser 81.4 1.4 3.1E-05 33.4 2.5 62 25-87 306-368 (449)
123 KOG0039 Ferric reductase, NADH 77.0 7.4 0.00016 31.7 5.5 81 5-93 2-89 (646)
124 PF10591 SPARC_Ca_bdg: Secrete 76.8 0.69 1.5E-05 29.0 -0.3 47 3-52 66-112 (113)
125 KOG3449 60S acidic ribosomal p 76.3 16 0.00035 22.9 6.3 55 30-90 3-57 (112)
126 KOG1707 Predicted Ras related/ 75.9 4.5 9.8E-05 32.6 3.9 60 28-92 315-376 (625)
127 KOG0169 Phosphoinositide-speci 75.1 26 0.00057 29.1 8.0 85 3-93 148-232 (746)
128 PF12174 RST: RCD1-SRO-TAF4 (R 75.0 2.8 6E-05 24.1 1.9 33 61-93 21-53 (70)
129 cd07313 terB_like_2 tellurium 74.8 4.6 0.0001 24.3 3.1 31 62-92 34-64 (104)
130 PF10398 DUF2443: Protein of u 74.5 5 0.00011 23.3 2.9 48 63-117 15-62 (79)
131 PF05042 Caleosin: Caleosin re 69.3 32 0.00069 23.4 6.3 62 28-91 96-164 (174)
132 COG4359 Uncharacterized conser 67.9 29 0.00064 24.1 5.9 79 3-94 9-88 (220)
133 KOG3555 Ca2+-binding proteogly 65.0 8.8 0.00019 29.1 3.2 67 28-94 211-279 (434)
134 PLN02952 phosphoinositide phos 64.4 27 0.00058 28.4 6.0 52 41-93 13-65 (599)
135 PF00404 Dockerin_1: Dockerin 64.2 11 0.00024 16.3 2.3 14 38-51 1-14 (21)
136 PLN02223 phosphoinositide phos 63.6 39 0.00084 27.2 6.7 68 25-93 13-92 (537)
137 KOG0046 Ca2+-binding actin-bun 60.8 32 0.0007 27.6 5.7 56 3-58 30-87 (627)
138 PF03672 UPF0154: Uncharacteri 60.8 22 0.00048 20.1 3.6 32 42-74 29-60 (64)
139 PF12174 RST: RCD1-SRO-TAF4 (R 60.5 24 0.00053 20.2 3.9 49 5-57 6-54 (70)
140 KOG4578 Uncharacterized conser 59.0 14 0.00029 28.0 3.2 52 5-56 347-398 (421)
141 cd03035 ArsC_Yffb Arsenate Red 58.8 22 0.00048 21.8 3.8 56 42-102 33-91 (105)
142 PF01023 S_100: S-100/ICaBP ty 58.8 24 0.00052 18.1 3.5 28 29-56 7-36 (44)
143 PF09068 EF-hand_2: EF hand; 57.5 17 0.00038 23.2 3.2 28 30-57 99-126 (127)
144 cd08332 CARD_CASP2 Caspase act 57.4 35 0.00075 20.4 4.4 47 42-94 32-78 (90)
145 PRK00523 hypothetical protein; 56.5 28 0.0006 20.2 3.6 32 42-74 37-68 (72)
146 PF03732 Retrotrans_gag: Retro 56.2 36 0.00079 19.4 5.1 57 8-66 27-85 (96)
147 PF08461 HTH_12: Ribonuclease 55.4 18 0.0004 20.3 2.8 37 41-78 10-46 (66)
148 PF01885 PTS_2-RNA: RNA 2'-pho 55.4 26 0.00056 23.9 4.0 38 37-75 25-62 (186)
149 KOG4347 GTPase-activating prot 55.1 13 0.00029 30.3 2.9 46 3-50 567-612 (671)
150 TIGR03573 WbuX N-acetyl sugar 55.1 39 0.00084 25.2 5.2 31 43-74 301-331 (343)
151 cd08327 CARD_RAIDD Caspase act 55.0 45 0.00098 20.2 4.6 47 41-93 32-78 (94)
152 PF11593 Med3: Mediator comple 55.0 23 0.00049 27.0 3.9 71 43-117 6-77 (379)
153 PF04876 Tenui_NCP: Tenuivirus 54.7 62 0.0013 21.6 5.8 17 6-22 98-114 (175)
154 TIGR01639 P_fal_TIGR01639 Plas 54.3 32 0.00069 19.0 3.6 32 43-75 8-39 (61)
155 PRK10026 arsenate reductase; P 54.0 49 0.0011 21.6 5.0 57 42-102 36-95 (141)
156 COG2818 Tag 3-methyladenine DN 53.8 8.5 0.00018 26.5 1.4 89 8-99 36-128 (188)
157 PRK00819 RNA 2'-phosphotransfe 53.0 39 0.00085 23.0 4.6 37 38-75 27-63 (179)
158 COG3763 Uncharacterized protei 53.0 33 0.00071 19.8 3.5 33 42-75 36-68 (71)
159 cd07316 terB_like_DjlA N-termi 52.8 48 0.001 19.7 4.8 8 42-49 13-20 (106)
160 PF14513 DAG_kinase_N: Diacylg 49.6 72 0.0016 20.8 6.2 74 1-77 1-81 (138)
161 cd08329 CARD_BIRC2_BIRC3 Caspa 49.4 33 0.00072 20.7 3.4 54 41-100 34-87 (94)
162 PRK01844 hypothetical protein; 49.2 41 0.0009 19.4 3.6 31 43-74 37-67 (72)
163 cd08326 CARD_CASP9 Caspase act 49.0 55 0.0012 19.3 4.5 49 41-95 27-75 (84)
164 PF07879 PHB_acc_N: PHB/PHA ac 48.9 39 0.00085 19.1 3.3 22 35-56 10-31 (64)
165 PHA03155 hypothetical protein; 48.3 69 0.0015 20.3 5.6 90 1-94 1-90 (115)
166 PRK13344 spxA transcriptional 47.6 60 0.0013 20.7 4.6 57 42-102 34-93 (132)
167 TIGR01616 nitro_assoc nitrogen 47.0 60 0.0013 20.6 4.5 58 42-102 35-92 (126)
168 KOG1707 Predicted Ras related/ 46.4 52 0.0011 26.8 4.9 65 26-91 193-263 (625)
169 PF09336 Vps4_C: Vps4 C termin 45.2 40 0.00088 18.7 3.1 26 44-70 29-54 (62)
170 PF05099 TerB: Tellurite resis 44.8 7.9 0.00017 24.5 0.2 51 41-92 36-88 (140)
171 PTZ00373 60S Acidic ribosomal 44.6 79 0.0017 19.9 5.2 53 31-89 6-58 (112)
172 PF03979 Sigma70_r1_1: Sigma-7 44.0 25 0.00054 20.5 2.3 34 41-77 18-51 (82)
173 cd01671 CARD Caspase activatio 43.4 61 0.0013 18.2 3.9 49 41-95 24-72 (80)
174 KOG0035 Ca2+-binding actin-bun 43.4 98 0.0021 26.6 6.1 47 5-52 802-848 (890)
175 PF07308 DUF1456: Protein of u 42.6 64 0.0014 18.3 5.5 28 47-75 16-43 (68)
176 COG5502 Uncharacterized conser 41.4 1E+02 0.0022 20.1 5.8 50 4-57 72-124 (135)
177 PRK12559 transcriptional regul 40.6 97 0.0021 19.8 5.1 57 42-102 34-93 (131)
178 KOG1954 Endocytosis/signaling 40.1 49 0.0011 25.8 3.7 53 32-88 448-500 (532)
179 PF09373 PMBR: Pseudomurein-bi 40.1 33 0.0007 16.4 1.9 16 79-94 2-17 (33)
180 PF08349 DUF1722: Protein of u 39.8 93 0.002 19.3 5.1 44 49-93 54-97 (117)
181 PF05517 p25-alpha: p25-alpha 38.7 1.1E+02 0.0025 20.0 5.2 54 5-58 16-71 (154)
182 cd08324 CARD_NOD1_CARD4 Caspas 38.5 88 0.0019 18.7 4.9 49 40-94 25-73 (85)
183 cd08819 CARD_MDA5_2 Caspase ac 38.0 92 0.002 18.8 5.7 53 41-97 30-82 (88)
184 PF11020 DUF2610: Domain of un 37.6 42 0.00091 19.8 2.4 42 51-93 35-77 (82)
185 KOG2871 Uncharacterized conser 37.5 39 0.00085 26.0 2.9 52 62-113 306-358 (449)
186 PRK01655 spxA transcriptional 37.4 1.1E+02 0.0024 19.4 5.1 57 42-102 34-93 (131)
187 PF03960 ArsC: ArsC family; I 37.2 43 0.00093 20.4 2.7 59 42-102 30-90 (110)
188 COG4103 Uncharacterized protei 36.8 91 0.002 20.6 4.1 58 32-93 34-94 (148)
189 KOG0998 Synaptic vesicle prote 36.5 23 0.00049 30.0 1.6 62 29-93 12-73 (847)
190 TIGR00624 tag DNA-3-methyladen 35.7 18 0.0004 24.6 0.9 67 27-96 52-121 (179)
191 PF08414 NADPH_Ox: Respiratory 35.7 1.1E+02 0.0024 18.9 4.5 60 29-94 31-93 (100)
192 KOG4301 Beta-dystrobrevin [Cyt 35.7 69 0.0015 24.5 3.8 67 33-101 115-184 (434)
193 PRK09430 djlA Dna-J like membr 35.4 92 0.002 22.5 4.5 52 40-93 67-120 (267)
194 cd03033 ArsC_15kD Arsenate Red 35.1 1.1E+02 0.0024 18.9 4.6 58 42-102 34-91 (113)
195 TIGR00135 gatC glutamyl-tRNA(G 35.0 71 0.0015 18.9 3.3 27 45-72 1-27 (93)
196 PF10897 DUF2713: Protein of u 33.9 1E+02 0.0022 21.7 4.2 19 5-23 175-193 (246)
197 KOG1955 Ral-GTPase effector RA 33.9 47 0.001 26.7 2.9 31 26-56 263-293 (737)
198 PF00427 PBS_linker_poly: Phyc 33.2 1.3E+02 0.0027 19.5 4.4 15 5-19 42-56 (131)
199 PRK10353 3-methyl-adenine DNA 33.2 16 0.00035 25.1 0.2 87 9-98 36-126 (187)
200 TIGR02675 tape_meas_nterm tape 33.0 63 0.0014 18.5 2.8 17 40-56 26-42 (75)
201 PF08044 DUF1707: Domain of un 32.9 78 0.0017 16.9 2.9 30 42-72 21-50 (53)
202 PF14337 DUF4393: Domain of un 32.7 1.4E+02 0.0031 19.9 4.9 46 49-96 18-68 (186)
203 cd03032 ArsC_Spx Arsenate Redu 32.6 1.2E+02 0.0026 18.6 4.9 57 42-102 34-93 (115)
204 cd03034 ArsC_ArsC Arsenate Red 32.5 1.2E+02 0.0026 18.5 5.2 57 42-102 33-92 (112)
205 cd03036 ArsC_like Arsenate Red 32.5 1.2E+02 0.0026 18.5 4.8 57 43-102 34-94 (111)
206 cd05833 Ribosomal_P2 Ribosomal 32.3 1.3E+02 0.0028 18.8 5.2 56 32-93 5-60 (109)
207 COG5562 Phage envelope protein 30.8 39 0.00085 22.0 1.7 22 72-93 79-100 (137)
208 PF14297 DUF4373: Domain of un 30.6 78 0.0017 18.5 2.9 33 40-75 39-71 (87)
209 cd08785 CARD_CARD9-like Caspas 29.9 89 0.0019 18.6 3.1 55 41-98 27-81 (86)
210 PRK00034 gatC aspartyl/glutamy 29.3 1E+02 0.0023 18.2 3.4 29 44-73 2-30 (95)
211 PRK14981 DNA-directed RNA poly 28.5 1.2E+02 0.0026 18.9 3.6 27 61-91 78-104 (112)
212 PRK10853 putative reductase; P 28.4 72 0.0016 20.0 2.6 57 42-103 34-94 (118)
213 PF07128 DUF1380: Protein of u 27.9 1.1E+02 0.0023 20.1 3.4 49 45-94 27-80 (139)
214 PF12091 DUF3567: Protein of u 27.8 80 0.0017 18.9 2.5 45 31-75 26-75 (85)
215 PF02761 Cbl_N2: CBL proto-onc 27.8 1.4E+02 0.0031 17.8 4.7 49 43-92 21-69 (85)
216 PF11829 DUF3349: Protein of u 27.3 85 0.0019 19.2 2.7 30 45-75 20-49 (96)
217 PF01325 Fe_dep_repress: Iron 26.6 1.2E+02 0.0026 16.5 4.1 41 27-75 7-47 (60)
218 PF11116 DUF2624: Protein of u 26.4 1.5E+02 0.0033 17.7 6.0 33 43-76 13-45 (85)
219 PF01756 ACOX: Acyl-CoA oxidas 26.3 1.3E+02 0.0028 20.2 3.8 38 77-116 149-186 (187)
220 cd07176 terB tellurite resista 26.2 37 0.00079 20.3 1.0 8 5-12 16-23 (111)
221 PF07499 RuvA_C: RuvA, C-termi 25.7 1.1E+02 0.0023 15.7 3.7 38 48-90 4-41 (47)
222 KOG1265 Phospholipase C [Lipid 25.6 3.1E+02 0.0068 24.0 6.3 48 49-100 209-258 (1189)
223 KOG0871 Class 2 transcription 25.6 74 0.0016 21.1 2.3 39 33-72 55-93 (156)
224 PF12767 SAGA-Tad1: Transcript 25.6 2.4E+02 0.0053 20.0 5.2 52 2-57 3-54 (252)
225 KOG4004 Matricellular protein 25.3 43 0.00093 23.6 1.3 57 33-92 192-249 (259)
226 PRK08181 transposase; Validate 23.9 2E+02 0.0044 20.8 4.6 47 42-92 4-50 (269)
227 TIGR01617 arsC_related transcr 23.6 1.5E+02 0.0033 18.1 3.5 58 42-102 33-94 (117)
228 cd08323 CARD_APAF1 Caspase act 23.5 1.7E+02 0.0037 17.3 4.3 48 41-94 25-72 (86)
229 cd02977 ArsC_family Arsenate R 23.5 1.7E+02 0.0038 17.4 5.6 58 42-102 33-93 (105)
230 PLN02508 magnesium-protoporphy 23.4 95 0.0021 23.5 2.8 72 28-100 41-114 (357)
231 PF13623 SurA_N_2: SurA N-term 23.3 2E+02 0.0044 18.7 4.1 21 50-71 95-115 (145)
232 PF00690 Cation_ATPase_N: Cati 23.3 1.4E+02 0.003 16.4 3.0 17 61-77 20-36 (69)
233 PF10668 Phage_terminase: Phag 23.0 1.5E+02 0.0032 16.4 3.1 31 31-68 10-40 (60)
234 TIGR03412 iscX_yfhJ FeS assemb 22.9 1.6E+02 0.0034 16.6 4.0 45 69-114 11-55 (63)
235 PF10208 Armet: Degradation ar 22.8 1.9E+02 0.0041 19.3 3.9 37 61-97 106-142 (154)
236 PF04282 DUF438: Family of unk 22.5 1.7E+02 0.0036 16.8 4.1 47 19-70 7-54 (71)
237 COG1460 Uncharacterized protei 22.2 2E+02 0.0044 18.2 3.7 15 6-20 11-25 (114)
238 PF13099 DUF3944: Domain of un 22.2 1E+02 0.0022 15.2 1.9 21 61-81 12-32 (35)
239 PF12419 DUF3670: SNF2 Helicas 22.0 2.3E+02 0.005 18.2 4.3 28 62-89 109-137 (141)
240 PF03963 FlgD: Flagellar hook 21.9 1.1E+02 0.0024 17.9 2.5 20 4-23 27-46 (81)
241 PF03352 Adenine_glyco: Methyl 21.8 17 0.00036 24.9 -1.3 69 27-96 48-119 (179)
242 PF03874 RNA_pol_Rpb4: RNA pol 21.6 1.1E+02 0.0023 18.8 2.5 53 29-91 58-110 (117)
243 PF07261 DnaB_2: Replication i 21.6 1E+02 0.0022 17.1 2.2 42 34-75 2-43 (77)
244 PF08006 DUF1700: Protein of u 21.0 1E+02 0.0023 20.5 2.5 15 9-23 2-16 (181)
245 PF03997 VPS28: VPS28 protein; 20.8 2.7E+02 0.0059 19.2 4.5 43 42-91 140-187 (188)
246 PF04384 Fe-S_assembly: Iron-s 20.7 1.8E+02 0.0039 16.4 3.6 45 69-114 12-56 (64)
247 PF05872 DUF853: Bacterial pro 20.6 2.2E+02 0.0048 22.8 4.4 52 8-59 106-159 (502)
248 TIGR01446 DnaD_dom DnaD and ph 20.3 1.1E+02 0.0024 16.9 2.2 14 62-75 30-43 (73)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.81 E-value=3.3e-19 Score=118.01 Aligned_cols=89 Identities=28% Similarity=0.334 Sum_probs=85.2
Q ss_pred CCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 033455 4 LLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALS 83 (119)
Q Consensus 4 ~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~ 83 (119)
+.+.|+|.+|+.+|...+......++++++|++||++++|+|+..+|..++..+|. .+++++++.+++.++.+++|.|+
T Consensus 68 ~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge-~~~deev~~ll~~~d~d~dG~i~ 146 (160)
T COG5126 68 GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE-RLSDEEVEKLLKEYDEDGDGEID 146 (160)
T ss_pred CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc-cCCHHHHHHHHHhcCCCCCceEe
Confidence 46899999999999999988888999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHh
Q 033455 84 QFEFCILMVR 93 (119)
Q Consensus 84 ~~eF~~~l~~ 93 (119)
|++|++.+..
T Consensus 147 ~~eF~~~~~~ 156 (160)
T COG5126 147 YEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHhc
Confidence 9999998865
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.75 E-value=1.1e-17 Score=110.56 Aligned_cols=91 Identities=29% Similarity=0.298 Sum_probs=82.7
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcch----HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGF----ISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLD 77 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~----~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~ 77 (119)
.+++|.|+|++|+.++......... .+.++++|+.||++++|+|+.++|+.++..+|. +.+.++++.+++.+|.+
T Consensus 55 ~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~-~~~~~e~~~mi~~~d~d 133 (151)
T KOG0027|consen 55 LDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE-KLTDEECKEMIREVDVD 133 (151)
T ss_pred CCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC-cCCHHHHHHHHHhcCCC
Confidence 3578999999999999987754433 348999999999999999999999999999999 99999999999999999
Q ss_pred CCCcccHHHHHHHHHh
Q 033455 78 GDGALSQFEFCILMVR 93 (119)
Q Consensus 78 ~dg~I~~~eF~~~l~~ 93 (119)
+||.|+|.+|+.+|..
T Consensus 134 ~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 134 GDGKVNFEEFVKMMSG 149 (151)
T ss_pred CCCeEeHHHHHHHHhc
Confidence 9999999999999864
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.6e-16 Score=102.48 Aligned_cols=91 Identities=31% Similarity=0.430 Sum_probs=86.8
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGAL 82 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I 82 (119)
.+.|.|+|++|...|+.++......+++..+|+++|.+++|+|++.+|+.+...+|+ +++++++++++..++.+++|-|
T Consensus 81 ~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge-nltD~El~eMIeEAd~d~dgev 159 (172)
T KOG0028|consen 81 EGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE-NLTDEELMEMIEEADRDGDGEV 159 (172)
T ss_pred ccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc-cccHHHHHHHHHHhcccccccc
Confidence 467999999999999999998888899999999999999999999999999999999 9999999999999999999999
Q ss_pred cHHHHHHHHHhc
Q 033455 83 SQFEFCILMVRL 94 (119)
Q Consensus 83 ~~~eF~~~l~~~ 94 (119)
+-+||..+|+++
T Consensus 160 neeEF~~imk~t 171 (172)
T KOG0028|consen 160 NEEEFIRIMKKT 171 (172)
T ss_pred cHHHHHHHHhcC
Confidence 999999999764
No 4
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.66 E-value=1.3e-15 Score=99.29 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=88.0
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGA 81 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~ 81 (119)
+..+|+|+|..|+.++..++....+++.+..+|+.||++++|+|..+.|+.+|...|. +++++||+.+++.+..+..|.
T Consensus 75 ~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD-r~~~eEV~~m~r~~p~d~~G~ 153 (171)
T KOG0031|consen 75 KEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD-RFTDEEVDEMYREAPIDKKGN 153 (171)
T ss_pred HhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc-cCCHHHHHHHHHhCCcccCCc
Confidence 6789999999999999999998899999999999999999999999999999999999 999999999999999999999
Q ss_pred ccHHHHHHHHHhc
Q 033455 82 LSQFEFCILMVRL 94 (119)
Q Consensus 82 I~~~eF~~~l~~~ 94 (119)
|+|.+|+.++...
T Consensus 154 ~dy~~~~~~ithG 166 (171)
T KOG0031|consen 154 FDYKAFTYIITHG 166 (171)
T ss_pred eeHHHHHHHHHcc
Confidence 9999999999743
No 5
>PTZ00183 centrin; Provisional
Probab=99.59 E-value=2.7e-14 Score=93.85 Aligned_cols=90 Identities=32% Similarity=0.484 Sum_probs=79.8
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGAL 82 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I 82 (119)
+++|.|++++|...+............++.+|+.+|++++|.|+.++|..++..++. +++..++..++..++.+++|.|
T Consensus 65 ~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~l~~~~~~~~~~~~d~~~~g~i 143 (158)
T PTZ00183 65 DGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE-TITDEELQEMIDEADRNGDGEI 143 (158)
T ss_pred CCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcC
Confidence 578889999999887765444455678899999999999999999999999999998 9999999999999999999999
Q ss_pred cHHHHHHHHHh
Q 033455 83 SQFEFCILMVR 93 (119)
Q Consensus 83 ~~~eF~~~l~~ 93 (119)
+|.+|..++..
T Consensus 144 ~~~ef~~~~~~ 154 (158)
T PTZ00183 144 SEEEFYRIMKK 154 (158)
T ss_pred cHHHHHHHHhc
Confidence 99999999865
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.58 E-value=4.5e-14 Score=91.72 Aligned_cols=89 Identities=25% Similarity=0.380 Sum_probs=77.7
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGAL 82 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I 82 (119)
+++|.|++++|+..+............+..+|+.+|.+++|+|+.+++..++..++. .++.++++.++..++.+++|.|
T Consensus 59 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i 137 (149)
T PTZ00184 59 DGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADVDGDGQI 137 (149)
T ss_pred CCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC-CCCHHHHHHHHHhcCCCCCCcC
Confidence 567889999999888766543345567889999999999999999999999999988 8999999999999999999999
Q ss_pred cHHHHHHHHH
Q 033455 83 SQFEFCILMV 92 (119)
Q Consensus 83 ~~~eF~~~l~ 92 (119)
+|.||+.++.
T Consensus 138 ~~~ef~~~~~ 147 (149)
T PTZ00184 138 NYEEFVKMMM 147 (149)
T ss_pred cHHHHHHHHh
Confidence 9999998875
No 7
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.57 E-value=2.7e-14 Score=97.21 Aligned_cols=97 Identities=26% Similarity=0.329 Sum_probs=79.5
Q ss_pred CCCCC-ccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCC--HHH----HHHHHHhcC
Q 033455 3 TLLFD-HDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMM--DDE----IVCMLSEGD 75 (119)
Q Consensus 3 ~~~g~-i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~--~~e----~~~l~~~~d 75 (119)
..+|. |+|++|+..++.........++++.+|++||.+++|+|+.+++..++..+-....+ ++. ++.++..+|
T Consensus 78 ~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D 157 (187)
T KOG0034|consen 78 DGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEAD 157 (187)
T ss_pred cCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhC
Confidence 34455 99999999999988776666799999999999999999999999999986331444 444 456788999
Q ss_pred CCCCCcccHHHHHHHHHhcCcCccC
Q 033455 76 LDGDGALSQFEFCILMVRLSPGLME 100 (119)
Q Consensus 76 ~~~dg~I~~~eF~~~l~~~~~~~~~ 100 (119)
.++||+|+|+||++++.+ .|.+.+
T Consensus 158 ~d~DG~IsfeEf~~~v~~-~P~~~~ 181 (187)
T KOG0034|consen 158 TDGDGKISFEEFCKVVEK-QPDLLE 181 (187)
T ss_pred CCCCCcCcHHHHHHHHHc-CccHHH
Confidence 999999999999999976 455544
No 8
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.54 E-value=3.2e-14 Score=86.27 Aligned_cols=67 Identities=24% Similarity=0.223 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhcC-CCCCcccHHHHHHHHHh-cCCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 27 ISELCYGFQRLMD-GEKGLITFESLKRNSLL-LGLNDMMD-DEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 27 ~~~~~~~F~~~D~-~~~G~I~~~el~~~l~~-~~~~~~~~-~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
...+..+|+.||+ +++|+|+..+|+.++.. +|. .++. .+++++++.+|.|+||.|+|+||+.+|.+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~-~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPH-LLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh-hccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3568899999999 99999999999999999 887 7888 899999999999999999999999998764
No 9
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.50 E-value=1.1e-13 Score=79.18 Aligned_cols=62 Identities=37% Similarity=0.463 Sum_probs=54.6
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHH----HHHHHhcCCCCCCcccHHHHHHHH
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEI----VCMLSEGDLDGDGALSQFEFCILM 91 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~----~~l~~~~d~~~dg~I~~~eF~~~l 91 (119)
+++++|+.+|++++|+|+.+||..++..++. ..++.++ +.+++.+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGR-DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTS-HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999987 6656554 455999999999999999999875
No 10
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.46 E-value=6.3e-13 Score=80.49 Aligned_cols=67 Identities=18% Similarity=0.116 Sum_probs=61.1
Q ss_pred HHHHHHHHhhhc-CCCCC-cccHHHHHHHHHh-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 27 ISELCYGFQRLM-DGEKG-LITFESLKRNSLL-----LGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 27 ~~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~-----~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
...+..+|+.|| ++++| +|+..+|+.++.. +|. ..++++++++++.+|.|++|+|+|++|+.++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~-~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE-IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 356889999998 79999 5999999999999 888 8899999999999999999999999999988653
No 11
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.43 E-value=8.9e-13 Score=85.71 Aligned_cols=97 Identities=23% Similarity=0.312 Sum_probs=81.6
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHH----HHHHHhcCCCC
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEI----VCMLSEGDLDG 78 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~----~~l~~~~d~~~ 78 (119)
++.|.++|++|+..++......+..-++..+|++||-|++++|...+|...+..+-.+.++++|+ ++++...|.|+
T Consensus 83 DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~Dg 162 (189)
T KOG0038|consen 83 DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDG 162 (189)
T ss_pred CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCC
Confidence 57889999999999988765433344677899999999999999999999999986657899886 55688999999
Q ss_pred CCcccHHHHHHHHHhcCcCccC
Q 033455 79 DGALSQFEFCILMVRLSPGLME 100 (119)
Q Consensus 79 dg~I~~~eF~~~l~~~~~~~~~ 100 (119)
||++++.+|.+++.+ .|+++.
T Consensus 163 Dgkl~~~eFe~~i~r-aPDFls 183 (189)
T KOG0038|consen 163 DGKLSFAEFEHVILR-APDFLS 183 (189)
T ss_pred CCcccHHHHHHHHHh-CcchHh
Confidence 999999999999976 466543
No 12
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.40 E-value=1.6e-12 Score=88.80 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=76.8
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc----CC------CCCCHHHHHHHH
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL----GL------NDMMDDEIVCML 71 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~----~~------~~~~~~e~~~l~ 71 (119)
++++|.|+|.+|+..+...+.. ...+.+.++|++||.+++|+|+.+|+..++..+ +. ....++-+..+|
T Consensus 75 ~~~dg~i~F~Efi~als~~~rG-t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if 153 (193)
T KOG0044|consen 75 KNKDGTIDFLEFICALSLTSRG-TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIF 153 (193)
T ss_pred ccCCCCcCHHHHHHHHHHHcCC-cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHH
Confidence 4678999999999988887754 556788899999999999999999988777753 21 012345578899
Q ss_pred HhcCCCCCCcccHHHHHHHHHhcCcCccCC
Q 033455 72 SEGDLDGDGALSQFEFCILMVRLSPGLMEG 101 (119)
Q Consensus 72 ~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~ 101 (119)
+.+|.|+||.|+++||...... .|.+++.
T Consensus 154 ~k~D~n~Dg~lT~eef~~~~~~-d~~i~~~ 182 (193)
T KOG0044|consen 154 SKMDKNKDGKLTLEEFIEGCKA-DPSILRA 182 (193)
T ss_pred HHcCCCCCCcccHHHHHHHhhh-CHHHHHH
Confidence 9999999999999999988754 5665554
No 13
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.39 E-value=2.9e-12 Score=82.48 Aligned_cols=86 Identities=19% Similarity=0.331 Sum_probs=74.9
Q ss_pred CCccHHHHHHHHHHhcCC--cchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 033455 6 FDHDFEDYFPSMIKRLGA--EGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALS 83 (119)
Q Consensus 6 g~i~~~eF~~~~~~~~~~--~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~ 83 (119)
.+|+|++|+.++.....+ ...-++..+..+.||++++|.|...+|+++|..+|. +++++|++.+++-.. |++|.|+
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe-kl~eeEVe~Llag~e-D~nG~i~ 141 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE-KLTEEEVEELLAGQE-DSNGCIN 141 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh-hccHHHHHHHHcccc-ccCCcCc
Confidence 479999999998876643 344577889999999999999999999999999999 999999999998644 7789999
Q ss_pred HHHHHHHHHh
Q 033455 84 QFEFCILMVR 93 (119)
Q Consensus 84 ~~eF~~~l~~ 93 (119)
|+.|++.+..
T Consensus 142 YE~fVk~i~~ 151 (152)
T KOG0030|consen 142 YEAFVKHIMS 151 (152)
T ss_pred HHHHHHHHhc
Confidence 9999987653
No 14
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.37 E-value=3.1e-12 Score=78.22 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhcC-CC-CCcccHHHHHHHHHh-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 27 ISELCYGFQRLMD-GE-KGLITFESLKRNSLL-----LGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 27 ~~~~~~~F~~~D~-~~-~G~I~~~el~~~l~~-----~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
...++.+|..||. ++ +|+|+.++++.++.. +|. ..++++++.+++.+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~-~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN-QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc-cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4568899999997 87 799999999999986 566 7889999999999999999999999999988753
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.35 E-value=6.2e-12 Score=76.85 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=57.0
Q ss_pred HHHHHHHhhhc-CCCCC-cccHHHHHHHHHh-c----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 28 SELCYGFQRLM-DGEKG-LITFESLKRNSLL-L----GLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 28 ~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~-~----~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
..+.++|+.|| ++++| +|+..||+.++.. + +. ..++.+++++++.+|.+++|.|+|+||+.++..+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~-~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSS-QKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccc-ccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 46778899999 78998 5999999999976 2 33 4577899999999999999999999999998764
No 16
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.35 E-value=7.3e-12 Score=76.27 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhc-CCCCC-cccHHHHHHHHHh-cC----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 27 ISELCYGFQRLM-DGEKG-LITFESLKRNSLL-LG----LNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 27 ~~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~-~~----~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
.+.++++|+.|| ++++| +|+..+|+.++.. +| . ..++++++.+++.+|.+++|.|+|++|+.++...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~-~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDA-QKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 356899999997 99999 5999999999975 44 3 4588899999999999999999999999988754
No 17
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.34 E-value=1.4e-11 Score=84.73 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=76.5
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGA 81 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~ 81 (119)
.+.+|+|+|.||..+... ...++.+|+.||.|+.|.|+..||+.+|..+|. .++++-.+.+++.++..++|.
T Consensus 105 ~~~~G~i~f~EF~~Lw~~-------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy-~Lspq~~~~lv~kyd~~~~g~ 176 (221)
T KOG0037|consen 105 RDNSGTIGFKEFKALWKY-------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGY-RLSPQFYNLLVRKYDRFGGGR 176 (221)
T ss_pred CCCCCccCHHHHHHHHHH-------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCc-CCCHHHHHHHHHHhccccCCc
Confidence 567899999999977643 357899999999999999999999999999999 999999999999999888999
Q ss_pred ccHHHHHHHHHhc
Q 033455 82 LSQFEFCILMVRL 94 (119)
Q Consensus 82 I~~~eF~~~l~~~ 94 (119)
|.|++|+.++..+
T Consensus 177 i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 177 IDFDDFIQCCVVL 189 (221)
T ss_pred eeHHHHHHHHHHH
Confidence 9999999987653
No 18
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.33 E-value=1.1e-11 Score=74.98 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=59.3
Q ss_pred HHHHHHHhhhcC-CC-CCcccHHHHHHHHH---hcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 28 SELCYGFQRLMD-GE-KGLITFESLKRNSL---LLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 28 ~~~~~~F~~~D~-~~-~G~I~~~el~~~l~---~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
..+..+|+.||. ++ +|+|+.+||+.++. .+|. +++++++.++++.+|.+++|+|+|+||+.++...
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~-k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGS-KLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 457789999997 67 89999999999996 3688 8999999999999999999999999999998764
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-11 Score=81.70 Aligned_cols=68 Identities=35% Similarity=0.408 Sum_probs=64.2
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 26 FISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 26 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
....++.+|+.||++++|+|+..+|..+++.+|. .+++.++..+++.+|.+++|+|++++|+.++...
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~-~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQ-NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 3467899999999999999999999999999999 9999999999999999999999999999999864
No 20
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=2.3e-11 Score=83.09 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=82.0
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGAL 82 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I 82 (119)
+.+|.++.++|..+++...+......-...+|+.||++++|.|+..||..+++.+.. +..++.+++.|+.+|.|++|+|
T Consensus 39 cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 39 CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceE
Confidence 458999999999999998886666777889999999999999999999999999888 8888889999999999999999
Q ss_pred cHHHHHHHHHh
Q 033455 83 SQFEFCILMVR 93 (119)
Q Consensus 83 ~~~eF~~~l~~ 93 (119)
++.|+.+++..
T Consensus 118 t~~Eml~iv~~ 128 (193)
T KOG0044|consen 118 TKEEMLKIVQA 128 (193)
T ss_pred cHHHHHHHHHH
Confidence 99999998865
No 21
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.27 E-value=2.7e-11 Score=73.04 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=59.3
Q ss_pred hHHHHHHHHhhhcC--CCCCcccHHHHHHHHHh-cCCCCC----CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 26 FISELCYGFQRLMD--GEKGLITFESLKRNSLL-LGLNDM----MDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 26 ~~~~~~~~F~~~D~--~~~G~I~~~el~~~l~~-~~~~~~----~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
..+.++.+|..||+ +++|.|+..+|..++.. +|. ++ ++.+++.++..++.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~-~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPN-FLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhh-hccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 34568899999999 89999999999999976 554 33 58899999999999999999999999998764
No 22
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.26 E-value=4.2e-11 Score=73.44 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=59.2
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 25 GFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
+....++.+|..||++++|.|+.++++.++... +++++++++++..++.+++|.|+|++|+.++..
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 445678999999999999999999999999885 467889999999999999999999999987764
No 23
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.24 E-value=4.1e-11 Score=65.86 Aligned_cols=52 Identities=37% Similarity=0.521 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHhcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 41 EKGLITFESLKRNSLLLGLND-MMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~~-~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
.+|.|+.++|+.++..+|. + +++++++.++..+|.+++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~-~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI-KDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS-SSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC-CCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3799999999999988898 8 99999999999999999999999999999864
No 24
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.22 E-value=9e-11 Score=66.78 Aligned_cols=60 Identities=25% Similarity=0.221 Sum_probs=54.7
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 31 CYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 31 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
+.+|..+|++++|.|+.+++..++..+| .++++++.+++.++.+++|.|+|.+|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5789999999999999999999998865 47888999999999999999999999998864
No 25
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.22 E-value=1e-10 Score=70.91 Aligned_cols=67 Identities=21% Similarity=0.120 Sum_probs=57.9
Q ss_pred HHHHHHHHhh-hcCCCCC-cccHHHHHHHHHhc-----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 27 ISELCYGFQR-LMDGEKG-LITFESLKRNSLLL-----GLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 27 ~~~~~~~F~~-~D~~~~G-~I~~~el~~~l~~~-----~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
...+..+|+. +|++++| +|+.+||+.++..- +. +.++.+++++++.+|.|+||.|+|+||+.++...
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~-~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKN-QKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcC-CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4568899999 7788876 99999999999875 33 5677899999999999999999999999988764
No 26
>PTZ00183 centrin; Provisional
Probab=99.18 E-value=6.6e-10 Score=72.87 Aligned_cols=96 Identities=18% Similarity=0.032 Sum_probs=77.4
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc-CCCCCCHHHHHHHHHhcCCCCCC
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL-GLNDMMDDEIVCMLSEGDLDGDG 80 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~~~~~e~~~l~~~~d~~~dg 80 (119)
.+++|.|+.++|..++... +.......+..+|..+|.+++|.|+..+|..++... .. ...+++++.+|+.+|.+++|
T Consensus 28 ~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~-~~~~~~l~~~F~~~D~~~~G 105 (158)
T PTZ00183 28 TDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE-RDPREEILKAFRLFDDDKTG 105 (158)
T ss_pred CCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC-CCcHHHHHHHHHHhCCCCCC
Confidence 4678999999999888654 222344578899999999999999999999887664 33 56777899999999999999
Q ss_pred cccHHHHHHHHHhcCcCcc
Q 033455 81 ALSQFEFCILMVRLSPGLM 99 (119)
Q Consensus 81 ~I~~~eF~~~l~~~~~~~~ 99 (119)
.|+..+|..++....+.+.
T Consensus 106 ~i~~~e~~~~l~~~~~~l~ 124 (158)
T PTZ00183 106 KISLKNLKRVAKELGETIT 124 (158)
T ss_pred cCcHHHHHHHHHHhCCCCC
Confidence 9999999999876544433
No 27
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.15 E-value=3.5e-10 Score=62.32 Aligned_cols=61 Identities=34% Similarity=0.419 Sum_probs=57.1
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033455 30 LCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILM 91 (119)
Q Consensus 30 ~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l 91 (119)
+..+|..+|.+++|.|+..++..++..++. +.+...+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE-GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999999999998 8999999999999999999999999998765
No 28
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.12 E-value=4.2e-10 Score=71.33 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=54.0
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 26 FISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 26 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
....+..+|..+|.|++|+|+.+||..+. . ...+..+..++..+|.|+||.||++||+.++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l-~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----L-DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----c-cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34568899999999999999999999876 2 34566789999999999999999999999984
No 29
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.11 E-value=5.4e-10 Score=74.24 Aligned_cols=66 Identities=29% Similarity=0.304 Sum_probs=41.4
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 26 FISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 26 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
..++++++|..+|++++|.|+..+|..+++.+|. +.++.++.+++...+. +.+.|+|.+|+.+|..
T Consensus 18 qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~-~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~ 83 (160)
T COG5126 18 QIQELKEAFQLFDRDSDGLIDRNELGKILRSLGF-NPSEAEINKLFEEIDA-GNETVDFPEFLTVMSV 83 (160)
T ss_pred HHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC-CCcHHHHHHHHHhccC-CCCccCHHHHHHHHHH
Confidence 3455666666666666666666666666666666 6666666666666665 5566666666666654
No 30
>PTZ00184 calmodulin; Provisional
Probab=99.11 E-value=1.7e-09 Score=70.02 Aligned_cols=96 Identities=19% Similarity=0.067 Sum_probs=75.5
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGA 81 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~ 81 (119)
++++|.|+.++|..++... +.....+.+..+|..+|.+++|.|+.++|..++............+..+|+.+|.+++|.
T Consensus 22 ~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~ 100 (149)
T PTZ00184 22 KDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGF 100 (149)
T ss_pred CCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCe
Confidence 4678999999999877543 322345678899999999999999999999888764321445567889999999999999
Q ss_pred ccHHHHHHHHHhcCcCc
Q 033455 82 LSQFEFCILMVRLSPGL 98 (119)
Q Consensus 82 I~~~eF~~~l~~~~~~~ 98 (119)
|+.++|..++....+.+
T Consensus 101 i~~~e~~~~l~~~~~~~ 117 (149)
T PTZ00184 101 ISAAELRHVMTNLGEKL 117 (149)
T ss_pred EeHHHHHHHHHHHCCCC
Confidence 99999999887654443
No 31
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.06 E-value=1.2e-09 Score=81.38 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=78.8
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGA 81 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~ 81 (119)
++.+|.+||++|..-+... +.++.++|+.+|.+.+|.|+.+|+...+..+|. ++++++++++++..|.++++.
T Consensus 62 ~~~dg~vDy~eF~~Y~~~~------E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi-~l~de~~~k~~e~~d~~g~~~ 134 (463)
T KOG0036|consen 62 ANRDGRVDYSEFKRYLDNK------ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGI-QLSDEKAAKFFEHMDKDGKAT 134 (463)
T ss_pred cCcCCcccHHHHHHHHHHh------HHHHHHHHhhhccccCCccCHHHHHHHHHHhCC-ccCHHHHHHHHHHhccCCCee
Confidence 6789999999999887543 457899999999999999999999999999999 999999999999999999999
Q ss_pred ccHHHHHHHHHhc
Q 033455 82 LSQFEFCILMVRL 94 (119)
Q Consensus 82 I~~~eF~~~l~~~ 94 (119)
|++.|+...+...
T Consensus 135 I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 135 IDLEEWRDHLLLY 147 (463)
T ss_pred eccHHHHhhhhcC
Confidence 9999999987654
No 32
>PF14658 EF-hand_9: EF-hand domain
Probab=99.01 E-value=2.1e-09 Score=61.21 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=56.1
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCC-CcccHHHHHHHHHh
Q 033455 32 YGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGD-GALSQFEFCILMVR 93 (119)
Q Consensus 32 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~d-g~I~~~eF~~~l~~ 93 (119)
.+|..||.++.|.|...++...|+.++....++.+++.+.+.+|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 379999999999999999999999997635677889999999999987 99999999999974
No 33
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=8.4e-09 Score=68.04 Aligned_cols=97 Identities=24% Similarity=0.190 Sum_probs=77.7
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHh-cCCCCCCHHHHHHHHHhcCCCCCC
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLL-LGLNDMMDDEIVCMLSEGDLDGDG 80 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~-~~~~~~~~~e~~~l~~~~d~~~dg 80 (119)
..+.|+|+..++...+..+ +.....+++.++..-+|+++.|+|+.++|...+.. ++. .-+.+++...|+.+|.+++|
T Consensus 44 ~~~~g~iD~~EL~vAmral-GFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e-~dt~eEi~~afrl~D~D~~G 121 (172)
T KOG0028|consen 44 PDMAGKIDVEELKVAMRAL-GFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE-RDTKEEIKKAFRLFDDDKTG 121 (172)
T ss_pred cCCCCcccHHHHHHHHHHc-CCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc-cCcHHHHHHHHHcccccCCC
Confidence 4578899999986555444 44455667888888889999999999999888554 677 67889999999999999999
Q ss_pred cccHHHHHHHHHhcCcCccC
Q 033455 81 ALSQFEFCILMVRLSPGLME 100 (119)
Q Consensus 81 ~I~~~eF~~~l~~~~~~~~~ 100 (119)
+||+.+|+.+...+++.+.+
T Consensus 122 kis~~~lkrvakeLgenltD 141 (172)
T KOG0028|consen 122 KISQRNLKRVAKELGENLTD 141 (172)
T ss_pred CcCHHHHHHHHHHhCccccH
Confidence 99999999999998884443
No 34
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.98 E-value=2.8e-09 Score=64.44 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhcCC--CCCcccHHHHHHHHH-hcCCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 27 ISELCYGFQRLMDG--EKGLITFESLKRNSL-LLGLNDMM----DDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 27 ~~~~~~~F~~~D~~--~~G~I~~~el~~~l~-~~~~~~~~----~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
...+...|+.|+.. .+|+|+.++|+.++. .++. .++ +++++.+++.+|.+++|.|+|++|+.++...
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~-~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN-FLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH-hhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34677889999855 589999999999997 5565 566 8999999999999999999999999998754
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=98.88 E-value=2.3e-08 Score=79.01 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=60.6
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 30 LCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 30 ~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
+..+|..+|.+++|.|+.+||..++..++. ..+++++.++|+.+|.|++|.|+++||..++...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~-~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGN-LVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhcc-CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 789999999999999999999999999987 8899999999999999999999999999999874
No 36
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.79 E-value=2.5e-08 Score=64.46 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=63.1
Q ss_pred cchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC--CCCcccHHHHHHHHHhcCc
Q 033455 24 EGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLD--GDGALSQFEFCILMVRLSP 96 (119)
Q Consensus 24 ~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~--~dg~I~~~eF~~~l~~~~~ 96 (119)
++...+++++|.+||..++|+|+..+...+++.+|. ++++.++.+.+..+..+ +--+|+|++|+.++...+.
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~-nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQ-NPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcC-CCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999 99999999999888766 3468999999999876544
No 37
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.72 E-value=8.1e-08 Score=63.10 Aligned_cols=64 Identities=23% Similarity=0.299 Sum_probs=55.6
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 25 GFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
...++++++|.++|.|++|.|+.++|+..+..+|. ..+++++..++++.. |.|+|.-|+.++..
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk-~~~d~elDaM~~Ea~----gPINft~FLTmfGe 92 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGK-IASDEELDAMMKEAP----GPINFTVFLTMFGE 92 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhCC----CCeeHHHHHHHHHH
Confidence 45678999999999999999999999999999999 899999999887644 67888888777643
No 38
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=4.4e-08 Score=71.00 Aligned_cols=88 Identities=22% Similarity=0.142 Sum_probs=70.6
Q ss_pred CCCCCCccHHHHHHHHHHhcCCc---chHH-HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAE---GFIS-ELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLD 77 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~---~~~~-~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~ 77 (119)
++++|.|+++||+.-|...-++. .... +....|...|+|++|+++.+|++.++.--+. ...+.+.+.++...|.|
T Consensus 211 kn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~-d~A~~EA~hL~~eaD~d 289 (325)
T KOG4223|consen 211 KNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQ-DHAKAEARHLLHEADED 289 (325)
T ss_pred cCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCc-cHHHHHHHHHhhhhccC
Confidence 67899999999999888766421 1111 2334566779999999999999998877666 77888999999999999
Q ss_pred CCCcccHHHHHHH
Q 033455 78 GDGALSQFEFCIL 90 (119)
Q Consensus 78 ~dg~I~~~eF~~~ 90 (119)
+||++|++|-+.-
T Consensus 290 kD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 290 KDGKLSKEEILEH 302 (325)
T ss_pred ccccccHHHHhhC
Confidence 9999999987653
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=98.65 E-value=6.2e-08 Score=76.62 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=56.8
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC-CCCCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHHhcC
Q 033455 26 FISELCYGFQRLMDGEKGLITFESLKRNSLLLG-LNDMMDDE---IVCMLSEGDLDGDGALSQFEFCILMVRLS 95 (119)
Q Consensus 26 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~-~~~~~~~e---~~~l~~~~d~~~dg~I~~~eF~~~l~~~~ 95 (119)
..++++++|..+|++++|++ +..++..+| . ..++++ ++.+|+.+|.+++|.|+|+||+.++....
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~-~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIE-DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCC-CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 44679999999999999997 888888888 5 677766 89999999999999999999999998654
No 40
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.64 E-value=3.5e-07 Score=55.47 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=54.5
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHh-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 28 SELCYGFQRLMDGEKGLITFESLKRNSLL-----LGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 28 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~-----~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
..+..+|+.|- .+++.++..||+.++.. +.. +..+..++++++..|.|+||.|+|.||+.++...
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45778899988 55679999999999865 233 5567889999999999999999999999998764
No 41
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.62 E-value=1.8e-07 Score=63.97 Aligned_cols=70 Identities=27% Similarity=0.292 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 033455 26 FISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSP 96 (119)
Q Consensus 26 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~ 96 (119)
........|+.||.+.||+|+..||+..+..+|. +-++--++++++..|.|.+|+|+|-+|.=++...-.
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-pQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGA-PQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCC-chhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 3456788999999999999999999999999998 878888999999999999999999999988866433
No 42
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.61 E-value=7.4e-08 Score=46.40 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=15.8
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHh
Q 033455 30 LCYGFQRLMDGEKGLITFESLKRNSLL 56 (119)
Q Consensus 30 ~~~~F~~~D~~~~G~I~~~el~~~l~~ 56 (119)
++.+|+.||+|++|+|+.+||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 445566666666666666666655543
No 43
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.56 E-value=9.9e-08 Score=45.95 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 66 EIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 66 e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
|++++|+.+|.|+||.|+++||+.+|.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999999875
No 44
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.55 E-value=3.8e-07 Score=49.83 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=43.5
Q ss_pred CCCCccHHHHHHHHHHhcCCc-chHHHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 033455 4 LLFDHDFEDYFPSMIKRLGAE-GFISELCYGFQRLMDGEKGLITFESLKRNSLL 56 (119)
Q Consensus 4 ~~g~i~~~eF~~~~~~~~~~~-~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 56 (119)
.+|.|+.++|..++ ..++.. -..+.+..+|..+|.+++|+|+.+||..++..
T Consensus 1 ~~G~i~~~~~~~~l-~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRAL-SKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHH-HHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHH-HHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36899999999999 554433 45567999999999999999999999988764
No 45
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.48 E-value=2.7e-07 Score=44.98 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=25.1
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHH-hcC
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSL-LLG 58 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~-~~~ 58 (119)
+++.+|+.||++++|+|+.+||..++. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999998 565
No 46
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.47 E-value=2.6e-06 Score=58.26 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=71.9
Q ss_pred CCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCc-ccHHHHHHHHHhcCCCCCCHH-HHHHHHHhcCCCCCCc
Q 033455 4 LLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGL-ITFESLKRNSLLLGLNDMMDD-EIVCMLSEGDLDGDGA 81 (119)
Q Consensus 4 ~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~-I~~~el~~~l~~~~~~~~~~~-e~~~l~~~~d~~~dg~ 81 (119)
+.|.++.++|..+....... -..+++..|+.+++|. |++++|.+++..... +-+.. .++-.|+.+|.+++|.
T Consensus 47 ~~g~lt~eef~~i~~~~~Np-----~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~-~~~~~~Kl~faF~vYD~~~~G~ 120 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELALNP-----LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSP-KASKREKLRFAFRVYDLDGDGF 120 (187)
T ss_pred ccCccCHHHHHHHHHHhcCc-----HHHHHHHHHhccCCCCccCHHHHHHHHhhhcC-CccHHHHHHHHHHHhcCCCCCc
Confidence 67899999999888444322 3568899999988888 999999999999877 55554 7888999999999999
Q ss_pred ccHHHHHHHHHhcC
Q 033455 82 LSQFEFCILMVRLS 95 (119)
Q Consensus 82 I~~~eF~~~l~~~~ 95 (119)
|+.+++..++...-
T Consensus 121 I~reel~~iv~~~~ 134 (187)
T KOG0034|consen 121 ISREELKQILRMMV 134 (187)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999987653
No 47
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.43 E-value=5.8e-07 Score=67.27 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=59.3
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 033455 26 FISELCYGFQRLMDGEKGLITFESLKRNSLLLGLND-MMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSP 96 (119)
Q Consensus 26 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~-~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~ 96 (119)
...+++..|+.||.+++|.|+..++.+.+..+.. + ....-...++..+|.|.||+++|+||.+++.....
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~-~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~ 82 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDH-PKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKEL 82 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCC-CCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHH
Confidence 3456788999999999999999999999999988 5 55555778899999999999999999999976433
No 48
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.40 E-value=2.6e-06 Score=53.05 Aligned_cols=64 Identities=23% Similarity=0.216 Sum_probs=54.6
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 25 GFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
........+|...|+ ++|+|+-++...++... +++.+.+.++|..+|.+++|+++++||+-.|.
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 455678899999986 57999999999998875 57888999999999999999999999977664
No 49
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.36 E-value=3.7e-06 Score=63.76 Aligned_cols=67 Identities=24% Similarity=0.279 Sum_probs=57.9
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhc----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSLLL----GLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSP 96 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~----~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~ 96 (119)
.+..+|+.+|.|+.|.|+.+||+.+..-+ .. .++.+++-++-+.+|.|+||.|++.||.....-...
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~-~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNG-AISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCC-CcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 46679999999999999999999887654 34 688999999999999999999999999998865433
No 50
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.36 E-value=1.5e-06 Score=49.23 Aligned_cols=53 Identities=11% Similarity=-0.086 Sum_probs=42.7
Q ss_pred CCCCCCccHHHHHHHHHHhcCC---cchHHHHHHHHhhhcCCCCCcccHHHHHHHH
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGA---EGFISELCYGFQRLMDGEKGLITFESLKRNS 54 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~---~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l 54 (119)
++++|.|+.++|..++...... ....+.+..+|+.+|++++|.|+.+||..++
T Consensus 11 ~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 11 KDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp TTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4689999999999988876542 2233457778999999999999999998764
No 51
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.30 E-value=5.1e-06 Score=62.67 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=50.1
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 22 GAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 22 ~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
+.......+..+|+.+|.+++|.|+.+||.. ++.+|..+|.|+||.|+++||...+...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3444556788999999999999999999831 4678999999999999999999988754
No 52
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.23 E-value=6.7e-06 Score=56.91 Aligned_cols=65 Identities=22% Similarity=0.116 Sum_probs=46.2
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
.+...|+..|+++.|+|+-+||+.+|.....++.+.+.++-|+..+|.+.+|+|.+.||..+++.
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~ 122 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY 122 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Confidence 56667777777777777777777777765554666777777777777777777777777766654
No 53
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.10 E-value=1.5e-05 Score=43.10 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 44 LITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 44 ~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
+++..|++.+|..+.. .+++..+..+|+.+|.+++|++.-+||...+..
T Consensus 1 kmsf~Evk~lLk~~NI-~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI-EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4788999999999999 999999999999999999999999999988764
No 54
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=1.4e-05 Score=58.19 Aligned_cols=94 Identities=22% Similarity=0.170 Sum_probs=68.3
Q ss_pred CCCCCCccHHHHHHHHHHhc-------CCcc------hHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHH
Q 033455 2 ATLLFDHDFEDYFPSMIKRL-------GAEG------FISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIV 68 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~-------~~~~------~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~ 68 (119)
++.+|.|++++++..+.... .... -...-++-|+..|.|++|.++.+||...+.---...+..--+.
T Consensus 124 ~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~ 203 (325)
T KOG4223|consen 124 KNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIA 203 (325)
T ss_pred cCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHH
Confidence 35789999999998777432 1000 0123456799999999999999999987643222134444467
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHhcC
Q 033455 69 CMLSEGDLDGDGALSQFEFCILMVRLS 95 (119)
Q Consensus 69 ~l~~~~d~~~dg~I~~~eF~~~l~~~~ 95 (119)
+.+...|.|+||.|+++||+.=|.+..
T Consensus 204 Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 204 ETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 778899999999999999999887654
No 55
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.05 E-value=6.7e-06 Score=38.10 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=16.2
Q ss_pred HHHHhhhcCCCCCcccHHHHHHH
Q 033455 31 CYGFQRLMDGEKGLITFESLKRN 53 (119)
Q Consensus 31 ~~~F~~~D~~~~G~I~~~el~~~ 53 (119)
+.+|+.+|.|++|.|+.+|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777654
No 56
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.94 E-value=3.5e-05 Score=46.63 Aligned_cols=55 Identities=11% Similarity=-0.087 Sum_probs=45.0
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchH-HHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFI-SELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~-~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
+++|.|+..+|..++..-++..-.. ..+..+++.+|.|++|.|+.+||...+..+
T Consensus 21 ~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 21 GGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred CCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5788999999999998744432222 679999999999999999999998888665
No 57
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.92 E-value=2.4e-05 Score=57.35 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=77.5
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGAL 82 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I 82 (119)
+.+|.+||.+....++.....+....-+..+|+.|+.+.||.++..+|.-+++... ++..-.+-.+|...+...+|+|
T Consensus 271 ~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~v~~lf~~i~q~d~~ki 348 (412)
T KOG4666|consen 271 GTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLRVPVLFPSIEQKDDPKI 348 (412)
T ss_pred CCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc--CcceeeccccchhhhcccCcce
Confidence 46889999999999888877767777788999999999999999999888877643 4655567778999998889999
Q ss_pred cHHHHHHHHHhcCcCcc
Q 033455 83 SQFEFCILMVRLSPGLM 99 (119)
Q Consensus 83 ~~~eF~~~l~~~~~~~~ 99 (119)
+|++|...+.. .|.+.
T Consensus 349 ~~~~f~~fa~~-~p~~a 364 (412)
T KOG4666|consen 349 YASNFRKFAAT-EPNLA 364 (412)
T ss_pred eHHHHHHHHHh-Cchhh
Confidence 99999998754 44443
No 58
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.83 E-value=0.0001 Score=44.49 Aligned_cols=53 Identities=11% Similarity=0.006 Sum_probs=44.7
Q ss_pred CCCccHHHHHHHHHHh--cCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 5 LFDHDFEDYFPSMIKR--LGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 5 ~g~i~~~eF~~~~~~~--~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
+|.|+.++|..++... ++.....+++..+|+.+|.+++|.|+.++|...+..+
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 6799999999999742 4554566789999999999999999999998887654
No 59
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.83 E-value=2.5e-05 Score=36.13 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHH
Q 033455 67 IVCMLSEGDLDGDGALSQFEFCILM 91 (119)
Q Consensus 67 ~~~l~~~~d~~~dg~I~~~eF~~~l 91 (119)
++.+|+.+|.|+||.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 60
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.80 E-value=0.00011 Score=44.61 Aligned_cols=56 Identities=7% Similarity=-0.116 Sum_probs=44.7
Q ss_pred CCCC-CccHHHHHHHHHHhc----CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC
Q 033455 3 TLLF-DHDFEDYFPSMIKRL----GAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLG 58 (119)
Q Consensus 3 ~~~g-~i~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~ 58 (119)
+++| +|+..++..++.... ........+..+++.+|.+++|.|+.+||..++..+.
T Consensus 23 dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 23 EGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred CCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4666 599999999987632 2223456799999999999999999999998887653
No 61
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.80 E-value=0.00011 Score=56.85 Aligned_cols=68 Identities=28% Similarity=0.328 Sum_probs=58.1
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 26 FISELCYGFQRLMDGEKGLITFESLKRNSLLLGL--NDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 26 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~--~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
....+.+.|...| +++|+|+..++..++...+. .....++++.++...+.|.+|+|+|++|+.++...
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3456888999999 99999999999999998765 12357889999999999999999999999977654
No 62
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.77 E-value=0.00012 Score=43.76 Aligned_cols=55 Identities=9% Similarity=-0.152 Sum_probs=44.5
Q ss_pred CCCCCccHHHHHHHHHHhcCCc----chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAE----GFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~----~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
+++|.|+.++|..++...++.. .....+..++..+|.+++|.|+.++|..++...
T Consensus 22 ~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 22 GDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4789999999999887533321 235679999999999999999999999887654
No 63
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.76 E-value=0.00018 Score=38.79 Aligned_cols=51 Identities=10% Similarity=-0.103 Sum_probs=42.1
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHH
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNS 54 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l 54 (119)
+.+|.|++++|..++.... .+...+.+..+|..+|.+++|.|+.++|..++
T Consensus 12 ~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 12 DGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999998887653 34456678889999999999999999998764
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.76 E-value=0.00011 Score=44.25 Aligned_cols=54 Identities=13% Similarity=-0.001 Sum_probs=44.1
Q ss_pred CCCCccHHHHHHHHHHhcCCcch----HHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 4 LLFDHDFEDYFPSMIKRLGAEGF----ISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 4 ~~g~i~~~eF~~~~~~~~~~~~~----~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
.+|.|+.++|..++...++.... ...+..+|+.+|.+++|.|+.++|..++..+
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 36789999999999755443222 5779999999999999999999999887654
No 65
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.74 E-value=0.00016 Score=43.58 Aligned_cols=55 Identities=7% Similarity=-0.126 Sum_probs=45.3
Q ss_pred CCCC-CccHHHHHHHHHH----hcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 3 TLLF-DHDFEDYFPSMIK----RLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 3 ~~~g-~i~~~eF~~~~~~----~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
+++| .|+.+++..+|.. .++.......+..+++.+|++++|.|+.++|..++..+
T Consensus 21 dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 21 EGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred CCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4688 5999999999987 34444556779999999999999999999998877553
No 66
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.74 E-value=1.7e-05 Score=59.94 Aligned_cols=95 Identities=18% Similarity=0.095 Sum_probs=64.9
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC---------CCC-----CHHHHH
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGL---------NDM-----MDDEIV 68 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~---------~~~-----~~~e~~ 68 (119)
..+|-|+|.+|+=++..+... ....+-+|+.||.|++|-|+.+||..+..-+.- +.. -..++.
T Consensus 211 g~~GLIsfSdYiFLlTlLS~p---~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~n 287 (489)
T KOG2643|consen 211 GESGLISFSDYIFLLTLLSIP---ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVN 287 (489)
T ss_pred CCCCeeeHHHHHHHHHHHccC---cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhh
Confidence 457899999999777766543 345778999999999999999999877642210 000 011222
Q ss_pred HH--HHhcCCCCCCcccHHHHHHHHHhcCcCccC
Q 033455 69 CM--LSEGDLDGDGALSQFEFCILMVRLSPGLME 100 (119)
Q Consensus 69 ~l--~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~ 100 (119)
.. ..-+..++++++++++|...+.++-.++++
T Consensus 288 saL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil~ 321 (489)
T KOG2643|consen 288 SALLTYFFGKRGNGKLSIDEFLKFQENLQEEILE 321 (489)
T ss_pred hhHHHHhhccCCCccccHHHHHHHHHHHHHHHHH
Confidence 22 223567788899999998888776555554
No 67
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.71 E-value=1.8e-05 Score=49.99 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=44.1
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 033455 25 GFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCIL 90 (119)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~ 90 (119)
.....+...|..+|.|++|.|+..|+..+...+. + .+-=++.++..||.|+||.||..|...+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~--~-~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM--P-PEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS--T-TGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh--h-hHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3445678889999999999999999887654332 2 2223788999999999999999998764
No 68
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.71 E-value=0.00014 Score=62.07 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=57.5
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCC--CHH-----HHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDM--MDD-----EIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~--~~~-----e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
+..-+|+.||++.+|.++..+|+.+|+.+|. .+ .++ ++++++...|++.+|+|+..+|+.+|.+.
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY-~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGY-DLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCC-CCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 4556899999999999999999999999998 54 333 78999999999999999999999998764
No 69
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.70 E-value=7.4e-05 Score=45.39 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=44.8
Q ss_pred CCCccHHHHHHHHHHhc----CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC
Q 033455 5 LFDHDFEDYFPSMIKRL----GAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGL 59 (119)
Q Consensus 5 ~g~i~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 59 (119)
+|.|+.+++..++.... +.....+.+..+++.+|.+++|.|+.++|..++..++.
T Consensus 24 dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 24 KNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred CCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 59999999999886532 22334567999999999999999999999988877654
No 70
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.67 E-value=7.8e-05 Score=36.05 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 66 EIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 66 e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
+++.+|+.+|.+++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999999997
No 71
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.63 E-value=0.00036 Score=39.05 Aligned_cols=53 Identities=15% Similarity=-0.061 Sum_probs=43.4
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
.+++|.|+.+++..++... +. ..+.+..+|+.+|.+++|.|+.++|..++..+
T Consensus 10 ~~~~G~i~~~el~~~l~~~-g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 10 PDGDGLISGDEARPFLGKS-GL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CCCCCcCcHHHHHHHHHHc-CC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 3578999999999888654 22 45678899999999999999999998877643
No 72
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.62 E-value=0.00029 Score=42.58 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=42.6
Q ss_pred CCccHHHHHHHHHHhcC----CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 6 FDHDFEDYFPSMIKRLG----AEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 6 g~i~~~eF~~~~~~~~~----~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
+.|+.+||..++...++ .......+..+++.+|.|++|.|+.+||..++..+
T Consensus 26 ~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 26 YQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred CeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 38999999999987642 22334678899999999999999999999887665
No 73
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.49 E-value=0.00061 Score=41.10 Aligned_cols=55 Identities=11% Similarity=-0.019 Sum_probs=44.1
Q ss_pred CCCC-CccHHHHHHHHHHhc----CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 3 TLLF-DHDFEDYFPSMIKRL----GAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 3 ~~~g-~i~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
+++| .|+..++..++...+ +.....+.+..+|+.+|.+++|.|+.++|..++..+
T Consensus 22 dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 22 EGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred cCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 5688 499999999986532 222345679999999999999999999998887664
No 74
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.43 E-value=0.00059 Score=43.26 Aligned_cols=48 Identities=10% Similarity=-0.065 Sum_probs=39.7
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHH
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNS 54 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l 54 (119)
++++|.|+.+|...+. + ......+...|..+|.|++|.||.+|+..++
T Consensus 59 ~d~DG~Ls~~EL~~~~---l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 59 GNYDGKLSHHELAPIR---L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred CCCCCcCCHHHHHHHH---c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 5689999999988765 2 1234567789999999999999999999988
No 75
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.43 E-value=0.00077 Score=40.98 Aligned_cols=52 Identities=12% Similarity=-0.083 Sum_probs=43.3
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLL 56 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 56 (119)
.+++|.|+.+++..++... + -..+.+..+|..+|.+++|.|+.++|..++..
T Consensus 21 ~d~~G~Is~~el~~~l~~~-~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 21 KNQDGTVTGAQAKPILLKS-G--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCCCeEeHHHHHHHHHHc-C--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 3578999999999988763 2 23467889999999999999999999887764
No 76
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.21 E-value=0.0024 Score=38.75 Aligned_cols=56 Identities=16% Similarity=-0.050 Sum_probs=44.9
Q ss_pred CCCCCccHHHHHHHHHHhc----CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC
Q 033455 3 TLLFDHDFEDYFPSMIKRL----GAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLG 58 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~ 58 (119)
...++++-.+|..++..-+ +.......+..+|+..|.|+||.|+..||...+..+.
T Consensus 19 G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 19 GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3466899999999986544 3444566799999999999999999999998886653
No 77
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.20 E-value=0.00053 Score=31.10 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=11.8
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHH
Q 033455 68 VCMLSEGDLDGDGALSQFEFCILM 91 (119)
Q Consensus 68 ~~l~~~~d~~~dg~I~~~eF~~~l 91 (119)
+.+|+.++.+++|.|++.+|..++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 344444454444555555554444
No 78
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.19 E-value=0.00041 Score=49.32 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhc-CCCCC--CHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 27 ISELCYGFQRLMDGEKGLITFESLKRNSLLL-GLNDM--MDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 27 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~~--~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
.+.+..+|..-|.+.+|+|+..++++++..- .. .+ +-++-+-.|...|+|+||.|+|+||..-+..
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaE-HfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAE-HFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHH-HHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 3568889999999999999999999887652 21 11 1123344688899999999999999765543
No 79
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.17 E-value=0.0012 Score=39.05 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=52.9
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHh
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSLLLGLN-DMMDDEIVCMLSEGDLD----GDGALSQFEFCILMVR 93 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~e~~~l~~~~d~~----~dg~I~~~eF~~~l~~ 93 (119)
++..+|..+-. +.+.|+.++|...|..-... ..+.+++..++..+..+ ..+.+++++|..+|.+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36788999966 89999999999999876541 46889999999988654 4689999999999965
No 80
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.15 E-value=0.00069 Score=30.69 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=24.1
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHh
Q 033455 30 LCYGFQRLMDGEKGLITFESLKRNSLL 56 (119)
Q Consensus 30 ~~~~F~~~D~~~~G~I~~~el~~~l~~ 56 (119)
+..+|+.+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988764
No 81
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0036 Score=39.60 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhc------CC--CC-CCHHHHHHHH----HhcCCCCCCcccHHHHHHH
Q 033455 31 CYGFQRLMDGEKGLITFESLKRNSLLL------GL--ND-MMDDEIVCML----SEGDLDGDGALSQFEFCIL 90 (119)
Q Consensus 31 ~~~F~~~D~~~~G~I~~~el~~~l~~~------~~--~~-~~~~e~~~l~----~~~d~~~dg~I~~~eF~~~ 90 (119)
.-.|...|-+++|+++--|+..++... |. .+ .++.|++.++ +.-|.|+||.|+|.||.+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 356888999999999999988887643 21 12 4667777665 4557889999999999864
No 82
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.96 E-value=0.0018 Score=50.12 Aligned_cols=53 Identities=17% Similarity=-0.008 Sum_probs=41.4
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLG 58 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~ 58 (119)
..+|-|+|+||... ...++.+ ......+|+.||+.++|.++.+++.+++....
T Consensus 86 tKDglisf~eF~af-e~~lC~p--Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 86 TKDGLISFQEFRAF-ESVLCAP--DALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred cccccccHHHHHHH-HhhccCc--hHHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 45789999999854 4444443 33567899999999999999999999988653
No 83
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.81 E-value=0.0054 Score=47.03 Aligned_cols=85 Identities=13% Similarity=0.172 Sum_probs=60.9
Q ss_pred CCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHh-------cCCCCCC-HHHHHHHHHhcC
Q 033455 4 LLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLL-------LGLNDMM-DDEIVCMLSEGD 75 (119)
Q Consensus 4 ~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~-------~~~~~~~-~~e~~~l~~~~d 75 (119)
.+|+++|.+|+-.+...-. ......+...|+.+|.+++|.++..|++..... .+...++ ++-+.+++....
T Consensus 328 ~eGrmdykdFv~FilA~e~-k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvk 406 (493)
T KOG2562|consen 328 VEGRMDYKDFVDFILAEED-KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVK 406 (493)
T ss_pred ecCcccHHHHHHHHHHhcc-CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhC
Confidence 5788999999976654432 233456889999999999999999998766553 2221333 333556677767
Q ss_pred CCCCCcccHHHHHH
Q 033455 76 LDGDGALSQFEFCI 89 (119)
Q Consensus 76 ~~~dg~I~~~eF~~ 89 (119)
+...++|+..+|..
T Consensus 407 P~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 407 PEDENKITLQDLKG 420 (493)
T ss_pred ccCCCceeHHHHhh
Confidence 67788999999876
No 84
>PF14658 EF-hand_9: EF-hand domain
Probab=96.78 E-value=0.011 Score=33.78 Aligned_cols=56 Identities=14% Similarity=-0.003 Sum_probs=45.5
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCC-CcccHHHHHHHHHhc
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEK-GLITFESLKRNSLLL 57 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~-G~I~~~el~~~l~~~ 57 (119)
+...|.|........+...-.......++..+...+|+++. |.|+.+.|..+++.+
T Consensus 9 ~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 9 TQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred CcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 35678888888887777665534566789999999999998 999999999988753
No 85
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.018 Score=44.08 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=59.7
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHH--HHHHHHHhcCCCCC
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDD--EIVCMLSEGDLDGD 79 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~--e~~~l~~~~d~~~d 79 (119)
..+++++++++|+..+..+. .+-++--|..+|+...|.|+..+|..++......+.... .++++-+.+..+ +
T Consensus 297 ~rg~~kLs~deF~~F~e~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~ 370 (489)
T KOG2643|consen 297 KRGNGKLSIDEFLKFQENLQ-----EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-G 370 (489)
T ss_pred cCCCccccHHHHHHHHHHHH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-C
Confidence 35688999999999887653 223455699999999999999999998877653122221 245566666655 4
Q ss_pred CcccHHHHHHHH
Q 033455 80 GALSQFEFCILM 91 (119)
Q Consensus 80 g~I~~~eF~~~l 91 (119)
-.||++||.+..
T Consensus 371 ~gISl~Ef~~Ff 382 (489)
T KOG2643|consen 371 KGISLQEFKAFF 382 (489)
T ss_pred CCcCHHHHHHHH
Confidence 469999886654
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.49 E-value=0.0062 Score=46.23 Aligned_cols=42 Identities=17% Similarity=-0.090 Sum_probs=35.9
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
.+++|.|+.+||+. ...+|..+|.|++|.|+.+||..++...
T Consensus 345 ~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 345 LDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred CCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 46789999999952 4578999999999999999999988653
No 87
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.012 Score=45.73 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=56.3
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 25 GFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
+.++.....|+..-.|-.|+|+-.--+..+... +++-.|+..||..+|.+.||.++..|||..+.-
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS---klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS---KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhc---cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 445567788999999999999988777777664 678889999999999999999999999998754
No 88
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.12 E-value=0.011 Score=51.09 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=53.3
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 32 YGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 32 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
..|+.||++++|.|+..+|+.++..-. ..++.|++-++.....|.+..++|++|+..+...
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k--~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK--HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc--cchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 468899999999999999999987644 5899999999998888899999999999887553
No 89
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.91 E-value=0.048 Score=29.47 Aligned_cols=49 Identities=14% Similarity=-0.050 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 8 HDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 8 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
++|.|-..++... .=.-....+..+|+..|+.++|.+..+|+......+
T Consensus 2 msf~Evk~lLk~~-NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMM-NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHT-T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 5677765555432 112234567789999999999999999998877653
No 90
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.85 E-value=0.017 Score=46.08 Aligned_cols=77 Identities=21% Similarity=0.184 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHH
Q 033455 8 HDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFE 86 (119)
Q Consensus 8 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~e 86 (119)
|++..|..++....+......-+.++|+.+|++++|.++..++...+..+.. +-.-+.+.-+++.++++++ ..+-++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-cccccc
Confidence 6778888777766655433345778999999999999999999999988766 5445567778888888776 554443
No 91
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.019 Score=46.83 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 27 ISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 27 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
..+.+..|..+|+...|+++-..-+.+|... ++++..+..+|..-|.|+||+++.+||+-.|.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS---~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQS---GLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhc---CCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 3467889999999999999999888888664 57888899999999999999999999976553
No 92
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.80 E-value=0.083 Score=35.03 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=50.3
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSLLLGL--NDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~--~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
.+...|..|-..+...|+...|..+|..++. .+++..++.-+|..+-..+..+|+|++|...|...
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3445555566778889999999999999755 26788899999999776666789999999988654
No 93
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.48 E-value=0.015 Score=43.11 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=66.3
Q ss_pred CCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc-CCCCCCHHHHHHHHHhcCCCCCCccc
Q 033455 5 LFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL-GLNDMMDDEIVCMLSEGDLDGDGALS 83 (119)
Q Consensus 5 ~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~~~~~e~~~l~~~~d~~~dg~I~ 83 (119)
++.|...+|..-+..+.. ..++..|.+||.+++|.++..+....+.-+ +. ..+.+-++-.|+.++.+.||.+.
T Consensus 241 g~~igi~efa~~l~vpvs-----d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p-~~t~~iiq~afk~f~v~eDg~~g 314 (412)
T KOG4666|consen 241 GPDIGIVEFAVNLRVPVS-----DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGP-PVTPVIIQYAFKRFSVAEDGISG 314 (412)
T ss_pred CCCcceeEeeeeeecchh-----hhhhhhhheecCCCCCcccHHHHhhhheeeeCC-CCcHHHHHHHHHhcccccccccc
Confidence 455666666554443322 468889999999999999998877777665 54 77888899999999999999999
Q ss_pred HHHHHHHHHhcCcCccC
Q 033455 84 QFEFCILMVRLSPGLME 100 (119)
Q Consensus 84 ~~eF~~~l~~~~~~~~~ 100 (119)
-.+|.-++.. .-++-+
T Consensus 315 e~~ls~ilq~-~lgv~~ 330 (412)
T KOG4666|consen 315 EHILSLILQV-VLGVEV 330 (412)
T ss_pred hHHHHHHHHH-hcCcce
Confidence 9888777653 334433
No 94
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.45 E-value=0.028 Score=37.16 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=49.3
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHH--HHHHHHhcCCCCCCcccHHHHHHHHHhcCcC
Q 033455 33 GFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDE--IVCMLSEGDLDGDGALSQFEFCILMVRLSPG 97 (119)
Q Consensus 33 ~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e--~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~ 97 (119)
+-..|-.+|.|.++.++|..+++.+++ ....+ +.-.|+.+|.|+|+.|--.++...+.++..+
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE--~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~ 140 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSE--MAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD 140 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHh--hChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc
Confidence 334455799999999999999988876 33333 4456889999999999999999998876554
No 95
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.41 E-value=0.04 Score=42.43 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=44.6
Q ss_pred HhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc----CCCCCCcccHHHHHHHHHhc
Q 033455 34 FQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEG----DLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 34 F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~----d~~~dg~I~~~eF~~~l~~~ 94 (119)
|--+|++.+|.|++++|...... .++.--++++|... ....+|+++|.+|+..+...
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~----tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDH----TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred HhhhccccccccCHHHHHHHhcc----chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 66789999999999998865422 45666789999833 34578999999999988764
No 96
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.39 E-value=0.034 Score=41.46 Aligned_cols=67 Identities=22% Similarity=0.274 Sum_probs=54.6
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 033455 25 GFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSP 96 (119)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~ 96 (119)
.....+...|..+|.+.+|.++..|+..+- . .-.+.=++.+|..+|...||.||-.|.+.++.+..+
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~----l-dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIE----L-DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhh----c-cCchhHHHHHHhhhcccccCccccchhhhhhccCCC
Confidence 345578899999999999999999987652 2 233445889999999999999999999999876543
No 97
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.07 E-value=0.23 Score=38.92 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=64.7
Q ss_pred CccHHHHHHHHHHhcCCcchHHHHHHHHh-hhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHH
Q 033455 7 DHDFEDYFPSMIKRLGAEGFISELCYGFQ-RLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQF 85 (119)
Q Consensus 7 ~i~~~eF~~~~~~~~~~~~~~~~~~~~F~-~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~ 85 (119)
.++-++|+...-..+.++....++.++.. +-|..+||.|+.+||...=..+.. ++.-.+..|..+|..++|.++|+
T Consensus 52 ~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~---pDal~~~aFqlFDr~~~~~vs~~ 128 (694)
T KOG0751|consen 52 YMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA---PDALFEVAFQLFDRLGNGEVSFE 128 (694)
T ss_pred ccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC---chHHHHHHHHHhcccCCCceehH
Confidence 46778888777767666555555655554 446778888888888765433332 34445667888888888889999
Q ss_pred HHHHHHHhcCcCccCCccccccc
Q 033455 86 EFCILMVRLSPGLMEGSPQSMEG 108 (119)
Q Consensus 86 eF~~~l~~~~~~~~~~~~~~~~~ 108 (119)
++..++..+.. ..+.+..|-.+
T Consensus 129 ~~~~if~~t~l-~~~~~f~~d~e 150 (694)
T KOG0751|consen 129 DVADIFGQTNL-HHHIPFNWDSE 150 (694)
T ss_pred HHHHHHhcccc-ccCCCccCCcc
Confidence 99888865422 23344455443
No 98
>PLN02952 phosphoinositide phospholipase C
Probab=94.96 E-value=0.41 Score=38.43 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=61.8
Q ss_pred CCCCCccHHHHHHHHHHhc-CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC-CCCCHHHHHHHHHhc----C-
Q 033455 3 TLLFDHDFEDYFPSMIKRL-GAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGL-NDMMDDEIVCMLSEG----D- 75 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~-~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~-~~~~~~e~~~l~~~~----d- 75 (119)
...|.++|.+|.......- .......++..+|..+-.++ +.|+.++|...|..... ...+.+++..++..+ .
T Consensus 12 ~~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 12 NDSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred ccCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccc
Confidence 3467899999975544332 22235678999999996544 68999999999998754 135666677665533 1
Q ss_pred --CCCCCcccHHHHHHHHHh
Q 033455 76 --LDGDGALSQFEFCILMVR 93 (119)
Q Consensus 76 --~~~dg~I~~~eF~~~l~~ 93 (119)
..+.+.++++.|..+|..
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccCcCHHHHHHHHcC
Confidence 123356999999999863
No 99
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.89 E-value=0.011 Score=43.68 Aligned_cols=63 Identities=17% Similarity=0.046 Sum_probs=50.5
Q ss_pred HHHHHHHhhhcCCCCCcccHHH---HHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 28 SELCYGFQRLMDGEKGLITFES---LKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 28 ~~~~~~F~~~D~~~~G~I~~~e---l~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
..+..-|..+|+|+++.|...| |+.++.... ....=.+++++.+|.|+|-.|++.|...++.-
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s---~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS---KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhc---cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3566789999999999999988 566665543 23334678999999999999999999999864
No 100
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=94.81 E-value=0.17 Score=35.22 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=47.1
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHH
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDE 66 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e 66 (119)
++.+|.|++.+.. .|.-+++.+..--.++...+.-|.|.+|+|+..++.-++.......+..+.
T Consensus 110 e~rDgfIdl~ELK-~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds 173 (244)
T KOG0041|consen 110 EDRDGFIDLMELK-RMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDS 173 (244)
T ss_pred ccccccccHHHHH-HHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccch
Confidence 5679999999955 555666665555678899999999999999999987666653221455544
No 101
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.69 E-value=0.045 Score=43.34 Aligned_cols=75 Identities=21% Similarity=0.164 Sum_probs=64.9
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCcc
Q 033455 28 SELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGSP 103 (119)
Q Consensus 28 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~~ 103 (119)
...+.-|..+|.++.|+++.+++..++...+- +.+++.+.+++...+.+.+|.+...||..++.....+..+..+
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~-~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~~~R 667 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENV-GWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTEGSR 667 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChHHHH
Confidence 34556799999999999999999999999886 8999999999999999989999999999999877666666544
No 102
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=94.55 E-value=0.13 Score=39.72 Aligned_cols=56 Identities=9% Similarity=-0.048 Sum_probs=43.0
Q ss_pred CCCCCCccHHHHHHHHHHhcC---CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 2 ATLLFDHDFEDYFPSMIKRLG---AEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~---~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
++.+|.|+++||......... -.-....+.+.=+..|-|+||+|+.+||..++.-.
T Consensus 558 ~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 558 ADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred cCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 677899999999987654432 22233457777888999999999999999988654
No 103
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.12 E-value=0.27 Score=30.48 Aligned_cols=51 Identities=12% Similarity=-0.104 Sum_probs=38.5
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLL 56 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 56 (119)
..+|.|+-++-...+... .=....+..++.+.|.+++|+++.+||..++.-
T Consensus 21 ~~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 21 PQDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp SSTTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 457888888877665543 223467899999999999999999999887643
No 104
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.84 E-value=0.12 Score=38.24 Aligned_cols=61 Identities=13% Similarity=0.021 Sum_probs=46.5
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHh-----cCCCCCCHHHHHH-----------HHHhcCCCCCCcccHHHHHHHHHh
Q 033455 32 YGFQRLMDGEKGLITFESLKRNSLL-----LGLNDMMDDEIVC-----------MLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 32 ~~F~~~D~~~~G~I~~~el~~~l~~-----~~~~~~~~~e~~~-----------l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
..|.+.|.|++|+++-.+|.+++.. ... +..++++.+ +++..|.|.|.-|+.+||.+---+
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdp-kNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDP-KNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 3578889999999999998887764 233 455555533 477889999999999999987543
No 105
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.31 E-value=0.31 Score=40.60 Aligned_cols=66 Identities=20% Similarity=0.106 Sum_probs=54.0
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCH-----HHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 28 SELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMD-----DEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 28 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~-----~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
.+++..|..+++...|.++++++..++..+|. +..+ +++..+....|.+..|++++.+|...|.+.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~-~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGY-NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc-ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 46888999999999999999999999999998 6654 234445556666677999999999988764
No 106
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.15 E-value=0.81 Score=31.01 Aligned_cols=48 Identities=13% Similarity=0.010 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCcccccccChh
Q 033455 62 MMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGSPQSMEGSPE 111 (119)
Q Consensus 62 ~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~ 111 (119)
...+..+++|..++..+.+.+++.|...++... ...-++.-|....+|
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n--r~~~D~~GW~a~~~E 140 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN--RNANDPFGWFAAFFE 140 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc--cccCCcchhhhhhhH
Confidence 445667888999988878899999999998763 234455667665554
No 107
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.99 E-value=0.24 Score=40.40 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=57.5
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
-+..+|+.+|++.+|.++..+...++..+.. .+.+..+..+|+.++...++++...+|.......
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 3667899999999999999999999999988 8999999999999987788999999998877653
No 108
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=92.43 E-value=0.4 Score=34.47 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=60.1
Q ss_pred CCCCCccHHHHHHHHHHhcCC-------cchHHHHHHHHh-hhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGA-------EGFISELCYGFQ-RLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEG 74 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~-------~~~~~~~~~~F~-~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~ 74 (119)
+++..++..+|+.+..-...+ ....++..+-|. .+|.+.+|.++.++|...+.-..+ .+.-.++..++...
T Consensus 248 dgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~-~~alne~~~~ma~~ 326 (362)
T KOG4251|consen 248 DGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNF-RLALNEVNDIMALT 326 (362)
T ss_pred CCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhh-hhhHHHHHHHHhhh
Confidence 345567777877543321111 011123334454 789999999999999998766666 66667788888888
Q ss_pred CCCCCCcccHHHHHH
Q 033455 75 DLDGDGALSQFEFCI 89 (119)
Q Consensus 75 d~~~dg~I~~~eF~~ 89 (119)
+.+++.+++.+++..
T Consensus 327 d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 327 DANNDEKLSLEELLE 341 (362)
T ss_pred ccCCCcccCHHHHHH
Confidence 999999999999865
No 109
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.26 E-value=0.81 Score=40.57 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=61.6
Q ss_pred CCCCCccHHHHHHHHHHhc------CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc-CCCCCCHHHHHHHHHhcC
Q 033455 3 TLLFDHDFEDYFPSMIKRL------GAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL-GLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~------~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~~~~~e~~~l~~~~d 75 (119)
..+|.++..+|-.++...- .+..+...+.+...+.|++.+|+|+..++-..+-.- ..+-.+..+++..|+.++
T Consensus 2265 ek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~ 2344 (2399)
T KOG0040|consen 2265 EKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALD 2344 (2399)
T ss_pred hhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhh
Confidence 4689999999998877431 122233478889999999999999999987776543 222356678999999998
Q ss_pred CCCCCcccHHHH
Q 033455 76 LDGDGALSQFEF 87 (119)
Q Consensus 76 ~~~dg~I~~~eF 87 (119)
. +..+|+-++.
T Consensus 2345 a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2345 A-GKPYVTKEEL 2355 (2399)
T ss_pred c-CCccccHHHH
Confidence 7 5566666654
No 110
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=92.01 E-value=0.17 Score=32.04 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 61 DMMDDEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 61 ~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
-+++++++.++..+..|..|+|.|.+|..-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 37899999999999999999999999998775
No 111
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=90.78 E-value=2.4 Score=25.63 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHh-------cCCC---CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 27 ISELCYGFQRLMDGEKGLITFESLKRNSLL-------LGLN---DMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 27 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~-------~~~~---~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
.++++.+|+.+ .|++|.++...|...|.. +|+. +..+..++.-|.... .+..|+-+.|+..|..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 35788999988 788899998887777664 3331 335666777777653 4567999999999975
No 112
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.71 E-value=0.34 Score=27.87 Aligned_cols=55 Identities=22% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-------CCCcccHHHHHHH
Q 033455 27 ISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLD-------GDGALSQFEFCIL 90 (119)
Q Consensus 27 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~-------~dg~I~~~eF~~~ 90 (119)
.+.+..+|+.+ .+++++||.++|++.| .. . +++-++..+... ..|..+|..|++.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l---~p---e--~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL---TP---E--QAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS----C---C--CHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc---Cc---H--HHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 46789999999 8899999999999875 11 1 223444433322 2367888888753
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.64 E-value=2.2 Score=35.48 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=45.7
Q ss_pred HHhhhc--CCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 33 GFQRLM--DGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 33 ~F~~~D--~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
-+..|+ +.+.|+|+-.+-+.++...+ ++..-+-++|...|.|+||+++..||.-.|+
T Consensus 18 ~~~qF~~Lkp~~gfitg~qArnfflqS~---LP~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 18 HDAQFGQLKPGQGFITGDQARNFFLQSG---LPTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHHHHhccCCCCCccchHhhhhhHHhcC---CChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 344444 56789999999999887765 5566688999999999999999999976654
No 114
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.51 E-value=0.21 Score=41.62 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=56.9
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 25 GFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
........+|...|++.+|.|+..+....+.. . +++...+..+|..++..+.|.+++.+|+-.+..+
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~-gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--F-GLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHHHHhccccCCCccccccccccccc--C-CCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 44556778999999999999999998888877 3 6788889999999999999999999997766543
No 115
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=88.43 E-value=1.2 Score=25.91 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=42.4
Q ss_pred CCCCCccHHHHHHHHHHhcCCc-chHHHHHHHHhhhcCC----CCCcccHHHHHHHHHhc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAE-GFISELCYGFQRLMDG----EKGLITFESLKRNSLLL 57 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~-~~~~~~~~~F~~~D~~----~~G~I~~~el~~~l~~~ 57 (119)
.+.+.++.++|..-+....+.. .....+..++..|.++ ..+.++.+.|...|..-
T Consensus 11 ~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 11 SDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp TTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 3567899999999998777653 3467788888888654 47999999999988653
No 116
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=87.80 E-value=5.9 Score=33.59 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC---------CCCCHHHHHHHHHhcCCC-
Q 033455 8 HDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGL---------NDMMDDEIVCMLSEGDLD- 77 (119)
Q Consensus 8 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~---------~~~~~~e~~~l~~~~d~~- 77 (119)
.+++.|..++... +. ..++..+|..+--+++-++|.++|..+++.-.. .......++.++..+..+
T Consensus 205 f~~e~f~~~l~kl-cp---R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKL-CP---RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred ccHHHHHHHHHhc-CC---chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 4556665554433 32 346889999999999999999999999985321 257778899999998876
Q ss_pred ---CCCcccHHHHHHHHHh
Q 033455 78 ---GDGALSQFEFCILMVR 93 (119)
Q Consensus 78 ---~dg~I~~~eF~~~l~~ 93 (119)
.+|+++-+-|+.+++.
T Consensus 281 ~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhccccchhhhHHHhhC
Confidence 4689999999999876
No 117
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=85.28 E-value=2 Score=25.37 Aligned_cols=55 Identities=20% Similarity=0.099 Sum_probs=43.0
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccC
Q 033455 40 GEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLME 100 (119)
Q Consensus 40 ~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~ 100 (119)
-++|.|+.++...+.. . +.+.+.+++++..... .|...|.-|+.++....|.+.+
T Consensus 25 ~~~~Vit~e~~~~I~a---~-~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p~L~~ 79 (82)
T cd08330 25 HGKKVITQEQYSEVRA---E-KTNQEKMRKLFSFVRS--WGASCKDIFYQILREEEPYLVE 79 (82)
T ss_pred HHCCCCCHHHHHHHHc---C-CCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhChHHHh
Confidence 4568999888777653 4 6778889999987664 5789999999999888776654
No 118
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=85.02 E-value=1.1 Score=27.88 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=49.0
Q ss_pred hhhcCCCCCcccHHHHHHHHHh----------cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCccc
Q 033455 35 QRLMDGEKGLITFESLKRNSLL----------LGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGSPQ 104 (119)
Q Consensus 35 ~~~D~~~~G~I~~~el~~~l~~----------~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~~~ 104 (119)
++||....-+|+.++++..+.. .|. .++..-+-+++-+...++..-++-+=+..++......+-.-.++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTge-DiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~~q~~~~~ 88 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGD-DLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGSMQSFVPQ 88 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCc-hhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChhHHHHHHH
Confidence 3688889999999999888874 244 45555556666666556666777776666665544434334455
Q ss_pred ccccChh
Q 033455 105 SMEGSPE 111 (119)
Q Consensus 105 ~~~~~~~ 111 (119)
+|+++++
T Consensus 89 yLe~s~~ 95 (107)
T TIGR01848 89 YLEASLE 95 (107)
T ss_pred HHHHHHH
Confidence 6666655
No 119
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.01 E-value=6.8 Score=31.69 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=49.7
Q ss_pred cchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCC--CCCHHHHHHHHHhcC-------CCCCCcccHHHHHHHHHh
Q 033455 24 EGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLN--DMMDDEIVCMLSEGD-------LDGDGALSQFEFCILMVR 93 (119)
Q Consensus 24 ~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~--~~~~~e~~~l~~~~d-------~~~dg~I~~~eF~~~l~~ 93 (119)
.++..++..+|..|-.++ +.++.++|...|..-... ..+.++++.++..+- .-..+.++.+.|..+|.+
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 345578999999996555 899999999999987630 135566677765432 123456999999998865
No 120
>PLN02222 phosphoinositide phospholipase C 2
Probab=82.26 E-value=7.1 Score=31.49 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCC-CCCHHHHHHHHHhcCC-CCCCcccHHHHHHHHHh
Q 033455 26 FISELCYGFQRLMDGEKGLITFESLKRNSLLLGLN-DMMDDEIVCMLSEGDL-DGDGALSQFEFCILMVR 93 (119)
Q Consensus 26 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~e~~~l~~~~d~-~~dg~I~~~eF~~~l~~ 93 (119)
+..++..+|..+-. ++.++.++|...|...... ..+.+.++.++..+.. ...+.++++.|..+|.+
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44589999998864 4799999999999887541 3467778888887532 24567999999999965
No 121
>PLN02228 Phosphoinositide phospholipase C
Probab=81.81 E-value=9.4 Score=30.73 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=50.9
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHh
Q 033455 25 GFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLN-DMMDDEIVCMLSEGDLD----GDGALSQFEFCILMVR 93 (119)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~e~~~l~~~~d~~----~dg~I~~~eF~~~l~~ 93 (119)
.+..++..+|..+-.+ +.++.++|...|...... ..+.+.+..++..+... ..|.++.+.|..+|.+
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 4567899999988643 589999999999887541 24556688888877643 3467999999999964
No 122
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.40 E-value=1.4 Score=33.44 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=43.4
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHH-HHHHHHhcCCCCCCcccHHHH
Q 033455 25 GFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDE-IVCMLSEGDLDGDGALSQFEF 87 (119)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e-~~~l~~~~d~~~dg~I~~~eF 87 (119)
.+.+.++++|+.+|+.+.|+|+..-++.++..+.. .+++.+ +.-+=+..++.+-|-|-..+|
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~-~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNR-LVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcc-cccCHHHHHHhcCccChhhcceEEeccc
Confidence 44568999999999999999999999999998875 555543 433333444444454444443
No 123
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.01 E-value=7.4 Score=31.73 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=57.2
Q ss_pred CCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC---C----CCCHHHHHHHHHhcCCC
Q 033455 5 LFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGL---N----DMMDDEIVCMLSEGDLD 77 (119)
Q Consensus 5 ~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~---~----~~~~~e~~~l~~~~d~~ 77 (119)
.+ |++++|. ....+...+++-.|...|. ++|.++.+++..++...-. . +...+....++...+.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 8999988 4445666789999999999 9999999998887765311 0 22333345567777777
Q ss_pred CCCcccHHHHHHHHHh
Q 033455 78 GDGALSQFEFCILMVR 93 (119)
Q Consensus 78 ~dg~I~~~eF~~~l~~ 93 (119)
..|.+.+.++..++..
T Consensus 74 ~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQ 89 (646)
T ss_pred ccceeeecchhHHHHh
Confidence 7788887777666653
No 124
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=76.79 E-value=0.69 Score=29.03 Aligned_cols=47 Identities=11% Similarity=-0.149 Sum_probs=28.4
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHH
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKR 52 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~ 52 (119)
+.+|.++-.|...+..... ..+..++.-|+..|.|++|.|+..|...
T Consensus 66 n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 66 NKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4567777777654433222 2223467778899999999999988653
No 125
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=76.29 E-value=16 Score=22.89 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=44.4
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 033455 30 LCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCIL 90 (119)
Q Consensus 30 ~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~ 90 (119)
+..+|-+++..++...+..+++.+|...|. ....+.++.++..+. |+ +.+|.+.-
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~-E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGA-EIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCc-ccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 345677888888888999999999999999 999999999998876 43 55666553
No 126
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=75.88 E-value=4.5 Score=32.56 Aligned_cols=60 Identities=15% Similarity=-0.034 Sum_probs=41.4
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCC-CH-HHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 28 SELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDM-MD-DEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 28 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~-~~-~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
+-+..+|..||.++||.+++.|++.++...+. .. .. -+.+. .-.+..|.++|.-|...+.
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~-~pW~~~~~~~~----t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPG-SPWTSSPYKDS----TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC-CCCCCCccccc----ceecccceeehhhHHHHHH
Confidence 45778899999999999999999999998754 22 00 00110 1112568888888877654
No 127
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=75.10 E-value=26 Score=29.11 Aligned_cols=85 Identities=11% Similarity=-0.014 Sum_probs=56.1
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGAL 82 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I 82 (119)
+.+|.+++.+-..++...-..- ....++..|+..+...++++...++.......+. +. ++..+|..+..+ .+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~n~~l-~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~-rp---ev~~~f~~~s~~-~~~l 221 (746)
T KOG0169|consen 148 NKNGHMSFDEVLDLLKQLNVQL-SESKARRLFKESDNSQTGKLEEEEFVKFRKELTK-RP---EVYFLFVQYSHG-KEYL 221 (746)
T ss_pred ccccccchhhHHHHHHHHHHhh-hHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc-Cc---hHHHHHHHHhCC-CCcc
Confidence 4577788888776665543321 2235677788888888999999888887776654 33 566666665544 5566
Q ss_pred cHHHHHHHHHh
Q 033455 83 SQFEFCILMVR 93 (119)
Q Consensus 83 ~~~eF~~~l~~ 93 (119)
+..+++..+..
T Consensus 222 s~~~L~~Fl~~ 232 (746)
T KOG0169|consen 222 STDDLLRFLEE 232 (746)
T ss_pred CHHHHHHHHHH
Confidence 66666665543
No 128
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=75.04 E-value=2.8 Score=24.13 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 61 DMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 61 ~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
.++...+..+...|+.-..++|+-++|+..++.
T Consensus 21 ~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 21 HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 455555555555554444556666666665543
No 129
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=74.82 E-value=4.6 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 62 MMDDEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 62 ~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
++..+...++..+........++.+|...+.
T Consensus 34 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 34 LDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4455555555544444344455555555543
No 130
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=74.51 E-value=5 Score=23.30 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=32.7
Q ss_pred CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCcccccccChhhhhhhc
Q 033455 63 MDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGSPQSMEGSPESMVEDL 117 (119)
Q Consensus 63 ~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (119)
.++|++-+++.+. ||+.+|+-+ ++.+-++.+.-..|+.+.++..|++|
T Consensus 15 ~~~eIe~LL~~Ak------iSl~DyImi-KRGS~DmPe~l~~~~~~QideeV~~L 62 (79)
T PF10398_consen 15 AQEEIEILLKIAK------ISLVDYIMI-KRGSQDMPEHLNMAFLAQIDEEVEKL 62 (79)
T ss_dssp HHHHHHHHHHHHT--------HHHHHHH-HTTSS---TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh------ccHHHHHHh-cccCCcCcccccHHHHHHHHHHHHHH
Confidence 4567777777655 899998755 66788899988899999999888765
No 131
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=69.30 E-value=32 Score=23.43 Aligned_cols=62 Identities=18% Similarity=-0.009 Sum_probs=41.7
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhc-------CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033455 28 SELCYGFQRLMDGEKGLITFESLKRNSLLL-------GLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILM 91 (119)
Q Consensus 28 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-------~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l 91 (119)
++..++|..+++.+.+.+|..|+..++..= |. --+.-|..-++. +-.+.+|.++-++-..++
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW-~a~~~EW~~~y~-L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGW-FAAFFEWGALYI-LAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchh-hhhhhHHHHHHH-HHcCcCCcEeHHHHhhhc
Confidence 478899999999999999999998887751 22 122233333333 234668888888766554
No 132
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=67.91 E-value=29 Score=24.13 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=49.9
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHH-HHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFES-LKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGA 81 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e-l~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~ 81 (119)
+-+|+|+++++...+...+..++ +. .+++.--++.|+..+ |..++..++. ++ ++-++-+.+....+
T Consensus 9 DFDGTITl~Ds~~~itdtf~~~e----~k---~l~~~vls~tiS~rd~~g~mf~~i~~-s~-~Eile~llk~i~Id---- 75 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGPGE----WK---ALKDGVLSKTISFRDGFGRMFGSIHS-SL-EEILEFLLKDIKID---- 75 (220)
T ss_pred cCCCceEecchhHHHHhccCchH----HH---HHHHHHhhCceeHHHHHHHHHHhcCC-CH-HHHHHHHHhhcccC----
Confidence 45899999999998888776532 22 334444567888554 6777766655 44 22344444444443
Q ss_pred ccHHHHHHHHHhc
Q 033455 82 LSQFEFCILMVRL 94 (119)
Q Consensus 82 I~~~eF~~~l~~~ 94 (119)
-.|.+|.......
T Consensus 76 p~fKef~e~ike~ 88 (220)
T COG4359 76 PGFKEFVEWIKEH 88 (220)
T ss_pred ccHHHHHHHHHHc
Confidence 4578888887653
No 133
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=64.99 E-value=8.8 Score=29.10 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=48.7
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 28 SELCYGFQRLMDGEKGLITFESLKRNSLLLGL--NDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 28 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~--~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
.+++..|+.+-.++++......+..+-..+.. .+.=.+++-+||..+|.|.|+.++..|+..+-...
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk 279 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK 279 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC
Confidence 36788899887777776666665554222211 14556889999999999999999999998876554
No 134
>PLN02952 phosphoinositide phospholipase C
Probab=64.38 E-value=27 Score=28.45 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=40.2
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 41 EKGLITFESLKRNSLLLGLN-DMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~-~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
+.|.++.+++....+.+... ..+..++..+|..+..++ +.++.++|...|..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHH
Confidence 45899999998877766420 236788999999987544 68999999998875
No 135
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=64.22 E-value=11 Score=16.34 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=6.9
Q ss_pred cCCCCCcccHHHHH
Q 033455 38 MDGEKGLITFESLK 51 (119)
Q Consensus 38 D~~~~G~I~~~el~ 51 (119)
|.|++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34555666555543
No 136
>PLN02223 phosphoinositide phospholipase C
Probab=63.63 E-value=39 Score=27.16 Aligned_cols=68 Identities=9% Similarity=-0.207 Sum_probs=48.1
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHH---Hhc-CCCCCCHHHHHHHHHhcCCC--------CCCcccHHHHHHHHH
Q 033455 25 GFISELCYGFQRLMDGEKGLITFESLKRNS---LLL-GLNDMMDDEIVCMLSEGDLD--------GDGALSQFEFCILMV 92 (119)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l---~~~-~~~~~~~~e~~~l~~~~d~~--------~dg~I~~~eF~~~l~ 92 (119)
++.+.++.+|..+- .+.|.++.+.+...+ ... |+...+.++.+.++..+-.. ..+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 34567899999884 777999999999888 443 22245666777776644321 236699999999996
Q ss_pred h
Q 033455 93 R 93 (119)
Q Consensus 93 ~ 93 (119)
+
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 5
No 137
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=60.77 E-value=32 Score=27.65 Aligned_cols=56 Identities=13% Similarity=-0.125 Sum_probs=43.5
Q ss_pred CCCCCccHHHHHHHHHHhcCC--cchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC
Q 033455 3 TLLFDHDFEDYFPSMIKRLGA--EGFISELCYGFQRLMDGEKGLITFESLKRNSLLLG 58 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~--~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~ 58 (119)
++.|+|+..+...++...-.. .-..+.++.+....+.+.+|.|++++|..++..+.
T Consensus 30 ~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 30 DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 578999999988888754322 12256788899999999999999999988766553
No 138
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=60.76 E-value=22 Score=20.07 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEIVCMLSEG 74 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~ 74 (119)
+-.|+.+-++..+..+|. ++++..++++.+..
T Consensus 29 NPpine~mir~M~~QMG~-kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGR-KPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCC-CccHHHHHHHHHHH
Confidence 456889999999999999 99999999887754
No 139
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=60.51 E-value=24 Score=20.17 Aligned_cols=49 Identities=18% Similarity=0.070 Sum_probs=34.9
Q ss_pred CCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 5 LFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 5 ~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
+--++|...+..+...+.. .....+...|+.=..++|+.++|...++.+
T Consensus 6 sp~~~F~~L~~~l~~~l~~----~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLPP----SKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4458888888888887753 234445555555567999999998887764
No 140
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=58.96 E-value=14 Score=27.95 Aligned_cols=52 Identities=10% Similarity=-0.127 Sum_probs=34.1
Q ss_pred CCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 033455 5 LFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLL 56 (119)
Q Consensus 5 ~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 56 (119)
++.|+-.|+...=...........-.+..|+..|.|+|.+|+..|+...|..
T Consensus 347 nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 347 NNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred cCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3445544443322222222344556788899999999999999999888754
No 141
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=58.79 E-value=22 Score=21.76 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=34.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHH---HHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEI---VCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~---~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
+-.++.+++..++...|. .+-+ ...++....+....++-++.+.+|.. .|.+++.|
T Consensus 33 ~~p~s~~eL~~~l~~~g~----~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~-~p~LikRP 91 (105)
T cd03035 33 KDGLDAATLERWLAKVGW----ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLE-HPSLIKRP 91 (105)
T ss_pred cCCCCHHHHHHHHHHhCh----HHHHccCchHHHhCChhhhccCCHHHHHHHHHh-CcCeeecc
Confidence 456778888888876652 1001 12344444442245788999999876 68888765
No 142
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=58.76 E-value=24 Score=18.14 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=15.4
Q ss_pred HHHHHHhhhc--CCCCCcccHHHHHHHHHh
Q 033455 29 ELCYGFQRLM--DGEKGLITFESLKRNSLL 56 (119)
Q Consensus 29 ~~~~~F~~~D--~~~~G~I~~~el~~~l~~ 56 (119)
.+..+|..|- ..+...++..||+..+..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3455566554 234556666666666543
No 143
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=57.45 E-value=17 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=19.0
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 30 LCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 30 ~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
+-.....||.+++|+|+.-+++.++..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 4456778888889999988888877543
No 144
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=57.41 E-value=35 Score=20.38 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=34.9
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
+|.+|.++...+- +. +.+.+..+.++..... .|.-.|..|+.++...
T Consensus 32 ~gvlt~~~~~~I~---~~-~t~~~k~~~Lld~L~~--RG~~AF~~F~~aL~~~ 78 (90)
T cd08332 32 KDILTDSMAESIM---AK-PTSFSQNVALLNLLPK--RGPRAFSAFCEALRET 78 (90)
T ss_pred cCCCCHHHHHHHH---cC-CCcHHHHHHHHHHHHH--hChhHHHHHHHHHHhc
Confidence 5899988866654 23 5667778888877664 4668899999999764
No 145
>PRK00523 hypothetical protein; Provisional
Probab=56.50 E-value=28 Score=20.15 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEIVCMLSEG 74 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~ 74 (119)
+=.|+.+-++..+..+|. ++|+.+++++.+..
T Consensus 37 NPpine~mir~M~~QMGq-KPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGR-KPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCC-CccHHHHHHHHHHH
Confidence 456888899999999999 99999999988765
No 146
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=56.25 E-value=36 Score=19.42 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCccc--HHHHHHHHHhcCCCCCCHHH
Q 033455 8 HDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLIT--FESLKRNSLLLGLNDMMDDE 66 (119)
Q Consensus 8 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~--~~el~~~l~~~~~~~~~~~e 66 (119)
.++++|...+......+.....++.-+..+-. +++.|. ...|..++..+.. ..+++.
T Consensus 27 ~~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q-~~esv~~y~~rf~~l~~~~~~-~~~e~~ 85 (96)
T PF03732_consen 27 ITWEEFKDAFRKRFFPPDRKEQARQELNSLRQ-GNESVREYVNRFRELARRAPP-PMDEEM 85 (96)
T ss_pred CCHHHHHHHHHHHHhhhhccccchhhhhhhhc-cCCcHHHHHHHHHHHHHHCCC-CcCHHH
Confidence 46777777777666544333344444444444 334333 3334444444443 344433
No 147
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=55.40 E-value=18 Score=20.27 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=30.2
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCC
Q 033455 41 EKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDG 78 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~ 78 (119)
.++.++..++...+...|. .++++.+..-++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~-~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGE-ELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcCh-hhhHHHHHHHHHHHHHCC
Confidence 4567888889888888888 888888998888877553
No 148
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=55.40 E-value=26 Score=23.95 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=24.5
Q ss_pred hcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033455 37 LMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 37 ~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d 75 (119)
+..+.+|++..++|...+..-+. .++.+++++++...+
T Consensus 25 L~~d~~G~v~v~dLL~~~~~~~~-~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 25 LVMDPDGWVSVDDLLRALRFKGL-WVTEEDIREVVETDD 62 (186)
T ss_dssp ----TT--EEHHHHHHHHHHT-T-T--HHHHHHHHHH-S
T ss_pred CccCCCCCEeHHHHHHHHHHcCC-CCCHHHHHHHHhhCC
Confidence 35688999999999998888777 788999999987644
No 149
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=55.13 E-value=13 Score=30.27 Aligned_cols=46 Identities=9% Similarity=0.004 Sum_probs=38.9
Q ss_pred CCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHH
Q 033455 3 TLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESL 50 (119)
Q Consensus 3 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el 50 (119)
+.+|.++|.++...+...... ...+.+.-.|+++|.+++ ....++.
T Consensus 567 s~~g~Ltf~~lv~gL~~l~~~-~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 567 SMTGLLTFKDLVSGLSILKAG-DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CCcceeEHHHHHHHHHHHHhh-hHHHHHHHHHhhccCCcc-ccccccc
Confidence 467899999999999877653 556789999999999999 8888887
No 150
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=55.11 E-value=39 Score=25.24 Aligned_cols=31 Identities=16% Similarity=0.026 Sum_probs=12.1
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033455 43 GLITFESLKRNSLLLGLNDMMDDEIVCMLSEG 74 (119)
Q Consensus 43 G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~ 74 (119)
|.||.+|-...+..... ..++..++.+++.+
T Consensus 301 G~itReeal~~v~~~d~-~~~~~~~~~~~~~l 331 (343)
T TIGR03573 301 GRITREEAIELVKEYDG-EFPKEDLEYFLKYL 331 (343)
T ss_pred CCCCHHHHHHHHHHhcc-cccHHHHHHHHHHh
Confidence 44444443333333322 33333344444433
No 151
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=55.00 E-value=45 Score=20.20 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=35.6
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 41 EKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
++|.+|.++...+- +. +.+.+.++.++..+.. .|.-.|..|+.++..
T Consensus 32 ~~gIlT~~~~e~I~---a~-~T~~~k~~~LLdiLp~--RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIE---SQ-TTSRRKTMKLLDILPS--RGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHH---cc-CChHHHHHHHHHHHHh--hChhHHHHHHHHHHH
Confidence 46899988877665 23 5677788888887663 467889999999965
No 152
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=54.97 E-value=23 Score=27.02 Aligned_cols=71 Identities=20% Similarity=0.100 Sum_probs=40.0
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-CCCcccHHHHHHHHHhcCcCccCCcccccccChhhhhhhc
Q 033455 43 GLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLD-GDGALSQFEFCILMVRLSPGLMEGSPQSMEGSPESMVEDL 117 (119)
Q Consensus 43 G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~-~dg~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (119)
..++.++|...|. ... . +.+.|...+...... --=++.|.||+..|..+ ..+-+..++--+..+-.++-+|
T Consensus 6 ~~~~LeeLe~kLa-~~d-~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~I-e~~~~~s~qeKFl~IR~KlleL 77 (379)
T PF11593_consen 6 PNLKLEELEEKLA-SND-N-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANI-EEMNNKSPQEKFLLIRSKLLEL 77 (379)
T ss_pred CCCcHHHHHHHHh-cCC-c-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hcccccCHHHHHHHHHHHHHHH
Confidence 4677888888776 344 4 666665555543322 12368889999998876 3333333333333333444444
No 153
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=54.73 E-value=62 Score=21.61 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=8.5
Q ss_pred CCccHHHHHHHHHHhcC
Q 033455 6 FDHDFEDYFPSMIKRLG 22 (119)
Q Consensus 6 g~i~~~eF~~~~~~~~~ 22 (119)
+.|++..|+..+..+++
T Consensus 98 ~~i~~~~ff~~lQ~~lG 114 (175)
T PF04876_consen 98 GLIDIGKFFDILQPKLG 114 (175)
T ss_pred cceeHHHHHHHHHHHhh
Confidence 34555555555544443
No 154
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=54.34 E-value=32 Score=19.00 Aligned_cols=32 Identities=9% Similarity=-0.007 Sum_probs=24.0
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033455 43 GLITFESLKRNSLLLGLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 43 G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d 75 (119)
-.+|.+|+...+..++. .++..++-.+|...-
T Consensus 8 ~~lTeEEl~~~i~~L~~-~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDE-IPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcC-CCCHHHHHHHHHHHH
Confidence 34677888888888887 788877877776544
No 155
>PRK10026 arsenate reductase; Provisional
Probab=53.99 E-value=49 Score=21.63 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=37.4
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHH---HHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEI---VCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~---~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
.-.++.+++..++..+|. +. .+-+ ...++....+. ..++.++.+.+|.. .|.+++.|
T Consensus 36 ~~ppt~~eL~~~l~~~g~-~~-~~lint~~~~yr~L~~~~-~~ls~~e~l~ll~~-~P~LIKRP 95 (141)
T PRK10026 36 ETPPTRDELVKLIADMGI-SV-RALLRKNVEPYEELGLAE-DKFTDDQLIDFMLQ-HPILINRP 95 (141)
T ss_pred CCCcCHHHHHHHHHhCCC-CH-HHHHHcCCchHHHcCCCc-cCCCHHHHHHHHHh-CccceeCc
Confidence 456789999999988774 21 1111 12455555443 35889999999876 67777754
No 156
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=53.82 E-value=8.5 Score=26.47 Aligned_cols=89 Identities=15% Similarity=0.022 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc----CCCCCCccc
Q 033455 8 HDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEG----DLDGDGALS 83 (119)
Q Consensus 8 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~----d~~~dg~I~ 83 (119)
|.++-|-+.++...-. ...+..+++|..||.+.--..+.+++..++...|. --....++.++.+. ... +..=|
T Consensus 36 l~Le~fQAGLSW~tVL-~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gI-IR~r~KI~A~i~NA~~~l~l~-~e~Gs 112 (188)
T COG2818 36 LCLEGFQAGLSWLTVL-KKREAFREAFHGFDPEKVAAMTEEDVERLLADAGI-IRNRGKIKATINNARAVLELQ-KEFGS 112 (188)
T ss_pred HHHHHHhccchHHHHH-HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch-hhhHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 5566666555544321 23467899999999999999999999999988776 33444454444322 111 12236
Q ss_pred HHHHHHHHHhcCcCcc
Q 033455 84 QFEFCILMVRLSPGLM 99 (119)
Q Consensus 84 ~~eF~~~l~~~~~~~~ 99 (119)
|.+|+..+....+..+
T Consensus 113 f~~flWsf~~~~~~~~ 128 (188)
T COG2818 113 FSEFLWSFVGGKPSRN 128 (188)
T ss_pred HHHHHHHhcCCCcccc
Confidence 7778777766555544
No 157
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=53.04 E-value=39 Score=23.02 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=29.8
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033455 38 MDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 38 D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d 75 (119)
..+.+|++..++|...+..-+. .++.++++++...-+
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~-~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYK-WVTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccC-CCCHHHHHHHHHcCC
Confidence 4588999999999988876555 789999998887533
No 158
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.02 E-value=33 Score=19.76 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=27.9
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d 75 (119)
+=.|+.+-++..+...|. +.|+..++++.+...
T Consensus 36 NPpine~~iR~M~~qmGq-KpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQ-KPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 357888999999999999 999999998887653
No 159
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=52.78 E-value=48 Score=19.71 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=3.3
Q ss_pred CCcccHHH
Q 033455 42 KGLITFES 49 (119)
Q Consensus 42 ~G~I~~~e 49 (119)
||.++..|
T Consensus 13 DG~v~~~E 20 (106)
T cd07316 13 DGRVSEAE 20 (106)
T ss_pred cCCcCHHH
Confidence 34444433
No 160
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=49.55 E-value=72 Score=20.83 Aligned_cols=74 Identities=14% Similarity=-0.013 Sum_probs=37.6
Q ss_pred CCCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCC-------CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 033455 1 MATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGE-------KGLITFESLKRNSLLLGLNDMMDDEIVCMLSE 73 (119)
Q Consensus 1 ~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~-------~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~ 73 (119)
|+..-+.++..+|..+= ... + -...++..+.+.|..+| .+.|+.+-|+..|...-...++++-.+.+|..
T Consensus 1 ~~~~~~~lsp~eF~qLq-~y~-e-ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~s 77 (138)
T PF14513_consen 1 MAKEWVSLSPEEFAQLQ-KYS-E-YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLS 77 (138)
T ss_dssp -----S-S-HHHHHHHH-HHH-H-H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHH
T ss_pred CccceeccCHHHHHHHH-HHH-H-HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45556788899987642 222 1 12234555555553333 56999999999998854436888888999887
Q ss_pred cCCC
Q 033455 74 GDLD 77 (119)
Q Consensus 74 ~d~~ 77 (119)
+-..
T Consensus 78 F~~~ 81 (138)
T PF14513_consen 78 FQKK 81 (138)
T ss_dssp S---
T ss_pred HhCc
Confidence 7643
No 161
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=49.45 E-value=33 Score=20.68 Aligned_cols=54 Identities=11% Similarity=-0.031 Sum_probs=39.5
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccC
Q 033455 41 EKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLME 100 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~ 100 (119)
..|.|+.++...+-. . +.+.+..+.++.... ..|.-.|.-|+..+....|.+.+
T Consensus 34 ~~~Vlt~ee~e~I~~---~-~t~~~qAr~Lld~l~--~KG~~A~~~F~~~L~e~~~~L~~ 87 (94)
T cd08329 34 SANVITEQEYDVIKQ---K-TQTPLQARELIDTVL--VKGNAAAEVFRNCLKKNDPVLYR 87 (94)
T ss_pred HcCCCCHHHHHHHHc---C-CChHHHHHHHHHHHH--hhhHHHHHHHHHHHHhcCHhHHH
Confidence 468999998766542 3 455678888888766 44678899999999877765543
No 162
>PRK01844 hypothetical protein; Provisional
Probab=49.18 E-value=41 Score=19.44 Aligned_cols=31 Identities=23% Similarity=0.135 Sum_probs=27.1
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033455 43 GLITFESLKRNSLLLGLNDMMDDEIVCMLSEG 74 (119)
Q Consensus 43 G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~ 74 (119)
=.|+.+-++..+..+|. ++|+..++++.+..
T Consensus 37 Ppine~mir~Mm~QMGq-kPSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQ-KPSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHhCC-CccHHHHHHHHHHH
Confidence 46888999999999999 99999999888765
No 163
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=49.03 E-value=55 Score=19.32 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=35.2
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcC
Q 033455 41 EKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLS 95 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~ 95 (119)
++|.++.++...+- +. +...+..++++..... .|.=.|..|+..+....
T Consensus 27 ~~~Vlt~~~~e~I~---~~-~tr~~q~~~LLd~L~~--RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 27 SRGVFTPDMIEEIQ---AA-GSRRDQARQLLIDLET--RGKQAFPAFLSALRETG 75 (84)
T ss_pred hcCCCCHHHHHHHH---cC-CCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcC
Confidence 35788887766654 23 5566778888877764 46678999999998754
No 164
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=48.92 E-value=39 Score=19.08 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=18.9
Q ss_pred hhhcCCCCCcccHHHHHHHHHh
Q 033455 35 QRLMDGEKGLITFESLKRNSLL 56 (119)
Q Consensus 35 ~~~D~~~~G~I~~~el~~~l~~ 56 (119)
++||.....+|+.+++..++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 3689999999999999988875
No 165
>PHA03155 hypothetical protein; Provisional
Probab=48.26 E-value=69 Score=20.26 Aligned_cols=90 Identities=13% Similarity=-0.110 Sum_probs=54.3
Q ss_pred CCCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCC
Q 033455 1 MATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDG 80 (119)
Q Consensus 1 ~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg 80 (119)
|+++.-..+.++...-+.++-.+ ...++.....--..+++.+++.+=...+...-. .++..-.+.+-......-.+
T Consensus 1 mas~~~~~tvEeLaaeL~kL~~E---NK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~-~Lt~~A~~KIe~kVrk~~~~ 76 (115)
T PHA03155 1 MASGRACADVEELEKELQKLKIE---NKALKKKLLQHGNPEDELLTPAQKDAIINSLVN-KLTKKAEEKIRERVLKDLLP 76 (115)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHccCCCCccccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 78888889999988887766432 245666665544566799998875444444322 34333333333333333345
Q ss_pred cccHHHHHHHHHhc
Q 033455 81 ALSQFEFCILMVRL 94 (119)
Q Consensus 81 ~I~~~eF~~~l~~~ 94 (119)
-++-+++...+.++
T Consensus 77 ~vTk~q~~~al~~l 90 (115)
T PHA03155 77 LVSKNQCMEAIADI 90 (115)
T ss_pred hccHHHHHHHHhcC
Confidence 56777777776653
No 166
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=47.62 E-value=60 Score=20.75 Aligned_cols=57 Identities=18% Similarity=0.046 Sum_probs=37.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHH---HHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEI---VCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~---~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
...++.+++..++..++. +... -+ ...++..+.+. ..++-++.+.+|.. .|.+++.|
T Consensus 34 ~~~~s~~eL~~~l~~~~~-~~~~-lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~-~P~LikRP 93 (132)
T PRK13344 34 KEPLTKEEILAILTKTEN-GIES-IVSSKNRYAKALDCDI-EELSVNEVIDLIQE-NPRILKSP 93 (132)
T ss_pred CCCCCHHHHHHHHHHhCC-CHHH-hhccCcHHHHhCCcch-hcCCHHHHHHHHHh-CccceeCc
Confidence 456888999999988764 2211 11 22445555333 46888999998876 67887754
No 167
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=47.02 E-value=60 Score=20.65 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
+-.++.+++..++..+|...+-. .-...++..+.+. ..++-++.+.+|.. .|.+++.|
T Consensus 35 ~~p~t~~eL~~~l~~~g~~~lin-~~~~~~r~l~~~~-~~ls~~e~i~lm~~-~P~LIKRP 92 (126)
T TIGR01616 35 KEPWHADTLRPYFGNKPVGSWFN-RAAPRVKSGEVNP-DSIDEASALALMVS-DPLLIRRP 92 (126)
T ss_pred CCCcCHHHHHHHHHHcCHHHHHh-ccchHhhhCCCCc-ccCCHHHHHHHHHh-CcCeEeCC
Confidence 45578888888887764200000 0011344444332 45788899998875 67777754
No 168
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=46.36 E-value=52 Score=26.81 Aligned_cols=65 Identities=15% Similarity=0.050 Sum_probs=41.0
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHh-cCCCCCCHHHHHHHHH---hcCCC--CCCcccHHHHHHHH
Q 033455 26 FISELCYGFQRLMDGEKGLITFESLKRNSLL-LGLNDMMDDEIVCMLS---EGDLD--GDGALSQFEFCILM 91 (119)
Q Consensus 26 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~-~~~~~~~~~e~~~l~~---~~d~~--~dg~I~~~eF~~~l 91 (119)
....+.++|++.|.|.+|.++-.|+...=.. ++. ++...+++.+-. ..-.+ .++.++...|..+-
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~-pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~ 263 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNT-PLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLN 263 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCC-CCCHHHHHHHHHHHHhhcCchhhhccccccchHHHH
Confidence 3457889999999999999998887664333 344 677766555433 22222 23445555565443
No 169
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=45.23 E-value=40 Score=18.66 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHH
Q 033455 44 LITFESLKRNSLLLGLNDMMDDEIVCM 70 (119)
Q Consensus 44 ~I~~~el~~~l~~~~~~~~~~~e~~~l 70 (119)
.|+.++|..+|..... .++.+++++.
T Consensus 29 ~it~~DF~~Al~~~kp-SVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKP-SVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGG-SS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 4788888888888887 7888877653
No 170
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=44.84 E-value=7.9 Score=24.49 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=24.5
Q ss_pred CCCcccHHHHHHHHHhc--CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 41 EKGLITFESLKRNSLLL--GLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~--~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
-||.|+.+|...+...+ .. .++..+...+...++......+++.+|+..+.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 88 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERF-GLSPEEAEELIELADELKQEPIDLEELLRELR 88 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCG-CGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 46777766655544433 12 34444555555544443333455566655543
No 171
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=44.59 E-value=79 Score=19.90 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=40.9
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033455 31 CYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCI 89 (119)
Q Consensus 31 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~ 89 (119)
..+|-+.-..++..+|.+++..++...|. ......+..+++.+. | .+.+|++.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGv-eVd~~~~~l~~~~L~----G-KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNA-DVEDDVLDNFFKSLE----G-KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 34566666677788999999999999998 888888888888774 2 45566655
No 172
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=43.99 E-value=25 Score=20.49 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=21.3
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC
Q 033455 41 EKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLD 77 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~ 77 (119)
..|+||.+++..+|... .++.+.+..++..+...
T Consensus 18 ~~G~lT~~eI~~~L~~~---~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 18 KKGYLTYDEINDALPED---DLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHSS-BHHHHHHH-S-S------HHHHHHHHHHHHTT
T ss_pred hcCcCCHHHHHHHcCcc---CCCHHHHHHHHHHHHHC
Confidence 46999999999888532 46778888888766533
No 173
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=43.40 E-value=61 Score=18.23 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=35.0
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcC
Q 033455 41 EKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLS 95 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~ 95 (119)
.+|.++.++...+.. . ....+...+++..... .|.=.|..|+..+....
T Consensus 24 ~~~vlt~~e~~~i~~---~-~~~~~k~~~Lld~l~~--kg~~af~~F~~~L~~~~ 72 (80)
T cd01671 24 SDGVLTEEEYEKIRS---E-STRQDKARKLLDILPR--KGPKAFQSFLQALQETD 72 (80)
T ss_pred HcCCCCHHHHHHHHc---C-CChHHHHHHHHHHHHh--cChHHHHHHHHHHHhcC
Confidence 458899888776542 2 3466778888887765 35567899999997654
No 174
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=43.39 E-value=98 Score=26.57 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=38.7
Q ss_pred CCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHH
Q 033455 5 LFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKR 52 (119)
Q Consensus 5 ~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~ 52 (119)
.|.++|.+|...|.+.........++..+|+.+-++.. +|..++|..
T Consensus 802 ~~qv~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 802 QGQVQLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred ccceeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 37799999999999988877777888899998877766 777777765
No 175
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=42.56 E-value=64 Score=18.29 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033455 47 FESLKRNSLLLGLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 47 ~~el~~~l~~~~~~~~~~~e~~~l~~~~d 75 (119)
.+++..++...+. .++..++..+++.-+
T Consensus 16 d~~m~~if~l~~~-~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 16 DDDMIEIFALAGF-EVSKAELSAWLRKED 43 (68)
T ss_pred hHHHHHHHHHcCC-ccCHHHHHHHHCCCC
Confidence 3456666666666 677777766666543
No 176
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=41.36 E-value=1e+02 Score=20.15 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=29.8
Q ss_pred CCCCccHHHHHHHHHHhcCCc---chHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 4 LLFDHDFEDYFPSMIKRLGAE---GFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 4 ~~g~i~~~eF~~~~~~~~~~~---~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
....++.++|+.-.+...+.. .....+..+|..+. ..|++.++.++.+.+
T Consensus 72 ~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~----r~Is~gei~~v~s~L 124 (135)
T COG5502 72 PKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLK----RHISPGEIDKVRSRL 124 (135)
T ss_pred CCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHH----HhCCHHHHHHHHHHC
Confidence 345688888888777766432 22223446677664 346667766666554
No 177
>PRK12559 transcriptional regulator Spx; Provisional
Probab=40.55 E-value=97 Score=19.76 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=37.7
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHH---HHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEI---VCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~---~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
...++.+++..++..++. +.. +-+ ...++..+.+. ..++-++.+.+|.. .|.+++.|
T Consensus 34 ~~~~s~~el~~~l~~~~~-g~~-~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~-~P~LikRP 93 (131)
T PRK12559 34 SNSMTVDELKSILRLTEE-GAT-EIISTRSKTFQDLNINI-EELSLNEFYKLIIE-HPLMLRRP 93 (131)
T ss_pred CCcCCHHHHHHHHHHcCC-CHH-HHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHh-CcceEeCC
Confidence 456889999999988765 311 111 22455555443 35888999999876 68888754
No 178
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.11 E-value=49 Score=25.79 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=37.6
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHH
Q 033455 32 YGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFC 88 (119)
Q Consensus 32 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~ 88 (119)
++|-.+-+ -+|+|+-..-+..+-. . +++..-+-++|+..|.|.||.++-+||.
T Consensus 448 e~fy~l~p-~~gk~sg~~ak~~mv~--s-klpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 448 EIFYTLSP-VNGKLSGRNAKKEMVK--S-KLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hhhhcccc-cCceeccchhHHHHHh--c-cCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 44444433 2577775554444433 2 6777788999999999999999999994
No 179
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=40.06 E-value=33 Score=16.41 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=11.9
Q ss_pred CCcccHHHHHHHHHhc
Q 033455 79 DGALSQFEFCILMVRL 94 (119)
Q Consensus 79 dg~I~~~eF~~~l~~~ 94 (119)
.|+|++++++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5778888888877653
No 180
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=39.79 E-value=93 Score=19.33 Aligned_cols=44 Identities=11% Similarity=-0.020 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 49 SLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 49 el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
-+.++..-+.. .++.+|-+.+....+.-.+|.|+....+.++..
T Consensus 54 vl~Hi~Gyfk~-~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 54 VLQHIFGYFKK-KLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKH 97 (117)
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 34455555565 788888777777777777899999888777754
No 181
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=38.72 E-value=1.1e+02 Score=20.03 Aligned_cols=54 Identities=13% Similarity=0.056 Sum_probs=35.4
Q ss_pred CCCccHHHHHHHHHHh--cCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC
Q 033455 5 LFDHDFEDYFPSMIKR--LGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLG 58 (119)
Q Consensus 5 ~g~i~~~eF~~~~~~~--~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~ 58 (119)
...++-..|.+++..- +...-....+--+|..+-..+...|+.++|..+|..+.
T Consensus 16 ~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 16 GTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp SSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4457778888877632 22223445677788887666777799999999988763
No 182
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=38.49 E-value=88 Score=18.70 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=35.9
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 40 GEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 40 ~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
-++|.|+.++...+. .. +.+++.+++++.... ..|..-.+-|..++...
T Consensus 25 l~n~~it~E~y~~V~---a~-~T~qdkmRkLld~v~--akG~~~k~~F~~iL~e~ 73 (85)
T cd08324 25 LKNDYFSTEDAEIVC---AC-PTQPDKVRKILDLVQ--SKGEEVSEYFLYLLQQL 73 (85)
T ss_pred hccCCccHHHHHHHH---hC-CCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHH
Confidence 457999999987765 33 788889999988744 34666667787777654
No 183
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.03 E-value=92 Score=18.76 Aligned_cols=53 Identities=15% Similarity=-0.038 Sum_probs=37.8
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcC
Q 033455 41 EKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPG 97 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~ 97 (119)
+.|.+|.+....+-.+-+. +-..+.+++++.... . |.=-|..|+.++..+...
T Consensus 30 ~~~ilT~~d~e~I~aa~~~-~g~~~~ar~LL~~L~-r--g~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 30 EQGLLTEEDRNRIEAATEN-HGNESGARELLKRIV-Q--KEGWFSKFLQALRETEHH 82 (88)
T ss_pred hcCCCCHHHHHHHHHhccc-cCcHHHHHHHHHHhc-c--CCcHHHHHHHHHHHcCch
Confidence 3567777776665554444 566778889998888 4 445789999999887653
No 184
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=37.60 E-value=42 Score=19.84 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=26.6
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 51 KRNSLLL-GLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 51 ~~~l~~~-~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
..||+.- |- .+++.-++.+-+.+.......|+|+|+|.+-..
T Consensus 35 ~~WLskeRgG-~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 35 ATWLSKERGG-QIPEKVMDSLSKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred HHHHHHhhCC-CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4566653 44 566655555555555555667999999987543
No 185
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.46 E-value=39 Score=25.99 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccC-CcccccccChhhh
Q 033455 62 MMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLME-GSPQSMEGSPESM 113 (119)
Q Consensus 62 ~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~-~~~~~~~~~~~~~ 113 (119)
...+++++.|+.+|+.++|.|+.+-|..+|.....-..+ +--+.+.+.++|+
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE 358 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPE 358 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChh
Confidence 345679999999999999999999999988776533333 2233445555544
No 186
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=37.38 E-value=1.1e+02 Score=19.44 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=36.8
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHH---HHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEI---VCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~---~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
....+.+++..++..++. +. .+-+ ...++....+. ..++-++.+.+|.. .|.+++.|
T Consensus 34 ~~~~~~~eL~~~l~~~~~-g~-~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~-~p~LikRP 93 (131)
T PRK01655 34 SSPLTIDEIKQILRMTED-GT-DEIISTRSKVFQKLNVDV-ESLSLQDLIKLISD-NPGLLRRP 93 (131)
T ss_pred CChhhHHHHHHHHHHhcC-CH-HHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHh-CcceEeCC
Confidence 456678889999988764 31 1111 12455555443 45888999998876 67887754
No 187
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=37.24 E-value=43 Score=20.41 Aligned_cols=59 Identities=22% Similarity=0.115 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHH--HHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDD--EIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~--e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
.-.++.+++..++..+|. +..+- .-...++..+......++-++.+.+|.. .|.+++.|
T Consensus 30 k~p~s~~el~~~l~~~~~-~~~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~-~p~LikRP 90 (110)
T PF03960_consen 30 KEPLSREELRELLSKLGN-GPDDLINTRSKTYKELGKLKKDDLSDEELIELLLE-NPKLIKRP 90 (110)
T ss_dssp TS---HHHHHHHHHHHTS-SGGGGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHH-SGGGB-SS
T ss_pred hCCCCHHHHHHHHHHhcc-cHHHHhcCccchHhhhhhhhhhhhhhHHHHHHHHh-ChhheeCC
Confidence 345889999999998883 21110 0012344444112345889999999986 57887764
No 188
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.76 E-value=91 Score=20.63 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=42.9
Q ss_pred HHHhhhcCCCCCcccHHH---HHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 32 YGFQRLMDGEKGLITFES---LKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 32 ~~F~~~D~~~~G~I~~~e---l~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
-+|++... ||.++..| |+.++.. .. +++.+++..++.....-+...|++-.|...+++
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~-~f-~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKE-NF-GIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHH-Hc-CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45777654 56677666 4444544 34 789999999999888777888999999888874
No 189
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.49 E-value=23 Score=30.03 Aligned_cols=62 Identities=18% Similarity=0.039 Sum_probs=50.2
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
.....|+..|..++|.|+..+-...+... ++...-+-++|...|..+.|..+..+|...++.
T Consensus 12 ~~~~~~~~~d~~~~G~i~g~~a~~f~~~s---~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 12 LFDQYFKSADPQGDGRITGAEAVAFLSKS---GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred hHHHhhhccCcccCCcccHHHhhhhhhcc---ccchhhhhccccccccccCCccccccccccchH
Confidence 45578999999999999999877666554 467777888899999888899999999877654
No 190
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.74 E-value=18 Score=24.64 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC--C-CCCcccHHHHHHHHHhcCc
Q 033455 27 ISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDL--D-GDGALSQFEFCILMVRLSP 96 (119)
Q Consensus 27 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~--~-~dg~I~~~eF~~~l~~~~~ 96 (119)
.+..+++|.-||...--..+.+++.+++..-+. --....++.++.+.-. + ..+ ||.+|+.-.....|
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~I-IRnr~KI~Avi~NA~~~l~i~~e--sf~~ylW~fv~~~P 121 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGI-IRNRGKIEATIANARAALQLEQN--DLVEFLWSFVNHQP 121 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccc-hhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHhccCCCC
Confidence 457889999999999888999999988887665 4445556555442211 0 112 78888866654444
No 191
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=35.69 E-value=1.1e+02 Score=18.92 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=37.6
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC---CCCCcccHHHHHHHHHhc
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDL---DGDGALSQFEFCILMVRL 94 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~---~~dg~I~~~eF~~~l~~~ 94 (119)
.+..-|..+-+ +|++....|..++ |. +-+.+-..++|..+.. -..+.|+.+|+...+..+
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CI---GM-~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECI---GM-KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHH---T---S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhc---CC-cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 34555666655 8999999999988 65 5566666777765432 124679999988877543
No 192
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=35.67 E-value=69 Score=24.45 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=44.2
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc---ccHHHHHHHHHhcCcCccCC
Q 033455 33 GFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGA---LSQFEFCILMVRLSPGLMEG 101 (119)
Q Consensus 33 ~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~---I~~~eF~~~l~~~~~~~~~~ 101 (119)
....+|..+.|+++.-..+.++..+.. +--.+.++-+|.... +++|- |.|..|.+-+.+......+.
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~-gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~ 184 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCG-GKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEG 184 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhcc-chHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcC
Confidence 344689999999999998888887655 444556777777655 55675 55555655555543334444
No 193
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=35.42 E-value=92 Score=22.52 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=30.3
Q ss_pred CCCCcccHHHHHHHHHhc--CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 40 GEKGLITFESLKRNSLLL--GLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 40 ~~~G~I~~~el~~~l~~~--~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
.-||.|+..|.. ....+ .. +++.++-+.+...++.......++.+|+..+..
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~-~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRM-NLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHc-CCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 558999999876 33332 12 456666333333333333444788888887765
No 194
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=35.06 E-value=1.1e+02 Score=18.92 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
.-.++.+++..++..+|...+-.. -...++....+. ..++-++.+.+|.. .|.+++.|
T Consensus 34 ~~p~s~~eL~~~l~~~g~~~l~n~-~~~~~r~~~~~~-~~ls~~e~~~ll~~-~P~LikRP 91 (113)
T cd03033 34 TEPWTAETLRPFFGDLPVAEWFNP-AAPRVKSGEVVP-EALDEEEALALMIA-DPLLIRRP 91 (113)
T ss_pred cCCCCHHHHHHHHHHcCHHHHHhc-ccHHHHhcCCCc-cCCCHHHHHHHHHh-CcceeeCC
Confidence 355788888888886653010000 012344433332 45788999998875 68888764
No 195
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=35.01 E-value=71 Score=18.91 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 033455 45 ITFESLKRNSLLLGLNDMMDDEIVCMLS 72 (119)
Q Consensus 45 I~~~el~~~l~~~~~~~~~~~e~~~l~~ 72 (119)
|+.+++.++..-... .+++++++.+..
T Consensus 1 i~~~~v~~lA~La~L-~l~eee~~~~~~ 27 (93)
T TIGR00135 1 ISDEEVKHLAKLARL-ELSEEEAESFAG 27 (93)
T ss_pred CCHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 456777776666666 788888766544
No 196
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=33.93 E-value=1e+02 Score=21.68 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHhcCC
Q 033455 5 LFDHDFEDYFPSMIKRLGA 23 (119)
Q Consensus 5 ~g~i~~~eF~~~~~~~~~~ 23 (119)
.|.++|+.++.-|.....+
T Consensus 175 ~geldFn~iL~~Mk~~~~E 193 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNE 193 (246)
T ss_pred cCCCcHHHHHHHHHHhhcc
Confidence 5778888888888776543
No 197
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.88 E-value=47 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=26.8
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 033455 26 FISELCYGFQRLMDGEKGLITFESLKRNSLL 56 (119)
Q Consensus 26 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 56 (119)
...++..+.++.|.+.||-++..||..++-.
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3567888999999999999999999888764
No 198
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=33.23 E-value=1.3e+02 Score=19.54 Aligned_cols=15 Identities=7% Similarity=0.109 Sum_probs=11.8
Q ss_pred CCCccHHHHHHHHHH
Q 033455 5 LFDHDFEDYFPSMIK 19 (119)
Q Consensus 5 ~g~i~~~eF~~~~~~ 19 (119)
+|.|+..+|+..++.
T Consensus 42 ng~IsVreFVr~La~ 56 (131)
T PF00427_consen 42 NGQISVREFVRALAK 56 (131)
T ss_dssp TTSS-HHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHc
Confidence 689999999988874
No 199
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=33.15 E-value=16 Score=25.14 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC----CCCCCcccH
Q 033455 9 DFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGD----LDGDGALSQ 84 (119)
Q Consensus 9 ~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d----~~~dg~I~~ 84 (119)
.++-|...++...-. ...+..+++|.-||.+.--..+.+++..++..-+. --....++.++.++- .... .-||
T Consensus 36 ~Le~~QAGLSW~tIL-~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~I-IRnr~KI~Avi~NA~~~l~i~~e-~gSf 112 (187)
T PRK10353 36 CLEGQQAGLSWITVL-KKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGI-IRHRGKIQAIIGNARAYLQMEQN-GEPF 112 (187)
T ss_pred HHHHhcccccHHHHH-HHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchh-HHhHHHHHHHHHHHHHHHHHHHh-cCCH
Confidence 344444444333221 23457899999999988888888999888877655 334455555544221 1111 2478
Q ss_pred HHHHHHHHhcCcCc
Q 033455 85 FEFCILMVRLSPGL 98 (119)
Q Consensus 85 ~eF~~~l~~~~~~~ 98 (119)
.+|+.-.....|-+
T Consensus 113 ~~ylW~fv~~~p~~ 126 (187)
T PRK10353 113 ADFVWSFVNHQPQV 126 (187)
T ss_pred HHHHhhccCCCccc
Confidence 88887665544433
No 200
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=33.03 E-value=63 Score=18.50 Aligned_cols=17 Identities=12% Similarity=-0.081 Sum_probs=11.8
Q ss_pred CCCCcccHHHHHHHHHh
Q 033455 40 GEKGLITFESLKRNSLL 56 (119)
Q Consensus 40 ~~~G~I~~~el~~~l~~ 56 (119)
-..|++.-+|+..++..
T Consensus 26 ~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 26 LASGKLRGEEINSLLEA 42 (75)
T ss_pred HHcCcccHHHHHHHHHH
Confidence 34678888888777654
No 201
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=32.92 E-value=78 Score=16.95 Aligned_cols=30 Identities=7% Similarity=0.129 Sum_probs=19.5
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEIVCMLS 72 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~ 72 (119)
.|.|+.+||..-+...-. --+..++..++.
T Consensus 21 ~GrL~~~Ef~~R~~~a~~-A~t~~eL~~l~~ 50 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYA-ARTRGELDALFA 50 (53)
T ss_pred CCCCCHHHHHHHHHHHHh-cCcHHHHHHHHc
Confidence 588888887766665544 556666666654
No 202
>PF14337 DUF4393: Domain of unknown function (DUF4393)
Probab=32.70 E-value=1.4e+02 Score=19.85 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHh-----cCCCCCCcccHHHHHHHHHhcCc
Q 033455 49 SLKRNSLLLGLNDMMDDEIVCMLSE-----GDLDGDGALSQFEFCILMVRLSP 96 (119)
Q Consensus 49 el~~~l~~~~~~~~~~~e~~~l~~~-----~d~~~dg~I~~~eF~~~l~~~~~ 96 (119)
-...++..... ..++++++++|.. +|.+.+. .....|+.++..++|
T Consensus 18 i~~p~le~~~~-~~~~e~Lremfa~LLass~d~~~~~-~~hp~fv~Ii~qLsp 68 (186)
T PF14337_consen 18 IAGPALEAASY-EIDDEELREMFANLLASSMDKRKND-DVHPSFVEIIKQLSP 68 (186)
T ss_pred hhHHHHHhccC-cCCcHHHHHHHHHHHHHHhCcCccc-cccHHHHHHHHhCCH
Confidence 34455666666 5677777776653 3433332 233346666666555
No 203
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=32.64 E-value=1.2e+02 Score=18.57 Aligned_cols=57 Identities=26% Similarity=0.204 Sum_probs=36.3
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHH---HHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEI---VCMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~---~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
....+.+++..++..++. +.. +-+ ...++....+. ..++-++.+.+|.. .|.+++.|
T Consensus 34 ~~~~~~~el~~~~~~~~~-~~~-~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~-~p~LikRP 93 (115)
T cd03032 34 KQPLTKEELKEILSLTEN-GVE-DIISTRSKAFKNLNIDI-DELSLSELIRLISE-HPSLLRRP 93 (115)
T ss_pred CCcchHHHHHHHHHHhcC-CHH-HHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHh-ChhheeCC
Confidence 456778899999988764 311 111 12344544433 45888999998875 67777764
No 204
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=32.46 E-value=1.2e+02 Score=18.54 Aligned_cols=57 Identities=26% Similarity=0.162 Sum_probs=36.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHH---HHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEIV---CMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~~---~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
.-.++.+++..++..++. +..+ -+. ..++....+. ..++-++...+|.. .|.+++.|
T Consensus 33 ~~~~t~~el~~~l~~~~~-~~~~-lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~-~P~LikRP 92 (112)
T cd03034 33 KTPPTAAELRELLAKLGI-SPRD-LLRTKEAPYKELGLAD-PELSDEELIDAMAA-HPILIERP 92 (112)
T ss_pred cCCcCHHHHHHHHHHcCC-CHHH-HHhcCCchHHHcCCCc-cCCCHHHHHHHHHh-CcCcccCC
Confidence 456889999999988875 3211 111 1234444332 46888999999876 67787754
No 205
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=32.46 E-value=1.2e+02 Score=18.50 Aligned_cols=57 Identities=21% Similarity=0.048 Sum_probs=35.2
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHH---HHHHHhcCCCCC-CcccHHHHHHHHHhcCcCccCCc
Q 033455 43 GLITFESLKRNSLLLGLNDMMDDEI---VCMLSEGDLDGD-GALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 43 G~I~~~el~~~l~~~~~~~~~~~e~---~~l~~~~d~~~d-g~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
...+.+++..++...+. +... -+ ...++....+.. ..++-++.+.+|.. .|.+++.|
T Consensus 34 ~~~~~~el~~~~~~~~~-~~~~-l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~-~p~LikRP 94 (111)
T cd03036 34 EPPSKEELKKWLEKSGL-PLKK-FFNTSGKSYRELGLKDKLPSLSEEEALELLSS-DGMLIKRP 94 (111)
T ss_pred CcccHHHHHHHHHHcCC-CHHH-HHhcCCchHHhCCcccccccCCHHHHHHHHHh-CcCeeeCC
Confidence 46778889998888764 3211 11 124555554422 24678889988875 67787754
No 206
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=32.28 E-value=1.3e+02 Score=18.77 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=42.3
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033455 32 YGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 32 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
.+|-+.-..++..+|.+++..++...|. ......+..+++.+. | .+..+++.....
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGv-eVe~~~~~lf~~~L~----G-Kdi~eLIa~g~~ 60 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGV-EVDDEKLNKVISELE----G-KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCC-CccHHHHHHHHHHHc----C-CCHHHHHHHhHh
Confidence 4555666677889999999999999998 888887877777664 2 566777765443
No 207
>COG5562 Phage envelope protein [General function prediction only]
Probab=30.81 E-value=39 Score=22.04 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.2
Q ss_pred HhcCCCCCCcccHHHHHHHHHh
Q 033455 72 SEGDLDGDGALSQFEFCILMVR 93 (119)
Q Consensus 72 ~~~d~~~dg~I~~~eF~~~l~~ 93 (119)
.....+..|..+|+||+..+..
T Consensus 79 ~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHhcCCccHHHHHHHHHh
Confidence 3444566899999999999875
No 208
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=30.63 E-value=78 Score=18.48 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=15.4
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033455 40 GEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 40 ~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d 75 (119)
++.-++..+++..+-..+ +.+.+.+++++..++
T Consensus 39 ~~~y~~~~~~~~~~a~~~---~~~~~~v~~II~~~~ 71 (87)
T PF14297_consen 39 QGGYYLWWDKLFLIARKL---GVSEEYVEEIINEYG 71 (87)
T ss_pred CCCeEeeHHHHHHHHHHH---CcCHHHHHHHHHHhC
Confidence 333345555533222222 355666666655443
No 209
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=29.90 E-value=89 Score=18.58 Aligned_cols=55 Identities=11% Similarity=-0.019 Sum_probs=35.6
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCc
Q 033455 41 EKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGL 98 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~ 98 (119)
+.|.++.++...+...... .........++..+... |.=.|.-|+..+....|.+
T Consensus 27 q~~VLt~~d~EeI~~~~t~-~~r~~ka~~LLdiL~~r--G~~Af~~F~~aL~~~yp~L 81 (86)
T cd08785 27 QCKVLDEQDEEEVLSSPRL-PIRANRTGRLLDILATR--GKRGYVAFLESLEFYYPEL 81 (86)
T ss_pred hcCCCCHHHHHHHhCCCcc-ccHHHHHHHHHHHHHhc--CcchHHHHHHHHHHhCHHH
Confidence 4678888887777654332 22446677777766644 5557888888886555543
No 210
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=29.31 E-value=1e+02 Score=18.18 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=20.2
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 033455 44 LITFESLKRNSLLLGLNDMMDDEIVCMLSE 73 (119)
Q Consensus 44 ~I~~~el~~~l~~~~~~~~~~~e~~~l~~~ 73 (119)
.|+.++++.+...... .+++++++.+.+.
T Consensus 2 ~i~~e~i~~la~La~l-~l~~ee~~~~~~~ 30 (95)
T PRK00034 2 AITREEVKHLAKLARL-ELSEEELEKFAGQ 30 (95)
T ss_pred CCCHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 3677788877776676 7888777665443
No 211
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=28.51 E-value=1.2e+02 Score=18.89 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033455 61 DMMDDEIVCMLSEGDLDGDGALSQFEFCILM 91 (119)
Q Consensus 61 ~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l 91 (119)
+-+.+|++.++.... ..++=++.-.++
T Consensus 78 P~~~dElrai~~~~~----~~~~~e~l~~IL 104 (112)
T PRK14981 78 PETRDELRAIFAKER----YTLSPEELDEIL 104 (112)
T ss_pred CCCHHHHHHHHHHhc----cCCCHHHHHHHH
Confidence 355666777766542 334445444443
No 212
>PRK10853 putative reductase; Provisional
Probab=28.41 E-value=72 Score=19.97 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=30.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHH---HHHHHhcCCCCCCcc-cHHHHHHHHHhcCcCccCCcc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEI---VCMLSEGDLDGDGAL-SQFEFCILMVRLSPGLMEGSP 103 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~---~~l~~~~d~~~dg~I-~~~eF~~~l~~~~~~~~~~~~ 103 (119)
+..++.+++..++...|. . . -+ ...++..+.+....+ +-++.+.+|.. .|.+++.|-
T Consensus 34 k~p~s~~eL~~~l~~~g~-~--~-l~n~~~~~~r~L~~~~k~~~~~~~e~~~ll~~-~P~LikRPI 94 (118)
T PRK10853 34 VDGLDSELLQGFIDELGW-E--A-LLNTRGTTWRKLDETQRNAITDAASAAALMLE-QPAIIKRPL 94 (118)
T ss_pred cCCcCHHHHHHHHHHcCH-H--H-HHhcCCchHHhCCHhHhhcCCCHHHHHHHHHh-CcCeeeccE
Confidence 455778888888876653 1 0 01 012333332211224 45778888775 677777643
No 213
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=27.93 E-value=1.1e+02 Score=20.13 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-----CCCcccHHHHHHHHHhc
Q 033455 45 ITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLD-----GDGALSQFEFCILMVRL 94 (119)
Q Consensus 45 I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~-----~dg~I~~~eF~~~l~~~ 94 (119)
.|+++++.+...+.. .++++|++.+++.++.- .+..|+...-..++...
T Consensus 27 WT~eDV~~~a~gme~-~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~~ 80 (139)
T PF07128_consen 27 WTREDVRALADGMEY-NLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIREV 80 (139)
T ss_pred ecHHHHHHHHhcCCC-CCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHHH
Confidence 357888888777777 89999999998877652 22347776555566543
No 214
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=27.79 E-value=80 Score=18.89 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=31.4
Q ss_pred HHHHhhhcCCCCCccc-----HHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033455 31 CYGFQRLMDGEKGLIT-----FESLKRNSLLLGLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 31 ~~~F~~~D~~~~G~I~-----~~el~~~l~~~~~~~~~~~e~~~l~~~~d 75 (119)
+-.|.+-||+....|- .+.|+..+..+-....+.++++..+..++
T Consensus 26 ~gGyEIVDK~~~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdfL~~y~ 75 (85)
T PF12091_consen 26 RGGYEIVDKNARREIFIDGSWAEMFREDVQALIASEPTQEEVDDFLGGYD 75 (85)
T ss_pred cCCcEEeecCCCceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4568889998866554 34577777766443688889998887654
No 215
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=27.76 E-value=1.4e+02 Score=17.82 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 43 GLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 43 G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
-.|.=.+|+..+...-. -.+..+...+=..+|.-+++.||--||-...+
T Consensus 21 ~IVPW~~F~~~L~~~h~-~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHP-ISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcC-CCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 55777778887777643 33445555666667777888888877765543
No 216
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=27.29 E-value=85 Score=19.19 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033455 45 ITFESLKRNSLLLGLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 45 I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d 75 (119)
|...++.-++.-+.. .++++|+.++...+.
T Consensus 20 vP~~Dy~PLlALL~r-~Ltd~ev~~Va~~L~ 49 (96)
T PF11829_consen 20 VPPTDYVPLLALLRR-RLTDDEVAEVAAELA 49 (96)
T ss_dssp B-HHHHHHHHHHHTT-TS-HHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcc-cCCHHHHHHHHHHHH
Confidence 344455555666666 777777777666553
No 217
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=26.62 E-value=1.2e+02 Score=16.51 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033455 27 ISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 27 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d 75 (119)
+.-++.+|.+.. +.+.++..++.+.| +.+...+.++++.+.
T Consensus 7 e~YL~~Iy~l~~--~~~~v~~~~iA~~L------~vs~~tvt~ml~~L~ 47 (60)
T PF01325_consen 7 EDYLKAIYELSE--EGGPVRTKDIAERL------GVSPPTVTEMLKRLA 47 (60)
T ss_dssp HHHHHHHHHHHH--CTSSBBHHHHHHHH------TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCccHHHHHHHH------CCChHHHHHHHHHHH
Confidence 445777788776 77889999988877 677777777877665
No 218
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=26.41 E-value=1.5e+02 Score=17.70 Aligned_cols=33 Identities=12% Similarity=-0.015 Sum_probs=23.0
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 033455 43 GLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDL 76 (119)
Q Consensus 43 G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~ 76 (119)
..||.+||.......+. +++..+.+.++..+-.
T Consensus 13 n~iT~~eLlkyskqy~i-~it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNI-SITKKQAEQIANILRG 45 (85)
T ss_pred hcCCHHHHHHHHHHhCC-CCCHHHHHHHHHHHhc
Confidence 45677777777777777 7777777777665543
No 219
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=26.30 E-value=1.3e+02 Score=20.18 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=20.7
Q ss_pred CCCCcccHHHHHHHHHhcCcCccCCcccccccChhhhhhh
Q 033455 77 DGDGALSQFEFCILMVRLSPGLMEGSPQSMEGSPESMVED 116 (119)
Q Consensus 77 ~~dg~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (119)
..||.| |+.+...... .|.-...++.|.++-+.|.-++
T Consensus 149 ~~DG~v-Ye~l~~~a~~-~~~n~~~~~~~~~~~lkp~l~~ 186 (187)
T PF01756_consen 149 RYDGDV-YEALFEWAKK-SPLNQTEVPPWWEEYLKPLLKR 186 (187)
T ss_dssp -TT--H-HHHHHHHHHH-SGGGCSSS-TTHHHHTHHHHCT
T ss_pred cccchH-HHHHHHHHHH-CCCCCCCCCchHHHHHHHHHcC
Confidence 356766 6667666654 3444446677777767776543
No 220
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=26.15 E-value=37 Score=20.28 Aligned_cols=8 Identities=25% Similarity=-0.155 Sum_probs=3.3
Q ss_pred CCCccHHH
Q 033455 5 LFDHDFED 12 (119)
Q Consensus 5 ~g~i~~~e 12 (119)
+|.++-+|
T Consensus 16 DG~v~~~E 23 (111)
T cd07176 16 DGDIDDAE 23 (111)
T ss_pred ccCCCHHH
Confidence 34444444
No 221
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=25.71 E-value=1.1e+02 Score=15.71 Aligned_cols=38 Identities=16% Similarity=-0.008 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 033455 48 ESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCIL 90 (119)
Q Consensus 48 ~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~ 90 (119)
+|...+|..+|+ ++.++...++.... ...++-++.++.
T Consensus 4 ~d~~~AL~~LGy---~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 4 EDALEALISLGY---SKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHTTS----HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 566777777765 66677777777653 233556665553
No 222
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=25.65 E-value=3.1e+02 Score=24.01 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc--CcCccC
Q 033455 49 SLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL--SPGLME 100 (119)
Q Consensus 49 el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~--~~~~~~ 100 (119)
.|..++..+.. ..+++++|..+..++...++.++|+..+... .|.+++
T Consensus 209 ~f~~~l~klcp----R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNe 258 (1189)
T KOG1265|consen 209 KFYRLLNKLCP----RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNE 258 (1189)
T ss_pred HHHHHHHhcCC----chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhh
Confidence 35555555443 2479999999998888899999999998653 566666
No 223
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=25.62 E-value=74 Score=21.14 Aligned_cols=39 Identities=18% Similarity=0.045 Sum_probs=28.2
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 033455 33 GFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLS 72 (119)
Q Consensus 33 ~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~ 72 (119)
+=.+.+++.+..|.++.+..+|..+|+ +-=-+++..++.
T Consensus 55 Aneic~~e~KKTIa~EHV~KALe~LgF-~eYiee~~~vl~ 93 (156)
T KOG0871|consen 55 ANEICNKEAKKTIAPEHVIKALENLGF-GEYIEEAEEVLE 93 (156)
T ss_pred HHHHHhHHhcccCCHHHHHHHHHHcch-HHHHHHHHHHHH
Confidence 445678889999999999999999998 522234444443
No 224
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=25.61 E-value=2.4e+02 Score=20.00 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=36.1
Q ss_pred CCCCCCccHHHHHHHHHHhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 033455 2 ATLLFDHDFEDYFPSMIKRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL 57 (119)
Q Consensus 2 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 57 (119)
.....+|++.+-...+...++.. .....+..+..|=. |+++..||...+..+
T Consensus 3 ~~~~~Ridl~~lk~~l~~~LG~~-~~~~Y~~~l~~fl~---~klsk~Efd~~~~~~ 54 (252)
T PF12767_consen 3 QQQNSRIDLEELKSQLQKRLGPD-RWKKYFQSLKRFLS---GKLSKEEFDKECRRI 54 (252)
T ss_pred CCcccccCHHHHHHHHHHHHChH-HHHHHHHHHHHHHH---hccCHHHHHHHHHHH
Confidence 44577899999999988888732 22344455554433 899999998777664
No 225
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=25.28 E-value=43 Score=23.56 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHhhhcC-CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 33 GFQRLMD-GEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 33 ~F~~~D~-~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
.|..+|. --+|+++..||.-+- +--. ++ +.=+...|..+|.|+||.|+..|...++.
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~-ap~i-pm-e~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLR-APLI-PM-EHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeccccCCCcccccccccccccc-CCcc-cH-HhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 4555664 458999988865432 1111 11 22267889999999999999999887763
No 226
>PRK08181 transposase; Validated
Probab=23.87 E-value=2e+02 Score=20.77 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=22.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMV 92 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~ 92 (119)
++.|+.+.+...+..+.. +--.+.+....... ..+..+|.||...+.
T Consensus 4 ~~~~~~~~l~~~l~~LkL-~~~~~~~~~~~~~a---~~~~~~~~e~L~~ll 50 (269)
T PRK08181 4 TNVIDEARLGLLLNELRL-PTIKTLWPQFAEQA---DKEGWPAARFLAAIA 50 (269)
T ss_pred CCcccHHHHHHHHHHcCc-hHHHHHHHHHHHHH---hhcCCCHHHHHHHHH
Confidence 345555556666666544 22122233333222 224466666666554
No 227
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=23.64 E-value=1.5e+02 Score=18.13 Aligned_cols=58 Identities=19% Similarity=-0.007 Sum_probs=35.3
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHH---HHHHHhcCCCC-CCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEI---VCMLSEGDLDG-DGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~---~~l~~~~d~~~-dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
....+.+++..++..+|. +..+ -+ ...++...... ...++-++...+|.. .|.+++.|
T Consensus 33 ~~~~~~~el~~l~~~~~~-~~~~-lin~~~~~~k~l~~~~~~~~ls~~e~~~~i~~-~p~LikRP 94 (117)
T TIGR01617 33 EDGPTREELLDILSLLED-GIDP-LLNTRGQSYRALNTSNTFLDLSDKEALELLAE-DPALLRRP 94 (117)
T ss_pred CChhhHHHHHHHHHHcCC-CHHH-heeCCCcchhhCCchhhcccCCHHHHHHHHHh-CcceEecC
Confidence 456778889988888774 2211 00 11244444321 245888999999876 67777754
No 228
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=23.50 E-value=1.7e+02 Score=17.31 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 033455 41 EKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRL 94 (119)
Q Consensus 41 ~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~ 94 (119)
..|.++.++...+-. . +...++.+.++..... .|.=.|.-|++.+...
T Consensus 25 ~~gvlt~~~~e~I~~---~-~t~~~qa~~Lld~L~t--rG~~Af~~F~~aL~~~ 72 (86)
T cd08323 25 SDGVLTLDEEEKVKS---K-ATQKEKAVMLINMILT--KDNHAYVSFYNALLHE 72 (86)
T ss_pred hcCCCCHHHHHHHHc---C-CChHHHHHHHHHHHHh--cCHHHHHHHHHHHHhc
Confidence 467888888766542 3 5567778888877664 4667899999999753
No 229
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=23.46 E-value=1.7e+02 Score=17.36 Aligned_cols=58 Identities=29% Similarity=0.205 Sum_probs=37.0
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHH---HHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCc
Q 033455 42 KGLITFESLKRNSLLLGLNDMMDDEIV---CMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGS 102 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~~~~~~~~~e~~---~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~ 102 (119)
....+.+++..++..++. +.. +-+. ..++..+......++-++...+|.. .|.++..|
T Consensus 33 ~~~~~~~~l~~~~~~~~~-~~~-~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~-~p~LikRP 93 (105)
T cd02977 33 KEPPTKEELKELLAKLGL-GVE-DLFNTRGTPYRKLGLADKDELSDEEALELMAE-HPKLIKRP 93 (105)
T ss_pred cCCCCHHHHHHHHHhcCC-CHH-HHHhcCCchHHHcCCccccCCCHHHHHHHHHh-CcCeeeCC
Confidence 456778889888877764 221 1111 2344444433457899999999986 68887764
No 230
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=23.37 E-value=95 Score=23.50 Aligned_cols=72 Identities=14% Similarity=0.020 Sum_probs=42.1
Q ss_pred HHHHHHHhhh--cCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccC
Q 033455 28 SELCYGFQRL--MDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPGLME 100 (119)
Q Consensus 28 ~~~~~~F~~~--D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~ 100 (119)
+++..+...+ |.|..-++--+++......+.. ..-..-++-+...|...=+|.+=|.|...-+++.+|.+.+
T Consensus 41 ~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~-~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae 114 (357)
T PLN02508 41 AEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQG-PLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAE 114 (357)
T ss_pred HHHHHHHHHHHhCccccccccChhhccchhhCCH-HHHHHHHHHHHhhhhhhcccchHHHHHHHhcccCChHHHH
Confidence 3444444433 6666666666676654444432 2222334445566666667888888888877766665554
No 231
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=23.29 E-value=2e+02 Score=18.75 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=15.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHH
Q 033455 50 LKRNSLLLGLNDMMDDEIVCML 71 (119)
Q Consensus 50 l~~~l~~~~~~~~~~~e~~~l~ 71 (119)
+..-..++|. .++++|+..++
T Consensus 95 l~~e~eklGi-~Vs~~El~d~l 115 (145)
T PF13623_consen 95 LEQEFEKLGI-TVSDDELQDML 115 (145)
T ss_pred HHHHHHHhCC-ccCHHHHHHHH
Confidence 4455566788 88888887777
No 232
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=23.27 E-value=1.4e+02 Score=16.37 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHhcCCC
Q 033455 61 DMMDDEIVCMLSEGDLD 77 (119)
Q Consensus 61 ~~~~~e~~~l~~~~d~~ 77 (119)
+++.+++.+-.+.+..|
T Consensus 20 GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 20 GLSSEEVEERRKKYGPN 36 (69)
T ss_dssp BBTHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHhcccc
Confidence 45555555544444433
No 233
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=22.99 E-value=1.5e+02 Score=16.43 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=20.2
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHH
Q 033455 31 CYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIV 68 (119)
Q Consensus 31 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~ 68 (119)
..||.+| .+..|.|...++...| +++...|.
T Consensus 10 dkA~e~y-~~~~g~i~lkdIA~~L------gvs~~tIr 40 (60)
T PF10668_consen 10 DKAFEIY-KESNGKIKLKDIAEKL------GVSESTIR 40 (60)
T ss_pred HHHHHHH-HHhCCCccHHHHHHHH------CCCHHHHH
Confidence 4566666 4677889888777665 45555554
No 234
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=22.89 E-value=1.6e+02 Score=16.61 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=29.6
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCcccccccChhhhh
Q 033455 69 CMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGSPQSMEGSPESMV 114 (119)
Q Consensus 69 ~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 114 (119)
.+...+..-..-+|.|.++...+..+ +++-+.|..+-++.+++=|
T Consensus 11 ~L~e~~pd~dp~~vrFtdL~~wV~~L-~~FdDdp~~~~EkiLEaIQ 55 (63)
T TIGR03412 11 ALAEAHPDVDPKTVRFTDLHQWVLEL-PGFDDDPKRCNEKILEAIQ 55 (63)
T ss_pred HHHHHCCCCCcceeeHHHHHHHHHhC-cCcCCCcccccHHHHHHHH
Confidence 34444443334579999999988864 6777777777666666533
No 235
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=22.83 E-value=1.9e+02 Score=19.35 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcC
Q 033455 61 DMMDDEIVCMLSEGDLDGDGALSQFEFCILMVRLSPG 97 (119)
Q Consensus 61 ~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l~~~~~~ 97 (119)
++.-.++.+++..++....|.+--.+|+..+..+.|.
T Consensus 106 KlrVk~LK~iL~~~g~~C~GC~EK~dfv~ri~el~~k 142 (154)
T PF10208_consen 106 KLRVKQLKKILDDWGEDCKGCLEKSDFVRRIEELKPK 142 (154)
T ss_dssp TTCHHHHHHHHHHHTTT-SS-CSHHHHHHHCHCCCCC
T ss_pred hCcHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhh
Confidence 5666788899999999999999999999998876664
No 236
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=22.50 E-value=1.7e+02 Score=16.82 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=22.8
Q ss_pred HhcCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc-CCCCCCHHHHHHH
Q 033455 19 KRLGAEGFISELCYGFQRLMDGEKGLITFESLKRNSLLL-GLNDMMDDEIVCM 70 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-~~~~~~~~e~~~l 70 (119)
..+......+.+++-|... =+.|++.|+..+=+.+ .. +++.++++++
T Consensus 7 ~~Lh~G~~~e~vk~~F~~~----~~~Vs~~EI~~~Eq~Li~e-G~~~eeiq~L 54 (71)
T PF04282_consen 7 KRLHEGEDPEEVKEEFKKL----FSDVSASEISAAEQELIQE-GMPVEEIQKL 54 (71)
T ss_pred HHHhCCCCHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 3444444555666666521 1345555554443332 23 5666666554
No 237
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.16 E-value=2e+02 Score=18.16 Aligned_cols=15 Identities=7% Similarity=-0.221 Sum_probs=8.6
Q ss_pred CCccHHHHHHHHHHh
Q 033455 6 FDHDFEDYFPSMIKR 20 (119)
Q Consensus 6 g~i~~~eF~~~~~~~ 20 (119)
.+|++.+-..++...
T Consensus 11 ~yiti~Eak~il~~~ 25 (114)
T COG1460 11 KYITISEAKKILSKV 25 (114)
T ss_pred cCccHHHHHHHHHHh
Confidence 356666666665554
No 238
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=22.15 E-value=1e+02 Score=15.22 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHhcCCCCCCc
Q 033455 61 DMMDDEIVCMLSEGDLDGDGA 81 (119)
Q Consensus 61 ~~~~~e~~~l~~~~d~~~dg~ 81 (119)
..+.++++.++..+..+.+|.
T Consensus 12 ~cs~edL~~L~~~Lt~dkdG~ 32 (35)
T PF13099_consen 12 ECSNEDLKDLVDILTHDKDGK 32 (35)
T ss_pred HCCHHHHHHHHHHHhcCCCCC
Confidence 356666777766666666664
No 239
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=21.97 E-value=2.3e+02 Score=18.21 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHhcCCCCCC-cccHHHHHH
Q 033455 62 MMDDEIVCMLSEGDLDGDG-ALSQFEFCI 89 (119)
Q Consensus 62 ~~~~e~~~l~~~~d~~~dg-~I~~~eF~~ 89 (119)
++.++++++.+.+.....+ .++..|-+.
T Consensus 109 ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr 137 (141)
T PF12419_consen 109 LDPEELRRALAFLEKAPKGEKLTLAEALR 137 (141)
T ss_pred ECHHHHHHHHHHHHhccccCCCCHHHHHH
Confidence 3444555555544443322 255544433
No 240
>PF03963 FlgD: Flagellar hook capping protein - N-terminal region; InterPro: IPR005648 FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum []. It appears to act as a hook-capping protein to enable assembly of hook protein subunits [].
Probab=21.88 E-value=1.1e+02 Score=17.89 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=15.3
Q ss_pred CCCCccHHHHHHHHHHhcCC
Q 033455 4 LLFDHDFEDYFPSMIKRLGA 23 (119)
Q Consensus 4 ~~g~i~~~eF~~~~~~~~~~ 23 (119)
..+.++.++|++++...+..
T Consensus 27 ~~~~l~~d~FLkLLvaQLqn 46 (81)
T PF03963_consen 27 SNSSLDQDDFLKLLVAQLQN 46 (81)
T ss_pred CcccccHHHHHHHHHHHHhc
Confidence 35568999999998876654
No 241
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=21.77 E-value=17 Score=24.85 Aligned_cols=69 Identities=12% Similarity=0.021 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC---CCCcccHHHHHHHHHhcCc
Q 033455 27 ISELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLD---GDGALSQFEFCILMVRLSP 96 (119)
Q Consensus 27 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~---~dg~I~~~eF~~~l~~~~~ 96 (119)
.+.++++|.-||.+.--.++.+++..++..-+. --....++.++.+...= ....-||.+|+.-.....|
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~i-IRnr~KI~Avi~NA~~~l~i~~e~gsF~~ylw~f~~~~~ 119 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGI-IRNRRKIRAVINNARAILKIQEEFGSFSDYLWSFVNGKP 119 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTS-S--HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHCTTTS-
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcch-hhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCcC
Confidence 457889999999988888888888888877655 44556666655432110 0112477777776655433
No 242
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=21.61 E-value=1.1e+02 Score=18.80 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=27.0
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033455 29 ELCYGFQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILM 91 (119)
Q Consensus 29 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l 91 (119)
.+..+...+..-+ ++..+...++..+ +-+.+++..++..++ .+++-++.-.++
T Consensus 58 ~~~~l~~~L~~~~---L~~~E~~qi~Nl~---P~~~~El~~ii~~~~----~r~~ee~l~~iL 110 (117)
T PF03874_consen 58 SIKELREELKKFG---LTEFEILQIINLR---PTTAVELRAIIESLE----SRFSEEDLEEIL 110 (117)
T ss_dssp HHHHHHHHHTTST---S-HHHHHHHHHH-----SSHHHHHHHSTTGT----TTSTHHHHHHHH
T ss_pred HHHHHHHHHhccc---CCHHHHHHHhcCC---CCCHHHHHHHHHHhc----cCCCHHHHHHHH
Confidence 3444444443222 6766666655443 456666776666555 356656555544
No 243
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=21.60 E-value=1e+02 Score=17.08 Aligned_cols=42 Identities=2% Similarity=-0.119 Sum_probs=24.2
Q ss_pred HhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033455 34 FQRLMDGEKGLITFESLKRNSLLLGLNDMMDDEIVCMLSEGD 75 (119)
Q Consensus 34 F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~e~~~l~~~~d 75 (119)
|..+-....|.+++.+...+-..+...+++.+-+..++..+-
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~ 43 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYAL 43 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455666667888877766655555422455555666666655
No 244
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.99 E-value=1e+02 Score=20.52 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHhcCC
Q 033455 9 DFEDYFPSMIKRLGA 23 (119)
Q Consensus 9 ~~~eF~~~~~~~~~~ 23 (119)
+=+||++.+...+..
T Consensus 2 ~k~efL~~L~~~L~~ 16 (181)
T PF08006_consen 2 NKNEFLNELEKYLKK 16 (181)
T ss_pred CHHHHHHHHHHHHHc
Confidence 346677666666653
No 245
>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.
Probab=20.83 E-value=2.7e+02 Score=19.18 Aligned_cols=43 Identities=9% Similarity=0.025 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHhc-----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033455 42 KGLITFESLKRNSLLL-----GLNDMMDDEIVCMLSEGDLDGDGALSQFEFCILM 91 (119)
Q Consensus 42 ~G~I~~~el~~~l~~~-----~~~~~~~~e~~~l~~~~d~~~dg~I~~~eF~~~l 91 (119)
..+-....+..|+..+ +. .++++++++++-.++ -.|.+|...+
T Consensus 140 ~dfe~r~kl~~Wl~~Ln~m~asd-eL~e~q~rqllfDle------~aY~~F~~~L 187 (188)
T PF03997_consen 140 PDFEGRSKLVEWLIKLNGMKASD-ELSEEQARQLLFDLE------SAYNAFYRSL 187 (188)
T ss_dssp TT-CCHHHHHHHHHHHHTS-TT--B--HHHHHHHHHHHH------HHHHHHHHCH
T ss_pred CCCccHHHHHHHHHHHhCCCccc-ccCHHHHHHHHHHHH------HHHHHHHHHh
Confidence 3444566677776654 34 788999999887666 5677776543
No 246
>PF04384 Fe-S_assembly: Iron-sulphur cluster assembly; InterPro: IPR007479 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents IscX proteins (also known as hypothetical protein YfhJ) that are part of the ISC system. IscX is active as a monomer. The structure of YfhJ is an orthogonal alpha-bundle []. YfhJ is a small acidic protein that binds IscS, and contains a modified winged helix motif that is usually found in DNA-binding proteins []. YfhJ/IscX can bind Fe, and may function as an Fe donor in the assembly of FeS clusters ; GO: 0016226 iron-sulfur cluster assembly; PDB: 2BZT_A 1UJ8_A.
Probab=20.65 E-value=1.8e+02 Score=16.42 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=24.8
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCcccccccChhhhh
Q 033455 69 CMLSEGDLDGDGALSQFEFCILMVRLSPGLMEGSPQSMEGSPESMV 114 (119)
Q Consensus 69 ~l~~~~d~~~dg~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 114 (119)
.+...+..-..-+|+|.++.+.+..+ +++-..|..+-++.+++=|
T Consensus 12 ~L~e~~pd~DP~~vrFtdL~~wv~~L-~~F~Ddp~~~~E~iLEaIq 56 (64)
T PF04384_consen 12 ELYEKYPDVDPLTVRFTDLHEWVLEL-PDFDDDPKRCNEKILEAIQ 56 (64)
T ss_dssp HHHHHSTTS-CCC--HHHHHHHHHCS-TTB-S-CCG--HHHHHHHH
T ss_pred HHHHHCCCCCcCeecHHHHHHHHHhC-cCcCCCccccCHHHHHHHH
Confidence 34444443334569999999999875 7888887777666666433
No 247
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=20.64 E-value=2.2e+02 Score=22.76 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=35.4
Q ss_pred ccHHHHHHHHH-HhcCCcc-hHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC
Q 033455 8 HDFEDYFPSMI-KRLGAEG-FISELCYGFQRLMDGEKGLITFESLKRNSLLLGL 59 (119)
Q Consensus 8 i~~~eF~~~~~-~~~~~~~-~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 59 (119)
.+..+|=.++- +.+.-.+ ...-+.-+|++.|.++==.|+..+|+.++..++.
T Consensus 106 aTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e 159 (502)
T PF05872_consen 106 ATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSE 159 (502)
T ss_pred eeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHh
Confidence 45666666444 4443222 2334667899999999889999999988886643
No 248
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=20.33 E-value=1.1e+02 Score=16.90 Aligned_cols=14 Identities=21% Similarity=-0.009 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHhcC
Q 033455 62 MMDDEIVCMLSEGD 75 (119)
Q Consensus 62 ~~~~e~~~l~~~~d 75 (119)
.+.+-+..++..+-
T Consensus 30 ~~~evI~~ai~~a~ 43 (73)
T TIGR01446 30 NSPELIKEALKEAV 43 (73)
T ss_pred CCHHHHHHHHHHHH
Confidence 33444555555443
Done!