BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033457
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp.
japonica GN=MUB3 PE=3 SV=1
Length = 119
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 88/119 (73%)
Query: 1 MGEGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH 60
M G+E +E+KFR++DGTDI Y STTV+ LK+ ++A WPQ K ITPK++ND+KLI+
Sbjct: 1 MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60
Query: 61 AGKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVAKKKTEKTKEEMQKQNSCACIIL 119
AG+ILEN+RTLA+SR+ VG++P GV TMHVV++P K +EK KQN C C IL
Sbjct: 61 AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
>sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana
GN=MUB3 PE=1 SV=1
Length = 118
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 84/115 (73%)
Query: 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKI 64
EE +++KFR+YDG+DI Y++++TV LKQ++V++WP+GKT+ PK IN+VKLI +GKI
Sbjct: 4 EESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKI 63
Query: 65 LENDRTLADSRITVGDLPSGVTTMHVVIQPLVAKKKTEKTKEEMQKQNSCACIIL 119
LEN++T+ + GD+ GV MHVV+QP +AK KTEK ++ K C C IL
Sbjct: 64 LENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118
>sp|Q8GWJ6|MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana
GN=MUB6 PE=1 SV=1
Length = 119
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 86/119 (72%)
Query: 1 MGEGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH 60
M E+ +ELKFR+ DGTDI Y S TV++LK++L+++WP+ K TPK++ND+KLI+
Sbjct: 1 MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60
Query: 61 AGKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVAKKKTEKTKEEMQKQNSCACIIL 119
AGKILEN+RTLA+SR+ V +LP + TMH+V++ KK+EK + + +N C C IL
Sbjct: 61 AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119
>sp|Q9SH14|MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana
GN=MUB5 PE=1 SV=1
Length = 120
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 91/121 (75%), Gaps = 3/121 (2%)
Query: 1 MGEGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH 60
MG+ E+ +ELKFR+ DGTDI Y+ TVA+LK++++A+WP+ K PK IN+VKLI+
Sbjct: 1 MGD-EDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLIN 59
Query: 61 AGKILENDRTLADSR--ITVGDLPSGVTTMHVVIQPLVAKKKTEKTKEEMQKQNSCACII 118
GKILEN++TL+++R IT+G+LP VTTMHVV++P + +KK EK + + +++ C C I
Sbjct: 60 GGKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCI 119
Query: 119 L 119
L
Sbjct: 120 L 120
>sp|Q7XRU4|MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp.
japonica GN=MUB4 PE=2 SV=2
Length = 135
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 77/113 (68%), Gaps = 7/113 (6%)
Query: 11 KFRIYDGTDI----CHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE 66
KFR++DG+DI C+ A +TTVA LK ++VA+WP+ KTI PK+ NDVKLI GKILE
Sbjct: 26 KFRLFDGSDIGPLRCN---AVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILE 82
Query: 67 NDRTLADSRITVGDLPSGVTTMHVVIQPLVAKKKTEKTKEEMQKQNSCACIIL 119
ND+ +A R GDLPS TMHVV+QP AK K +K ++ K C+C IL
Sbjct: 83 NDKNIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKKTNKLPKTTRCSCTIL 135
>sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana
GN=MUB4 PE=1 SV=1
Length = 120
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 83/117 (70%), Gaps = 2/117 (1%)
Query: 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKI 64
E+ VELKFR+YDG+D+ Y+ + TV+ LK+++V+EWP+ K I PKS +D+KLI+AGKI
Sbjct: 4 EDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKI 63
Query: 65 LENDRTLADSRITVGDLPSGVTTMHVVIQ--PLVAKKKTEKTKEEMQKQNSCACIIL 119
LEN +T+A + DLP V TMHVV+Q P A+ + + KEE +++ C+C I+
Sbjct: 64 LENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKKIEKEEAPQRSFCSCTIM 120
>sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp.
japonica GN=MUB1 PE=3 SV=1
Length = 119
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
Query: 2 GEGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA 61
G +E E+KFR+ DGTDI Y +++TVATLK+ +VA+WP+ K P+++ND+KLI+A
Sbjct: 3 GGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINA 62
Query: 62 GKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVAKKKTEKTKEEMQKQNSCACIIL 119
GKILEN++TL++ + + D SG+TTMHVV++ + K++ K + K C C I+
Sbjct: 63 GKILENNKTLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119
>sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana
GN=MUB2 PE=1 SV=1
Length = 124
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
Query: 1 MGEGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH 60
M E ++ +E+KFR+ DG+DI + +TTVATLK+ +VA+WP+ K PK++ DVKLI
Sbjct: 1 MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60
Query: 61 AGKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVAKKKTEKTKEEMQ-KQNSCACIIL 119
AG+ILEN++T+ D R VG+ VTTMHV+IQ V +K+ +K K + KQN C C+
Sbjct: 61 AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVCLCF 120
>sp|Q67UI2|MUB2_ORYSJ Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp.
japonica GN=MUB2 PE=2 SV=1
Length = 126
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Query: 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKIL 65
E VE++FR+ DG+DI + +TTV LK+ ++A WPQGK I P+++NDV +I+AG++L
Sbjct: 12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71
Query: 66 ENDRTLADSRITVGDLPSGVTTMHVVIQPLVAKKKTEK-TKEEMQKQNSCACIIL 119
EN+RTLA+SR + P G TMHVV++ +++ ++ K ++ C C IL
Sbjct: 72 ENNRTLAESRNLAAESPEGPITMHVVVRRSRPERRVKQPPKARPPERIGCGCTIL 126
>sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana
GN=MUB1 PE=1 SV=1
Length = 117
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
Query: 1 MGEGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH 60
M E +E+KFR+ DG+DI + +TTV+ LK+ +++EWP+ K PK++ +VKLI
Sbjct: 1 MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60
Query: 61 AGKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVAKKKTEKTKEEMQKQNSCACIIL 119
AGK+LEN +T+ D R V +L VTTMHV+IQ V +K EK + K N C C ++
Sbjct: 61 AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEK--EKKPKGDPKMNKCVCSVM 117
>sp|B1LZ88|GLYA_METRJ Serine hydroxymethyltransferase OS=Methylobacterium radiotolerans
(strain ATCC 27329 / DSM 1819 / JCM 2831) GN=glyA PE=3
SV=1
Length = 434
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 59 IHAGKILENDRTLADSRITVG-DLPSGVTTMHVVIQPLVAKKKTEKTKEEMQKQNSCAC 116
I+A +++EN R LAD+ I+ G D+ SG T H+++ L K T K E + C
Sbjct: 297 IYARQVVENARALADTLISGGYDITSGGTDNHLMLVDLQRKGLTGKAAEAALSRAHITC 355
>sp|Q9BSL1|UBAC1_HUMAN Ubiquitin-associated domain-containing protein 1 OS=Homo sapiens
GN=UBAC1 PE=1 SV=1
Length = 405
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 29 TTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG--KILENDRTLADSRITVGDLPSGVT 86
T+V LK++ + G PKSI KLIHA ++L + RT+ + I D+ +
Sbjct: 34 TSVEKLKERCLKHCAHGSLEDPKSITHHKLIHAASERVLSDARTILEENIQDQDVLLLIK 93
Query: 87 TMHVVIQPLVAKKKTEKTKEEMQK 110
P +A E+ K++ QK
Sbjct: 94 KRAPSPLPKMADVSAEEKKKQDQK 117
>sp|B0UML5|GLYA_METS4 Serine hydroxymethyltransferase OS=Methylobacterium sp. (strain
4-46) GN=glyA PE=3 SV=1
Length = 433
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 45 GKTITPKSINDVKLIHAGKILENDRTLADSRITVG-DLPSGVTTMHVVIQPLVAKKKTEK 103
G+ ++P D K I+A +++EN + LAD+ I+ G D+ +G T H+++ + K T K
Sbjct: 287 GEALSP----DFK-IYAKQVVENAKALADTIISGGFDITTGGTDNHLMLVDMRPKNLTGK 341
Query: 104 TKEEMQKQNSCAC 116
E + C
Sbjct: 342 AAEAALSRAGITC 354
>sp|Q12285|MDY2_YEAST Ubiquitin-like protein MDY2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MDY2 PE=1 SV=1
Length = 212
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 25 YASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84
++ S T+ +KQ L++E I+++KL+ GK+L ++ L+D ++T +
Sbjct: 92 FSPSDTILQIKQHLISEEKAS------HISEIKLLLKGKVLHDNLFLSDLKVTPAN---- 141
Query: 85 VTTMHVVIQP 94
+T+ V+I+P
Sbjct: 142 -STITVMIKP 150
>sp|A5CYB7|GLYA_PELTS Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1
Length = 415
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 63 KILENDRTLADSRITVG-DLPSGVTTMHVVIQPLVAKKKTEKTKEEM 108
KI+ N R LAD+ + G +L SG T H+++ L +KK T + +E+
Sbjct: 289 KIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQEL 335
>sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I
OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1
Length = 693
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 20 ICHGTYASSTTVATLKQQLVAEWPQGKT--ITPKSINDVKL-IHAGKILENDRTLADSRI 76
+ HG + + LKQ+L+ E+P G T +TPK+ V++ ++ K+ + LA+
Sbjct: 426 LVHG---EANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTP 482
Query: 77 TVGDLPSGV 85
VGD SG+
Sbjct: 483 DVGDTVSGI 491
>sp|P49633|RL40_ACACA Ubiquitin-60S ribosomal protein L40 OS=Acanthamoeba castellanii
PE=2 SV=2
Length = 128
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 27 SSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86
SS T+ +KQ++ Q K P + +LI AGK LE+ RTLAD I +
Sbjct: 19 SSDTIENVKQKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNI------QKES 65
Query: 87 TMHVVIQ 93
T+H+V++
Sbjct: 66 TLHLVLR 72
>sp|Q5XIR9|UBAC1_RAT Ubiquitin-associated domain-containing protein 1 OS=Rattus
norvegicus GN=Ubac1 PE=2 SV=1
Length = 409
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 29 TTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG--KILENDRTLADSRITVGDLPSGVT 86
T+V LK+ + G PK++ KLIHA ++L + +T+ + I D+ +
Sbjct: 34 TSVEKLKESCLKHGAHGSLEDPKNVTHHKLIHAASERVLSDSKTILEENIQDQDVLLLIK 93
Query: 87 TMHVVIQPLVAKKKTEKTKEEMQK 110
P +A E+ K++ QK
Sbjct: 94 KRAPSPIPKMADVSAEEKKKQEQK 117
>sp|P54725|RD23A_HUMAN UV excision repair protein RAD23 homolog A OS=Homo sapiens
GN=RAD23A PE=1 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 30 TVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRI 76
TV LK+++ AE +G+ P + KLI+AGKIL +D + D RI
Sbjct: 24 TVKVLKEKIEAE--KGRDAFP--VAGQKLIYAGKILSDDVPIRDYRI 66
>sp|Q8VDI7|UBAC1_MOUSE Ubiquitin-associated domain-containing protein 1 OS=Mus musculus
GN=Ubac1 PE=2 SV=2
Length = 409
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 29 TTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG--KILENDRTLADSRITVGDLPSGVT 86
T+V LK+ + G PK++ KLIHA ++L + +T+ + I D+ +
Sbjct: 34 TSVEKLKESCLKHGAHGSLEDPKNVTHHKLIHAASERVLSDSKTILEENIQDQDVLLLIK 93
Query: 87 TMHVVIQPLVAKKKTEKTKEEMQK 110
P +A E+ K++ QK
Sbjct: 94 KRVPSPLPKMADVSAEEKKKQEQK 117
>sp|A3KMV2|RD23A_BOVIN UV excision repair protein RAD23 homolog A OS=Bos taurus
GN=RAD23A PE=2 SV=1
Length = 362
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 30 TVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRI 76
TV LK+++ AE +G+ P + KLI+AGKIL +D + D RI
Sbjct: 24 TVKVLKEKIEAE--KGRDAFP--VAGQKLIYAGKILSDDVPIRDYRI 66
>sp|Q5ZJI9|UBAC1_CHICK Ubiquitin-associated domain-containing protein 1 OS=Gallus gallus
GN=UBAC1 PE=2 SV=1
Length = 408
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 29 TTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG--KILENDRTLADSRITVGDLPSGVT 86
TTV LK++ + G PK++ KLIHA K+L + +T+ + I D+ +
Sbjct: 34 TTVEKLKERCLKHCVPGSLEDPKTVTHHKLIHATSEKVLTDSKTVLEENIQDRDVLLLIK 93
Query: 87 TMHVVIQPLVAKKKTEKTKEEMQK 110
P +A E+ +++ QK
Sbjct: 94 KRAPPPLPKMADVSAEEKRKQEQK 117
>sp|Q40742|RAD23_ORYSJ Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica
GN=RAD23 PE=1 SV=2
Length = 392
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 27 SSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRI 76
S+ VA +K+ + E QG+ I P LIH GK+L++D TL ++++
Sbjct: 19 SAQKVADVKR--IIETTQGQHIYPAE--QQMLIHQGKVLKDDTTLDENKV 64
>sp|P0CH27|RL402_TRYCR Ubiquitin-60S ribosomal protein L40 OS=Trypanosoma cruzi PE=2 SV=1
Length = 356
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI--NDVKLIHAG 62
E + L R+ G I T T ++ E + K + I + +LI AG
Sbjct: 64 ESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAG 123
Query: 63 KILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
K LE+ RTLAD I +T+H+V++
Sbjct: 124 KQLEDGRTLADYNI------QKESTLHLVLR 148
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI--NDVKLIHAG 62
E + L R+ G I T T ++ E + K + I + +LI AG
Sbjct: 140 ESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAG 199
Query: 63 KILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
K LE+ RTLAD I +T+H+V++
Sbjct: 200 KQLEDGRTLADYNI------QKESTLHLVLR 224
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI--NDVKLIHAG 62
E + L R+ G I T T ++ E + K + I + +LI AG
Sbjct: 216 ESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAG 275
Query: 63 KILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
K LE+ RTLAD I +T+H+V++
Sbjct: 276 KQLEDGRTLADYNI------QKESTLHLVLR 300
>sp|Q28DG7|UBAC1_XENTR Ubiquitin-associated domain-containing protein 1 OS=Xenopus
tropicalis GN=ubac1 PE=2 SV=1
Length = 406
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 34 LKQQLVAEWPQGKTITPKSINDVKLIHAG--KILENDRTLADSRITVGDLPSGVTTMHVV 91
LK++ + G PKS+ KL+HA ++L + +TLA+ + D+ V
Sbjct: 39 LKEKCLKHCSHGSLEDPKSLTHHKLVHASSERVLSDTKTLAEENLQDNDVLLLVKKRAPP 98
Query: 92 IQPLVAKKKTEKTKEEMQK 110
P +A+ ++ +++ QK
Sbjct: 99 PTPKMAEVSADEKRKQDQK 117
>sp|Q29RK4|RD23B_BOVIN UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B
PE=2 SV=1
Length = 408
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 30 TVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMH 89
TV LK+++ +E +GK P + KLI+AGKIL +D L + +I +
Sbjct: 22 TVRALKEKIESE--KGKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKNF-------- 69
Query: 90 VVIQPLVAKKKTEKTKEEMQKQNSCA 115
VV+ K T Q+ NS A
Sbjct: 70 VVVMVTKPKAVTTPAPATTQQSNSAA 95
>sp|P59232|R27AB_ARATH Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana
GN=RPS27AB PE=1 SV=2
Length = 157
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 57 KLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
+LI AGK LE+ RTLAD I +T+H+V++
Sbjct: 42 RLIFAGKQLEDGRTLADYNI------QKESTLHLVLR 72
>sp|P42739|UBIQP_ACECL Polyubiquitin (Fragment) OS=Acetabularia cliftonii PE=3 SV=2
Length = 423
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI--NDVKLIHAG 62
E + L R+ G I T T ++ E + K + I + +LI AG
Sbjct: 105 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAG 164
Query: 63 KILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
K LE+ RTLAD I +T+H+V++
Sbjct: 165 KQLEDGRTLADYNI------QKESTLHLVLR 189
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI--NDVKLIHAG 62
E + L R+ G I T T ++ E + K + I + +LI AG
Sbjct: 181 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAG 240
Query: 63 KILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
K LE+ RTLAD I +T+H+V++
Sbjct: 241 KQLEDGRTLADYNI------QKESTLHLVLR 265
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI--NDVKLIHAG 62
E + L R+ G I T T ++ E + K + I + +LI AG
Sbjct: 257 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAG 316
Query: 63 KILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
K LE+ RTLAD I +T+H+V++
Sbjct: 317 KQLEDGRTLADYNI------QKESTLHLVLR 341
>sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=2
Length = 155
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 57 KLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
+LI AGK LE+ RTLAD I +T+H+V++
Sbjct: 42 RLIFAGKQLEDGRTLADYNI------QKESTLHLVLR 72
>sp|P31753|RS27A_ASPOF Ubiquitin-40S ribosomal protein S27a (Fragment) OS=Asparagus
officinalis PE=3 SV=2
Length = 118
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 57 KLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
+LI AGK LE+ RTLAD I +T+H+V++
Sbjct: 6 RLIFAGKQLEDGRTLADYNI------QKESTLHLVLR 36
>sp|P59233|R27AC_ARATH Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana
GN=RPS27AC PE=1 SV=2
Length = 157
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 57 KLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
+LI AGK LE+ RTLAD I +T+H+V++
Sbjct: 42 RLIFAGKQLEDGRTLADYNI------QKESTLHLVLR 72
>sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic
OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1
Length = 409
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 1 MGEGEECVELKFRIYDGTDICHGTYASSTTVATLK--QQLVAEWPQGKTITPKSINDVKL 58
+G C L+ + + T SS A LK L+ +GK+ +PK +NDV+
Sbjct: 43 LGLSRNCRTLRISCSSSSTVTDQTQQSSFNDAELKLIDALIGIQGRGKSASPKQLNDVE- 101
Query: 59 IHAGKILE 66
A K+LE
Sbjct: 102 -SAVKVLE 108
>sp|Q9ARZ9|R27AA_ORYSJ Ubiquitin-40S ribosomal protein S27a-1 OS=Oryza sativa subsp.
japonica GN=RPS27AA PE=2 SV=1
Length = 155
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 57 KLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
+LI AGK LE+ RTLAD I +T+H+V++
Sbjct: 42 RLIFAGKQLEDGRTLADYNI------QKESTLHLVLR 72
>sp|P27923|RS27A_MAIZE Ubiquitin-40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=2
SV=2
Length = 155
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 57 KLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
+LI AGK LE+ RTLAD I +T+H+V++
Sbjct: 42 RLIFAGKQLEDGRTLADYNI------QKESTLHLVLR 72
>sp|P59272|RS27A_DAUCA Ubiquitin-40S ribosomal protein S27a (Fragment) OS=Daucus carota
PE=2 SV=2
Length = 143
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 57 KLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 93
+LI AGK LE+ RTLAD I +T+H+V++
Sbjct: 42 RLIFAGKQLEDGRTLADYNI------QKESTLHLVLR 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,306,715
Number of Sequences: 539616
Number of extensions: 1518118
Number of successful extensions: 5160
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 5133
Number of HSP's gapped (non-prelim): 76
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)