Query 033456
Match_columns 119
No_of_seqs 102 out of 329
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4267 Predicted membrane pro 100.0 1.5E-35 3.3E-40 208.7 10.1 108 1-115 1-110 (110)
2 PF03647 Tmemb_14: Transmembra 100.0 1.2E-30 2.7E-35 180.3 2.8 96 4-105 1-96 (96)
3 COG5548 Small integral membran 99.9 3E-22 6.6E-27 138.4 6.3 92 6-103 6-97 (105)
4 PF11286 DUF3087: Protein of u 75.8 15 0.00032 28.0 6.6 43 55-109 45-87 (165)
5 PRK01030 tetrahydromethanopter 71.5 41 0.00088 27.4 8.5 90 29-119 159-263 (264)
6 PF10315 DUF2416: Protein of u 68.1 6.6 0.00014 27.9 3.0 68 33-106 36-106 (108)
7 PF01032 FecCD: FecCD transpor 67.0 22 0.00048 28.9 6.3 80 25-108 40-121 (311)
8 PF12751 Vac7: Vacuolar segreg 61.9 5.8 0.00012 33.9 2.0 26 4-29 304-329 (387)
9 COG3859 Predicted membrane pro 60.9 62 0.0013 25.0 7.3 81 23-110 49-132 (185)
10 COG4872 Predicted membrane pro 56.0 69 0.0015 27.4 7.4 68 27-98 47-115 (394)
11 PF09586 YfhO: Bacterial membr 52.1 1.6E+02 0.0035 26.6 9.6 59 32-97 121-179 (843)
12 PRK03784 vtamin B12-transporte 52.1 1.4E+02 0.003 24.8 10.9 51 25-75 56-108 (331)
13 PRK10577 iron-hydroxamate tran 50.8 1.9E+02 0.0041 26.1 10.5 48 27-74 62-111 (668)
14 PF09990 DUF2231: Predicted me 49.4 77 0.0017 21.2 8.6 67 29-95 7-81 (104)
15 PRK10441 iron-enterobactin tra 49.0 1.5E+02 0.0033 24.5 10.0 50 25-74 58-109 (335)
16 PF02656 DUF202: Domain of unk 46.2 72 0.0016 19.9 6.2 19 68-86 55-73 (73)
17 PRK11228 fecC iron-dicitrate t 45.3 1.7E+02 0.0037 23.9 10.6 45 28-72 52-98 (323)
18 PRK13499 rhamnose-proton sympo 44.1 1.9E+02 0.0042 24.2 11.2 67 13-81 55-122 (345)
19 PF04391 DUF533: Protein of un 43.9 57 0.0012 25.0 4.8 40 16-55 12-55 (188)
20 PRK10440 iron-enterobactin tra 42.8 1.9E+02 0.0042 23.9 9.5 76 28-108 60-137 (330)
21 PF13572 DUF4134: Domain of un 41.9 1.2E+02 0.0025 21.0 6.4 37 20-59 37-73 (98)
22 PF04156 IncA: IncA protein; 41.2 75 0.0016 23.3 5.0 20 8-27 12-31 (191)
23 PF01810 LysE: LysE type trans 41.2 1.4E+02 0.0029 21.6 7.9 33 79-112 50-82 (191)
24 PF02439 Adeno_E3_CR2: Adenovi 41.0 52 0.0011 19.2 3.2 24 25-48 2-25 (38)
25 TIGR03869 F420-0_ABCperm propo 39.8 2.1E+02 0.0047 23.5 10.4 49 26-74 52-102 (325)
26 COG5336 Uncharacterized protei 39.1 1.4E+02 0.0029 21.5 5.7 9 31-39 52-60 (116)
27 PF06166 DUF979: Protein of un 38.2 1.3E+02 0.0028 25.1 6.3 66 36-112 7-73 (308)
28 PTZ00233 variable surface prot 37.7 23 0.0005 31.3 2.0 32 86-117 439-470 (509)
29 PRK10577 iron-hydroxamate tran 37.3 3.2E+02 0.0069 24.7 9.8 33 23-55 393-425 (668)
30 TIGR00980 3a0801so1tim17 mitoc 36.8 1.9E+02 0.004 22.0 9.6 18 7-24 18-35 (170)
31 PF06570 DUF1129: Protein of u 36.7 1.8E+02 0.004 21.9 11.0 19 9-27 89-107 (206)
32 PRK09777 fecD iron-dicitrate t 36.2 2.4E+02 0.0053 23.1 9.9 48 28-75 52-101 (318)
33 PF05283 MGC-24: Multi-glycosy 36.1 43 0.00093 25.8 3.0 26 28-53 160-185 (186)
34 PF07214 DUF1418: Protein of u 35.2 1.6E+02 0.0034 20.6 6.0 19 36-54 16-34 (96)
35 PRK03776 phosphoglycerol trans 34.8 2.3E+02 0.005 26.5 7.9 11 25-35 22-32 (762)
36 PRK09430 djlA Dna-J like membr 34.2 41 0.0009 26.8 2.8 27 14-41 6-32 (267)
37 PF07290 DUF1449: Protein of u 33.8 2.2E+02 0.0049 22.0 7.4 53 55-107 61-115 (202)
38 TIGR00145 FTR1 family protein. 32.4 2.7E+02 0.0059 22.6 8.5 67 12-78 18-92 (283)
39 COG4389 Site-specific recombin 32.1 3.9E+02 0.0084 24.2 9.8 95 7-119 559-669 (677)
40 PRK10209 acid-resistance membr 31.8 2.2E+02 0.0048 21.3 11.2 44 7-50 50-98 (190)
41 PF03239 FTR1: Iron permease F 31.6 2.7E+02 0.0058 22.5 7.2 27 13-40 151-177 (306)
42 PRK11285 araH L-arabinose tran 31.5 2.9E+02 0.0062 22.5 10.9 54 55-111 104-157 (333)
43 PRK03557 zinc transporter ZitB 30.6 2.3E+02 0.005 22.8 6.6 18 89-106 186-203 (312)
44 PRK11099 putative inner membra 30.6 3.4E+02 0.0075 23.2 8.5 68 30-101 220-295 (399)
45 PF05513 TraA: TraA; InterPro 30.3 74 0.0016 23.0 3.3 27 16-43 86-112 (119)
46 PF06168 DUF981: Protein of un 28.7 2.8E+02 0.006 21.4 7.4 25 84-108 95-119 (191)
47 PF04588 HIG_1_N: Hypoxia indu 28.7 86 0.0019 19.0 3.0 25 82-106 2-26 (54)
48 PF07290 DUF1449: Protein of u 28.5 2.8E+02 0.0061 21.5 6.9 37 16-52 51-87 (202)
49 TIGR01148 mtrC N5-methyltetrah 27.6 3.4E+02 0.0074 22.2 8.3 27 28-54 164-190 (265)
50 PRK13591 ubiA prenyltransferas 27.6 3.5E+02 0.0077 22.3 11.0 30 86-116 249-278 (307)
51 PF05283 MGC-24: Multi-glycosy 27.3 63 0.0014 24.9 2.7 22 88-109 164-185 (186)
52 PRK09699 D-allose transporter 26.8 3.4E+02 0.0074 21.9 9.7 45 65-112 98-142 (312)
53 PRK05771 V-type ATP synthase s 26.4 3.4E+02 0.0073 24.1 7.4 17 8-24 365-381 (646)
54 PF02417 Chromate_transp: Chro 25.5 2.7E+02 0.0058 20.2 9.3 84 16-102 61-151 (169)
55 PTZ00236 mitochondrial import 25.0 3.1E+02 0.0066 20.7 8.1 35 47-81 78-112 (164)
56 PF09323 DUF1980: Domain of un 23.5 3.1E+02 0.0067 20.3 6.6 27 59-85 32-58 (182)
57 COG0659 SUL1 Sulfate permease 22.6 4.9E+02 0.011 23.1 7.6 70 27-101 21-90 (554)
58 PF09925 DUF2157: Predicted me 22.1 2.9E+02 0.0064 19.5 8.7 55 36-93 38-96 (145)
59 PF11158 DUF2938: Protein of u 21.7 3.2E+02 0.0069 20.1 5.4 44 64-108 69-112 (150)
60 PHA03164 hypothetical protein; 21.6 1.3E+02 0.0029 20.3 3.0 18 60-77 60-77 (88)
61 PF03729 DUF308: Short repeat 21.5 1.9E+02 0.0041 17.1 7.6 35 11-46 3-37 (72)
62 PF02038 ATP1G1_PLM_MAT8: ATP1 20.3 1.5E+02 0.0033 18.2 2.9 18 32-49 16-33 (50)
63 COG3180 AbrB Putative ammonia 20.1 5.4E+02 0.012 21.8 7.3 83 9-100 192-279 (352)
No 1
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=208.68 Aligned_cols=108 Identities=51% Similarity=0.794 Sum_probs=99.0
Q ss_pred CccccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcC-chhHHHHHHHH-HHHHHHHHHHH
Q 033456 1 MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKK-NSYFAIVIETV-CAAVLTVVMAQ 78 (119)
Q Consensus 1 ~~Dfcl~~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~-~~~~~~~~~l~-~S~~L~~~m~~ 78 (119)
|||+|++++|+.|+++||+|||.|+||+|||++|+.+|++ ++|.+++.|+|++ +.. +++. +|++|+.+|+.
T Consensus 1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~----~~l~~~s~~L~gvmg~ 73 (110)
T KOG4267|consen 1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSL----VALGGTSAALLGVMGQ 73 (110)
T ss_pred CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCch----hHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999975 5677777888766 544 4455 79999999999
Q ss_pred HHHhhCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 033456 79 RYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIP 115 (119)
Q Consensus 79 R~~~t~K~mPaGl~~~ls~~~~~~y~~~~~~~~~~~~ 115 (119)
||.+|||+||+|+++.+|++|++||.|+..++.||+|
T Consensus 74 R~~~s~K~mPaglva~~s~~m~~~Y~y~~~~~~~~~~ 110 (110)
T KOG4267|consen 74 RFYRSRKIMPAGLVAGISLLMTCFYLYVVLRGGNPPP 110 (110)
T ss_pred hhhccCCccchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999987
No 2
>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised.; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.
Probab=99.96 E-value=1.2e-30 Score=180.25 Aligned_cols=96 Identities=50% Similarity=0.825 Sum_probs=86.5
Q ss_pred ccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033456 4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET 83 (119)
Q Consensus 4 fcl~~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t 83 (119)
||++++|++++.+||++||+|+||+|||++|+++|++++.+++++. +|+++++.+++.+|.+|+.+|++|+.||
T Consensus 1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~------~~~~~~~~~~l~~s~~L~~~m~~R~~~t 74 (96)
T PF03647_consen 1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL------TNQKWGSELALAISAVLAGVMGYRYIKT 74 (96)
T ss_dssp HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS-------STHHCCHHHHHHHHHHHHCCTSSS-SS
T ss_pred CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh------ccCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999999999999999999999999998864 3566778899999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHH
Q 033456 84 SKVMPAGIVAGISALMTGFYLY 105 (119)
Q Consensus 84 ~K~mPaGl~~~ls~~~~~~y~~ 105 (119)
+|+||+|+++++|++|+.+|.|
T Consensus 75 ~k~~Pagl~~~~s~~~~~~y~Y 96 (96)
T PF03647_consen 75 RKFMPAGLMALLSGAMLAFYYY 96 (96)
T ss_dssp SSSCCCHHHHHHHHHHHHHHC-
T ss_pred CCCccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999976
No 3
>COG5548 Small integral membrane protein [Function unknown]
Probab=99.86 E-value=3e-22 Score=138.38 Aligned_cols=92 Identities=34% Similarity=0.539 Sum_probs=82.0
Q ss_pred chHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 033456 6 FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSK 85 (119)
Q Consensus 6 l~~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t~K 85 (119)
-.+.++.|..+||+|||.||+|++||++|+.+|+.+.+++|+..| ++++++..++..|++|..+++.|+.||||
T Consensus 6 ~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~------g~~~Gl~~A~~~s~~Ll~~~~~R~~~sRK 79 (105)
T COG5548 6 AAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQ------GQTWGLILATVVSAALLVFFALRLVRSRK 79 (105)
T ss_pred HHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHc------CcccCeehHHHHHHHHHHhcchhccccCC
Confidence 468899999999999999999999999999999999999999765 55688889999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHH
Q 033456 86 VMPAGIVAGISALMTGFY 103 (119)
Q Consensus 86 ~mPaGl~~~ls~~~~~~y 103 (119)
++|++++++.+....-+|
T Consensus 80 pvP~~Lt~lgg~~s~y~y 97 (105)
T COG5548 80 PVPAGLTTLGGMLSLYVY 97 (105)
T ss_pred CcchHHHHHhhhhhhhhe
Confidence 999988877665554444
No 4
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=75.80 E-value=15 Score=27.98 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=29.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHhc
Q 033456 55 KKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIAT 109 (119)
Q Consensus 55 ~~~~~~~~~~~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~~~~~~y~~~~~~ 109 (119)
++++..+..++..+++++... ..|..|++.+|-. ++|+|++-.
T Consensus 45 ~~~nf~~NllGVil~~~~~~~-~l~~~k~~p~m~E-----------v~YvW~LKq 87 (165)
T PF11286_consen 45 SGGNFHWNLLGVILGLLLTSA-LLRQLKTHPFMTE-----------VYYVWQLKQ 87 (165)
T ss_pred CCCceeeeHHHHHHHHHHHHH-HHHHHccChHHHH-----------HHHHHHHHH
Confidence 445556666666666666554 5568899988877 678888654
No 5
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=71.52 E-value=41 Score=27.43 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=45.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhh--c--CchhHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHH
Q 033456 29 ASLAGGVGTGLLLVLAGYLSLKAFEK--K--KNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYL 104 (119)
Q Consensus 29 ~SLiaG~~~G~ll~~ag~~~~~~~~~--~--~~~~~~~~~~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~~~~~~y~ 104 (119)
++.++....+.++...+...++-++. | ++++=-+.+++.+..+-..+++.--......+++.+..++| +...+|.
T Consensus 159 ~~vi~~G~IAl~FI~~~mAIlHPFNACLGP~E~q~RTL~la~e~G~ls~ii~gi~s~~~~~~~~~~i~iivg-~i~W~~~ 237 (264)
T PRK01030 159 TSVIATGFIALLFILGGMAILHPFNACLGPNESQDRTLTLAVECGFLSMIIFGIASLAFLGLAAAIISIIVG-LIGWYYA 237 (264)
T ss_pred HHHhcccHHHHHHHHHHHHhcCccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH-HHHHHHH
Confidence 56777777788888888888776655 2 22222222322222222222332222223456664444444 4455555
Q ss_pred HHHh-----------cCCCCCCCCCC
Q 033456 105 YKIA-----------TGGNHIPAKAE 119 (119)
Q Consensus 105 ~~~~-----------~~~~~~~~~~~ 119 (119)
|+-. .+..+-|||||
T Consensus 238 y~~y~~~sk~dA~~V~~tg~lPk~ee 263 (264)
T PRK01030 238 YVKFVKLSKRDAAAVLWTGLLPKKEE 263 (264)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCccc
Confidence 5422 23336677776
No 6
>PF10315 DUF2416: Protein of unknown function (DUF2416); InterPro: IPR019419 This entry represents conserved proteins with unknown function and is restricted to fungi.
Probab=68.10 E-value=6.6 Score=27.89 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHHHHHHH
Q 033456 33 GGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETS---KVMPAGIVAGISALMTGFYLYK 106 (119)
Q Consensus 33 aG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t~---K~mPaGl~~~ls~~~~~~y~~~ 106 (119)
.-+.+|++....+|.+++ .|...+-....+=|.+=..+-++|-+|+. |+.|- .++.+++.-+..|..+
T Consensus 36 ~~llFg~a~~lg~ymi~d-----GD~~NGsGf~~AWS~lYLivngr~siksl~~gr~~PL-~Ls~~a~~na~lYG~~ 106 (108)
T PF10315_consen 36 SCLLFGAAFALGGYMIYD-----GDLENGSGFVTAWSTLYLIVNGRKSIKSLRRGRVWPL-ALSGLALGNAGLYGRR 106 (108)
T ss_pred HhHHHHHHHHhhhheeec-----CCccccchHHHHHHHHHHHHcChhhhHHhccCCchHH-HHHHHHHhchhheeee
Confidence 445667777777887653 24445556667778877777788888875 89998 6666666666666543
No 7
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=67.05 E-value=22 Score=28.86 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=46.1
Q ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 033456 25 KGSTASLAGGVGTGLLLVLAGYLSLKAFEKK-KN-SYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGF 102 (119)
Q Consensus 25 ~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~-~~-~~~~~~~~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~~~~~~ 102 (119)
.--.|-+++.+..|+.+..+|+..|...||+ .| ...|..-.+....++..... ........-+.+.+++..+..
T Consensus 40 ~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNpLA~P~iLGissgA~lg~~~~~~~~----~~~~~~~~~~~a~iGal~~~~ 115 (311)
T PF01032_consen 40 DLRLPRILAAILVGAALALSGALLQTLTRNPLADPSILGISSGASLGAVLAILLF----PSLSFYGLPLFAFIGALLALL 115 (311)
T ss_dssp CTCHHHHHHHHHHHHHHHHHHHHHHHHTT-TT--TTTTTHHHHHHHHHHHHHHCC----TTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCccccccchHhHHHHHHHHHHHHHh----hhhhhhhHHHHHHHHHHHHHH
Confidence 3456888999999999999999988888875 23 33454444443333333332 111112222456666666666
Q ss_pred HHHHHh
Q 033456 103 YLYKIA 108 (119)
Q Consensus 103 y~~~~~ 108 (119)
..+.+.
T Consensus 116 lv~~l~ 121 (311)
T PF01032_consen 116 LVYLLS 121 (311)
T ss_dssp HHHHCH
T ss_pred HHhhhh
Confidence 666665
No 8
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=61.90 E-value=5.8 Score=33.89 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHhhhhhHhhhcCChh
Q 033456 4 FCFTIPYGLILIGGGIVGFAKKGSTA 29 (119)
Q Consensus 4 fcl~~~ya~ll~~GGi~Gy~k~gS~~ 29 (119)
+|+.+.+-+||.+||++||+.+-++|
T Consensus 304 ~c~~~~i~~lL~ig~~~gFv~AttKp 329 (387)
T PF12751_consen 304 SCIYLSILLLLVIGFAIGFVFATTKP 329 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 68888888899999999999887765
No 9
>COG3859 Predicted membrane protein [Function unknown]
Probab=60.94 E-value=62 Score=25.00 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=48.6
Q ss_pred hhcCChhHhHHHHHHHHHHHHHH--HHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHh-hCCcchHHHHHHHHHHH
Q 033456 23 AKKGSTASLAGGVGTGLLLVLAG--YLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYME-TSKVMPAGIVAGISALM 99 (119)
Q Consensus 23 ~k~gS~~SLiaG~~~G~ll~~ag--~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~-t~K~mPaGl~~~ls~~~ 99 (119)
.|.|=+.-+.+|+..|.+-+..| |... +.+ ..-...-+..+.-+++.+...-.| ++|..+.-+.+ .=.+.
T Consensus 49 fRrG~kaG~~tGLl~Gll~~i~G~~Y~lh-----psQ-~~ldYilaf~~iG~aG~F~~~~~~~~~k~i~~~~~~-~~~av 121 (185)
T COG3859 49 FRRGLKAGLLTGLLWGLLHLILGKAYILH-----PSQ-VLLDYILAFMAIGFAGLFASSVRKQKKKLINKALGG-VFIAV 121 (185)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCchhhcc-----HHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 36677788889999998887776 4321 111 111112233455577777766666 56777774333 33456
Q ss_pred HHHHHHHHhcC
Q 033456 100 TGFYLYKIATG 110 (119)
Q Consensus 100 ~~~y~~~~~~~ 110 (119)
+.+|.+-...|
T Consensus 122 ~lRyl~HfisG 132 (185)
T COG3859 122 FLRYLFHFISG 132 (185)
T ss_pred HHHHHHHHHHH
Confidence 77787776544
No 10
>COG4872 Predicted membrane protein [Function unknown]
Probab=56.00 E-value=69 Score=27.37 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=34.2
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Q 033456 27 STASLAGGVGTGLLLVLAGYLSLKAFEK-KKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISAL 98 (119)
Q Consensus 27 S~~SLiaG~~~G~ll~~ag~~~~~~~~~-~~~~~~~~~~~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~~ 98 (119)
+..+-++|+.+|+..+. ...-+|++ |+..+.....++....=+.++-..|=-+++|++|+.+ .+++++
T Consensus 47 ~i~atigglLlgagvi~---fVAANW~~iprlvkv~llf~li~gvy~gG~~awreqq~~~~lgeAL-~ilaAa 115 (394)
T COG4872 47 MIAATIGGLLLGAGVIT---FVAANWFSIPRLVKVILLFSLIFGVYIGGFYAWREQQSKRFLGEAL-LILAAA 115 (394)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHhhcccchhhHH-HHHHHH
Confidence 34566666666664332 22235666 5555544443333333333333445556678888844 344444
No 11
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=52.12 E-value=1.6e+02 Score=26.55 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 033456 32 AGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISA 97 (119)
Q Consensus 32 iaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~ 97 (119)
.+-++.+.++..+||...+.+ +..+ +-..+=.-|...-.-|+++.||+.+=-++..+..
T Consensus 121 ~~~~i~s~~Yafsg~~~~~~~----~~~f---ld~~i~lPL~llgie~~~~~~k~~~~~~~~~l~~ 179 (843)
T PF09586_consen 121 WAALIGSLLYAFSGYVIYYSF----NIMF---LDAMILLPLLLLGIERLLKEKKWWLFIISLALAL 179 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----hHHH---HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 555555677777888876422 3333 2222333444545688999999877644444444
No 12
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=52.11 E-value=1.4e+02 Score=24.80 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=34.9
Q ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-Cc-hhHHHHHHHHHHHHHHHH
Q 033456 25 KGSTASLAGGVGTGLLLVLAGYLSLKAFEKK-KN-SYFAIVIETVCAAVLTVV 75 (119)
Q Consensus 25 ~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~-~~-~~~~~~~~l~~S~~L~~~ 75 (119)
.--.|=+++.+..|+.+..+|+..++..||+ .| ...|..-.+....++..+
T Consensus 56 ~~RlPRil~a~l~G~~La~sG~llQ~l~rNpLA~P~iLGissGA~l~~~l~i~ 108 (331)
T PRK03784 56 QLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVL 108 (331)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhhHHHHHHHHHHHHHH
Confidence 3456888999999999999999998888876 33 345555444434444443
No 13
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=50.84 E-value=1.9e+02 Score=26.12 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=33.0
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHhhhc--CchhHHHHHHHHHHHHHHH
Q 033456 27 STASLAGGVGTGLLLVLAGYLSLKAFEKK--KNSYFAIVIETVCAAVLTV 74 (119)
Q Consensus 27 S~~SLiaG~~~G~ll~~ag~~~~~~~~~~--~~~~~~~~~~l~~S~~L~~ 74 (119)
-.|-+++++..|+.+..+|...+...||+ +....|...++....++..
T Consensus 62 RlPR~l~a~l~G~~La~sG~~lQ~l~rNpLA~P~ilGissGA~lg~~~~~ 111 (668)
T PRK10577 62 RLPRLAIALLVGAALGLAGALLQQVLRNPLASPTTLGVAAGAQLALVLAT 111 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhHHHHHHHHHHHHHH
Confidence 45888999999999999999988888875 2234554444444443333
No 14
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=49.42 E-value=77 Score=21.18 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=32.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhh-c--CchhHHHHHHHHHHHHHHHH-----HHHHHHhhCCcchHHHHHHH
Q 033456 29 ASLAGGVGTGLLLVLAGYLSLKAFEK-K--KNSYFAIVIETVCAAVLTVV-----MAQRYMETSKVMPAGIVAGI 95 (119)
Q Consensus 29 ~SLiaG~~~G~ll~~ag~~~~~~~~~-~--~~~~~~~~~~l~~S~~L~~~-----m~~R~~~t~K~mPaGl~~~l 95 (119)
--++.|.+.+..-...|.......++ . .+....|...-..+..+... ...|..+.++..|.+++..+
T Consensus 7 wll~~G~l~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~l~~w~~~~r~~~~~~~~~~~l~ls~ 81 (104)
T PF09990_consen 7 WLLVLGLLGAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLLLAIWRWLWRRRDPRAVSPFGLALSL 81 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHHH
Confidence 34667777777666677765544311 1 22234444443344444433 23344433444455444433
No 15
>PRK10441 iron-enterobactin transporter membrane protein; Provisional
Probab=49.05 E-value=1.5e+02 Score=24.51 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=33.7
Q ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-Cc-hhHHHHHHHHHHHHHHH
Q 033456 25 KGSTASLAGGVGTGLLLVLAGYLSLKAFEKK-KN-SYFAIVIETVCAAVLTV 74 (119)
Q Consensus 25 ~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~-~~-~~~~~~~~l~~S~~L~~ 74 (119)
.--.|-+++++..|+.+..+|...|+..||+ .| ...|..-++....++..
T Consensus 58 ~~RLPR~l~ailvG~~LavaG~llQ~l~rNpLA~P~ilGissGA~l~~v~~~ 109 (335)
T PRK10441 58 DARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGA 109 (335)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHhHHHHHHHHHH
Confidence 3345778999999999999999988888876 23 34554444443333433
No 16
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=46.21 E-value=72 Score=19.90 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhCCc
Q 033456 68 CAAVLTVVMAQRYMETSKV 86 (119)
Q Consensus 68 ~S~~L~~~m~~R~~~t~K~ 86 (119)
++.+....-..||.+++|+
T Consensus 55 ~~~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 55 LGLLTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3333444445677777664
No 17
>PRK11228 fecC iron-dicitrate transporter permease subunit; Provisional
Probab=45.25 E-value=1.7e+02 Score=23.95 Aligned_cols=45 Identities=24% Similarity=0.123 Sum_probs=31.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhc-Cc-hhHHHHHHHHHHHHH
Q 033456 28 TASLAGGVGTGLLLVLAGYLSLKAFEKK-KN-SYFAIVIETVCAAVL 72 (119)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~~~~~~~~~~-~~-~~~~~~~~l~~S~~L 72 (119)
.|=+++++..|+.+..+|...|+..||+ .| ...|..-++....++
T Consensus 52 lPR~l~a~l~G~~La~sG~~lQ~l~rNpLa~P~ilGissGA~l~~~~ 98 (323)
T PRK11228 52 LPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMAL 98 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccHhhHHHHHHHHHHH
Confidence 4668899999999999999998888876 33 345544444444433
No 18
>PRK13499 rhamnose-proton symporter; Provisional
Probab=44.15 E-value=1.9e+02 Score=24.21 Aligned_cols=67 Identities=13% Similarity=0.013 Sum_probs=42.9
Q ss_pred HHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHHHHH
Q 033456 13 ILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEK-KKNSYFAIVIETVCAAVLTVVMAQRYM 81 (119)
Q Consensus 13 ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~-~~~~~~~~~~~l~~S~~L~~~m~~R~~ 81 (119)
.+.++.+..+.+.-|..++..+...|++-........+..|. |-. .+..++.+...++...++.-+.
T Consensus 55 ~~~~~~f~~~~~~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS--~~~pIs~Gl~lv~gtL~~~i~~ 122 (345)
T PRK13499 55 ALLLPDFWAYYSSFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMS--LGIGIAIGITLIVGTLMPPIIN 122 (345)
T ss_pred HHHhhhHHHHHHhcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhh--hhhhHHHHHHHHHHHHHHHHHc
Confidence 344488888999889999999999999877766665555554 322 2233444445555555554443
No 19
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=43.89 E-value=57 Score=25.02 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=23.8
Q ss_pred hhhhhHhhhcCCh----hHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033456 16 GGGIVGFAKKGST----ASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (119)
Q Consensus 16 ~GGi~Gy~k~gS~----~SLiaG~~~G~ll~~ag~~~~~~~~~~ 55 (119)
.||++|-+..+.. ..=..+....+++...+|-.+|.|+++
T Consensus 12 ~ggl~g~LlG~k~~r~~~g~a~~~Gg~AalG~lA~~ayq~~q~~ 55 (188)
T PF04391_consen 12 AGGLLGMLLGGKKGRKMGGGALKYGGLAALGGLAYKAYQNWQQN 55 (188)
T ss_pred HHHHHHHHhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3888887764332 333334444455666777777777654
No 20
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=42.82 E-value=1.9e+02 Score=23.89 Aligned_cols=76 Identities=9% Similarity=0.150 Sum_probs=43.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhc-Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHH
Q 033456 28 TASLAGGVGTGLLLVLAGYLSLKAFEKK-KN-SYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLY 105 (119)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~~~~~~~~~~-~~-~~~~~~~~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~~~~~~y~~ 105 (119)
.|=+++.+..|+.+..+|...|...||+ .| ...|..-++....++...+.. ...-..| +.+.+++..+....+
T Consensus 60 lPRil~a~l~G~~LalsG~llQ~l~rNpLa~P~iLGissGA~lg~~~~~~~~~---~~~~~~~--~~a~~gal~~~~lv~ 134 (330)
T PRK10440 60 LPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFG---QDLTAIA--LAAMAGGIVTSLLVW 134 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcHhhHHHHHHHHHHHHHHHHh---hHHHHHH--HHHHHHHHHHHHHHH
Confidence 4668899999999999999988888776 33 345544443333333332211 0100122 445555555556666
Q ss_pred HHh
Q 033456 106 KIA 108 (119)
Q Consensus 106 ~~~ 108 (119)
.+.
T Consensus 135 ~l~ 137 (330)
T PRK10440 135 LLA 137 (330)
T ss_pred HHH
Confidence 655
No 21
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=41.94 E-value=1.2e+02 Score=21.03 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=21.5
Q ss_pred hHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchh
Q 033456 20 VGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSY 59 (119)
Q Consensus 20 ~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~ 59 (119)
-.|+....+-...-|.++|. +.+...++.|++|+++.
T Consensus 37 ~sy~~~~~~l~yaI~aVvgl---IGai~VY~k~~~Gd~dv 73 (98)
T PF13572_consen 37 TSYFDPVTKLMYAIGAVVGL---IGAIRVYIKWNNGDQDV 73 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccCCCcH
Confidence 34444444444444445554 45667888888876543
No 22
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.21 E-value=75 Score=23.31 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhhhHhhhcCC
Q 033456 8 IPYGLILIGGGIVGFAKKGS 27 (119)
Q Consensus 8 ~~ya~ll~~GGi~Gy~k~gS 27 (119)
++-|+++.++|+.+-+..++
T Consensus 12 iilgilli~~gI~~Lv~~~~ 31 (191)
T PF04156_consen 12 IILGILLIASGIAALVLFIS 31 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777666553
No 23
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=41.21 E-value=1.4e+02 Score=21.63 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=21.5
Q ss_pred HHHhhCCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 033456 79 RYMETSKVMPAGIVAGISALMTGFYLYKIATGGN 112 (119)
Q Consensus 79 R~~~t~K~mPaGl~~~ls~~~~~~y~~~~~~~~~ 112 (119)
...++.+.+-. .+-.++++.+.+..++..+...
T Consensus 50 ~l~~~~~~~~~-~l~~~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 50 ALLKSSPWLFM-ILKLLGALYLLYLGYKLLRSKF 82 (191)
T ss_pred HHHHhChHHHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 33343433333 6788888888888888885444
No 24
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=40.98 E-value=52 Score=19.21 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=18.3
Q ss_pred cCChhHhHHHHHHHHHHHHHHHHH
Q 033456 25 KGSTASLAGGVGTGLLLVLAGYLS 48 (119)
Q Consensus 25 ~gS~~SLiaG~~~G~ll~~ag~~~ 48 (119)
.+|+.|.|+|++.|.+++..-+..
T Consensus 2 p~s~IaIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 2 PSSTIAIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHH
Confidence 368889999999998877655544
No 25
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=39.84 E-value=2.1e+02 Score=23.55 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=33.7
Q ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHhhhc--CchhHHHHHHHHHHHHHHH
Q 033456 26 GSTASLAGGVGTGLLLVLAGYLSLKAFEKK--KNSYFAIVIETVCAAVLTV 74 (119)
Q Consensus 26 gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~--~~~~~~~~~~l~~S~~L~~ 74 (119)
--.|=+++++..|+.+..+|...|...||+ +....|....+....++..
T Consensus 52 ~RlPRil~a~lvG~~La~sG~i~Q~l~rNpLa~P~iLGissGA~l~~~l~~ 102 (325)
T TIGR03869 52 LRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVL 102 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 345778999999999999999988888875 3334555544444444444
No 26
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.13 E-value=1.4e+02 Score=21.53 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=4.3
Q ss_pred hHHHHHHHH
Q 033456 31 LAGGVGTGL 39 (119)
Q Consensus 31 LiaG~~~G~ 39 (119)
+|+|+.+|+
T Consensus 52 fIsGilVGa 60 (116)
T COG5336 52 FISGILVGA 60 (116)
T ss_pred HHHHHHHHH
Confidence 444444444
No 27
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=38.24 E-value=1.3e+02 Score=25.06 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCch-hHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 033456 36 GTGLLLVLAGYLSLKAFEKKKNS-YFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGN 112 (119)
Q Consensus 36 ~~G~ll~~ag~~~~~~~~~~~~~-~~~~~~~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~~~~~~y~~~~~~~~~ 112 (119)
..|..++..++.++ +|.+|+ +++ +++.....+.-|. -++++|.-..-++=.+|...=..+-.+.++
T Consensus 7 l~Gl~~~~~a~~~~---~Dk~np~R~g-------t~lFW~llg~~F~-~G~~lp~~~~G~lvl~m~~la~~~~v~~g~ 73 (308)
T PF06166_consen 7 LIGLVFIITAVRSL---RDKTNPKRIG-------TALFWGLLGLIFI-FGDYLPPFVVGILVLVMALLAGFGQVGIGS 73 (308)
T ss_pred HHHHHHHHHHHHHH---cCCCCCcccc-------hHHHHHHHHHHHH-cCccchhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34666666666554 454443 343 2334444455454 456889866666656666555555554444
No 28
>PTZ00233 variable surface protein Vir18; Provisional
Probab=37.71 E-value=23 Score=31.29 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=26.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 033456 86 VMPAGIVAGISALMTGFYLYKIATGGNHIPAK 117 (119)
Q Consensus 86 ~mPaGl~~~ls~~~~~~y~~~~~~~~~~~~~~ 117 (119)
-+|.|++++|+++-=--=.||++...|+|+.+
T Consensus 439 SaPmGIvLLLGLLFKyTPLWRvLTKknRKk~a 470 (509)
T PTZ00233 439 SMPIGIALLLGLLFKYTPLWRVLTKKNRKKGA 470 (509)
T ss_pred ccchhHHHHHHHhhccchhHHhhhhccccccc
Confidence 49999999998775444589999999988765
No 29
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=37.27 E-value=3.2e+02 Score=24.74 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=26.6
Q ss_pred hhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033456 23 AKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (119)
Q Consensus 23 ~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~ 55 (119)
+..--.|=+++.+..|+.+..+|...|+..||+
T Consensus 393 ~~~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNp 425 (668)
T PRK10577 393 LLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNP 425 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334445778889999999999999998888876
No 30
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=36.82 E-value=1.9e+02 Score=21.96 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=11.8
Q ss_pred hHHHHHHHHhhhhhHhhh
Q 033456 7 TIPYGLILIGGGIVGFAK 24 (119)
Q Consensus 7 ~~~ya~ll~~GGi~Gy~k 24 (119)
+-.|..=+..|++.++++
T Consensus 18 G~af~~G~~~G~~~g~~~ 35 (170)
T TIGR00980 18 GGAFAMGTIGGSIFQAFK 35 (170)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345666666777777774
No 31
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.70 E-value=1.8e+02 Score=21.88 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhhHhhhcCC
Q 033456 9 PYGLILIGGGIVGFAKKGS 27 (119)
Q Consensus 9 ~ya~ll~~GGi~Gy~k~gS 27 (119)
.++.+..+-|+++++..++
T Consensus 89 ~~~if~~~~gi~~~f~~~~ 107 (206)
T PF06570_consen 89 FFGIFSLLFGIMGFFSPKN 107 (206)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3567777889999877643
No 32
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=36.21 E-value=2.4e+02 Score=23.14 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=33.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhc-Cc-hhHHHHHHHHHHHHHHHH
Q 033456 28 TASLAGGVGTGLLLVLAGYLSLKAFEKK-KN-SYFAIVIETVCAAVLTVV 75 (119)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~~~~~~~~~~-~~-~~~~~~~~l~~S~~L~~~ 75 (119)
.|=+++.+..|+.+..+|...|+..||+ .| ...|....+....++...
T Consensus 52 lPR~l~a~l~G~~LavsG~~lQ~l~rNpLA~P~iLGissGA~l~~~l~~~ 101 (318)
T PRK09777 52 LPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALL 101 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhhHHHHHHHHHHHHHH
Confidence 4778899999999999999988888876 23 345555544444444443
No 33
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=36.07 E-value=43 Score=25.82 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=16.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhh
Q 033456 28 TASLAGGVGTGLLLVLAGYLSLKAFE 53 (119)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~~~~~~~~ 53 (119)
-.|.|.|+++-..++...|..+|.+|
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 47888888776655555555555443
No 34
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=35.16 E-value=1.6e+02 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.600 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 033456 36 GTGLLLVLAGYLSLKAFEK 54 (119)
Q Consensus 36 ~~G~ll~~ag~~~~~~~~~ 54 (119)
++|.++++.+|++.+.|-.
T Consensus 16 ~lG~~LLv~a~Lsin~~l~ 34 (96)
T PF07214_consen 16 VLGMILLVLAYLSINDYLS 34 (96)
T ss_pred HHHHHHHHHHHHHHccccc
Confidence 4688889999999887654
No 35
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=34.76 E-value=2.3e+02 Score=26.49 Aligned_cols=11 Identities=18% Similarity=0.002 Sum_probs=5.1
Q ss_pred cCChhHhHHHH
Q 033456 25 KGSTASLAGGV 35 (119)
Q Consensus 25 ~gS~~SLiaG~ 35 (119)
.+++-..++.+
T Consensus 22 ~~~~~~~~~~~ 32 (762)
T PRK03776 22 GRNTWWFAATL 32 (762)
T ss_pred ccccchHHHHH
Confidence 44444444443
No 36
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=34.16 E-value=41 Score=26.83 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=20.8
Q ss_pred HHhhhhhHhhhcCChhHhHHHHHHHHHH
Q 033456 14 LIGGGIVGFAKKGSTASLAGGVGTGLLL 41 (119)
Q Consensus 14 l~~GGi~Gy~k~gS~~SLiaG~~~G~ll 41 (119)
=.+||++||+. +..+..+.|+.+|-++
T Consensus 6 ki~g~~~G~~~-~g~~Ga~~G~~~Gh~~ 32 (267)
T PRK09430 6 KILGFAFGFLF-GGFFGALLGLLIGHMF 32 (267)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHhHH
Confidence 36899999999 4577778887777754
No 37
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=33.77 E-value=2.2e+02 Score=21.99 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=29.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHHHHHHH
Q 033456 55 KKNSYFAIVIETVCAAVLTVVMAQRYMET--SKVMPAGIVAGISALMTGFYLYKI 107 (119)
Q Consensus 55 ~~~~~~~~~~~l~~S~~L~~~m~~R~~~t--~K~mPaGl~~~ls~~~~~~y~~~~ 107 (119)
|+-|.+-...-+..+.-+.+.+.+-...+ ..++|+.+.+.++...+.+.....
T Consensus 61 GkvPlLI~L~l~l~~F~l~G~~lq~~~~~~~~~~lp~~l~~~~al~~sl~~~~~~ 115 (202)
T PF07290_consen 61 GKVPLLIWLVLLLSSFGLIGYLLQYVAISLFGGPLPAWLAAPVALFLSLFFTRYL 115 (202)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 55554333333333444555555544443 478899887777777666555443
No 38
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=32.37 E-value=2.7e+02 Score=22.55 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=35.4
Q ss_pred HHHHhhhhhHhhhcCC----hhHhHHHHHHHHHHHH-HHHHHHHHhhh--c-CchhHHHHHHHHHHHHHHHHHHH
Q 033456 12 LILIGGGIVGFAKKGS----TASLAGGVGTGLLLVL-AGYLSLKAFEK--K-KNSYFAIVIETVCAAVLTVVMAQ 78 (119)
Q Consensus 12 ~ll~~GGi~Gy~k~gS----~~SLiaG~~~G~ll~~-ag~~~~~~~~~--~-~~~~~~~~~~l~~S~~L~~~m~~ 78 (119)
+++.++-+..|.|+.. ++.+-.|+..|.+... .+......+.. + .++.........+++++...|+.
T Consensus 18 A~LIV~illa~L~k~~~~~~~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~ 92 (283)
T TIGR00145 18 AALVVSVLLSYLKRAQRTRLRGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGL 92 (283)
T ss_pred HHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999998543 4566777777665542 23333222222 1 21343334444445555555553
No 39
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=32.10 E-value=3.9e+02 Score=24.23 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhhhhHhhhc---------CChhHhHHHHHHHHHH---HHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 033456 7 TIPYGLILIGGGIVGFAKK---------GSTASLAGGVGTGLLL---VLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTV 74 (119)
Q Consensus 7 ~~~ya~ll~~GGi~Gy~k~---------gS~~SLiaG~~~G~ll---~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~ 74 (119)
++.+|.++.+||.+||... =|...+---++.|..- ++.|.. ...+--.+-+.+|..|+.
T Consensus 559 N~~fG~lLGLtg~~g~llglpldiRHVafSsanlgyaa~sG~~~~~~F~lg~~---------~vlLiGvvNl~VSF~lAl 629 (677)
T COG4389 559 NFIFGMLLGLTGYFGHLLGLPLDIRHVAFSSANLGYAAVSGNVGLGTFVLGIF---------SVLLIGLVNLCVSFSLAL 629 (677)
T ss_pred HHHHHHHHcccHHHHHHcCCCcceeeeeeccchhHHHHhcchhhHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 4678889999999999752 2333332222222211 111110 001111234667888999
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHhcCCC----CCCCCCC
Q 033456 75 VMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGN----HIPAKAE 119 (119)
Q Consensus 75 ~m~~R~~~t~K~mPaGl~~~ls~~~~~~y~~~~~~~~~----~~~~~~~ 119 (119)
.|..|-..|+ +.|-.=..-.+|+...-.. .||+|||
T Consensus 630 ~vAlRSr~t~---------i~s~r~I~~~VW~~Ik~~PL~Lf~P~a~~~ 669 (677)
T COG4389 630 FVALRSRGTK---------IGSIRNIIKSVWNQIKSNPLILFLPPAKEQ 669 (677)
T ss_pred HHHHHhcccc---------chhHHHHHHHHHHHHhcCCcEEEcCCCcCC
Confidence 9999988875 2334444555777653332 5555553
No 40
>PRK10209 acid-resistance membrane protein; Provisional
Probab=31.79 E-value=2.2e+02 Score=21.29 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=27.1
Q ss_pred hHHHHHHHHhhhhhH---hhhcC--ChhHhHHHHHHHHHHHHHHHHHHH
Q 033456 7 TIPYGLILIGGGIVG---FAKKG--STASLAGGVGTGLLLVLAGYLSLK 50 (119)
Q Consensus 7 ~~~ya~ll~~GGi~G---y~k~g--S~~SLiaG~~~G~ll~~ag~~~~~ 50 (119)
+...|..+.+.|++. +.+.+ +......++..|.++...|.....
T Consensus 50 ~~~~g~~ll~~Gi~~l~~~~~~~~~~~~~~~~~ll~Gil~ii~Gil~l~ 98 (190)
T PRK10209 50 STVVGILLICSGIALIVGLFANRSHNFWPMLSGILLGVAYLVLGYFFIR 98 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777753 33322 234555567778888888887664
No 41
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=31.59 E-value=2.7e+02 Score=22.46 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=16.2
Q ss_pred HHHhhhhhHhhhcCChhHhHHHHHHHHH
Q 033456 13 ILIGGGIVGFAKKGSTASLAGGVGTGLL 40 (119)
Q Consensus 13 ll~~GGi~Gy~k~gS~~SLiaG~~~G~l 40 (119)
.+.++|+..+.++ +.++...|...|.+
T Consensus 151 vLfl~a~~~~~~~-~~~~~~~g~~~G~~ 177 (306)
T PF03239_consen 151 VLFLAALAASLRK-DAASILLGAILGIA 177 (306)
T ss_pred HHHHHHHHHhccc-chHHHHHHHHHHHH
Confidence 4566777777766 55555555555543
No 42
>PRK11285 araH L-arabinose transporter permease protein; Provisional
Probab=31.52 E-value=2.9e+02 Score=22.54 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=26.9
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 033456 55 KKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGG 111 (119)
Q Consensus 55 ~~~~~~~~~~~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~~~~~~y~~~~~~~~ 111 (119)
+.+......++++++.++....+.-..|. | .|. +++.++.............++
T Consensus 104 ~~~~~~all~al~~g~l~G~~~g~lv~~l-~-i~~-~I~TLg~~~i~~gl~~~~~~g 157 (333)
T PRK11285 104 TESLWLGVAAGLLLGAAVGLVNGFVIARL-K-INA-LITTLATMQIVRGLAYIISDG 157 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CcH-HHHHHHHHHHHHHHHHHHcCC
Confidence 33334444555555555554433322233 2 466 666676666666554444443
No 43
>PRK03557 zinc transporter ZitB; Provisional
Probab=30.64 E-value=2.3e+02 Score=22.75 Aligned_cols=18 Identities=6% Similarity=0.078 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033456 89 AGIVAGISALMTGFYLYK 106 (119)
Q Consensus 89 aGl~~~ls~~~~~~y~~~ 106 (119)
-.+++++-.+...+-.++
T Consensus 186 Dpi~~ilis~~i~~~~~~ 203 (312)
T PRK03557 186 DPILSILVSVLVLRSAWR 203 (312)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 44
>PRK11099 putative inner membrane protein; Provisional
Probab=30.60 E-value=3.4e+02 Score=23.15 Aligned_cols=68 Identities=29% Similarity=0.363 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhc---CchhH--HHHHHHHHHHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHH
Q 033456 30 SLAGGVGTGLLLVLAGYLSLKAFEKK---KNSYF--AIVIETVCAAVLTVVMAQRYMETS---KVMPAGIVAGISALMTG 101 (119)
Q Consensus 30 SLiaG~~~G~ll~~ag~~~~~~~~~~---~~~~~--~~~~~l~~S~~L~~~m~~R~~~t~---K~mPaGl~~~ls~~~~~ 101 (119)
+|+.|+++|.++==+-++....+||- +|.+. ...+.++++.++... ..+.+ +.+|.+..++++..+..
T Consensus 220 ~l~~Gl~~G~~lqrsrfCf~ga~Rd~~~~~~~~~~~~~l~~l~va~~~~~~----~~~~G~~~~i~~~~~~~~lGg~lFG 295 (399)
T PRK11099 220 AMLFGVGFGLLIERAQICFTSAFRDLWITGRTHMAKAIILGMAVSAIGIFS----YIQLGVPPKIFWAGPNAVIGGLLFG 295 (399)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH----HHHcCCccccccccHHHHHHHHHHH
Confidence 45566666665544444444555552 23222 333334444333222 12233 55787776777666543
No 45
>PF05513 TraA: TraA; InterPro: IPR008873 Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response [].; GO: 0000746 conjugation, 0005576 extracellular region
Probab=30.32 E-value=74 Score=22.96 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=17.4
Q ss_pred hhhhhHhhhcCChhHhHHHHHHHHHHHH
Q 033456 16 GGGIVGFAKKGSTASLAGGVGTGLLLVL 43 (119)
Q Consensus 16 ~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ 43 (119)
++|++.|+|+++ |-.+.|+..+..+.-
T Consensus 86 i~~~v~y~~TkN-~~~~~Gf~i~iIft~ 112 (119)
T PF05513_consen 86 IVGVVMYFKTKN-PMVFGGFAIVIIFTN 112 (119)
T ss_pred HHHHHHHHhccC-hHHhhhhHHhHhHHH
Confidence 566777888888 445666666655443
No 46
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=28.68 E-value=2.8e+02 Score=21.45 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=11.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHh
Q 033456 84 SKVMPAGIVAGISALMTGFYLYKIA 108 (119)
Q Consensus 84 ~K~mPaGl~~~ls~~~~~~y~~~~~ 108 (119)
.+.-|.++.+..-.+.+..|..++.
T Consensus 95 ~~L~~~~~~~~flGl~~ivygv~i~ 119 (191)
T PF06168_consen 95 WDLRPLGIFALFLGLILIVYGVAIY 119 (191)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 47
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=28.67 E-value=86 Score=18.98 Aligned_cols=25 Identities=28% Similarity=0.697 Sum_probs=12.5
Q ss_pred hhCCcchHHHHHHHHHHHHHHHHHH
Q 033456 82 ETSKVMPAGIVAGISALMTGFYLYK 106 (119)
Q Consensus 82 ~t~K~mPaGl~~~ls~~~~~~y~~~ 106 (119)
|..+++|.|..+..+.+....|..+
T Consensus 2 ke~plv~ig~~~~~~~l~~g~~~~~ 26 (54)
T PF04588_consen 2 KENPLVPIGMLATVGALAYGLYNFR 26 (54)
T ss_dssp -S--CHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3446677766666665555444433
No 48
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=28.51 E-value=2.8e+02 Score=21.46 Aligned_cols=37 Identities=22% Similarity=0.016 Sum_probs=24.8
Q ss_pred hhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHh
Q 033456 16 GGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAF 52 (119)
Q Consensus 16 ~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~ 52 (119)
++++++++.-|-.|-||-=+++=..+..+||..+...
T Consensus 51 ~~~~L~wL~vGkvPlLI~L~l~l~~F~l~G~~lq~~~ 87 (202)
T PF07290_consen 51 FTQILSWLNVGKVPLLIWLVLLLSSFGLIGYLLQYVA 87 (202)
T ss_pred hHhHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999998874433334556777765443
No 49
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.63 E-value=3.4e+02 Score=22.18 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=19.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 033456 28 TASLAGGVGTGLLLVLAGYLSLKAFEK 54 (119)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~~~~~~~~~ 54 (119)
..+.++....+.++...++..++-++.
T Consensus 164 ~~~vi~~G~IAl~Fi~~~mAilHPFNA 190 (265)
T TIGR01148 164 ISYVIANGYIALLFIIGGMAILHPFNA 190 (265)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCcchh
Confidence 356677667778888888888776655
No 50
>PRK13591 ubiA prenyltransferase; Provisional
Probab=27.60 E-value=3.5e+02 Score=22.33 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 033456 86 VMPAGIVAGISALMTGFYLYKIATGGNHIPA 116 (119)
Q Consensus 86 ~mPaGl~~~ls~~~~~~y~~~~~~~~~~~~~ 116 (119)
++++ .+.+-|..+...|++...++.+.+|+
T Consensus 249 ~~~~-~~~~~s~~~~l~~~~~~~~~~~~~~~ 278 (307)
T PRK13591 249 AFEP-IILLYSFVCGLICIQVYSSPFENEPS 278 (307)
T ss_pred ccCc-hhhHHHHHHHHHHHHHHcCCcccCcH
Confidence 3345 56666899999999999988876654
No 51
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=27.35 E-value=63 Score=24.91 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 033456 88 PAGIVAGISALMTGFYLYKIAT 109 (119)
Q Consensus 88 PaGl~~~ls~~~~~~y~~~~~~ 109 (119)
=-|+|.+|++..++|++|+..+
T Consensus 164 iGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 164 IGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhHHHHHHHHHHHHHHHhhhcc
Confidence 3578899999999999888653
No 52
>PRK09699 D-allose transporter subunit; Provisional
Probab=26.77 E-value=3.4e+02 Score=21.88 Aligned_cols=45 Identities=4% Similarity=0.007 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 033456 65 ETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGN 112 (119)
Q Consensus 65 ~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~~~~~~y~~~~~~~~~ 112 (119)
++++..++... ..+..++.-+|+ +++.++......-......+++
T Consensus 98 al~~g~l~G~~--ng~li~~~~i~~-~I~TLg~~~i~~gl~~~~~~~~ 142 (312)
T PRK09699 98 GVLVGGALGAI--NGCLVNWTGLHP-FIITLGTNAIFRGITLVISDAN 142 (312)
T ss_pred HHHHHHHHHHH--HHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHcCCc
Confidence 33343433333 344544445677 6777776666665555555554
No 53
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.45 E-value=3.4e+02 Score=24.13 Aligned_cols=17 Identities=35% Similarity=0.424 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhhhHhhh
Q 033456 8 IPYGLILIGGGIVGFAK 24 (119)
Q Consensus 8 ~~ya~ll~~GGi~Gy~k 24 (119)
.+||.++.+.|+.-..|
T Consensus 365 ~GyGLil~l~~~~l~~~ 381 (646)
T PRK05771 365 AGYGLLLLLIGLLLSFK 381 (646)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 37888888877655443
No 54
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=25.46 E-value=2.7e+02 Score=20.24 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=35.6
Q ss_pred hhhhhHhhhcCChhHhHHH---HHHHHHHHHHHHHHHHHhhhcCchh---HHHHHHHHHHHHHHHHHHHHHHhhC-Ccch
Q 033456 16 GGGIVGFAKKGSTASLAGG---VGTGLLLVLAGYLSLKAFEKKKNSY---FAIVIETVCAAVLTVVMAQRYMETS-KVMP 88 (119)
Q Consensus 16 ~GGi~Gy~k~gS~~SLiaG---~~~G~ll~~ag~~~~~~~~~~~~~~---~~~~~~l~~S~~L~~~m~~R~~~t~-K~mP 88 (119)
....+||..+|-.-+++|. +..+.++...-...++.++ +++. .-..+..++.+++.. ...+..|.. +-.+
T Consensus 61 ~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~~~--~~~~v~~~l~g~~~~~~gli~~-~~~~l~~~~~~~~~ 137 (169)
T PF02417_consen 61 LATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYSRFR--ENPWVQAFLKGVRPAVVGLILA-AAIKLAKKSIKDWI 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCHH
Confidence 4456677776555455553 3344444333333333333 2332 223333333333333 345555542 3223
Q ss_pred HHHHHHHHHHHHHH
Q 033456 89 AGIVAGISALMTGF 102 (119)
Q Consensus 89 aGl~~~ls~~~~~~ 102 (119)
.-.++.++.....+
T Consensus 138 ~~~i~~~~~~~~~~ 151 (169)
T PF02417_consen 138 TIAIALIAFILLLF 151 (169)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 55
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=25.02 E-value=3.1e+02 Score=20.72 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=21.0
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 033456 47 LSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYM 81 (119)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~ 81 (119)
......++.+|++......+++.++|...-+.|..
T Consensus 78 c~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~ 112 (164)
T PTZ00236 78 CTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSA 112 (164)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHHhcChHHH
Confidence 44455565666666666666666666666555544
No 56
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=23.50 E-value=3.1e+02 Score=20.25 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 033456 59 YFAIVIETVCAAVLTVVMAQRYMETSK 85 (119)
Q Consensus 59 ~~~~~~~l~~S~~L~~~m~~R~~~t~K 85 (119)
.+....+.++..+|+.+...|..+.++
T Consensus 32 ~~~~~~a~i~l~ilai~q~~~~~~~~~ 58 (182)
T PF09323_consen 32 IPLLYFAAILLLILAIVQLWRWFRPKR 58 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666666677777777777776543
No 57
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=22.58 E-value=4.9e+02 Score=23.08 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=46.1
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 033456 27 STASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTG 101 (119)
Q Consensus 27 S~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~~~~~ 101 (119)
-+.=++||+..|...+=-+..--+ -.|-++..++..+.....+-+.+-+.|..-++ |.+.++++-+....
T Consensus 21 l~~Dl~AGltva~valP~ama~a~--~aGv~p~~GLyas~i~~~v~alfGgs~~~i~G---Pt~a~~~v~a~~i~ 90 (554)
T COG0659 21 LRGDLLAGLTVAAVALPLAMAFAI--AAGVPPEAGLYASIVAGIIYALFGGSRGLISG---PTGAFAVVLAAVIA 90 (554)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHcCCccceec---cchhhHHHHHHHHH
Confidence 334578898888876533332211 23677888888777766666666677777666 77777776666555
No 58
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.09 E-value=2.9e+02 Score=19.49 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHH--HHHhhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhh-CCcchHHHHH
Q 033456 36 GTGLLLVLAGYLS--LKAFEK-KKNSYFAIVIETVCAAVLTVVMAQRYMET-SKVMPAGIVA 93 (119)
Q Consensus 36 ~~G~ll~~ag~~~--~~~~~~-~~~~~~~~~~~l~~S~~L~~~m~~R~~~t-~K~mPaGl~~ 93 (119)
.+|+++..+|... ..+|++ ++.-+....... .++....+.+..+. ++..+..+..
T Consensus 38 ~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (145)
T PF09925_consen 38 YLGALLLGLGIILFVAANWDDIPRLAKLGLLLAL---LLLSYVGGFWLWRRRSPRLAEALLL 96 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH---HHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3455555555533 356776 544454433322 33333444554433 3444443333
No 59
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=21.70 E-value=3.2e+02 Score=20.13 Aligned_cols=44 Identities=16% Similarity=0.477 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHh
Q 033456 64 IETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIA 108 (119)
Q Consensus 64 ~~l~~S~~L~~~m~~R~~~t~K~mPaGl~~~ls~~~~~~y~~~~~ 108 (119)
++.+-+.++....+.+....-.+.|+ ++..+......+++.+-.
T Consensus 69 iGi~fa~~~~~l~g~~wl~~Pt~~~a-li~G~~tvl~p~~imqP~ 112 (150)
T PF11158_consen 69 IGIAFAVLYALLWGPGWLSRPTLLPA-LIFGLVTVLAPFFIMQPA 112 (150)
T ss_pred HHHHHHHHHHHHHhhccccCCchHHH-HHHHHHHHHHHHHHHHHH
Confidence 34445555666666766666667777 555555566666666644
No 60
>PHA03164 hypothetical protein; Provisional
Probab=21.61 E-value=1.3e+02 Score=20.34 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033456 60 FAIVIETVCAAVLTVVMA 77 (119)
Q Consensus 60 ~~~~~~l~~S~~L~~~m~ 77 (119)
+-...+++++.+|+.++.
T Consensus 60 FlvLtgLaIamILfiifv 77 (88)
T PHA03164 60 FLVLTGLAIAMILFIIFV 77 (88)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334445555555555543
No 61
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=21.53 E-value=1.9e+02 Score=17.09 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=15.9
Q ss_pred HHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHH
Q 033456 11 GLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGY 46 (119)
Q Consensus 11 a~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~ 46 (119)
|.+..+-|++-..........+. ..+|..+...|.
T Consensus 3 Gil~iv~Gi~~l~~p~~~~~~~~-~i~g~~~i~~Gi 37 (72)
T PF03729_consen 3 GILFIVLGILLLFNPDASLAALA-IILGIWLIISGI 37 (72)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHH
Confidence 34444455555555444433333 444444444444
No 62
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.35 E-value=1.5e+02 Score=18.24 Aligned_cols=18 Identities=28% Similarity=0.408 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033456 32 AGGVGTGLLLVLAGYLSL 49 (119)
Q Consensus 32 iaG~~~G~ll~~ag~~~~ 49 (119)
+.|++++++++++|....
T Consensus 16 igGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 16 IGGLIFAGVLFILGILII 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 467778887777776543
No 63
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=20.12 E-value=5.4e+02 Score=21.80 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=50.6
Q ss_pred HHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhh-----
Q 033456 9 PYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET----- 83 (119)
Q Consensus 9 ~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t----- 83 (119)
.-.....++|+.|..-+=-.|.+.+.+..++..=..+ . .+.+-+.|.. ...-.++....|.|+.++
T Consensus 192 ~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~-----~~~~lP~wl~---~va~~~iG~~IG~~f~~~~l~~~ 262 (352)
T COG3180 192 LLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-G-----ITIQLPAWLL---AVAQALIGALIGSRFDRSILREA 262 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccc-c-----eeeeCCHHHH---HHHHHHHHHHHcccccHHHHHHh
Confidence 3445567788888888877788888777766432211 0 0122233322 233444566667676655
Q ss_pred CCcchHHHHHHHHHHHH
Q 033456 84 SKVMPAGIVAGISALMT 100 (119)
Q Consensus 84 ~K~mPaGl~~~ls~~~~ 100 (119)
+++.|++++..+.....
T Consensus 263 ~r~~~~~~v~ii~l~~~ 279 (352)
T COG3180 263 KRLLPAILVSIIALMAI 279 (352)
T ss_pred HhhcchHHHHHHHHHHH
Confidence 67899999888876643
Done!