Query 033456
Match_columns 119
No_of_seqs 102 out of 329
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 03:16:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2loo_A Transmembrane protein 1 99.9 9.3E-31 3.2E-35 183.8 0.0 97 5-108 12-108 (108)
2 2los_A Transmembrane protein 1 99.9 2E-30 6.9E-35 185.2 0.0 101 4-111 20-120 (121)
3 4g1u_A Hemin transport system 38.7 1.1E+02 0.0038 24.4 7.3 28 28-55 79-106 (357)
4 2lx0_A Membrane fusion protein 28.1 72 0.0024 16.8 3.4 21 88-108 9-29 (32)
5 2jp3_A FXYD domain-containing 17.2 1.2E+02 0.004 18.9 2.9 18 32-49 19-36 (67)
6 2jo1_A Phospholemman; FXYD1, N 16.8 1.2E+02 0.0041 19.1 2.9 18 32-49 18-35 (72)
7 2ks1_B Epidermal growth factor 16.6 1.3E+02 0.0045 17.0 2.8 15 26-40 8-22 (44)
8 2zxe_G FXYD10, phospholemman-l 16.2 1.2E+02 0.0043 19.2 2.9 18 32-49 21-38 (74)
9 2qi9_A Vitamin B12 import syst 15.9 3.9E+02 0.013 20.6 9.9 29 27-55 56-84 (326)
10 2l2t_A Receptor tyrosine-prote 12.5 2.2E+02 0.0076 16.1 4.0 13 27-39 8-20 (44)
No 1
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=99.92 E-value=9.3e-31 Score=183.75 Aligned_cols=97 Identities=26% Similarity=0.438 Sum_probs=87.6
Q ss_pred cchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 033456 5 CFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETS 84 (119)
Q Consensus 5 cl~~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t~ 84 (119)
+++++|++++++||++||+|+||+|||++|+.+|+++.. .+++.|+|++ ++++++++|++|+.+|++||.|||
T Consensus 12 ~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~ll~~---~~~~~~~~~~----~~~l~l~~S~~L~~~m~~R~~~t~ 84 (108)
T 2loo_A 12 LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGY---GAYRVSNDKR----DVKVSLFTAFFLATIMGVRFKRSK 84 (108)
Confidence 489999999999999999999999999999999997644 4455565542 788999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHh
Q 033456 85 KVMPAGIVAGISALMTGFYLYKIA 108 (119)
Q Consensus 85 K~mPaGl~~~ls~~~~~~y~~~~~ 108 (119)
|+||+|+++++|++|++||.|+++
T Consensus 85 K~mPaGl~a~lS~~m~~~y~~~l~ 108 (108)
T 2loo_A 85 KIMPAGLVAGLSLMMILRLVLLLL 108 (108)
Confidence 999999999999999999999874
No 2
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=99.92 E-value=2e-30 Score=185.20 Aligned_cols=101 Identities=30% Similarity=0.467 Sum_probs=89.4
Q ss_pred ccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033456 4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET 83 (119)
Q Consensus 4 fcl~~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t 83 (119)
-.++++|++++++||++||+|+||+|||+||+.+|+++..++ +|.|+|+++ .++++++|++|+.+|+.||.||
T Consensus 20 ~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l~~~~a---~~~~~~~~~----~~l~l~~S~~L~~~mg~R~~~t 92 (121)
T 2los_A 20 HWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGA---YQLSQDPRN----VWVFLATSGTLAGIMGMRFYHS 92 (121)
Confidence 358999999999999999999999999999999999765544 456666543 3578899999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 033456 84 SKVMPAGIVAGISALMTGFYLYKIATGG 111 (119)
Q Consensus 84 ~K~mPaGl~~~ls~~~~~~y~~~~~~~~ 111 (119)
+|+||+|+++++|++|++||.+++++.+
T Consensus 93 ~K~mPaGlva~lS~~m~~~~~~~ll~~~ 120 (121)
T 2los_A 93 GKFMPAGLIAGASLLMVAKVGVSMFNRP 120 (121)
Confidence 9999999999999999999999998744
No 3
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=38.66 E-value=1.1e+02 Score=24.36 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033456 28 TASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (119)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~~~~~~~~~~ 55 (119)
.|=.+.++..|+.+..+|...|...||+
T Consensus 79 lPR~l~a~lvGaaLavsG~~~Q~~~rNP 106 (357)
T 4g1u_A 79 LPRVLLAVVVGCALAVSGTIMQGLFRNP 106 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4778889999999999999988877775
No 4
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=28.14 E-value=72 Score=16.79 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 033456 88 PAGIVAGISALMTGFYLYKIA 108 (119)
Q Consensus 88 PaGl~~~ls~~~~~~y~~~~~ 108 (119)
-+|+++.+..+...|..++.+
T Consensus 9 iaglvalltflafgfwlfkyl 29 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777655
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=17.21 E-value=1.2e+02 Score=18.95 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033456 32 AGGVGTGLLLVLAGYLSL 49 (119)
Q Consensus 32 iaG~~~G~ll~~ag~~~~ 49 (119)
+.|+++++++++.|..+.
T Consensus 19 igGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHH
Confidence 457788887777776544
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=16.76 E-value=1.2e+02 Score=19.14 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033456 32 AGGVGTGLLLVLAGYLSL 49 (119)
Q Consensus 32 iaG~~~G~ll~~ag~~~~ 49 (119)
+.|+++++++++.|..+.
T Consensus 18 iGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 457777777777776544
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=16.56 E-value=1.3e+02 Score=16.97 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=8.0
Q ss_pred CChhHhHHHHHHHHH
Q 033456 26 GSTASLAGGVGTGLL 40 (119)
Q Consensus 26 gS~~SLiaG~~~G~l 40 (119)
.+.+++.+|++.|.+
T Consensus 8 s~~~~IA~gVVgGv~ 22 (44)
T 2ks1_B 8 PKIPSIATGMVGALL 22 (44)
T ss_dssp SCSSSSTHHHHHHHH
T ss_pred CCcceEEeehhHHHH
Confidence 345665556555443
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=16.21 E-value=1.2e+02 Score=19.16 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033456 32 AGGVGTGLLLVLAGYLSL 49 (119)
Q Consensus 32 iaG~~~G~ll~~ag~~~~ 49 (119)
+.|+++++++++.|..+.
T Consensus 21 igGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHHH
Confidence 568888888888887665
No 9
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Probab=15.90 E-value=3.9e+02 Score=20.61 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=23.2
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033456 27 STASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (119)
Q Consensus 27 S~~SLiaG~~~G~ll~~ag~~~~~~~~~~ 55 (119)
-.|-+++++..|+.+..+|...+...+|+
T Consensus 56 RlPR~l~a~lvG~~La~sG~~~Q~l~rNp 84 (326)
T 2qi9_A 56 RLPRTLAVLLVGAALAISGAVMQALFENP 84 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 35778889999999999998877666665
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=12.51 E-value=2.2e+02 Score=16.06 Aligned_cols=13 Identities=46% Similarity=0.544 Sum_probs=6.1
Q ss_pred ChhHhHHHHHHHH
Q 033456 27 STASLAGGVGTGL 39 (119)
Q Consensus 27 S~~SLiaG~~~G~ 39 (119)
..+++.+|++-|.
T Consensus 8 ~~~aIA~gVVgGv 20 (44)
T 2l2t_A 8 RTPLIAAGVIGGL 20 (44)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CcceEEEeehHHH
Confidence 3455444554444
Done!