Query 033456
Match_columns 119
No_of_seqs 102 out of 329
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 03:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033456.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033456hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l7va_ f.22.1.1 (A:) ABC tran 62.1 14 0.00099 27.2 7.3 28 28-55 57-84 (324)
2 d1v54b2 f.17.2.1 (B:1-90) Mito 28.8 13 0.00098 22.3 1.9 26 2-27 24-49 (90)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 10.9 39 0.0028 20.6 1.0 21 2-22 35-55 (107)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 5.8 1.2E+02 0.0086 17.8 1.5 17 2-18 29-45 (100)
5 d1v54c_ f.25.1.1 (C:) Mitochon 5.1 4.6E+02 0.034 17.6 5.6 33 8-40 18-50 (259)
6 d2e74g1 f.23.26.1 (G:9-35) Pet 4.5 2.2E+02 0.016 13.1 3.4 10 46-55 15-24 (27)
7 d1kqfb2 f.23.22.1 (B:246-290) 4.1 3.1E+02 0.023 14.2 4.1 29 88-117 14-42 (45)
8 d1ttka_ g.3.6.1 (A:) Conotoxin 3.8 1.2E+02 0.0087 14.0 0.3 7 1-7 12-18 (26)
9 d2gena2 a.121.1.1 (A:76-193) P 3.8 3.8E+02 0.027 14.7 4.1 34 85-118 69-102 (118)
10 d1otsa_ f.20.1.1 (A:) Clc chlo 3.5 5.6E+02 0.041 18.2 4.3 45 28-76 342-386 (444)
No 1
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=62.13 E-value=14 Score=27.24 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 033456 28 TASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (119)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~~~~~~~~~~ 55 (119)
.|-+++++..|+.+..+|+..|...||+
T Consensus 57 lPR~l~a~l~Ga~La~sG~~lQ~~~rNp 84 (324)
T d1l7va_ 57 LPRTLAVLLVGAALAISGAVMQALFENP 84 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4778899999999999999988888875
No 2
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.77 E-value=13 Score=22.31 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=19.3
Q ss_pred ccccchHHHHHHHHhhhhhHhhhcCC
Q 033456 2 HDFCFTIPYGLILIGGGIVGFAKKGS 27 (119)
Q Consensus 2 ~Dfcl~~~ya~ll~~GGi~Gy~k~gS 27 (119)
||+++.+...++..+..++.+...+.
T Consensus 24 Hd~~m~i~~~I~~~V~~~~~~~~~~~ 49 (90)
T d1v54b2 24 HDHTLMIVFLISSLVLYIISLMLTTK 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89888887777777777776666554
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=10.95 E-value=39 Score=20.57 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=11.1
Q ss_pred ccccchHHHHHHHHhhhhhHh
Q 033456 2 HDFCFTIPYGLILIGGGIVGF 22 (119)
Q Consensus 2 ~Dfcl~~~ya~ll~~GGi~Gy 22 (119)
||+-+.+....++.+.|++-|
T Consensus 35 h~~v~~i~~~I~~~V~~~~~~ 55 (107)
T d3ehbb2 35 DHFVLYIITAVTIFVCLLLLI 55 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554443
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.78 E-value=1.2e+02 Score=17.77 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=6.8
Q ss_pred ccccchHHHHHHHHhhh
Q 033456 2 HDFCFTIPYGLILIGGG 18 (119)
Q Consensus 2 ~Dfcl~~~ya~ll~~GG 18 (119)
||+-+.+....++.+.+
T Consensus 29 ~~~v~~i~~~I~~~V~~ 45 (100)
T d3dtub2 29 DGFILVIIAAITIFVTL 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444433333
No 5
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.07 E-value=4.6e+02 Score=17.58 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHH
Q 033456 8 IPYGLILIGGGIVGFAKKGSTASLAGGVGTGLL 40 (119)
Q Consensus 8 ~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~l 40 (119)
...+.+...-|...|...++...++.|+..-..
T Consensus 18 ~s~~~~~~~~g~~~~~~~~~~~~~~~gl~~~~~ 50 (259)
T d1v54c_ 18 GALSALLMTSGLTMWFHFNSMTLLMIGLTTNML 50 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456777777888889998888888887665443
No 6
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.51 E-value=2.2e+02 Score=13.12 Aligned_cols=10 Identities=10% Similarity=0.580 Sum_probs=4.8
Q ss_pred HHHHHHhhhc
Q 033456 46 YLSLKAFEKK 55 (119)
Q Consensus 46 ~~~~~~~~~~ 55 (119)
|..+|.++++
T Consensus 15 ~aayqqykrp 24 (27)
T d2e74g1 15 YAAYQQYKRP 24 (27)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHhcCC
Confidence 3445555544
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.07 E-value=3.1e+02 Score=14.18 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 033456 88 PAGIVAGISALMTGFYLYKIATGGNHIPAK 117 (119)
Q Consensus 88 PaGl~~~ls~~~~~~y~~~~~~~~~~~~~~ 117 (119)
|.|.+.....+ ++-+.+.+-.|||+....
T Consensus 14 pl~~~~~~~~~-~~~~fHYv~vGPn~v~ee 42 (45)
T d1kqfb2 14 PLAAAGFIATF-AGLIFHYIGIGPNKEVDD 42 (45)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHCCBCSCSS
T ss_pred HHHHHHHHHHH-HHHHHhhheeCCCccccc
Confidence 55444433333 333445566777754433
No 8
>d1ttka_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus magus), M VIIa [TaxId: 6492]}
Probab=3.75 E-value=1.2e+02 Score=13.95 Aligned_cols=7 Identities=43% Similarity=0.676 Sum_probs=4.1
Q ss_pred Cccccch
Q 033456 1 MHDFCFT 7 (119)
Q Consensus 1 ~~Dfcl~ 7 (119)
|+|-|.+
T Consensus 12 mydcctg 18 (26)
T d1ttka_ 12 MYDCCTG 18 (26)
T ss_dssp TCCCTTS
T ss_pred HHHhccC
Confidence 5666643
No 9
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.75 E-value=3.8e+02 Score=14.66 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 033456 85 KVMPAGIVAGISALMTGFYLYKIATGGNHIPAKA 118 (119)
Q Consensus 85 K~mPaGl~~~ls~~~~~~y~~~~~~~~~~~~~~~ 118 (119)
|.+|+-+++.+-..++-..+...+.++.+.|..|
T Consensus 69 r~~~~~~~~~~i~G~~~~~~~~wl~~~~~~~~e~ 102 (118)
T d2gena2 69 REMPDDCFASVVIGPAHDLARQWLAGRTRVALAD 102 (118)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTTCCSSCGGG
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHcCCCCCCHHH
No 10
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=3.52 E-value=5.6e+02 Score=18.16 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 033456 28 TASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVM 76 (119)
Q Consensus 28 ~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m 76 (119)
.||+..|..+|.++.. ..+......+.++.......+++.++.++
T Consensus 342 ~P~l~iGa~~G~~~~~----~~~~~~~~~~~~~~~~alvGmaa~~a~~~ 386 (444)
T d1otsa_ 342 APMLALGTVLGTAFGM----VAVELFPQYHLEAGTFAIAGMGALLAASI 386 (444)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHCGGGTCCHHHHHHHHHTHHHHHTS
T ss_pred hHHHHHHHHHHHHHHH----HHHHhCCcccCCHHHHHHHHHHHHHHHHH
Done!