Query 033457
Match_columns 119
No_of_seqs 128 out of 1020
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01814 NTGP5 Ubiquitin-like N 100.0 5.7E-33 1.2E-37 190.4 7.1 112 5-116 2-113 (113)
2 PF13881 Rad60-SLD_2: Ubiquiti 100.0 3.4E-32 7.3E-37 187.4 10.9 111 6-117 1-111 (111)
3 cd01807 GDX_N ubiquitin-like d 99.8 5.6E-19 1.2E-23 112.7 7.1 74 8-95 1-74 (74)
4 cd01794 DC_UbP_C dendritic cel 99.7 3E-18 6.4E-23 109.0 6.1 69 10-92 1-69 (70)
5 cd01793 Fubi Fubi ubiquitin-li 99.7 6.9E-18 1.5E-22 107.7 7.1 73 9-97 2-74 (74)
6 cd01797 NIRF_N amino-terminal 99.7 1E-17 2.2E-22 108.5 6.8 76 8-96 1-77 (78)
7 cd01802 AN1_N ubiquitin-like d 99.7 3.3E-17 7.3E-22 111.3 7.8 77 6-96 26-102 (103)
8 cd01790 Herp_N Homocysteine-re 99.7 1.7E-17 3.7E-22 108.0 6.0 75 7-92 1-78 (79)
9 cd01810 ISG15_repeat2 ISG15 ub 99.7 3.2E-17 6.9E-22 104.6 6.5 73 10-96 1-73 (74)
10 PTZ00044 ubiquitin; Provisiona 99.7 4.7E-17 1E-21 103.7 7.0 75 8-96 1-75 (76)
11 cd01806 Nedd8 Nebb8-like ubiq 99.7 8.2E-17 1.8E-21 102.0 7.9 75 8-96 1-75 (76)
12 cd01798 parkin_N amino-termina 99.7 4.5E-17 9.7E-22 102.7 6.3 70 10-93 1-70 (70)
13 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.1E-16 2.5E-21 102.5 6.5 71 8-92 2-72 (73)
14 cd01808 hPLIC_N Ubiquitin-like 99.7 1.9E-16 4.2E-21 100.2 6.4 71 8-93 1-71 (71)
15 cd01803 Ubiquitin Ubiquitin. U 99.7 3E-16 6.4E-21 99.4 7.2 75 8-96 1-75 (76)
16 cd01804 midnolin_N Ubiquitin-l 99.7 3.6E-16 7.8E-21 101.0 7.3 74 8-96 2-75 (78)
17 cd01805 RAD23_N Ubiquitin-like 99.7 4.5E-16 9.7E-21 99.3 7.5 74 8-95 1-76 (77)
18 PF00240 ubiquitin: Ubiquitin 99.7 3.9E-16 8.4E-21 97.5 6.7 69 13-95 1-69 (69)
19 cd01809 Scythe_N Ubiquitin-lik 99.6 5.2E-16 1.1E-20 97.4 6.8 72 8-93 1-72 (72)
20 cd01792 ISG15_repeat1 ISG15 ub 99.6 9.7E-16 2.1E-20 99.2 6.2 73 8-94 3-77 (80)
21 cd01800 SF3a120_C Ubiquitin-li 99.6 1.2E-15 2.6E-20 97.9 6.1 70 16-99 6-75 (76)
22 cd01796 DDI1_N DNA damage indu 99.6 1.7E-15 3.8E-20 96.1 6.0 67 10-90 1-69 (71)
23 KOG0005 Ubiquitin-like protein 99.6 1.9E-15 4.2E-20 93.3 3.3 69 9-91 2-70 (70)
24 cd01812 BAG1_N Ubiquitin-like 99.6 1.2E-14 2.6E-19 91.1 6.4 70 8-92 1-70 (71)
25 KOG0004 Ubiquitin/40S ribosoma 99.5 5.9E-15 1.3E-19 106.1 4.4 82 10-105 3-84 (156)
26 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 1E-14 2.2E-19 94.1 3.9 54 27-93 19-75 (75)
27 cd01763 Sumo Small ubiquitin-r 99.5 1.1E-13 2.4E-18 91.0 8.5 78 5-96 9-86 (87)
28 KOG0010 Ubiquitin-like protein 99.5 2.1E-14 4.7E-19 118.5 5.6 77 7-98 15-91 (493)
29 cd01813 UBP_N UBP ubiquitin pr 99.5 7.9E-14 1.7E-18 89.4 6.1 68 9-91 2-72 (74)
30 KOG0003 Ubiquitin/60s ribosoma 99.5 3E-15 6.5E-20 102.2 -1.2 68 16-97 9-76 (128)
31 TIGR00601 rad23 UV excision re 99.4 3E-13 6.5E-18 109.9 7.2 74 8-95 1-77 (378)
32 smart00213 UBQ Ubiquitin homol 99.4 5.9E-13 1.3E-17 81.0 5.3 61 8-77 1-61 (64)
33 cd01799 Hoil1_N Ubiquitin-like 99.3 3.8E-12 8.2E-17 81.9 6.4 71 8-92 3-74 (75)
34 cd01769 UBL Ubiquitin-like dom 99.2 2.7E-11 5.8E-16 74.5 5.7 67 12-92 2-68 (69)
35 cd01795 USP48_C USP ubiquitin- 99.2 3.8E-11 8.3E-16 81.1 5.1 64 21-97 17-81 (107)
36 PF11976 Rad60-SLD: Ubiquitin- 99.2 9.9E-11 2.1E-15 73.6 5.8 71 8-92 1-72 (72)
37 cd01789 Alp11_N Ubiquitin-like 99.1 8.5E-10 1.8E-14 72.2 7.7 74 8-94 2-82 (84)
38 KOG0011 Nucleotide excision re 99.0 3.3E-10 7.1E-15 90.1 5.9 74 8-94 1-76 (340)
39 KOG4248 Ubiquitin-like protein 99.0 4.9E-10 1.1E-14 99.2 5.3 74 9-97 4-77 (1143)
40 PF10302 DUF2407: DUF2407 ubiq 99.0 1.8E-09 4E-14 72.7 6.5 88 10-118 3-94 (97)
41 KOG0001 Ubiquitin and ubiquiti 98.8 6.8E-08 1.5E-12 58.6 8.0 70 12-95 4-73 (75)
42 PF14560 Ubiquitin_2: Ubiquiti 98.6 1.2E-07 2.5E-12 62.0 6.3 73 8-93 2-83 (87)
43 PLN02560 enoyl-CoA reductase 98.6 7.8E-08 1.7E-12 76.5 6.3 69 9-90 2-80 (308)
44 cd01788 ElonginB Ubiquitin-lik 98.6 1.1E-07 2.5E-12 65.6 5.6 78 8-94 3-81 (119)
45 cd01801 Tsc13_N Ubiquitin-like 98.4 3.4E-07 7.4E-12 58.6 4.4 52 26-90 20-74 (77)
46 KOG0006 E3 ubiquitin-protein l 98.4 4.3E-07 9.4E-12 72.7 4.5 74 8-94 3-77 (446)
47 cd00196 UBQ Ubiquitin-like pro 98.3 2.6E-06 5.6E-11 48.7 5.7 67 12-92 2-68 (69)
48 PF00789 UBX: UBX domain; Int 98.3 5.3E-06 1.2E-10 53.2 7.5 75 2-90 1-80 (82)
49 PF11543 UN_NPL4: Nuclear pore 98.2 1.6E-06 3.5E-11 56.4 4.0 70 6-90 3-77 (80)
50 cd01770 p47_UBX p47-like ubiqu 97.4 0.00079 1.7E-08 43.5 6.6 66 5-77 2-70 (79)
51 KOG4495 RNA polymerase II tran 97.4 0.00014 3.1E-09 49.1 2.8 61 8-77 3-65 (110)
52 cd01811 OASL_repeat1 2'-5' oli 97.4 0.00086 1.9E-08 43.3 6.2 61 8-77 1-66 (80)
53 smart00166 UBX Domain present 97.4 0.00094 2E-08 42.8 6.3 68 5-84 2-74 (80)
54 KOG1769 Ubiquitin-like protein 97.2 0.0029 6.2E-08 42.8 7.6 74 6-93 19-92 (99)
55 cd01774 Faf1_like2_UBX Faf1 ik 97.2 0.0028 6.2E-08 41.5 7.2 67 5-84 2-78 (85)
56 KOG1872 Ubiquitin-specific pro 97.2 0.00095 2.1E-08 55.8 5.9 72 9-95 5-77 (473)
57 cd01767 UBX UBX (ubiquitin reg 97.2 0.0022 4.8E-08 40.7 6.4 62 7-77 2-68 (77)
58 KOG0013 Uncharacterized conser 97.1 0.00038 8.2E-09 52.9 2.5 72 7-90 145-217 (231)
59 cd01772 SAKS1_UBX SAKS1-like U 97.1 0.0044 9.5E-08 39.8 7.0 67 5-84 2-73 (79)
60 KOG4583 Membrane-associated ER 97.0 3.5E-05 7.7E-10 62.0 -3.6 83 5-97 7-91 (391)
61 PF08817 YukD: WXG100 protein 96.8 0.0047 1E-07 39.5 5.5 76 7-90 2-78 (79)
62 cd01771 Faf1_UBX Faf1 UBX doma 96.6 0.017 3.7E-07 37.4 7.2 68 4-84 1-73 (80)
63 PF15044 CLU_N: Mitochondrial 95.5 0.026 5.6E-07 36.2 4.0 57 25-94 1-59 (76)
64 cd01773 Faf1_like1_UBX Faf1 ik 95.1 0.22 4.8E-06 32.5 7.4 67 5-84 3-74 (82)
65 PF13019 Telomere_Sde2: Telome 95.0 0.21 4.6E-06 36.6 7.9 82 8-98 1-89 (162)
66 KOG3493 Ubiquitin-like protein 94.9 0.007 1.5E-07 38.1 0.0 56 17-84 11-66 (73)
67 PF09379 FERM_N: FERM N-termin 94.5 0.3 6.4E-06 30.5 6.9 71 12-93 1-77 (80)
68 COG5227 SMT3 Ubiquitin-like pr 94.1 0.23 5E-06 33.3 5.7 61 9-77 24-86 (103)
69 COG5417 Uncharacterized small 94.0 0.57 1.2E-05 30.3 7.3 69 8-84 7-76 (81)
70 PF06234 TmoB: Toluene-4-monoo 92.4 2.1 4.5E-05 28.2 8.8 73 6-84 2-77 (85)
71 KOG3206 Alpha-tubulin folding 92.3 0.47 1E-05 36.3 5.7 61 22-95 16-83 (234)
72 KOG2086 Protein tyrosine phosp 92.0 0.28 6E-06 40.4 4.6 66 5-77 303-371 (380)
73 smart00144 PI3K_rbd PI3-kinase 92.0 1.2 2.6E-05 30.2 7.0 82 6-94 16-105 (108)
74 PF11470 TUG-UBL1: GLUT4 regul 91.2 0.59 1.3E-05 29.1 4.5 59 14-84 3-61 (65)
75 smart00666 PB1 PB1 domain. Pho 90.7 0.78 1.7E-05 28.7 4.9 46 8-62 2-47 (81)
76 PRK08364 sulfur carrier protei 89.7 3.3 7.1E-05 25.7 7.0 47 10-67 5-51 (70)
77 cd00754 MoaD Ubiquitin domain 88.9 2.3 5E-05 26.3 5.9 60 17-90 14-73 (80)
78 PF14453 ThiS-like: ThiS-like 88.7 2.4 5.3E-05 25.8 5.6 39 22-73 9-47 (57)
79 PRK06437 hypothetical protein; 87.0 2.9 6.4E-05 25.8 5.5 41 17-68 9-49 (67)
80 PF00564 PB1: PB1 domain; Int 86.4 2.4 5.3E-05 26.4 5.0 48 7-62 1-48 (84)
81 TIGR01687 moaD_arch MoaD famil 85.5 6.7 0.00014 24.9 6.8 60 17-84 14-77 (88)
82 PF00794 PI3K_rbd: PI3-kinase 83.8 3.7 8.1E-05 27.2 5.2 69 5-74 14-84 (106)
83 PF08783 DWNN: DWNN domain; I 83.6 1.6 3.5E-05 27.9 3.1 31 10-40 1-32 (74)
84 PF08337 Plexin_cytopl: Plexin 83.4 5.6 0.00012 34.3 7.2 83 6-94 188-290 (539)
85 cd06406 PB1_P67 A PB1 domain i 82.7 2.9 6.4E-05 27.2 4.1 46 8-63 3-48 (80)
86 cd06407 PB1_NLP A PB1 domain i 81.2 3.2 6.9E-05 26.8 3.9 45 9-62 2-47 (82)
87 smart00295 B41 Band 4.1 homolo 80.6 5.3 0.00012 28.6 5.4 62 6-74 2-69 (207)
88 PLN02799 Molybdopterin synthas 80.6 4.5 9.8E-05 25.4 4.4 56 8-67 2-63 (82)
89 cd06409 PB1_MUG70 The MUG70 pr 80.2 3.7 8E-05 27.0 4.0 45 10-60 3-48 (86)
90 cd05992 PB1 The PB1 domain is 79.3 5 0.00011 24.7 4.3 46 8-62 1-47 (81)
91 KOG1639 Steroid reductase requ 76.3 3.7 8E-05 32.5 3.5 55 22-84 16-72 (297)
92 PF12754 Blt1: Cell-cycle cont 75.4 0.91 2E-05 36.5 0.0 40 28-74 103-157 (309)
93 PF11620 GABP-alpha: GA-bindin 75.2 13 0.00028 24.6 5.4 67 20-97 4-70 (88)
94 KOG4250 TANK binding protein k 75.1 9.1 0.0002 34.1 6.0 43 19-68 325-367 (732)
95 PF10209 DUF2340: Uncharacteri 73.7 13 0.00029 26.0 5.5 56 24-84 21-101 (122)
96 COG5100 NPL4 Nuclear pore prot 73.3 12 0.00026 31.7 6.0 73 9-92 2-78 (571)
97 cd01760 RBD Ubiquitin-like dom 73.3 8.2 0.00018 24.4 4.0 45 10-62 2-46 (72)
98 PF02597 ThiS: ThiS family; I 73.0 18 0.00039 21.9 6.4 56 22-90 15-70 (77)
99 cd06408 PB1_NoxR The PB1 domai 71.0 13 0.00029 24.4 4.7 53 8-72 3-55 (86)
100 PF00788 RA: Ras association ( 68.5 16 0.00035 22.7 4.8 47 8-59 3-52 (93)
101 TIGR01682 moaD molybdopterin c 68.2 19 0.0004 22.4 4.9 55 17-84 14-69 (80)
102 cd01768 RA RA (Ras-associating 67.8 26 0.00056 21.9 5.6 55 10-69 2-64 (87)
103 smart00455 RBD Raf-like Ras-bi 67.6 14 0.00029 23.1 4.1 45 10-62 2-46 (70)
104 cd00565 ThiS ThiaminS ubiquiti 66.8 17 0.00038 21.8 4.4 35 22-67 8-42 (65)
105 PRK11130 moaD molybdopterin sy 64.3 30 0.00066 21.7 5.4 21 23-43 19-40 (81)
106 cd01817 RGS12_RBD Ubiquitin do 63.5 17 0.00037 23.2 4.0 45 11-63 3-47 (73)
107 KOG0007 Splicing factor 3a, su 63.4 4.7 0.0001 32.5 1.7 43 22-71 296-339 (341)
108 KOG1364 Predicted ubiquitin re 62.8 6.3 0.00014 32.3 2.3 64 7-77 277-345 (356)
109 PF02196 RBD: Raf-like Ras-bin 61.2 37 0.0008 21.1 6.2 57 9-71 2-58 (71)
110 PF11069 DUF2870: Protein of u 61.1 12 0.00027 25.2 3.2 18 57-74 3-20 (98)
111 PF14836 Ubiquitin_3: Ubiquiti 59.1 37 0.00081 22.4 5.1 53 20-84 15-73 (88)
112 cd01775 CYR1_RA Ubiquitin doma 58.3 45 0.00098 22.4 5.5 48 9-62 4-51 (97)
113 cd06396 PB1_NBR1 The PB1 domai 58.2 19 0.00041 23.4 3.6 36 8-50 1-38 (81)
114 cd06410 PB1_UP2 Uncharacterize 57.2 24 0.00052 23.5 4.1 40 12-60 17-56 (97)
115 cd01777 SNX27_RA Ubiquitin dom 56.2 18 0.00039 23.9 3.3 38 7-50 1-38 (87)
116 KOG2982 Uncharacterized conser 56.0 41 0.00088 27.8 5.8 69 9-88 338-414 (418)
117 PRK06083 sulfur carrier protei 54.9 56 0.0012 21.1 7.7 57 8-84 17-73 (84)
118 cd01776 Rin1_RA Ubiquitin doma 53.6 36 0.00077 22.4 4.3 40 15-60 10-49 (87)
119 PRK05659 sulfur carrier protei 53.3 46 0.001 19.7 6.2 34 22-66 9-42 (66)
120 cd01787 GRB7_RA RA (RAS-associ 52.3 38 0.00082 22.2 4.3 31 8-39 3-33 (85)
121 KOG2561 Adaptor protein NUB1, 51.6 8.6 0.00019 32.9 1.4 66 5-77 35-101 (568)
122 PF02505 MCR_D: Methyl-coenzym 50.1 39 0.00085 24.6 4.5 42 22-74 78-120 (153)
123 PF02192 PI3K_p85B: PI3-kinase 50.1 17 0.00037 23.3 2.4 20 22-41 3-22 (78)
124 PF14941 OAF: Transcriptional 48.4 52 0.0011 25.5 5.1 58 4-68 24-81 (240)
125 KOG3439 Protein conjugation fa 45.6 53 0.0012 22.8 4.3 53 6-65 29-84 (116)
126 KOG2507 Ubiquitin regulatory p 44.8 40 0.00086 28.7 4.3 69 6-84 313-384 (506)
127 PRK07440 hypothetical protein; 44.7 74 0.0016 19.6 7.0 34 22-66 13-46 (70)
128 smart00314 RA Ras association 44.6 71 0.0015 20.0 4.7 52 10-67 5-64 (90)
129 cd01778 RASSF1_RA Ubiquitin-li 42.9 1E+02 0.0022 20.7 5.7 46 8-59 7-52 (96)
130 TIGR03260 met_CoM_red_D methyl 41.5 61 0.0013 23.5 4.3 42 22-74 77-118 (150)
131 cd06398 PB1_Joka2 The PB1 doma 41.4 94 0.002 20.3 5.0 44 10-62 3-52 (91)
132 PF10790 DUF2604: Protein of U 41.4 28 0.0006 22.0 2.2 40 47-94 32-72 (76)
133 PF04233 Phage_Mu_F: Phage Mu 40.1 17 0.00036 23.7 1.2 12 108-119 101-112 (112)
134 PF06123 CreD: Inner membrane 39.9 47 0.001 27.9 4.1 54 6-77 197-250 (430)
135 cd06411 PB1_p51 The PB1 domain 39.7 77 0.0017 20.5 4.2 35 21-62 9-43 (78)
136 PF06200 tify: tify domain; I 39.2 37 0.0008 18.7 2.3 14 52-65 4-17 (36)
137 PF00894 Luteo_coat: Luteoviru 38.7 1.1E+02 0.0024 21.8 5.2 55 7-63 45-117 (138)
138 smart00143 PI3K_p85B PI3-kinas 36.9 26 0.00056 22.6 1.6 20 22-41 3-22 (78)
139 PRK11715 inner membrane protei 36.1 55 0.0012 27.6 3.9 53 7-77 205-257 (436)
140 KOG2689 Predicted ubiquitin re 35.0 54 0.0012 26.2 3.5 33 5-38 208-240 (290)
141 COG2164 Uncharacterized conser 34.5 64 0.0014 22.3 3.3 31 6-38 2-34 (126)
142 COG5222 Uncharacterized conser 32.9 1.1E+02 0.0023 25.1 4.9 50 9-63 4-54 (427)
143 PF02824 TGS: TGS domain; Int 32.3 1E+02 0.0022 18.3 3.7 26 10-38 1-26 (60)
144 PF12436 USP7_ICP0_bdg: ICP0-b 31.4 93 0.002 23.8 4.3 48 6-60 175-224 (249)
145 KOG3391 Transcriptional co-rep 31.1 47 0.001 23.9 2.4 36 58-99 106-142 (151)
146 PF14533 USP7_C2: Ubiquitin-sp 30.5 2.2E+02 0.0047 21.2 6.1 49 21-74 36-90 (213)
147 COG4055 McrD Methyl coenzyme M 30.1 1.5E+02 0.0032 21.7 4.7 55 5-74 73-128 (165)
148 TIGR02958 sec_mycoba_snm4 secr 29.8 3.3E+02 0.0072 22.9 7.6 78 8-94 3-81 (452)
149 PF08154 NLE: NLE (NUC135) dom 28.5 1.4E+02 0.003 18.0 5.3 55 8-67 2-59 (65)
150 PRK05863 sulfur carrier protei 28.4 1.4E+02 0.003 17.9 6.3 46 22-84 9-54 (65)
151 KOG0012 DNA damage inducible p 27.7 1E+02 0.0022 25.6 4.0 54 20-84 14-69 (380)
152 cd06405 PB1_Mekk2_3 The PB1 do 27.0 1.4E+02 0.003 19.3 3.8 44 8-63 1-44 (79)
153 PRK08053 sulfur carrier protei 26.5 1.5E+02 0.0033 17.7 6.3 34 22-66 9-42 (66)
154 COG2104 ThiS Sulfur transfer p 24.5 1.8E+02 0.004 18.0 6.8 34 22-66 11-44 (68)
155 PRK12385 fumarate reductase ir 23.5 2.1E+02 0.0046 21.9 5.0 40 1-41 1-47 (244)
156 cd06397 PB1_UP1 Uncharacterize 23.4 1.3E+02 0.0027 19.7 3.1 43 11-62 4-46 (82)
157 KOG3309 Ferredoxin [Energy pro 22.6 1.5E+02 0.0031 21.8 3.6 32 5-37 41-72 (159)
158 PRK11840 bifunctional sulfur c 22.1 4.4E+02 0.0095 21.5 7.1 34 22-66 9-42 (326)
159 PRK01777 hypothetical protein; 21.4 2.5E+02 0.0055 18.4 7.4 56 7-66 3-60 (95)
160 PF14732 UAE_UbL: Ubiquitin/SU 20.9 1.5E+02 0.0033 19.0 3.2 50 27-84 7-62 (87)
161 cd01818 TIAM1_RBD Ubiquitin do 20.4 2.5E+02 0.0055 18.1 4.1 46 11-62 3-48 (77)
162 PF12039 DUF3525: Protein of u 20.0 1.2E+02 0.0027 24.6 3.1 37 54-92 25-66 (453)
No 1
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.98 E-value=5.7e-33 Score=190.42 Aligned_cols=112 Identities=52% Similarity=0.894 Sum_probs=106.8
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
++.|.||||+.+|+|+.++.|++++||++||++|.++||.+++++|-.+++|||||+||+|+|+.||++|++++|+..+.
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 68999999999999999999999999999999999999998888776689999999999999999999999999998888
Q ss_pred eeEEEEEEccCccccccchhhhcccCCCceEE
Q 033457 85 VTTMHVVIQPLVAKKKTEKTKEEMQKQNSCAC 116 (119)
Q Consensus 85 ~~~vhlv~~~~~~~~~~~~~~~~~~~~~~c~C 116 (119)
.+|||||++++.+.+..+|+++..+++..|+|
T Consensus 82 ~~TmHvvlr~~~~~~~~~k~~~~~~~~~~c~c 113 (113)
T cd01814 82 VITMHVVVQPPLADKKTEKKVDKAPKAVICTC 113 (113)
T ss_pred ceEEEEEecCCCCCccccccccCCcccCCCCC
Confidence 88999999999999999999999999999999
No 2
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.98 E-value=3.4e-32 Score=187.38 Aligned_cols=111 Identities=44% Similarity=0.757 Sum_probs=85.7
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
+.|+||||+.+|+|+.++.|++++||++||+.|+++||++++..|.+++++||||+||+|+|+.+|+++++++++.++.+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 46899999999999999999999999999999999999999988888999999999999999999999999987776677
Q ss_pred eEEEEEEccCccccccchhhhcccCCCceEEe
Q 033457 86 TTMHVVIQPLVAKKKTEKTKEEMQKQNSCACI 117 (119)
Q Consensus 86 ~~vhlv~~~~~~~~~~~~~~~~~~~~~~c~C~ 117 (119)
++|||+++++.+....+++ ..++++..|+|+
T Consensus 81 ~vmHlvvrp~~~~~~~~~~-~~~~k~~~C~C~ 111 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNEEKK-RKKPKQSGCSCC 111 (111)
T ss_dssp EEEEEEE-SSSSSSSSSS------STT-----
T ss_pred EEEEEEecCCCCCcccccc-ccCcCCCCCCCC
Confidence 8999999999988777654 556999999996
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.78 E-value=5.6e-19 Score=112.68 Aligned_cols=74 Identities=26% Similarity=0.511 Sum_probs=68.3
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|.||..+|+. ..+++++++||++||++| ++..++| +++|||+|+|+.|+|+.+|++|+|+ +++ +
T Consensus 1 m~i~vk~~~G~~-~~l~v~~~~tV~~lK~~i-----~~~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~----~~~--~ 66 (74)
T cd01807 1 MFLTVKLLQGRE-CSLQVSEKESVSTLKKLV-----SEHLNVP--EEQQRLLFKGKALADDKRLSDYSIG----PNA--K 66 (74)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCCC--HHHeEEEECCEECCCCCCHHHCCCC----CCC--E
Confidence 368899999964 578999999999999999 8888999 9999999999999999999999999 999 9
Q ss_pred EEEEEccC
Q 033457 88 MHVVIQPL 95 (119)
Q Consensus 88 vhlv~~~~ 95 (119)
+||++++|
T Consensus 67 l~l~~~~~ 74 (74)
T cd01807 67 LNLVVRPP 74 (74)
T ss_pred EEEEEcCC
Confidence 99999865
No 4
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.75 E-value=3e-18 Score=108.97 Aligned_cols=69 Identities=28% Similarity=0.389 Sum_probs=64.1
Q ss_pred EEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEE
Q 033457 10 LKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMH 89 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vh 89 (119)
+|+++.+|+. .++++++++||++||++| ++.+++| +++|||+|+|+.|+|+.+|++|+|. +++ +||
T Consensus 1 ~~vk~~~G~~-~~l~v~~~~TV~~lK~~I-----~~~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~----~~~--tv~ 66 (70)
T cd01794 1 LKVRLSTGKD-VKLSVSSKDTVGQLKKQL-----QAAEGVD--PCCQRWFFSGKLLTDKTRLQETKIQ----KDY--VVQ 66 (70)
T ss_pred CeEEcCCCCE-EEEEECCcChHHHHHHHH-----HHHhCCC--HHHeEEEECCeECCCCCCHHHcCCC----CCC--EEE
Confidence 5789999965 589999999999999999 8888999 9999999999999999999999999 899 999
Q ss_pred EEE
Q 033457 90 VVI 92 (119)
Q Consensus 90 lv~ 92 (119)
|++
T Consensus 67 ~~~ 69 (70)
T cd01794 67 VIV 69 (70)
T ss_pred EEe
Confidence 976
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.74 E-value=6.9e-18 Score=107.70 Aligned_cols=73 Identities=25% Similarity=0.251 Sum_probs=64.8
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEE
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTM 88 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~v 88 (119)
+|.||. + +...+++++++||++||++| ++.+++| +++|||+|+||.|+|+.+|++|+|+ +++ ++
T Consensus 2 qi~vk~--~-~~~~l~v~~~~tV~~lK~~i-----~~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~----~~~--tl 65 (74)
T cd01793 2 QLFVRA--Q-NTHTLEVTGQETVSDIKAHV-----AGLEGID--VEDQVLLLAGVPLEDDATLGQCGVE----ELC--TL 65 (74)
T ss_pred EEEEEC--C-CEEEEEECCcCcHHHHHHHH-----HhhhCCC--HHHEEEEECCeECCCCCCHHHcCCC----CCC--EE
Confidence 456664 2 24689999999999999999 8889999 9999999999999999999999999 999 99
Q ss_pred EEEEccCcc
Q 033457 89 HVVIQPLVA 97 (119)
Q Consensus 89 hlv~~~~~~ 97 (119)
|++++.+++
T Consensus 66 ~l~~~l~GG 74 (74)
T cd01793 66 EVAGRLLGG 74 (74)
T ss_pred EEEEecCCC
Confidence 999998753
No 6
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.73 E-value=1e-17 Score=108.52 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=67.8
Q ss_pred EEEEEEeCCCceeEEEe-ecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCee
Q 033457 8 VELKFRIYDGTDICHGT-YASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~-~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
++|.|+..+|+....++ +++++||++||++| ++..++| +++|||+|+||+|+|+.+|++|+|. +++
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i-----~~~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~----~~~-- 67 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKI-----QELFNVE--PECQRLFYRGKQMEDGHTLFDYNVG----LND-- 67 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHH-----HHHhCCC--HHHeEEEeCCEECCCCCCHHHcCCC----CCC--
Confidence 36889999997544674 78999999999999 8888999 9999999999999999999999999 999
Q ss_pred EEEEEEccCc
Q 033457 87 TMHVVIQPLV 96 (119)
Q Consensus 87 ~vhlv~~~~~ 96 (119)
+||+++++.+
T Consensus 68 ~i~l~~~~~~ 77 (78)
T cd01797 68 IIQLLVRQDP 77 (78)
T ss_pred EEEEEEecCC
Confidence 9999998753
No 7
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.71 E-value=3.3e-17 Score=111.34 Aligned_cols=77 Identities=23% Similarity=0.249 Sum_probs=69.6
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
+.+.|.|+..+|+. ..+++++++||++||++| ++.+++| +++|||+|+|+.|+|+.+|++|+|. +++
T Consensus 26 ~~M~I~Vk~l~G~~-~~leV~~~~TV~~lK~kI-----~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~----~~s- 92 (103)
T cd01802 26 DTMELFIETLTGTC-FELRVSPFETVISVKAKI-----QRLEGIP--VAQQHLIWNNMELEDEYCLNDYNIS----EGC- 92 (103)
T ss_pred CCEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHH-----HHHhCCC--hHHEEEEECCEECCCCCcHHHcCCC----CCC-
Confidence 35788888888864 578999999999999999 8888999 9999999999999999999999999 999
Q ss_pred eEEEEEEccCc
Q 033457 86 TTMHVVIQPLV 96 (119)
Q Consensus 86 ~~vhlv~~~~~ 96 (119)
++|++++.++
T Consensus 93 -tL~l~~~l~G 102 (103)
T cd01802 93 -TLKLVLAMRG 102 (103)
T ss_pred -EEEEEEecCC
Confidence 9999998765
No 8
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.71 E-value=1.7e-17 Score=108.05 Aligned_cols=75 Identities=24% Similarity=0.203 Sum_probs=60.8
Q ss_pred eEEEEEEeCCCcee-EEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCC--ccccCCCC
Q 033457 7 CVELKFRIYDGTDI-CHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSR--ITVGDLPS 83 (119)
Q Consensus 7 ~i~ik~~~~~g~~~-~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~--i~~~~~~~ 83 (119)
.|.|.|+.++++.. ..+++++++||++||++|..++|. ..| +++|||||+||+|+|+.+|++|. +. ++
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~---~~~--~~~QrLIy~GKiLkD~~tL~~~~~~~~----~~ 71 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPS---KPL--EQDQRLIYSGKLLPDHLKLRDVLRKQD----EY 71 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCC---CCC--hhHeEEEEcCeeccchhhHHHHhhccc----CC
Confidence 37899999998642 234458999999999999544431 345 79999999999999999999995 77 77
Q ss_pred CeeEEEEEE
Q 033457 84 GVTTMHVVI 92 (119)
Q Consensus 84 ~~~~vhlv~ 92 (119)
. +||||.
T Consensus 72 ~--tiHLV~ 78 (79)
T cd01790 72 H--MVHLVC 78 (79)
T ss_pred c--eEEEEe
Confidence 8 999986
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.70 E-value=3.2e-17 Score=104.62 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=66.4
Q ss_pred EEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEE
Q 033457 10 LKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMH 89 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vh 89 (119)
|.||..+|+ ..++++++++||++||++| +...++| +++|||+|+|+.|+|+.+|++|+|+ +++ ++|
T Consensus 1 i~vk~~~g~-~~~l~v~~~~tV~~lK~~I-----~~~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~----~~~--tl~ 66 (74)
T cd01810 1 ILVRNDKGR-SSIYEVQLTQTVATLKQQV-----SQRERVQ--ADQFWLSFEGRPMEDEHPLGEYGLK----PGC--TVF 66 (74)
T ss_pred CEEECCCCC-EEEEEECCcChHHHHHHHH-----HHHhCCC--HHHeEEEECCEECCCCCCHHHcCCC----CCC--EEE
Confidence 567888886 4589999999999999999 8888999 9999999999999999999999999 999 999
Q ss_pred EEEccCc
Q 033457 90 VVIQPLV 96 (119)
Q Consensus 90 lv~~~~~ 96 (119)
++++..+
T Consensus 67 l~~~l~g 73 (74)
T cd01810 67 MNLRLRG 73 (74)
T ss_pred EEEEccC
Confidence 9888654
No 10
>PTZ00044 ubiquitin; Provisional
Probab=99.70 E-value=4.7e-17 Score=103.72 Aligned_cols=75 Identities=25% Similarity=0.424 Sum_probs=68.3
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|.||..+|+. ..+.+++++||++||++| +...++| +++|||+|+|+.|+|+.+|++|+++ +++ +
T Consensus 1 m~i~vk~~~G~~-~~l~v~~~~tv~~lK~~i-----~~~~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~----~~~--~ 66 (76)
T PTZ00044 1 MQILIKTLTGKK-QSFNFEPDNTVQQVKMAL-----QEKEGID--VKQIRLIYSGKQMSDDLKLSDYKVV----PGS--T 66 (76)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCCC--HHHeEEEECCEEccCCCcHHHcCCC----CCC--E
Confidence 368889999964 578999999999999999 8888999 9999999999999999999999999 999 9
Q ss_pred EEEEEccCc
Q 033457 88 MHVVIQPLV 96 (119)
Q Consensus 88 vhlv~~~~~ 96 (119)
+|++++.++
T Consensus 67 i~l~~~~~g 75 (76)
T PTZ00044 67 IHMVLQLRG 75 (76)
T ss_pred EEEEEEccC
Confidence 999988654
No 11
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.70 E-value=8.2e-17 Score=101.99 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=68.3
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|.|+..+|+. ..+++++++||++||++| +...++| ++.|||+|.|+.|+|+.+|++|++. +++ +
T Consensus 1 m~i~v~~~~g~~-~~~~v~~~~tv~~lK~~i-----~~~~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~----~g~--~ 66 (76)
T cd01806 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERV-----EEKEGIP--PQQQRLIYSGKQMNDDKTAADYKLE----GGS--V 66 (76)
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHH-----hHhhCCC--hhhEEEEECCeEccCCCCHHHcCCC----CCC--E
Confidence 468899999975 478999999999999999 8788999 9999999999999999999999999 999 9
Q ss_pred EEEEEccCc
Q 033457 88 MHVVIQPLV 96 (119)
Q Consensus 88 vhlv~~~~~ 96 (119)
+|++++.++
T Consensus 67 i~l~~~~~g 75 (76)
T cd01806 67 LHLVLALRG 75 (76)
T ss_pred EEEEEEccC
Confidence 999998654
No 12
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.70 E-value=4.5e-17 Score=102.72 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=63.9
Q ss_pred EEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEE
Q 033457 10 LKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMH 89 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vh 89 (119)
|.|+..+|.. .++.+++++||++||++| +...++| +++|||+|+|+.|+|+.+|++|+|. +++ ++|
T Consensus 1 i~vk~~~g~~-~~~~v~~~~tV~~lK~~i-----~~~~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~----~~s--tl~ 66 (70)
T cd01798 1 VYVRTNTGHT-FPVEVDPDTDIKQLKEVV-----AKRQGVP--PDQLRVIFAGKELRNTTTIQECDLG----QQS--ILH 66 (70)
T ss_pred CEEEcCCCCE-EEEEECCCChHHHHHHHH-----HHHHCCC--HHHeEEEECCeECCCCCcHHHcCCC----CCC--EEE
Confidence 4578888864 578999999999999999 8888999 9999999999999999999999999 999 999
Q ss_pred EEEc
Q 033457 90 VVIQ 93 (119)
Q Consensus 90 lv~~ 93 (119)
|+.|
T Consensus 67 l~~~ 70 (70)
T cd01798 67 AVRR 70 (70)
T ss_pred EEeC
Confidence 9875
No 13
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.68 E-value=1.1e-16 Score=102.54 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=64.1
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
+.|.|+...|+. ..+++++++||++||++| +...++| +++|||||+|++|+|+.+|++|+|. +++ +
T Consensus 2 ~~i~vkt~~Gk~-~~~~v~~~~TV~~LK~~I-----~~~~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~----~~s--t 67 (73)
T cd01791 2 IEVVCNDRLGKK-VRVKCNPDDTIGDLKKLI-----AAQTGTR--PEKIVLKKWYTIFKDHISLGDYEIH----DGM--N 67 (73)
T ss_pred EEEEEECCCCCE-EEEEeCCCCcHHHHHHHH-----HHHhCCC--hHHEEEEeCCcCCCCCCCHHHcCCC----CCC--E
Confidence 678898888865 467999999999999999 7777899 9999999999999999999999999 999 9
Q ss_pred EEEEE
Q 033457 88 MHVVI 92 (119)
Q Consensus 88 vhlv~ 92 (119)
|||.-
T Consensus 68 v~l~~ 72 (73)
T cd01791 68 LELYY 72 (73)
T ss_pred EEEEe
Confidence 99853
No 14
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.67 E-value=1.9e-16 Score=100.15 Aligned_cols=71 Identities=25% Similarity=0.341 Sum_probs=63.5
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
+.|.|+..+|. . .+++++++||++||++| +...++| +.+|||+|+|+.|+|+.+|++|++. +++ +
T Consensus 1 ~~i~vk~~~g~-~-~l~v~~~~TV~~lK~~I-----~~~~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~----~~s--t 65 (71)
T cd01808 1 IKVTVKTPKDK-E-EIEIAEDASVKDFKEAV-----SKKFKAN--QEQLVLIFAGKILKDTDTLTQHNIK----DGL--T 65 (71)
T ss_pred CEEEEEcCCCC-E-EEEECCCChHHHHHHHH-----HHHhCCC--HHHEEEEECCeEcCCCCcHHHcCCC----CCC--E
Confidence 35778888885 3 78999999999999999 7777788 9999999999999999999999999 999 9
Q ss_pred EEEEEc
Q 033457 88 MHVVIQ 93 (119)
Q Consensus 88 vhlv~~ 93 (119)
+|++++
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 999875
No 15
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.66 E-value=3e-16 Score=99.41 Aligned_cols=75 Identities=29% Similarity=0.415 Sum_probs=68.1
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
+.|.|+..+|+. ..+.+++++||++||++| +...++| +++|||+|.|+.|+|+.+|++|+++ +++ +
T Consensus 1 m~i~v~~~~g~~-~~~~v~~~~tV~~lK~~i-----~~~~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~----~~~--~ 66 (76)
T cd01803 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES--T 66 (76)
T ss_pred CEEEEEcCCCCE-EEEEECCcCcHHHHHHHH-----HHHhCCC--HHHeEEEECCEECCCCCcHHHcCCC----CCC--E
Confidence 358888888875 478999999999999999 8888999 9999999999999999999999999 999 9
Q ss_pred EEEEEccCc
Q 033457 88 MHVVIQPLV 96 (119)
Q Consensus 88 vhlv~~~~~ 96 (119)
+|++++.++
T Consensus 67 i~l~~~~~g 75 (76)
T cd01803 67 LHLVLRLRG 75 (76)
T ss_pred EEEEEEccC
Confidence 999998764
No 16
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.66 E-value=3.6e-16 Score=101.02 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=66.8
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|.|+..+|+. +++++++++||++||++| +...++| +++|||+|+|+.|+|+ +|++|+|. +++ +
T Consensus 2 m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I-----~~~~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~----~~~--~ 66 (78)
T cd01804 2 MNLNIHSTTGTR-FDLSVPPDETVEGLKKRI-----SQRLKVP--KERLALLHRETRLSSG-KLQDLGLG----DGS--K 66 (78)
T ss_pred eEEEEEECCCCE-EEEEECCcCHHHHHHHHH-----HHHhCCC--hHHEEEEECCcCCCCC-cHHHcCCC----CCC--E
Confidence 678999998865 689999999999999999 7777899 9999999999999999 99999999 999 9
Q ss_pred EEEEEccCc
Q 033457 88 MHVVIQPLV 96 (119)
Q Consensus 88 vhlv~~~~~ 96 (119)
+||+.....
T Consensus 67 i~l~~~~~~ 75 (78)
T cd01804 67 LTLVPTVEA 75 (78)
T ss_pred EEEEeeccc
Confidence 999887654
No 17
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.66 E-value=4.5e-16 Score=99.28 Aligned_cols=74 Identities=26% Similarity=0.377 Sum_probs=65.5
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCC--CCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTIT--PKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~--p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
++|.|+..+|.. ..+.+++++||++||++| ++..++ | +++|||+|.|+.|+|+.+|++|+|+ +++
T Consensus 1 m~i~vk~~~g~~-~~l~v~~~~TV~~lK~~i-----~~~~~i~~~--~~~q~L~~~G~~L~d~~~L~~~~i~----~~~- 67 (77)
T cd01805 1 MKITFKTLKQQT-FPIEVDPDDTVAELKEKI-----EEEKGCDYP--PEQQKLIYSGKILKDDTTLEEYKID----EKD- 67 (77)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHhhCCCCC--hhHeEEEECCEEccCCCCHHHcCCC----CCC-
Confidence 368889899864 579999999999999999 777777 8 9999999999999999999999999 999
Q ss_pred eEEEEEEccC
Q 033457 86 TTMHVVIQPL 95 (119)
Q Consensus 86 ~~vhlv~~~~ 95 (119)
++|++++.+
T Consensus 68 -~i~~~~~~~ 76 (77)
T cd01805 68 -FVVVMVSKP 76 (77)
T ss_pred -EEEEEEecC
Confidence 788877654
No 18
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.65 E-value=3.9e-16 Score=97.55 Aligned_cols=69 Identities=35% Similarity=0.485 Sum_probs=62.1
Q ss_pred EeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEEEE
Q 033457 13 RIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVI 92 (119)
Q Consensus 13 ~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv~ 92 (119)
+..+|+ ...+++++++||++||++| +...++| ++.|+|+|.|+.|+|+.+|++|+|. +++ +||+++
T Consensus 1 k~~~g~-~~~~~v~~~~tV~~lK~~i-----~~~~~~~--~~~~~L~~~G~~L~d~~tL~~~~i~----~~~--~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGK-TFTLEVDPDDTVADLKQKI-----AEETGIP--PEQQRLIYNGKELDDDKTLSDYGIK----DGS--TIHLVI 66 (69)
T ss_dssp EETTSE-EEEEEEETTSBHHHHHHHH-----HHHHTST--GGGEEEEETTEEESTTSBTGGGTTS----TTE--EEEEEE
T ss_pred CCCCCc-EEEEEECCCCCHHHhhhhc-----ccccccc--cccceeeeeeecccCcCcHHHcCCC----CCC--EEEEEE
Confidence 456776 4689999999999999999 7777899 9999999999999999999999999 999 999988
Q ss_pred ccC
Q 033457 93 QPL 95 (119)
Q Consensus 93 ~~~ 95 (119)
+++
T Consensus 67 k~~ 69 (69)
T PF00240_consen 67 KPR 69 (69)
T ss_dssp SSE
T ss_pred ecC
Confidence 763
No 19
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.65 E-value=5.2e-16 Score=97.35 Aligned_cols=72 Identities=26% Similarity=0.468 Sum_probs=65.2
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
|+|.++..+|+. ..+.+++++||++||++| +...++| ++.|||+|.|+.|+|+.+|++|++. +++ +
T Consensus 1 i~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i-----~~~~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~----~~~--~ 66 (72)
T cd01809 1 IEIKVKTLDSQT-HTFTVEEEITVLDLKEKI-----AEEVGIP--VEQQRLIYSGRVLKDDETLSEYKVE----DGH--T 66 (72)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCcC--HHHeEEEECCEECCCcCcHHHCCCC----CCC--E
Confidence 578899998864 589999999999999999 7777899 9999999999999999999999999 999 9
Q ss_pred EEEEEc
Q 033457 88 MHVVIQ 93 (119)
Q Consensus 88 vhlv~~ 93 (119)
+|++.+
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 999864
No 20
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.62 E-value=9.7e-16 Score=99.22 Aligned_cols=73 Identities=26% Similarity=0.405 Sum_probs=66.7
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEE--EEcceeeCCCCCcccCCccccCCCCCe
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKL--IHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrL--i~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
++|.|+..+|+. ..+++++++||++||++| +...++| +++||| +|.|++|.|+.+|++|+|. +++
T Consensus 3 ~~i~Vk~~~G~~-~~~~v~~~~TV~~lK~~I-----~~~~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~----~gs- 69 (80)
T cd01792 3 WDLKVKMLGGNE-FLVSLRDSMTVSELKQQI-----AQKIGVP--AFQQRLAHLDSREVLQDGVPLVSQGLG----PGS- 69 (80)
T ss_pred eEEEEEeCCCCE-EEEEcCCCCcHHHHHHHH-----HHHhCCC--HHHEEEEeccCCCCCCCCCCHHHcCCC----CCC-
Confidence 789999999975 468999999999999999 7777899 999999 9999999999999999999 999
Q ss_pred eEEEEEEcc
Q 033457 86 TTMHVVIQP 94 (119)
Q Consensus 86 ~~vhlv~~~ 94 (119)
++||+++.
T Consensus 70 -~l~l~~~~ 77 (80)
T cd01792 70 -TVLLVVQN 77 (80)
T ss_pred -EEEEEEEc
Confidence 89998874
No 21
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.61 E-value=1.2e-15 Score=97.89 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=63.2
Q ss_pred CCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEEEEccC
Q 033457 16 DGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQPL 95 (119)
Q Consensus 16 ~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv~~~~ 95 (119)
+| .+.++++++++||++||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++ +|||+++.+
T Consensus 6 ~g-~~~~l~v~~~~TV~~lK~~i-----~~~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~----~g~--~l~v~~~~~ 71 (76)
T cd01800 6 NG-QMLNFTLQLSDPVSVLKVKI-----HEETGMP--AGKQKLQYEGIFIKDSNSLAYYNLA----NGT--IIHLQLKER 71 (76)
T ss_pred CC-eEEEEEECCCCcHHHHHHHH-----HHHHCCC--HHHEEEEECCEEcCCCCcHHHcCCC----CCC--EEEEEEecC
Confidence 44 45689999999999999999 8888999 9999999999999999999999999 999 999999987
Q ss_pred cccc
Q 033457 96 VAKK 99 (119)
Q Consensus 96 ~~~~ 99 (119)
++.+
T Consensus 72 gg~~ 75 (76)
T cd01800 72 GGRK 75 (76)
T ss_pred CCcC
Confidence 7543
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.60 E-value=1.7e-15 Score=96.14 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=60.1
Q ss_pred EEEEeC-CCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCC-CCcccCCccccCCCCCeeE
Q 033457 10 LKFRIY-DGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEND-RTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 10 ik~~~~-~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~-~tL~~~~i~~~~~~~~~~~ 87 (119)
|+|+.. +|+ ...+++++++||++||++| +..+++| +++|||+|+||.|+|+ .+|++|+|+ +++ +
T Consensus 1 l~v~~~~~g~-~~~l~v~~~~TV~~lK~~I-----~~~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~----~~~--~ 66 (71)
T cd01796 1 ITVYTARSET-TFSLDVDPDLELENFKALC-----EAESGIP--ASQQQLIYNGRELVDNKRLLALYGVK----DGD--L 66 (71)
T ss_pred CEEEECCCCC-EEEEEECCcCCHHHHHHHH-----HHHhCCC--HHHeEEEECCeEccCCcccHHHcCCC----CCC--E
Confidence 467888 675 5689999999999999999 8889999 9999999999999887 689999999 999 8
Q ss_pred EEE
Q 033457 88 MHV 90 (119)
Q Consensus 88 vhl 90 (119)
+||
T Consensus 67 l~l 69 (71)
T cd01796 67 VVL 69 (71)
T ss_pred EEE
Confidence 876
No 23
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.9e-15 Score=93.26 Aligned_cols=69 Identities=25% Similarity=0.405 Sum_probs=63.8
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEE
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTM 88 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~v 88 (119)
-||+.+..|+.+ .+.++|+++|.++|+.| ++.+++| +.+|||||+||.+.|+.+-+.|++. .|+ ++
T Consensus 2 ~iKvktLt~KeI-eidIep~DkverIKErv-----EEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~----~GS--Vl 67 (70)
T KOG0005|consen 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERV-----EEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLL----GGS--VL 67 (70)
T ss_pred eeeEeeeccceE-EEeeCcchHHHHHHHHh-----hhhcCCC--chhhhhhhccccccccccHHHhhhc----cce--eE
Confidence 478888888765 78999999999999999 9999999 9999999999999999999999999 888 89
Q ss_pred EEE
Q 033457 89 HVV 91 (119)
Q Consensus 89 hlv 91 (119)
|+|
T Consensus 68 Hlv 70 (70)
T KOG0005|consen 68 HLV 70 (70)
T ss_pred eeC
Confidence 975
No 24
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.55 E-value=1.2e-14 Score=91.12 Aligned_cols=70 Identities=23% Similarity=0.245 Sum_probs=62.0
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
|+|+|+.. | ....+.+++++||++||++| +...++| +++|||+|.|+.|.|+.+|++|++. +|+ +
T Consensus 1 i~i~vk~~-g-~~~~i~v~~~~tv~~lK~~i-----~~~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~----~g~--~ 65 (71)
T cd01812 1 IRVRVKHG-G-ESHDLSISSQATFGDLKKML-----APVTGVE--PRDQKLIFKGKERDDAETLDMSGVK----DGS--K 65 (71)
T ss_pred CEEEEEEC-C-EEEEEEECCCCcHHHHHHHH-----HHhhCCC--hHHeEEeeCCcccCccCcHHHcCCC----CCC--E
Confidence 46777776 5 35688999999999999999 8888999 9999999999999999999999999 999 8
Q ss_pred EEEEE
Q 033457 88 MHVVI 92 (119)
Q Consensus 88 vhlv~ 92 (119)
+|++.
T Consensus 66 l~v~~ 70 (71)
T cd01812 66 VMLLE 70 (71)
T ss_pred EEEec
Confidence 88763
No 25
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5.9e-15 Score=106.15 Aligned_cols=82 Identities=29% Similarity=0.404 Sum_probs=70.2
Q ss_pred EEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEE
Q 033457 10 LKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMH 89 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vh 89 (119)
|.+....|+ +..+++++++||..+|++| ++.++|| +++|||||+|+.|+|+.+|++|+|+ ..+ ++|
T Consensus 3 ifVk~l~~k-ti~~eve~~~ti~~~Kaki-----q~~egIp--~dqqrlifag~qLedgrtlSDY~Iq----kes--tl~ 68 (156)
T KOG0004|consen 3 IFVKTLTGK-TITLEVEANDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES--TLH 68 (156)
T ss_pred cchhhcccc-ceeeeecccccHHHHHHhh-----hcccCCC--chhhhhhhhhcccccCCcccccccc----ccc--eEE
Confidence 334444454 3468999999999999999 9999999 9999999999999999999999999 888 999
Q ss_pred EEEccCccccccchhh
Q 033457 90 VVIQPLVAKKKTEKTK 105 (119)
Q Consensus 90 lv~~~~~~~~~~~~~~ 105 (119)
|+++..++.+...+..
T Consensus 69 l~l~l~Gg~kkrkkk~ 84 (156)
T KOG0004|consen 69 LVLRLRGGAKKRKKKS 84 (156)
T ss_pred EEEEecCCcccccccc
Confidence 9999999877665443
No 26
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.52 E-value=1e-14 Score=94.12 Aligned_cols=54 Identities=30% Similarity=0.408 Sum_probs=47.6
Q ss_pred CCccHHHHHHHcccccCCCcc--CC-CCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEEEEc
Q 033457 27 SSTTVATLKQQLVAEWPQGKT--IT-PKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQ 93 (119)
Q Consensus 27 ~~~TV~~LK~~I~~~wp~~~~--~~-p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv~~ 93 (119)
.++||.+||++| ++.. ++ + +++|||||+||+|+|+.+|++|+|. +++ +||||.+
T Consensus 19 ~~~TV~~LK~kI-----~~~~~egi~~--~dqQrLIy~GKiL~D~~TL~dygI~----~gs--tlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLI-----AAQLPDSLPD--PELIDLIHCGRKLKDDQTLDFYGIQ----SGS--TIHILRK 75 (75)
T ss_pred ccCcHHHHHHHH-----HHhhccCCCC--hHHeEEEeCCcCCCCCCcHHHcCCC----CCC--EEEEEeC
Confidence 678999999999 6653 34 5 7999999999999999999999999 999 9999863
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.51 E-value=1.1e-13 Score=91.05 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=71.8
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
...|.|+++..+|+. ..+.+.+++++..||+++ ++..++| +++|||+|.|+.|+|+.|+++|++. +++
T Consensus 9 ~~~i~I~v~~~~g~~-~~~~v~~~~~l~~l~~~y-----~~~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~----d~d 76 (87)
T cd01763 9 SEHINLKVKGQDGNE-VFFKIKRSTPLKKLMEAY-----CQRQGLS--MNSVRFLFDGQRIRDNQTPDDLGME----DGD 76 (87)
T ss_pred CCeEEEEEECCCCCE-EEEEEcCCCHHHHHHHHH-----HHHhCCC--ccceEEEECCeECCCCCCHHHcCCC----CCC
Confidence 678999999999975 479999999999999999 8888999 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCc
Q 033457 85 VTTMHVVIQPLV 96 (119)
Q Consensus 85 ~~~vhlv~~~~~ 96 (119)
+||++++..+
T Consensus 77 --~I~v~l~l~G 86 (87)
T cd01763 77 --EIEVMLEQTG 86 (87)
T ss_pred --EEEEEEeccc
Confidence 9999988765
No 28
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.50 E-value=2.1e-14 Score=118.54 Aligned_cols=77 Identities=26% Similarity=0.338 Sum_probs=68.4
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCee
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
.++|+++.++. ...|.+..+.||.+||+.| ....+.+ +++++|||+||+|+|+.||..|+|. +|.
T Consensus 15 ~irV~Vkt~~d--k~~~~V~~~ssV~qlKE~I-----~~~f~a~--~dqlvLIfaGrILKD~dTL~~~gI~----Dg~-- 79 (493)
T KOG0010|consen 15 LIRVTVKTPKD--KYEVNVASDSSVLQLKELI-----AQRFGAP--PDQLVLIYAGRILKDDDTLKQYGIQ----DGH-- 79 (493)
T ss_pred eeEEEEecCCc--ceeEecccchHHHHHHHHH-----HHhcCCC--hhHeeeeecCccccChhhHHHcCCC----CCc--
Confidence 37777877776 3579999999999999999 7777888 9999999999999999999999999 999
Q ss_pred EEEEEEccCccc
Q 033457 87 TMHVVIQPLVAK 98 (119)
Q Consensus 87 ~vhlv~~~~~~~ 98 (119)
|||||++.....
T Consensus 80 TvHLVik~~~~~ 91 (493)
T KOG0010|consen 80 TVHLVIKSQPRP 91 (493)
T ss_pred EEEEEeccCCCC
Confidence 999999977543
No 29
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.49 E-value=7.9e-14 Score=89.43 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=58.2
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE---cceeeCCCCCcccCCccccCCCCCe
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH---AGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~---~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
.|.+++.+ ..+.+++++++||++||++| ++..++| +++||||| .|+.|.|+.+|++|+|. +++
T Consensus 2 ~i~vk~~g--~~~~v~v~~~~Tv~~lK~~i-----~~~tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~----~g~- 67 (74)
T cd01813 2 PVIVKWGG--QEYSVTTLSEDTVLDLKQFI-----KTLTGVL--PERQKLLGLKVKGKPAEDDVKISALKLK----PNT- 67 (74)
T ss_pred EEEEEECC--EEEEEEECCCCCHHHHHHHH-----HHHHCCC--HHHEEEEeecccCCcCCCCcCHHHcCCC----CCC-
Confidence 34444444 35689999999999999999 8888999 99999997 99999999999999999 888
Q ss_pred eEEEEE
Q 033457 86 TTMHVV 91 (119)
Q Consensus 86 ~~vhlv 91 (119)
.++|+
T Consensus 68 -~i~lm 72 (74)
T cd01813 68 -KIMMM 72 (74)
T ss_pred -EEEEE
Confidence 77664
No 30
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3e-15 Score=102.20 Aligned_cols=68 Identities=34% Similarity=0.437 Sum_probs=63.0
Q ss_pred CCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEEEEccC
Q 033457 16 DGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQPL 95 (119)
Q Consensus 16 ~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv~~~~ 95 (119)
.|+ +..++++|++||..||.+| ++.+++| +++|||||+||+|+|+.||++|+|+ ..+ |+|++.+..
T Consensus 9 ~GK-T~~le~EpS~ti~~vKA~i-----~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~----~~~--Tl~~~~rL~ 74 (128)
T KOG0003|consen 9 TGK-TITLEVEPSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQ----KES--TLHLVLRLR 74 (128)
T ss_pred eCc-eEEEEecccchHHHHHHHh-----ccccCCC--HHHHHHHhcccccccCCcccccCcc----chh--hhhhhHHHh
Confidence 454 4578999999999999999 9999999 9999999999999999999999999 888 999999988
Q ss_pred cc
Q 033457 96 VA 97 (119)
Q Consensus 96 ~~ 97 (119)
++
T Consensus 75 GG 76 (128)
T KOG0003|consen 75 GG 76 (128)
T ss_pred cC
Confidence 77
No 31
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=3e-13 Score=109.87 Aligned_cols=74 Identities=24% Similarity=0.397 Sum_probs=63.3
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccC---CCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTI---TPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~---~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
+.|+||..+|+. +.+++++++||.+||++| +...+ +| +++|||||+||+|+|+.+|++|+|. +++
T Consensus 1 MkItVKtl~g~~-~~IeV~~~~TV~dLK~kI-----~~~~g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~----e~~ 68 (378)
T TIGR00601 1 MTLTFKTLQQQK-FKIDMEPDETVKELKEKI-----EAEQGKDAYP--VAQQKLIYSGKILSDDKTVREYKIK----EKD 68 (378)
T ss_pred CEEEEEeCCCCE-EEEEeCCcChHHHHHHHH-----HHhhCCCCCC--hhHeEEEECCEECCCCCcHHHcCCC----CCC
Confidence 468899898864 578999999999999999 66665 88 9999999999999999999999999 888
Q ss_pred eeEEEEEEccC
Q 033457 85 VTTMHVVIQPL 95 (119)
Q Consensus 85 ~~~vhlv~~~~ 95 (119)
+|++++..+
T Consensus 69 --~Ivvmv~k~ 77 (378)
T TIGR00601 69 --FVVVMVSKP 77 (378)
T ss_pred --EEEEEeccC
Confidence 555555543
No 32
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.40 E-value=5.9e-13 Score=80.97 Aligned_cols=61 Identities=38% Similarity=0.508 Sum_probs=55.0
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCcc
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRIT 77 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~ 77 (119)
++|+++..+ . ...+.+++++||++||++| +...++| ++.|||+|.|+.|.|+.+|++|++.
T Consensus 1 ~~i~vk~~~-~-~~~~~v~~~~tv~~lk~~i-----~~~~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~ 61 (64)
T smart00213 1 IELTVKTLD-G-TITLEVKPSDTVSELKEKI-----AELTGIP--VEQQRLIYKGKVLEDDRTLADYNIQ 61 (64)
T ss_pred CEEEEEECC-c-eEEEEECCCCcHHHHHHHH-----HHHHCCC--HHHEEEEECCEECCCCCCHHHcCCc
Confidence 467888888 3 4578999999999999999 7778899 8999999999999999999999998
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.33 E-value=3.8e-12 Score=81.91 Aligned_cols=71 Identities=20% Similarity=0.103 Sum_probs=58.0
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC-CCCCcccCCccccCCCCCee
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE-NDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~-D~~tL~~~~i~~~~~~~~~~ 86 (119)
+.|.=..+.|.. ..+.+++++||++||++| +..+++| +++||| |.|+.|. |+.+|++|++.. +|+
T Consensus 3 ~~~~~~~~~~~t-~~l~v~~~~TV~~lK~kI-----~~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~---~g~-- 68 (75)
T cd01799 3 VSVEDAQSHTVT-IWLTVRPDMTVAQLKDKV-----FLDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRT---NGD-- 68 (75)
T ss_pred EEEeccccCCCe-EEEEECCCCcHHHHHHHH-----HHHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCC---CCC--
Confidence 344445666654 579999999999999999 8889999 999999 9999885 779999999982 468
Q ss_pred EEEEEE
Q 033457 87 TMHVVI 92 (119)
Q Consensus 87 ~vhlv~ 92 (119)
++||.+
T Consensus 69 ~~~l~~ 74 (75)
T cd01799 69 SAFLYI 74 (75)
T ss_pred EEEEEe
Confidence 777753
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.22 E-value=2.7e-11 Score=74.47 Aligned_cols=67 Identities=34% Similarity=0.503 Sum_probs=56.8
Q ss_pred EEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEEE
Q 033457 12 FRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVV 91 (119)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv 91 (119)
++..+|.. ..+.+++++||++||++| +...++| ++.|+|+|.|+.|+|+.+|++|++. ++. .+|+.
T Consensus 2 v~~~~~~~-~~~~~~~~~ti~~lK~~i-----~~~~~~~--~~~~~l~~~g~~l~d~~~l~~~~v~----~~~--~i~v~ 67 (69)
T cd01769 2 VKTLTGKT-FELEVSPDDTVAELKAKI-----AAKEGVP--PEQQRLIYAGKILKDDKTLSDYGIQ----DGS--TLHLV 67 (69)
T ss_pred eEccCCCE-EEEEECCCChHHHHHHHH-----HHHHCcC--hHHEEEEECCcCCCCcCCHHHCCCC----CCC--EEEEE
Confidence 34456654 468999999999999999 6666788 9999999999999999999999999 888 77765
Q ss_pred E
Q 033457 92 I 92 (119)
Q Consensus 92 ~ 92 (119)
.
T Consensus 68 ~ 68 (69)
T cd01769 68 L 68 (69)
T ss_pred E
Confidence 4
No 35
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.18 E-value=3.8e-11 Score=81.12 Aligned_cols=64 Identities=22% Similarity=0.175 Sum_probs=57.3
Q ss_pred EEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC-CCCCcccCCccccCCCCCeeEEEEEEccCcc
Q 033457 21 CHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE-NDRTLADSRITVGDLPSGVTTMHVVIQPLVA 97 (119)
Q Consensus 21 ~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~-D~~tL~~~~i~~~~~~~~~~~vhlv~~~~~~ 97 (119)
..+.+++++||++||.+| ....++| +.+|+|+|.|+.|. |..||++|+|. +++ +++|.+..|..
T Consensus 17 ~~L~V~~~~TVg~LK~lI-----mQ~f~V~--P~dQkL~~dG~~L~DDsrTLssyGv~----sgS--vl~LlideP~~ 81 (107)
T cd01795 17 KALLVSANQTLKELKIQI-----MHAFSVA--PFDQNLSIDGKILSDDCATLGTLGVI----PES--VILLKADEPIA 81 (107)
T ss_pred ceEEeCccccHHHHHHHH-----HHHhcCC--cccceeeecCceeccCCccHHhcCCC----CCC--EEEEEecCCcc
Confidence 367899999999999999 8888999 99999999999995 66999999999 999 88998876644
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.15 E-value=9.9e-11 Score=73.62 Aligned_cols=71 Identities=30% Similarity=0.401 Sum_probs=62.1
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCC-CcEEEEEcceeeCCCCCcccCCccccCCCCCee
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI-NDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~-~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
|+|+++..+|+. ..+.+.+++++..|++.+ +...++| . +.++|+|.|+.|.++.|++++++. +++
T Consensus 1 I~i~v~~~~~~~-~~~~v~~~~~~~~l~~~~-----~~~~~i~--~~~~~~l~fdG~~L~~~~T~~~~~ie----d~d-- 66 (72)
T PF11976_consen 1 ITIKVRSQDGKE-IKFKVKPTTTVSKLIEKY-----CEKKGIP--PEESIRLIFDGKRLDPNDTPEDLGIE----DGD-- 66 (72)
T ss_dssp EEEEEEETTSEE-EEEEEETTSCCHHHHHHH-----HHHHTTT--T-TTEEEEETTEEE-TTSCHHHHT-S----TTE--
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHhhCCC--ccceEEEEECCEEcCCCCCHHHCCCC----CCC--
Confidence 688999999974 578999999999999999 7788898 7 999999999999999999999999 999
Q ss_pred EEEEEE
Q 033457 87 TMHVVI 92 (119)
Q Consensus 87 ~vhlv~ 92 (119)
++++++
T Consensus 67 ~Idv~I 72 (72)
T PF11976_consen 67 TIDVII 72 (72)
T ss_dssp EEEEE-
T ss_pred EEEEEC
Confidence 888764
No 37
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.07 E-value=8.5e-10 Score=72.18 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=58.6
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEE-EEcce-----ee-CCCCCcccCCccccC
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKL-IHAGK-----IL-ENDRTLADSRITVGD 80 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrL-i~~Gk-----~L-~D~~tL~~~~i~~~~ 80 (119)
+.|.+..+.........+++++||.+||++| +...++| +..||| +|.|+ .| +|+.+|++|++.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl-----~~~~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~--- 71 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKL-----ELVVGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVD--- 71 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHH-----HHHHCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCC---
Confidence 4455555543333344599999999999999 7788999 999999 58998 46 688899999999
Q ss_pred CCCCeeEEEEEEcc
Q 033457 81 LPSGVTTMHVVIQP 94 (119)
Q Consensus 81 ~~~~~~~vhlv~~~ 94 (119)
+|. .||++-..
T Consensus 72 -dg~--~IhVvD~~ 82 (84)
T cd01789 72 -DGC--RIHVIDVS 82 (84)
T ss_pred -CCC--EEEEEeCC
Confidence 999 99987543
No 38
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.05 E-value=3.3e-10 Score=90.15 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=61.4
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccC--CCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTI--TPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~--~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
+.|+|+...+.. ..+++.|++||..||.+| +...+ +| .++|+|||+||+|.|+.++.+|+|. ++..
T Consensus 1 m~lt~KtL~q~~-F~iev~Pe~tV~evK~kI-----et~~g~dyP--~~~QkLIy~GkiL~D~~tv~Eykv~----E~~f 68 (340)
T KOG0011|consen 1 MKLTVKTLKQQT-FTIEVKPEDTVVEVKKKI-----ETEKGPDYP--AEQQKLIYSGKILKDETTVGEYKVK----EKKF 68 (340)
T ss_pred CeeEeeeccCce-eEeecCcchhHHHHHHHH-----HhccCCCCc--hhhheeeecceeccCCcchhhhccc----cCce
Confidence 368899888865 488999999999999999 55444 99 9999999999999999999999999 8775
Q ss_pred eEEEEEEcc
Q 033457 86 TTMHVVIQP 94 (119)
Q Consensus 86 ~~vhlv~~~ 94 (119)
++| ++.+.
T Consensus 69 iVv-MlsK~ 76 (340)
T KOG0011|consen 69 IVV-MLSKD 76 (340)
T ss_pred EEE-EEecC
Confidence 443 33444
No 39
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.9e-10 Score=99.22 Aligned_cols=74 Identities=16% Similarity=0.343 Sum_probs=67.1
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEE
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTM 88 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~v 88 (119)
+|+++..|.. +++|.|+..+||.++|.+| ....+|+ ...|||||+||+|.|++++.+|+|. |. +|
T Consensus 4 ~v~vktld~r-~~t~~ig~q~ti~~~~d~~-----r~~~ni~--s~~qr~i~~grvl~~~k~vq~~~vd-----gk--~~ 68 (1143)
T KOG4248|consen 4 NVLVKTLDSR-TRTFIIGAQMTIKEFKDHI-----RASVNIP--SEKQRLIYQGRVLQDDKKVQEYNVD-----GK--VI 68 (1143)
T ss_pred ceeeeecccc-eeEEEechHHHHHHHHHHH-----HHhcccc--cccceeeecceeeccchhhhhccCC-----Ce--EE
Confidence 4888888874 5789999999999999999 7778899 9999999999999999999999996 78 99
Q ss_pred EEEEccCcc
Q 033457 89 HVVIQPLVA 97 (119)
Q Consensus 89 hlv~~~~~~ 97 (119)
|||-|++.+
T Consensus 69 hlverppp~ 77 (1143)
T KOG4248|consen 69 HLVERPPPQ 77 (1143)
T ss_pred EeeccCCCC
Confidence 999997755
No 40
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.98 E-value=1.8e-09 Score=72.72 Aligned_cols=88 Identities=28% Similarity=0.340 Sum_probs=58.9
Q ss_pred EEEEeCCC-ceeEEEeec--CCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCee
Q 033457 10 LKFRIYDG-TDICHGTYA--SSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 10 ik~~~~~g-~~~~~~~~~--~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
|.+||+++ -| .++.|. .++||..||+.|...+|.+ .+-..+||||+||+|.|...|+.--.. +
T Consensus 3 l~IRFs~sipD-l~L~I~~~~~~Tv~~LK~lIR~~~p~~-----~s~~rLRlI~~Gr~L~d~t~l~~~l~~----~---- 68 (97)
T PF10302_consen 3 LTIRFSDSIPD-LPLDIPSPNTTTVAWLKQLIRERLPPE-----PSRRRLRLIYAGRLLNDHTDLSSELKL----P---- 68 (97)
T ss_pred EEEEECCCCCC-ceeecCCCCcccHHHHHHHHHhhcCCC-----CccccEEeeecCcccCccchhhhhhcc----c----
Confidence 55666663 23 357777 8899999999997777543 347999999999999998888764222 1
Q ss_pred EEEEEEccCccccccchhhh-cccCCCceEEee
Q 033457 87 TMHVVIQPLVAKKKTEKTKE-EMQKQNSCACII 118 (119)
Q Consensus 87 ~vhlv~~~~~~~~~~~~~~~-~~~~~~~c~C~i 118 (119)
.....+.+++.+. .++...+.+|+|
T Consensus 69 -------~~~~~~~~gk~~~~~~~~~~yIhCsI 94 (97)
T PF10302_consen 69 -------TARSSKGKGKAPERQEAPRIYIHCSI 94 (97)
T ss_pred -------cccCccccCcCccCCCCCeEEEEEec
Confidence 0111222233222 466778999987
No 41
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.78 E-value=6.8e-08 Score=58.60 Aligned_cols=70 Identities=31% Similarity=0.482 Sum_probs=60.5
Q ss_pred EEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEEE
Q 033457 12 FRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVV 91 (119)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv 91 (119)
+....|+. ..+.+.+..+|..+|.+| +...++| .++|+|.|.|+.|+|+.+|.+|+|. .+. ++|++
T Consensus 4 ~~~~~gk~-~~~~~~~~~~i~~~k~~i-----~~~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~----~~~--~~~l~ 69 (75)
T KOG0001|consen 4 VKTLDGKT-ITLEVSPSDTIEVVKAKI-----RDKEGIP--VDQQRLIFGGKPLEDGRTLADYNIQ----EGS--TLHLV 69 (75)
T ss_pred EEecCCCE-EEEEecCCCHHHHHHHHH-----HhhcCCC--CeeEEEEECCEECcCCCcHHHhCCC----CCC--EEEEE
Confidence 33445653 578999999999999999 7788899 9999999999999999999999999 888 88988
Q ss_pred EccC
Q 033457 92 IQPL 95 (119)
Q Consensus 92 ~~~~ 95 (119)
.+..
T Consensus 70 ~~~~ 73 (75)
T KOG0001|consen 70 LSLR 73 (75)
T ss_pred EecC
Confidence 7764
No 42
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.63 E-value=1.2e-07 Score=62.01 Aligned_cols=73 Identities=29% Similarity=0.316 Sum_probs=55.5
Q ss_pred EEEEEEeCCCc-eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEc----ce---ee-CCCCCcccCCccc
Q 033457 8 VELKFRIYDGT-DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA----GK---IL-ENDRTLADSRITV 78 (119)
Q Consensus 8 i~ik~~~~~g~-~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~----Gk---~L-~D~~tL~~~~i~~ 78 (119)
|.|.|...... ......+++++||.+||++| +...|+| ++.|||.+. |. .| +|..+|++|++.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl-----~~~~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~- 73 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKL-----EKLTGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK- 73 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHH-----HHHHTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S-
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHH-----HHHhCCC--cccEEEEEEecCCCccccccCCCccEeecCCCC-
Confidence 56666666542 24467899999999999999 8889999 999999997 11 23 578999999999
Q ss_pred cCCCCCeeEEEEEEc
Q 033457 79 GDLPSGVTTMHVVIQ 93 (119)
Q Consensus 79 ~~~~~~~~~vhlv~~ 93 (119)
+|. .||++=.
T Consensus 74 ---dg~--~i~V~D~ 83 (87)
T PF14560_consen 74 ---DGM--RIHVVDT 83 (87)
T ss_dssp ---TTE--EEEEEE-
T ss_pred ---CCC--EEEEEeC
Confidence 999 8887644
No 43
>PLN02560 enoyl-CoA reductase
Probab=98.62 E-value=7.8e-08 Score=76.51 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=55.8
Q ss_pred EEEEEeCCCcee--EEEeecCCccHHHHHHHcccccCCCccCC-CCCCCcEEEEEc---c----eeeCCCCCcccCCccc
Q 033457 9 ELKFRIYDGTDI--CHGTYASSTTVATLKQQLVAEWPQGKTIT-PKSINDVKLIHA---G----KILENDRTLADSRITV 78 (119)
Q Consensus 9 ~ik~~~~~g~~~--~~~~~~~~~TV~~LK~~I~~~wp~~~~~~-p~~~~~qrLi~~---G----k~L~D~~tL~~~~i~~ 78 (119)
.|.++..+|+.. ..+++++++||++||++| +...+. + +++|||++. | +.|.|+++|+++++.
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~I-----sk~~~~~~--~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~- 73 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAI-----HKRKKKYY--PSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLG- 73 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHH-----HHHcCCCC--hhheEEEEecCCCCcCccccCCCCCHHhcCCC-
Confidence 466667778765 478999999999999999 666654 6 899999983 4 488999999999999
Q ss_pred cCCCCCeeEEEE
Q 033457 79 GDLPSGVTTMHV 90 (119)
Q Consensus 79 ~~~~~~~~~vhl 90 (119)
+++ ++++
T Consensus 74 ---~gs--tLy~ 80 (308)
T PLN02560 74 ---DGG--TVVF 80 (308)
T ss_pred ---CCc--eEEE
Confidence 888 6553
No 44
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.59 E-value=1.1e-07 Score=65.62 Aligned_cols=78 Identities=26% Similarity=0.322 Sum_probs=57.9
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCC-CCCee
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDL-PSGVT 86 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~-~~~~~ 86 (119)
+.|.+|.-- .+.-....+++||.+||+.| ++-...| +.+|||+..+.+|+|++||++||+....+ ...+.
T Consensus 3 vFlmIrR~K--TTiF~dakes~tVlelK~~i-----egI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA 73 (119)
T cd01788 3 VFLMIRRHK--TTIFTDAKESTTVYELKRIV-----EGILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPA 73 (119)
T ss_pred eEEEEEecc--eEEEeecCCcccHHHHHHHH-----HHHhcCC--hhHheeecCceeecccccHHHcCccccccccCCCC
Confidence 345555443 23346788999999999999 8888899 99999998889999999999999952211 12333
Q ss_pred EEEEEEcc
Q 033457 87 TMHVVIQP 94 (119)
Q Consensus 87 ~vhlv~~~ 94 (119)
+|=|.++.
T Consensus 74 ~vgLa~r~ 81 (119)
T cd01788 74 TVGLAFRS 81 (119)
T ss_pred eEEEEEec
Confidence 66666663
No 45
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.44 E-value=3.4e-07 Score=58.63 Aligned_cols=52 Identities=29% Similarity=0.388 Sum_probs=42.8
Q ss_pred cCCccHHHHHHHcccccCCCcc-CCCCCCCcEEE--EEcceeeCCCCCcccCCccccCCCCCeeEEEE
Q 033457 26 ASSTTVATLKQQLVAEWPQGKT-ITPKSINDVKL--IHAGKILENDRTLADSRITVGDLPSGVTTMHV 90 (119)
Q Consensus 26 ~~~~TV~~LK~~I~~~wp~~~~-~~p~~~~~qrL--i~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhl 90 (119)
+++.||.+||+.| +... .++ +++||| ++.|+.|.|+.+|++|++. +|+ ++|+
T Consensus 20 ~~~aTV~dlk~~i-----~~~~~~~~--~~Rqrl~~~~~g~~L~d~~tL~~~gv~----~g~--~lyv 74 (77)
T cd01801 20 SGDATIADLKKLI-----AKSSPQLT--VNRQSLRLEPKGKSLKDDDTLVDLGVG----AGA--TLYV 74 (77)
T ss_pred CCCccHHHHHHHH-----HHHcCCCC--cceeEEEeCCCCcccCCcccHhhcCCC----CCC--EEEE
Confidence 5889999999999 4443 345 788887 5899999999999999999 888 7764
No 46
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.3e-07 Score=72.71 Aligned_cols=74 Identities=23% Similarity=0.392 Sum_probs=60.2
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
+-|+|+-.+.+...++.++.+++|.+||+.+ +...++| ++++|+||+||.|.|+.++..+++. ..+ .
T Consensus 3 ~lvqf~~~~~~h~l~v~v~~~t~I~~lke~V-----ak~~gvp--~D~L~viFaGKeLs~~ttv~~cDL~----qqs--~ 69 (446)
T KOG0006|consen 3 VLVQFNKTGSSHGLPVEVDSDTSIFQLKEVV-----AKRQGVP--ADQLRVIFAGKELSNDTTVQNCDLS----QQS--A 69 (446)
T ss_pred EEEEeCCccccCceeEEEecCCCHHHHHHHH-----HHhhCCC--hhheEEEEeccccccCceeeccccc----ccc--h
Confidence 3456664443334578999999999999999 8888999 9999999999999999999998887 556 6
Q ss_pred EEEE-Ecc
Q 033457 88 MHVV-IQP 94 (119)
Q Consensus 88 vhlv-~~~ 94 (119)
+|++ .||
T Consensus 70 ~hi~~lRP 77 (446)
T KOG0006|consen 70 THIMLLRP 77 (446)
T ss_pred hhhhccCc
Confidence 7776 444
No 47
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.30 E-value=2.6e-06 Score=48.75 Aligned_cols=67 Identities=31% Similarity=0.382 Sum_probs=53.2
Q ss_pred EEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEEE
Q 033457 12 FRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVV 91 (119)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv 91 (119)
+++.+|.. ..+.+++.+|+.+||+.| ....+.+ +..++|++.|..+.+...+.++++. +++ .++++
T Consensus 2 v~~~~~~~-~~~~~~~~~tv~~l~~~i-----~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~----~~~--~i~~~ 67 (69)
T cd00196 2 VKLNDGKT-VELLVPSGTTVADLKEKL-----AKKLGLP--PEQQRLLVNGKILPDSLTLEDYGLQ----DGD--ELVLV 67 (69)
T ss_pred eEecCCCE-EEEEcCCCCcHHHHHHHH-----HHHHCcC--hHHeEEEECCeECCCCCcHHHcCCC----CCC--EEEEE
Confidence 34446643 467888999999999999 4444467 8999999999999998888888888 888 77665
Q ss_pred E
Q 033457 92 I 92 (119)
Q Consensus 92 ~ 92 (119)
.
T Consensus 68 ~ 68 (69)
T cd00196 68 P 68 (69)
T ss_pred e
Confidence 3
No 48
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=98.29 E-value=5.3e-06 Score=53.21 Aligned_cols=75 Identities=25% Similarity=0.481 Sum_probs=56.5
Q ss_pred CCCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCC-cEEEE--EcceeeCCC--CCcccCCc
Q 033457 2 GEGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSIN-DVKLI--HAGKILEND--RTLADSRI 76 (119)
Q Consensus 2 ~~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~-~qrLi--~~Gk~L~D~--~tL~~~~i 76 (119)
|+.++.++|+||++||+.. .-.|.+++||.+|.+-|..+ ...+ .. ..+|+ |-.+.|.+. .+|+++++
T Consensus 1 ~~~~~~~~I~vRlpdG~~l-~~~F~~~~tl~~l~~~v~~~-----~~~~--~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l 72 (82)
T PF00789_consen 1 SEESDVVRIQVRLPDGSRL-QRRFPKSDTLQDLYDFVESQ-----LFSP--EESDFELITAFPRRELTDEDSKTLEEAGL 72 (82)
T ss_dssp -STSSEEEEEEEETTSTEE-EEEEETTSBHHHHHHHHHHH-----HHCT--TTSSEEEEESSSTEECCSTTTSBTCCCTT
T ss_pred CCCCCEEEEEEECCCCCEE-EEEECCcchHHHHHHHHHHh-----cCCC--CCccEEEEeCCCCcCCCccccccHHHhcC
Confidence 4668999999999999865 67999999999999999433 3333 22 36776 567788544 69999998
Q ss_pred cccCCCCCeeEEEE
Q 033457 77 TVGDLPSGVTTMHV 90 (119)
Q Consensus 77 ~~~~~~~~~~~vhl 90 (119)
- +.. +|+|
T Consensus 73 ~----p~~--~l~v 80 (82)
T PF00789_consen 73 L----PSA--TLIV 80 (82)
T ss_dssp S----SCE--EEEE
T ss_pred C----CCe--EEEE
Confidence 8 777 6655
No 49
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.23 E-value=1.6e-06 Score=56.41 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=40.6
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEc---ceee--CCCCCcccCCccccC
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA---GKIL--ENDRTLADSRITVGD 80 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~---Gk~L--~D~~tL~~~~i~~~~ 80 (119)
+.+-||||..+|. .-+++++++|+.+|+++| ++..++| ...+.|... ...| .++.+|+++++.
T Consensus 3 ~~milRvrS~dG~--~Rie~~~~~t~~~L~~kI-----~~~l~~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglk--- 70 (80)
T PF11543_consen 3 SSMILRVRSKDGM--KRIEVSPSSTLSDLKEKI-----SEQLSIP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLK--- 70 (80)
T ss_dssp ---EEEEE-SSEE--EEEEE-TTSBHHHHHHHH-----HHHS-----TTT---BSSGGGGGCSSS-TT-CCCCT------
T ss_pred ccEEEEEECCCCC--EEEEcCCcccHHHHHHHH-----HHHcCCC--CcceEEEecCCCCcccccCCcCCHHHcCCC---
Confidence 4788999999995 347999999999999999 6666677 667766432 1244 478999999999
Q ss_pred CCCCeeEEEE
Q 033457 81 LPSGVTTMHV 90 (119)
Q Consensus 81 ~~~~~~~vhl 90 (119)
.|+ .++|
T Consensus 71 -HGd--mlyL 77 (80)
T PF11543_consen 71 -HGD--MLYL 77 (80)
T ss_dssp -TT---EEE-
T ss_pred -Ccc--EEEE
Confidence 889 6655
No 50
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.43 E-value=0.00079 Score=43.49 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=50.2
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--EcceeeC-CCCCcccCCcc
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKILE-NDRTLADSRIT 77 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L~-D~~tL~~~~i~ 77 (119)
+-+.+|.||++||+.. ...|..++||++|.+-|.++.|+. . .....|. |-.|.|. ++.||+++|+.
T Consensus 2 ~p~t~iqiRlpdG~r~-~~rF~~~~tv~~l~~~v~~~~~~~----~--~~~f~L~t~fP~k~l~~~~~Tl~eagL~ 70 (79)
T cd01770 2 EPTTSIQIRLADGKRL-VQKFNSSHRVSDVRDFIVNARPEF----A--ARPFTLMTAFPVKELSDESLTLKEANLL 70 (79)
T ss_pred CCeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHhCCCC----C--CCCEEEecCCCCcccCCCCCcHHHCCCc
Confidence 3468999999999865 569999999999999996654421 1 3455565 6678774 57899999998
No 51
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.39 E-value=0.00014 Score=49.06 Aligned_cols=61 Identities=30% Similarity=0.419 Sum_probs=49.0
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc--eeeCCCCCcccCCcc
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG--KILENDRTLADSRIT 77 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G--k~L~D~~tL~~~~i~ 77 (119)
+.|++|-.-. ..-+..+++.||.+||+++ ++-...| ++.|||.... ++|+|..+|+++|..
T Consensus 3 ~f~~VrR~kt--tif~da~es~tV~elK~~l-----~gi~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHKT--TIFTDAKESSTVFELKRKL-----EGILKRP--VNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeeecce--eEEeecCccccHHHHHHHH-----HHHHhCC--CcchheeecCHHHHhhccchhhhcccc
Confidence 4566665543 3346788999999999999 8778889 9999998844 588999999999776
No 52
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.39 E-value=0.00086 Score=43.28 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=49.9
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEc---c--eeeCCCCCcccCCcc
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA---G--KILENDRTLADSRIT 77 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~---G--k~L~D~~tL~~~~i~ 77 (119)
|++++.-.++.+. .+.++|..+|..||++|+.+| +++ ..|||-|+ | +.|.+..+|++|||=
T Consensus 1 iqVtV~q~g~~dl-~l~vnPy~pI~k~K~kI~~~~-----~~~---g~qrLsfQepgg~rqlL~s~~sLA~yGiF 66 (80)
T cd01811 1 IQVTVEQTGYSDW-ILRVNPYSPIRKIKEKIRRSR-----NCS---GLQRLSFQEPGGERQLLSSRKSLADYGIF 66 (80)
T ss_pred CEEEeeecCCCce-EEEeCCcchHHHHHHHHHHhh-----Ccc---cceEEEeecCCcccccccccccHhhhcce
Confidence 4677777788775 689999999999999996554 455 79999994 3 377899999999997
No 53
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.36 E-value=0.00094 Score=42.78 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=49.7
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--EcceeeCC---CCCcccCCcccc
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKILEN---DRTLADSRITVG 79 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L~D---~~tL~~~~i~~~ 79 (119)
+...+|.||++||+.+ .-.|.+++||.+|.+-|... .+.. ....+|+ |-.|.|.+ +.+|.+.++-
T Consensus 2 ~~~~~I~iRlPdG~ri-~~~F~~~~tl~~v~~~v~~~-----~~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~-- 71 (80)
T smart00166 2 SDQCRLQIRLPDGSRL-VRRFPSSDTLRTVYEFVSAA-----LTDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALL-- 71 (80)
T ss_pred CCeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHc-----ccCC--CCCEEEEeCCCCcCCccccccCCHHHCCCC--
Confidence 3578999999999865 57899999999999998332 2223 3345554 55667753 4789999987
Q ss_pred CCCCC
Q 033457 80 DLPSG 84 (119)
Q Consensus 80 ~~~~~ 84 (119)
+..
T Consensus 72 --p~~ 74 (80)
T smart00166 72 --PSS 74 (80)
T ss_pred --Cce
Confidence 766
No 54
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0029 Score=42.79 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=59.3
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
+-|+||+.=-+| .+..|.+..++....|+..- .+..+++ .+.+|++|.|+.+.+..|-++++.. +++
T Consensus 19 ~hi~LKV~gqd~-~~~~Fkikr~t~LkKLM~aY-----c~r~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mE----d~D- 85 (99)
T KOG1769|consen 19 EHINLKVKGQDG-SVVVFKIKRHTPLKKLMKAY-----CERQGLS--MNSLRFLFDGQRIRETHTPADLEME----DGD- 85 (99)
T ss_pred ceEEEEEecCCC-CEEEEEeecCChHHHHHHHH-----HHHcCCc--cceEEEEECCcCcCCCCChhhhCCc----CCc-
Confidence 345555554334 45579999999999999988 7778888 9999999999999999999999999 888
Q ss_pred eEEEEEEc
Q 033457 86 TTMHVVIQ 93 (119)
Q Consensus 86 ~~vhlv~~ 93 (119)
.|-++..
T Consensus 86 -~Iev~~~ 92 (99)
T KOG1769|consen 86 -EIEVVQE 92 (99)
T ss_pred -EEEEEee
Confidence 5554433
No 55
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.18 E-value=0.0028 Score=41.48 Aligned_cols=67 Identities=13% Similarity=0.306 Sum_probs=51.7
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc--eeeC--------CCCCcccC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG--KILE--------NDRTLADS 74 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G--k~L~--------D~~tL~~~ 74 (119)
.+.++|.||+++|+.. .-.|..++||..|..-|.. ++ .. +....|+++= |.+. .+.||.+.
T Consensus 2 ~~~~~I~iRlp~G~Rl-~rrF~~~~tl~~l~~fv~~-~~-----~~--~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ea 72 (85)
T cd01774 2 PDTVKIVFKLPNGTRV-ERRFLFTQSLRVIHDFLFS-LK-----ET--PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEA 72 (85)
T ss_pred CceEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHh-CC-----CC--CCcEEEecCCCCccccccccccCcCCCCHHHc
Confidence 3578999999999865 5689999999999999932 21 23 5778887765 7775 36799999
Q ss_pred CccccCCCCC
Q 033457 75 RITVGDLPSG 84 (119)
Q Consensus 75 ~i~~~~~~~~ 84 (119)
|+. +..
T Consensus 73 GL~----~s~ 78 (85)
T cd01774 73 GLS----NSE 78 (85)
T ss_pred CCC----Ccc
Confidence 998 766
No 56
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00095 Score=55.76 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=59.4
Q ss_pred EEEEEeCCCceeEEEe-ecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 9 ELKFRIYDGTDICHGT-YASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~-~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
.|.++-. | +..++. ++.+.|+..||++| -...+++ |++||+.+.|+.|.|+..+....|. |+. +
T Consensus 5 ~v~VKW~-g-k~y~v~~l~~d~t~~vlKaql-----f~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iK----pn~--~ 69 (473)
T KOG1872|consen 5 TVIVKWG-G-KKYPVETLSTDETPSVLKAQL-----FALTGVP--PERQKVMVKGGLAKDDVDWGALQIK----PNE--T 69 (473)
T ss_pred eEeeeec-C-ccccceeccCCCchHHHHHHH-----HHhcCCC--ccceeEEEecccccccccccccccC----CCC--E
Confidence 3444433 3 345666 99999999999999 7788999 9999999999999999999999999 999 8
Q ss_pred EEEEEccC
Q 033457 88 MHVVIQPL 95 (119)
Q Consensus 88 vhlv~~~~ 95 (119)
+|++-..-
T Consensus 70 lmMmGt~e 77 (473)
T KOG1872|consen 70 LMMMGTAE 77 (473)
T ss_pred EEeecccc
Confidence 88766544
No 57
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.16 E-value=0.0022 Score=40.66 Aligned_cols=62 Identities=15% Similarity=0.371 Sum_probs=46.7
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--EcceeeC---CCCCcccCCcc
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKILE---NDRTLADSRIT 77 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L~---D~~tL~~~~i~ 77 (119)
+.+|+||++||+.. .-.|..++||.+|.+-|..+... ....+|+ |-.|.|. ++.+|.++|+.
T Consensus 2 ~t~i~iRlpdG~~~-~~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~ 68 (77)
T cd01767 2 TTKIQIRLPDGKRL-EQRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLV 68 (77)
T ss_pred cEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCc
Confidence 47899999999764 57899999999999999554321 3445555 4456774 47899999998
No 58
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.00038 Score=52.93 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=56.2
Q ss_pred eEEEEEEeC-CCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 7 CVELKFRIY-DGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 7 ~i~ik~~~~-~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
+..+|.+++ .++++ -+.....+||.++|.++ ...++.. +-.||++|+|++|.|...|.+|+|. .|.-
T Consensus 145 e~~lk~rlTtT~~d~-~lta~~~Dtv~eik~~L-----~Aaeg~D--~~sQrif~Sg~~l~dkt~LeEc~ie----kg~r 212 (231)
T KOG0013|consen 145 EPILKLRLTTTREDF-WLTAPHYDTVGEIKRAL-----RAAEGVD--PLSQRIFFSGGVLVDKTDLEECKIE----KGQR 212 (231)
T ss_pred CcchHHHhhhhhhhe-eecccCcCcHHHHHHHH-----HHhhccc--hhhheeeccCCceeccccceeeeec----CCCE
Confidence 456677777 35544 46788899999999999 5555666 7899999999999999999999999 8742
Q ss_pred eEEEE
Q 033457 86 TTMHV 90 (119)
Q Consensus 86 ~~vhl 90 (119)
..+.+
T Consensus 213 Yvlqv 217 (231)
T KOG0013|consen 213 YVLQV 217 (231)
T ss_pred EEEEE
Confidence 24443
No 59
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.05 E-value=0.0044 Score=39.81 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=49.2
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--EcceeeCC---CCCcccCCcccc
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKILEN---DRTLADSRITVG 79 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L~D---~~tL~~~~i~~~ 79 (119)
....+|+||+++|+.+ .-.|+.++|+.+|.+-|...+.. .....|+ |--|.+.+ +.||.++++.
T Consensus 2 ~~~~~i~iRlp~G~~~-~~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~-- 70 (79)
T cd01772 2 YTETRIQIRLLDGTTL-KQTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLV-- 70 (79)
T ss_pred CcEEEEEEECCCCCEE-EEEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCC--
Confidence 3568999999999754 56899999999999999554321 1334444 45667743 4799999998
Q ss_pred CCCCC
Q 033457 80 DLPSG 84 (119)
Q Consensus 80 ~~~~~ 84 (119)
|..
T Consensus 71 --Psa 73 (79)
T cd01772 71 --PSA 73 (79)
T ss_pred --Cce
Confidence 766
No 60
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=3.5e-05 Score=62.03 Aligned_cols=83 Identities=24% Similarity=0.211 Sum_probs=55.2
Q ss_pred ceeEEEEEEeCCCc--eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCC
Q 033457 5 EECVELKFRIYDGT--DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLP 82 (119)
Q Consensus 5 ~~~i~ik~~~~~g~--~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~ 82 (119)
|..+++-++.++.+ |. .+..+..+||++||.++..-.|. .+-..+|||||+||.|.|...|++.=+. .
T Consensus 7 e~~v~lliks~Nq~y~dl-~i~~dl~wtv~~Lk~hls~VyPs-----kpl~~dqrliYsgkllld~qcl~d~lrk----q 76 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDL-SISLDLKWTVGDLKVHLSQVYPS-----KPLELDQRLIYSGKLLLDHQCLTDWLRK----Q 76 (391)
T ss_pred CcceEEEecCCCccccce-eeehhhhhhHHHHhhhHhhcCCC-----CCchhhHHHHhhccccccchhHHHHHHH----H
Confidence 44555555555532 22 35667889999999999333332 2235899999999999999999887443 2
Q ss_pred CCeeEEEEEEccCcc
Q 033457 83 SGVTTMHVVIQPLVA 97 (119)
Q Consensus 83 ~~~~~vhlv~~~~~~ 97 (119)
..-.++|||...+.+
T Consensus 77 ~k~Hv~hlvcnsk~v 91 (391)
T KOG4583|consen 77 VKEHVKHLVCNSKEV 91 (391)
T ss_pred HHHHHHHHhcCCCCC
Confidence 222267777776655
No 61
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.78 E-value=0.0047 Score=39.50 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=47.9
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE-EcceeeCCCCCcccCCccccCCCCCe
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI-HAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi-~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
.++|.|...+|+ ...+.++.+.+|++|...|....-......+ .....+|. -.|..|+++.+|++++|. +|+
T Consensus 2 ~~rVtv~~~~~~-~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~-~~~~~~L~~~~g~~L~~~~tL~~~gV~----dGd- 74 (79)
T PF08817_consen 2 LCRVTVDAGNGR-QVDLALPADVPVAELIPELVELLGLPGDDPP-GHGQWVLARAGGRPLDPDQTLADAGVR----DGD- 74 (79)
T ss_dssp EEEEEEE-TT---EEEEEEETTSBTTHHHHHHHHHS---S---T-T-E-EEEG-GGTEEEETTSBCGGGT------TT--
T ss_pred EEEEEEEcCCCc-EEEEEcCCCCcHHHHHHHHHHHhCCccCCCC-CcceEEEEecCCcccCCcCcHhHcCCC----CCC-
Confidence 467888887654 4578999999999999999543211111111 01256776 679999999999999999 999
Q ss_pred eEEEE
Q 033457 86 TTMHV 90 (119)
Q Consensus 86 ~~vhl 90 (119)
+++|
T Consensus 75 -~L~L 78 (79)
T PF08817_consen 75 -VLVL 78 (79)
T ss_dssp -EEEE
T ss_pred -EEEe
Confidence 6654
No 62
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.62 E-value=0.017 Score=37.36 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=51.1
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--EcceeeC---CCCCcccCCccc
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKILE---NDRTLADSRITV 78 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L~---D~~tL~~~~i~~ 78 (119)
|+..++|.||+++|+.. .-.+..++++..|-.-|.. .+.+ ....+|+ |--|.+. .+.||.+.|+.
T Consensus 1 ~~~~~~i~iRlP~G~r~-~rrF~~t~~L~~l~~fv~~------~~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~- 70 (80)
T cd01771 1 GEPISKLRVRTPSGDFL-ERRFLGDTPLQVLLNFVAS------KGYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLY- 70 (80)
T ss_pred CCCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHh------cCCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCC-
Confidence 46789999999999754 5689999999999999832 2444 4566665 4556663 34689999988
Q ss_pred cCCCCC
Q 033457 79 GDLPSG 84 (119)
Q Consensus 79 ~~~~~~ 84 (119)
+..
T Consensus 71 ---p~~ 73 (80)
T cd01771 71 ---PQE 73 (80)
T ss_pred ---CCc
Confidence 766
No 63
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.52 E-value=0.026 Score=36.19 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=44.8
Q ss_pred ecCCccHHHHHHHcccccCCCccC-CCCCCCcEEEEEcceeeCCCCCcccC-CccccCCCCCeeEEEEEEcc
Q 033457 25 YASSTTVATLKQQLVAEWPQGKTI-TPKSINDVKLIHAGKILENDRTLADS-RITVGDLPSGVTTMHVVIQP 94 (119)
Q Consensus 25 ~~~~~TV~~LK~~I~~~wp~~~~~-~p~~~~~qrLi~~Gk~L~D~~tL~~~-~i~~~~~~~~~~~vhlv~~~ 94 (119)
++++++|.+|++.| .+... .. -....|.+.|+.|+|...|++. ++. ++. +++|+..+
T Consensus 1 v~~~d~v~dvrq~L-----~~~~~t~~--~Tn~~L~~~g~~L~~~~el~~i~~~~----~~~--~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVL-----AESPETCY--LTNFSLEHNGQRLDDFVELSEIEGIK----DGC--VLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHH-----HhCccccc--eeEEEEEECCCccCCchhhhhhhCCC----CCc--EEEEEecC
Confidence 46789999999999 44332 33 5889999999999999999887 577 677 88887654
No 64
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.08 E-value=0.22 Score=32.51 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=48.9
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--Ecceee---CCCCCcccCCcccc
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKIL---ENDRTLADSRITVG 79 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L---~D~~tL~~~~i~~~ 79 (119)
....+|.||+++|+.. .-.+..++++..|-.-+.+ + +.+ +....|+ |--|.+ +.+.||.++|+-
T Consensus 3 ~~~t~i~vRlP~G~r~-~rrF~~~~~L~~v~~fv~~-~-----g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~-- 71 (82)
T cd01773 3 GPKARLMLRYPDGKRE-QIALPEQAKLLALVRHVQS-K-----GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLC-- 71 (82)
T ss_pred CCeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHh-c-----CCC--CCCEEEecCCCCcccCCcccCCCHHHcCCC--
Confidence 4567899999999754 6789999999999988833 1 234 4555555 344555 335799999999
Q ss_pred CCCCC
Q 033457 80 DLPSG 84 (119)
Q Consensus 80 ~~~~~ 84 (119)
+..
T Consensus 72 --P~~ 74 (82)
T cd01773 72 --PQE 74 (82)
T ss_pred --CCc
Confidence 777
No 65
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.02 E-value=0.21 Score=36.60 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=52.5
Q ss_pred EEEEEEeCCCc---eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCc-EEEEEc-ceee--CCCCCcccCCccccC
Q 033457 8 VELKFRIYDGT---DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSIND-VKLIHA-GKIL--ENDRTLADSRITVGD 80 (119)
Q Consensus 8 i~ik~~~~~g~---~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~-qrLi~~-Gk~L--~D~~tL~~~~i~~~~ 80 (119)
|+|-+...+|. ....+.+++++||.+|+.+| .+..+.+ ... +-|.+. |+.| .++..++++.-...
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l-----~~~~~~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~- 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRL-----SERLPIP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ- 72 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHH-----HhhcCCC--ccceeEEEEeCCCeeCCCccccHHhhccCcC-
Confidence 35666666773 23457888999999999999 6666666 444 445553 4444 45566666643311
Q ss_pred CCCCeeEEEEEEccCccc
Q 033457 81 LPSGVTTMHVVIQPLVAK 98 (119)
Q Consensus 81 ~~~~~~~vhlv~~~~~~~ 98 (119)
+...++++|+++..++.
T Consensus 73 -~~~~~~l~l~~rl~GGK 89 (162)
T PF13019_consen 73 -DSDFITLRLSLRLRGGK 89 (162)
T ss_pred -CCCceEEEEEEeccCCC
Confidence 22556889988888763
No 66
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.007 Score=38.13 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=45.0
Q ss_pred CceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 17 GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 17 g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
|++++ +...+++||+++|..| +.+.+.. ++.+.|=--+-+++|.-+|++|.|- +|.
T Consensus 11 GKKVR-vKCn~dDtiGD~KKli-----aaQtGT~--~~kivl~k~~~i~kd~I~L~dyeih----dg~ 66 (73)
T KOG3493|consen 11 GKKVR-VKCNTDDTIGDLKKLI-----AAQTGTR--PEKIVLKKWYTIFKDHITLSDYEIH----DGM 66 (73)
T ss_pred CceEE-EEeCCcccccCHHHHH-----HHhhCCC--hhHhHHHhhhhhhhcccceeeEEec----cCc
Confidence 66664 6889999999999999 7777766 6666666566688999999999988 665
No 67
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.53 E-value=0.3 Score=30.50 Aligned_cols=71 Identities=20% Similarity=0.090 Sum_probs=50.7
Q ss_pred EEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE----c--ceeeCCCCCcccCCccccCCCCCe
Q 033457 12 FRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH----A--GKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~----~--Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
+++.||+. ..+.+++++|+.+|=+.| .+..++. .....=|.| . ...|+.+++|.+.... ...+
T Consensus 1 V~llD~~~-~~~~v~~~~t~~~l~~~v-----~~~l~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~----~~~~ 69 (80)
T PF09379_consen 1 VRLLDGTT-KTFEVDPKTTGQDLLEQV-----CDKLGLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK----NNPP 69 (80)
T ss_dssp EEESSEEE-EEEEEETTSBHHHHHHHH-----HHHHTTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT----SSSS
T ss_pred CCCcCCCc-EEEEEcCCCcHHHHHHHH-----HHHcCCC-CccEEEEEEeecCCCcceeccCcccHHHHcCC----CCCC
Confidence 57889864 589999999999999999 5555665 456777777 2 2467888888887554 3454
Q ss_pred eEEEEEEc
Q 033457 86 TTMHVVIQ 93 (119)
Q Consensus 86 ~~vhlv~~ 93 (119)
.++++.++
T Consensus 70 ~~l~frvk 77 (80)
T PF09379_consen 70 FTLYFRVK 77 (80)
T ss_dssp EEEEEEES
T ss_pred EEEEEEEE
Confidence 57777654
No 68
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.23 Score=33.30 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=47.8
Q ss_pred EEEEEeC--CCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCcc
Q 033457 9 ELKFRIY--DGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRIT 77 (119)
Q Consensus 9 ~ik~~~~--~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~ 77 (119)
+|.+++. +|+.+ -|.+-.+++-..|-... ....+-. .+.+|++|.|+-++-++|.++++..
T Consensus 24 hinLkvv~qd~tel-fFkiKktT~f~klm~af-----~~rqGK~--m~slRfL~dG~rI~~dqTP~dldmE 86 (103)
T COG5227 24 HINLKVVDQDGTEL-FFKIKKTTTFKKLMDAF-----SRRQGKN--MSSLRFLFDGKRIDLDQTPGDLDME 86 (103)
T ss_pred ccceEEecCCCCEE-EEEEeccchHHHHHHHH-----HHHhCcC--cceeEEEEcceecCCCCChhhcCCc
Confidence 3444544 56544 68999999999998887 4444544 8999999999999988999999888
No 69
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.00 E-value=0.57 Score=30.30 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=51.3
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCC-CCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKS-INDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~-~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
|++-|+.-+|+ ..-+.++...+|..|-..++. ...-.++.. -.++|..-.+++|.++..|.+|+|. +|+
T Consensus 7 VTvD~t~y~g~-~yDLrl~d~~pikklIdivwe---~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~Ia----dGD 76 (81)
T COG5417 7 VTVDFTNYNGG-TYDLRLPDYLPIKKLIDIVWE---SLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIA----DGD 76 (81)
T ss_pred EEEEeEecCCc-eEEEeccccchHHHHHHHHHH---HhhccccccCCCEEEEeccceEecCCceEEecccc----CCC
Confidence 45555555675 457888888888888777633 333344422 3789999999999999999999999 888
No 70
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=92.44 E-value=2.1 Score=28.20 Aligned_cols=73 Identities=8% Similarity=0.068 Sum_probs=47.1
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCC-CcEEEEEcc--eeeCCCCCcccCCccccCCC
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI-NDVKLIHAG--KILENDRTLADSRITVGDLP 82 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~-~~qrLi~~G--k~L~D~~tL~~~~i~~~~~~ 82 (119)
..+-|.-+|-+.=-...+.++..+|+.++-+++... .-...+++.+ ..+|+.+.| +.+..+.++++.+|. |
T Consensus 2 A~fPl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~H--sVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~----P 75 (85)
T PF06234_consen 2 ALFPLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHH--SVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQ----P 75 (85)
T ss_dssp -EEEEEEEETT-SBEEEEEEETT-BHHHHHHHHHTT--TTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT------T
T ss_pred cccceeEeeccceEEEEEEeCCCCcHHHHHHHHhhh--hcceecCCCCCCEEEEEecCCCccCCCccEehhcCCC----c
Confidence 346677777764344578999999999999998432 1122344334 489999999 999999999999999 7
Q ss_pred CC
Q 033457 83 SG 84 (119)
Q Consensus 83 ~~ 84 (119)
-.
T Consensus 76 ~e 77 (85)
T PF06234_consen 76 ME 77 (85)
T ss_dssp TE
T ss_pred ce
Confidence 55
No 71
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.47 Score=36.34 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=45.9
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE-Ecc-----eee-CCCCCcccCCccccCCCCCeeEEEEEEcc
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI-HAG-----KIL-ENDRTLADSRITVGDLPSGVTTMHVVIQP 94 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi-~~G-----k~L-~D~~tL~~~~i~~~~~~~~~~~vhlv~~~ 94 (119)
.-.++++.||++||.+| .-..+.+ ++.++|- |.| -.| +++..|..|+.. +|. .||++=..
T Consensus 16 Ekr~~~~ltl~q~K~KL-----e~~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~----Dg~--rihviD~~ 82 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKL-----ELLTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVE----DGL--RIHVIDSN 82 (234)
T ss_pred hhhcCCcCcHHHHHhhh-----hhhhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCC----Cce--EEEEEecC
Confidence 34678999999999999 7777888 7877774 444 245 466778999888 888 88876543
Q ss_pred C
Q 033457 95 L 95 (119)
Q Consensus 95 ~ 95 (119)
.
T Consensus 83 ~ 83 (234)
T KOG3206|consen 83 A 83 (234)
T ss_pred c
Confidence 3
No 72
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=92.05 E-value=0.28 Score=40.38 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=48.3
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--Ecceee-CCCCCcccCCcc
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKIL-ENDRTLADSRIT 77 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L-~D~~tL~~~~i~ 77 (119)
+-+=+|.|||+||+.+ ...|..+.||.+++..|...-|.+ + ...+-|+ |--|.| +|+.||++.++.
T Consensus 303 ~PtTsIQIRLanG~Rl-V~~fN~sHTv~DIR~fI~~aRp~~----~--~~~F~L~~~FPpk~l~D~sqTle~AgL~ 371 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRL-VLKFNHSHTVSDIREFIDTARPGD----S--STYFILMMAFPPKPLSDDSQTLEEAGLL 371 (380)
T ss_pred CCcceEEEEecCCcee-eeeccCcccHHHHHHHHHhcCCCC----c--CCceeeeecCCCcccCCcchhHHhccch
Confidence 4566899999999876 568999999999999996654433 2 2233333 344677 566889999998
No 73
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=91.98 E-value=1.2 Score=30.16 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=56.1
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCC-cEEEEEcce--eeCCCCCcccCC-----cc
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSIN-DVKLIHAGK--ILENDRTLADSR-----IT 77 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~-~qrLi~~Gk--~L~D~~tL~~~~-----i~ 77 (119)
..+-|.+.+.+.+....+.++++.|+.+|.+.+.+++ ....+....++ +.-|==.|+ .|..+..|.++. +.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~ 94 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLK 94 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHh
Confidence 4567777777766777899999999999999998876 33333222233 666666777 777788888873 44
Q ss_pred ccCCCCCeeEEEEEEcc
Q 033457 78 VGDLPSGVTTMHVVIQP 94 (119)
Q Consensus 78 ~~~~~~~~~~vhlv~~~ 94 (119)
.+. .+||++..
T Consensus 95 ----~~~--~~~L~L~~ 105 (108)
T smart00144 95 ----NGR--EPHLVLMT 105 (108)
T ss_pred ----cCC--CceEEEEe
Confidence 455 55665543
No 74
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=91.21 E-value=0.59 Score=29.14 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=37.9
Q ss_pred eCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 14 IYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 14 ~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
..++.. ..+.+.|++++.++-++. -...++. +++-.|.|.+|.|+-+.++.-.|++ +|.
T Consensus 3 ~~~~rr-~~vkvtp~~~l~~VL~ea-----c~k~~l~--~~~~~L~h~~k~ldlslp~R~snL~----n~a 61 (65)
T PF11470_consen 3 CYNFRR-FKVKVTPNTTLNQVLEEA-----CKKFGLD--PSSYDLKHNNKPLDLSLPFRLSNLP----NNA 61 (65)
T ss_dssp -TTS-E-EEE---TTSBHHHHHHHH-----HHHTT----GGG-EEEETTEEESSS-BHHHH-------SS-
T ss_pred ccCCcE-EEEEECCCCCHHHHHHHH-----HHHcCCC--ccceEEEECCEEeccccceeecCCC----CCC
Confidence 345644 468999999999998888 5556787 7899999999999888888888888 776
No 75
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=90.73 E-value=0.78 Score=28.70 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=35.9
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG 62 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G 62 (119)
+.||+++ |.+++.+.++++.|-.+|+++| +...+.+ ....+|-|..
T Consensus 2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i-----~~~~~~~--~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY--GGETRRLSVPRDISFEDLRSKV-----AKRFGLD--NQSFTLKYQD 47 (81)
T ss_pred ccEEEEE--CCEEEEEEECCCCCHHHHHHHH-----HHHhCCC--CCCeEEEEEC
Confidence 5677777 3367889999999999999999 6666665 5778887763
No 76
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=89.74 E-value=3.3 Score=25.66 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=32.3
Q ss_pred EEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCC
Q 033457 10 LKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEN 67 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D 67 (119)
+++++-+......++++...||.+|-+++ +++ .....+...|+++..
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l---------~~~--~~~v~v~vNg~iv~~ 51 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV---------GFN--TESAIAKVNGKVALE 51 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc---------CCC--CccEEEEECCEECCC
Confidence 44544432123467888889999999888 345 566888889998854
No 77
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.90 E-value=2.3 Score=26.27 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=39.1
Q ss_pred CceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEE
Q 033457 17 GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHV 90 (119)
Q Consensus 17 g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhl 90 (119)
|.....++++...||.+|.+.+..++|.. .... ....++...|+.... +..+. +|+ .|.+
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~-~~~~--~~~~~v~vNg~~v~~-----~~~l~----~gD--~v~i 73 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGL-LEEL--LARVRIAVNGEYVRL-----DTPLK----DGD--EVAI 73 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchH-HHhh--hhcEEEEECCeEcCC-----CcccC----CCC--EEEE
Confidence 44444567777899999999997666542 1112 356778888888763 34566 677 5544
No 78
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=88.70 E-value=2.4 Score=25.83 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=30.0
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCccc
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLAD 73 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~ 73 (119)
.+.+....|...||+++ -| .++ -+||.|-...++..|++
T Consensus 9 ~~~~~~~~tl~~lr~~~----------k~--~~D-I~I~NGF~~~~d~~L~e 47 (57)
T PF14453_consen 9 EIETEENTTLFELRKES----------KP--DAD-IVILNGFPTKEDIELKE 47 (57)
T ss_pred EEEcCCCcCHHHHHHhh----------CC--CCC-EEEEcCcccCCccccCC
Confidence 57889999999999998 22 333 56999999887666654
No 79
>PRK06437 hypothetical protein; Provisional
Probab=87.04 E-value=2.9 Score=25.78 Aligned_cols=41 Identities=17% Similarity=0.053 Sum_probs=31.8
Q ss_pred CceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCC
Q 033457 17 GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEND 68 (119)
Q Consensus 17 g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~ 68 (119)
|.....++++...||.+|=+++ +++ +..+-+...|+++..+
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L---------gi~--~~~vaV~vNg~iv~~~ 49 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL---------GLD--EEEYVVIVNGSPVLED 49 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc---------CCC--CccEEEEECCEECCCc
Confidence 4334578899999999998777 466 7888999999999733
No 80
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=86.43 E-value=2.4 Score=26.41 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=36.2
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG 62 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G 62 (119)
++.||+.+.++. ...+.+..+.|..+|+.+| +...+.+ ...++|-|..
T Consensus 1 t~~vK~~~~~~~-~~~~~~~~~~s~~~L~~~i-----~~~~~~~--~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDI-RRIISLPSDVSFDDLRSKI-----REKFGLL--DEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEE-EEEEEECSTSHHHHHHHHH-----HHHHTTS--TSSEEEEEEE
T ss_pred CEEEEEEECCee-EEEEEcCCCCCHHHHHHHH-----HHHhCCC--CccEEEEeeC
Confidence 477888888753 2238899999999999999 5444455 6888898864
No 81
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=85.53 E-value=6.7 Score=24.88 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=37.3
Q ss_pred CceeEEEeecCCccHHHHHHHcccccCCCccCC-CC---CCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 17 GTDICHGTYASSTTVATLKQQLVAEWPQGKTIT-PK---SINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 17 g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~-p~---~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
|+....++++ ..||.+|.+.|..+.|.....+ .. -...+++...|+...++.. ..++ +|+
T Consensus 14 g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~----dgd 77 (88)
T TIGR01687 14 GKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELK----DGD 77 (88)
T ss_pred CCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCC----CCC
Confidence 4333356665 8899999999988777532211 10 0245778888887764432 4566 777
No 82
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=83.84 E-value=3.7 Score=27.23 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=46.1
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce--eeCCCCCcccC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK--ILENDRTLADS 74 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk--~L~D~~tL~~~ 74 (119)
...|.|++.+.+.+....+.++.+.|+.+|-+.+..++-.. ...+...++.-|==.|+ .|..+.+|.+|
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~-~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y 84 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKD-LLPPDPEDDYVLKVCGREEYLLGDHPLSQY 84 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHH-TT-CHHHHGEEEEETTSSEEE-SSS-GGGB
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhh-cCCcccccCEEEEecCceEEeeCCeeeecc
Confidence 45788899999766777899999999999999997762111 11211122666666776 77788889888
No 83
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=83.59 E-value=1.6 Score=27.94 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=23.4
Q ss_pred EEEEeCCCceeEEEeec-CCccHHHHHHHccc
Q 033457 10 LKFRIYDGTDICHGTYA-SSTTVATLKQQLVA 40 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~-~~~TV~~LK~~I~~ 40 (119)
|.+++.+.++...+.++ ...||.+||+.|..
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~ 32 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIE 32 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHH
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHH
Confidence 46777777777777776 66899999999944
No 84
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=83.36 E-value=5.6 Score=34.35 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=47.9
Q ss_pred eeEEEEEEeCC-CceeEEEeecCCccHHHHHHHcccc-cCCCccCCCCCCCcEEEEE----cce-eeCCCC---------
Q 033457 6 ECVELKFRIYD-GTDICHGTYASSTTVATLKQQLVAE-WPQGKTITPKSINDVKLIH----AGK-ILENDR--------- 69 (119)
Q Consensus 6 ~~i~ik~~~~~-g~~~~~~~~~~~~TV~~LK~~I~~~-wp~~~~~~p~~~~~qrLi~----~Gk-~L~D~~--------- 69 (119)
+++.|.+...+ +....++.+-.-+||.++|++|... |...-...-++++++-|-+ .|+ +|+|..
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~w 267 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGW 267 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTE
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCc
Confidence 56777766443 3344578888899999999999752 2111111111346666544 244 676653
Q ss_pred ----CcccCCccccCCCCCeeEEEEEEcc
Q 033457 70 ----TLADSRITVGDLPSGVTTMHVVIQP 94 (119)
Q Consensus 70 ----tL~~~~i~~~~~~~~~~~vhlv~~~ 94 (119)
||+.|+|+ +|+ +|-|+.+.
T Consensus 268 krLNTL~HY~V~----dga--~vaLv~k~ 290 (539)
T PF08337_consen 268 KRLNTLAHYKVP----DGA--TVALVPKQ 290 (539)
T ss_dssp EE--BHHHHT------TTE--EEEEEES-
T ss_pred eEeccHhhcCCC----CCc--eEEEeecc
Confidence 45788999 988 77777665
No 85
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=82.67 E-value=2.9 Score=27.18 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=37.3
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK 63 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk 63 (119)
..||+.+.+ +..+.+.+..+..+|.++| .+...+| ++.++|-|.-.
T Consensus 3 ~vvKV~f~~---tIaIrvp~~~~y~~L~~ki-----~~kLkl~--~e~i~LsYkde 48 (80)
T cd06406 3 YVVKVHFKY---TVAIQVARGLSYATLLQKI-----SSKLELP--AEHITLSYKSE 48 (80)
T ss_pred eEEEEEEEE---EEEEEcCCCCCHHHHHHHH-----HHHhCCC--chhcEEEeccC
Confidence 345666655 4578999999999999999 8888898 89999999654
No 86
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=81.16 E-value=3.2 Score=26.84 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=31.5
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCC-CcEEEEEcc
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI-NDVKLIHAG 62 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~-~~qrLi~~G 62 (119)
+||+.+.+ +..-+.+.++.+..+|+++| ++..++. . ..+.|-|.-
T Consensus 2 ~vK~~~~~--d~~r~~l~~~~~~~~L~~~i-----~~r~~~~--~~~~f~LkY~D 47 (82)
T cd06407 2 RVKATYGE--EKIRFRLPPSWGFTELKQEI-----AKRFKLD--DMSAFDLKYLD 47 (82)
T ss_pred EEEEEeCC--eEEEEEcCCCCCHHHHHHHH-----HHHhCCC--CCCeeEEEEEC
Confidence 44554433 67789999999999999999 6555554 3 566665543
No 87
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=80.61 E-value=5.3 Score=28.58 Aligned_cols=62 Identities=26% Similarity=0.167 Sum_probs=43.6
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc------eeeCCCCCcccC
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG------KILENDRTLADS 74 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G------k~L~D~~tL~~~ 74 (119)
..+.|+|.++||+. ..+.+++++||.+|-+.+ ....+++ .....-|.+.. ..|+...+|.+.
T Consensus 2 ~~~~~~V~l~dg~~-~~~~~~~~~t~~ev~~~v-----~~~~~l~-~~~~F~L~~~~~~~~~~~~l~~~~~l~~~ 69 (207)
T smart00295 2 KPRVLKVYLLDGTT-LEFEVDSSTTAEELLETV-----CRKLGIR-ESEYFGLQFEDPDEDLSHWLDPAKTLLDQ 69 (207)
T ss_pred CcEEEEEEecCCCE-EEEEECCCCCHHHHHHHH-----HHHhCCC-ccceeEEEEEcCCCCcCeeCCCccCHHHh
Confidence 35789999999975 478999999999999999 6666665 34555555532 244444455444
No 88
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=80.55 E-value=4.5 Score=25.42 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=32.9
Q ss_pred EEEEEEeCC------CceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCC
Q 033457 8 VELKFRIYD------GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEN 67 (119)
Q Consensus 8 i~ik~~~~~------g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D 67 (119)
++|++++.+ |.+...++++...||.+|.+.|..+-|.-.. . .....+..+|+...+
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~-~---~~~~~vavN~~~v~~ 63 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEE-V---RSCCVLALNEEYTTE 63 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHH-H---hhCcEEEECCEEcCC
Confidence 346666542 4444567888899999999999544331110 0 122346677777643
No 89
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=80.23 E-value=3.7 Score=27.01 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=32.3
Q ss_pred EEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCC-CCcEEEEE
Q 033457 10 LKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKS-INDVKLIH 60 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~-~~~qrLi~ 60 (119)
.||+-++|. ++-|.+.+++++.+|++.| ....+.... .....|-|
T Consensus 3 FK~~~~~Gr-vhRf~~~~s~~~~~L~~~I-----~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGR-VHRFRLRPSESLEELRTLI-----SQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCC-EEEEEecCCCCHHHHHHHH-----HHHhCCccccCCcccEEE
Confidence 578888885 5678999999999999999 555555410 14555655
No 90
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=79.27 E-value=5 Score=24.75 Aligned_cols=46 Identities=17% Similarity=0.082 Sum_probs=32.6
Q ss_pred EEEEEEeCCCceeEEEeec-CCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc
Q 033457 8 VELKFRIYDGTDICHGTYA-SSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG 62 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~-~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G 62 (119)
+.||+++.++ ++.+.+. .+.|..+|+++| ....+.+ ....+|-|..
T Consensus 1 ~~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i-----~~~~~~~--~~~~~l~y~D 47 (81)
T cd05992 1 VRVKVKYGGE--IRRFVVVSRSISFEDLRSKI-----AEKFGLD--AVSFKLKYPD 47 (81)
T ss_pred CcEEEEecCC--CEEEEEecCCCCHHHHHHHH-----HHHhCCC--CCcEEEEeeC
Confidence 3577777765 5567888 999999999999 5555555 3566665543
No 91
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=76.27 E-value=3.7 Score=32.45 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=37.9
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCC--CCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKS--INDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~--~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
....+.+.|+++++..|.++ ...+-++ ....|+--.|+.|-|+.+|++|+.. ++.
T Consensus 16 ~~~~s~~~ti~d~~~~~~~~----~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~----s~~ 72 (297)
T KOG1639|consen 16 EKDLSGSETIDDLLKAISAK----NLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDG----SGA 72 (297)
T ss_pred eecCCCCCcHHHHHHHHHHh----hhccCccchhheeeccCCCccccchhHHHHhccC----CCC
Confidence 45667888999999777332 2223311 2344445579999999999999988 776
No 92
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=75.38 E-value=0.91 Score=36.48 Aligned_cols=40 Identities=33% Similarity=0.513 Sum_probs=0.0
Q ss_pred CccHHHHHHHcccccCCC----------ccCCCCCCCcEE-----EEEcceeeCCCCCcccC
Q 033457 28 STTVATLKQQLVAEWPQG----------KTITPKSINDVK-----LIHAGKILENDRTLADS 74 (119)
Q Consensus 28 ~~TV~~LK~~I~~~wp~~----------~~~~p~~~~~qr-----Li~~Gk~L~D~~tL~~~ 74 (119)
++||.++|..+ +. ..++| .+-++ |+|.-|.+.|.++|.+.
T Consensus 103 ttSv~dlk~~v-----~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e~ 157 (309)
T PF12754_consen 103 TTSVQDLKDAV-----QQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAEV 157 (309)
T ss_dssp --------------------------------------------------------------
T ss_pred cCcHHHHHHHH-----HhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHHH
Confidence 68999999999 55 67788 78888 99999999999999876
No 93
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=75.18 E-value=13 Score=24.59 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=40.1
Q ss_pred eEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEEEEccCcc
Q 033457 20 ICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVA 97 (119)
Q Consensus 20 ~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv~~~~~~ 97 (119)
+....++=...+..||..+ +...++. -+.-.+..+...|+.+++|-+-+++ ....+.+++-+++..+
T Consensus 4 vI~q~mDI~epl~~Lk~lL-----e~Rl~~~--L~~~~f~LQD~~L~~~k~L~dQcVq----geGlVQlnvQi~s~~~ 70 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLL-----ERRLGIS--LSDYEFWLQDIQLEPHKSLVDQCVQ----GEGLVQLNVQIKSNQG 70 (88)
T ss_dssp EEEEEEESSSBGGGHHHHS-----HHHH-S----SS-EEEETTEE--TTSBTTTSS--------SEEEEEEEEE--TT
T ss_pred eEEEEEecCCcHHHHHHHH-----HHhhCCC--cCCCeEEeccceecCCccHHHhhcc----ccCEEEEEEEEEecCC
Confidence 3455777788899999999 6666776 6666777788789999999999999 5553455554444433
No 94
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=75.11 E-value=9.1 Score=34.15 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=36.7
Q ss_pred eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCC
Q 033457 19 DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEND 68 (119)
Q Consensus 19 ~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~ 68 (119)
....+.++++.|+..+++.| ....++| ...|-|+|.|......
T Consensus 325 ~~~~~~~~~~ntl~~~~~~I-----~~~Tgip--e~~qeLL~e~~~~h~~ 367 (732)
T KOG4250|consen 325 TSHEYYVHADNTLHSLIERI-----SKQTGIP--EGKQELLFEGGLSHLE 367 (732)
T ss_pred eEEEEecChhhhHHHHHHHH-----HHhhCCC--CccceeeeecCccccC
Confidence 35578899999999999999 8889999 9999999998855433
No 95
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=73.72 E-value=13 Score=26.01 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=34.6
Q ss_pred eecC-CccHHHHHHHcccccCCCccCCCC----CCCcEEEEEcc-----------------eee---CCCCCcccCCccc
Q 033457 24 TYAS-STTVATLKQQLVAEWPQGKTITPK----SINDVKLIHAG-----------------KIL---ENDRTLADSRITV 78 (119)
Q Consensus 24 ~~~~-~~TV~~LK~~I~~~wp~~~~~~p~----~~~~qrLi~~G-----------------k~L---~D~~tL~~~~i~~ 78 (119)
.++. ++||.+|++.+..+=+.. .++++ ..+.+++++.. -+| +++.+|.++||.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~-~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~- 98 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTR-PGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVE- 98 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcC-CCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCC-
Confidence 4676 999999999885532111 12220 03566666532 356 677888888888
Q ss_pred cCCCCC
Q 033457 79 GDLPSG 84 (119)
Q Consensus 79 ~~~~~~ 84 (119)
+.+
T Consensus 99 ---nET 101 (122)
T PF10209_consen 99 ---NET 101 (122)
T ss_pred ---ccc
Confidence 665
No 96
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=73.30 E-value=12 Score=31.66 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=47.1
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCC----ccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQG----KTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~----~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
-++||...|+ +-+++.++++.+.|-.+|.+..-.+ ...+...++.|-.||+ +..+.|+.++|+. .|.
T Consensus 2 i~rfRsk~G~--~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s---~l~dqt~~dlGL~----hGq 72 (571)
T COG5100 2 IFRFRSKEGQ--RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFS---LLKDQTPDDLGLR----HGQ 72 (571)
T ss_pred eEEEecCCCc--eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeee---cccccChhhhccc----cCc
Confidence 4789999995 3579999999999999986643222 0011111233433433 3456899999999 888
Q ss_pred eeEEEEEE
Q 033457 85 VTTMHVVI 92 (119)
Q Consensus 85 ~~~vhlv~ 92 (119)
.+.|-.
T Consensus 73 --mLyl~y 78 (571)
T COG5100 73 --MLYLEY 78 (571)
T ss_pred --EEEEEe
Confidence 555544
No 97
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=73.25 E-value=8.2 Score=24.38 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=34.0
Q ss_pred EEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc
Q 033457 10 LKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG 62 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G 62 (119)
+++-++||... .+.+.|.+||.++=..+ -.+.++. ++.-.|.+.|
T Consensus 2 ~~V~LPng~~t-~V~vrpg~ti~d~L~~~-----c~kr~l~--~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRT-VVPVRPGMSVRDVLAKA-----CKKRGLN--PECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeE-EEEECCCCCHHHHHHHH-----HHHcCCC--HHHEEEEEec
Confidence 57889999754 78999999999999988 5566777 5555554443
No 98
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=72.99 E-value=18 Score=21.86 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=41.8
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEE
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHV 90 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhl 90 (119)
.+.+....||.+|.+.+..+.|... . ....++...|+...+ .-.+..+. +++ .|-+
T Consensus 15 ~~~~~~~~tv~~ll~~l~~~~p~~~---~--~~~~~v~vN~~~v~~--~~~~~~l~----~gD--~V~i 70 (77)
T PF02597_consen 15 EIEVPEGSTVRDLLEALAERYPELA---L--RDRVAVAVNGEIVPD--DGLDTPLK----DGD--EVAI 70 (77)
T ss_dssp EEEESSTSBHHHHHHHHCHHTGGGH---T--TTTEEEEETTEEEGG--GTTTSBEE----TTE--EEEE
T ss_pred EEecCCCCcHHHHHHHHHhhccccc---c--CccEEEEECCEEcCC--ccCCcCcC----CCC--EEEE
Confidence 5678889999999999977766544 3 588999999999987 24445566 777 4443
No 99
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=70.98 E-value=13 Score=24.40 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=36.6
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcc
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLA 72 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~ 72 (119)
|+||+-+.+ ++..+.++++.+-.+|.++| .+..++. ..++|-|.-. .|..||+
T Consensus 3 ikVKv~~~~--Dv~~i~v~~~i~f~dL~~kI-----rdkf~~~---~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 3 IRVKVHAQD--DTRYIMIGPDTGFADFEDKI-----RDKFGFK---RRLKIKMKDD--GDMITMG 55 (86)
T ss_pred EEEEEEecC--cEEEEEcCCCCCHHHHHHHH-----HHHhCCC---CceEEEEEcC--CCCcccc
Confidence 455555544 57789999999999999999 6666664 4666655544 3444443
No 100
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=68.52 E-value=16 Score=22.73 Aligned_cols=47 Identities=21% Similarity=0.042 Sum_probs=36.1
Q ss_pred EEEEEEeCCCc---eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE
Q 033457 8 VELKFRIYDGT---DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI 59 (119)
Q Consensus 8 i~ik~~~~~g~---~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi 59 (119)
-.|||-..++. ....+.+++++|+.+|-+.+ ..+.+++.++.+..|.
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~-----l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMA-----LEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHH-----HHHTTTSSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHH-----HHHhCCCCCCCCEEEE
Confidence 35777777764 15689999999999999999 5556666567888885
No 101
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=68.23 E-value=19 Score=22.45 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=35.3
Q ss_pred CceeEEEeecCC-ccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 17 GTDICHGTYASS-TTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 17 g~~~~~~~~~~~-~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
|.....++++.. .||.+|.+.|...-|+ .-.....+++...|+...+ +..++ +|+
T Consensus 14 g~~~~~~~~~~~~~tv~~L~~~L~~~~p~----l~~~~~~~~v~vn~~~v~~-----~~~l~----dgD 69 (80)
T TIGR01682 14 GTDEETLELPDESTTVGELKEHLAKEGPE----LAASRGQVMVAVNEEYVTD-----DALLN----EGD 69 (80)
T ss_pred CCCeEEEECCCCCcCHHHHHHHHHHhCch----hhhhccceEEEECCEEcCC-----CcCcC----CCC
Confidence 444345777766 8999999999555441 1111355778888888775 34556 666
No 102
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=67.79 E-value=26 Score=21.92 Aligned_cols=55 Identities=24% Similarity=0.164 Sum_probs=35.1
Q ss_pred EEEEeCC--CceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE------cceeeCCCC
Q 033457 10 LKFRIYD--GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH------AGKILENDR 69 (119)
Q Consensus 10 ik~~~~~--g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~------~Gk~L~D~~ 69 (119)
||+-..+ +...+.+.+++++|..+|-+.+ ..+.++..++....|+= ..|.|.|+.
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~-----l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e 64 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQL-----LKKFGLDDDPEDYALVEVLGDGGLERLLLPDE 64 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHH-----HHHhCCcCCcccEEEEEEECCceEEEEeCCCC
Confidence 4444444 2246789999999999999988 44455544466666652 335665443
No 103
>smart00455 RBD Raf-like Ras-binding domain.
Probab=67.59 E-value=14 Score=23.08 Aligned_cols=45 Identities=13% Similarity=-0.050 Sum_probs=36.4
Q ss_pred EEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc
Q 033457 10 LKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG 62 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G 62 (119)
.++-+++|+.+ .+.+.|..||.++=+.+ -.+.++. ++...|+..|
T Consensus 2 ~~v~LP~~~~~-~V~vrpg~tl~e~L~~~-----~~kr~l~--~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRT-VVKVRPGKTVRDALAKA-----LKKRGLN--PECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEE-EEEECCCCCHHHHHHHH-----HHHcCCC--HHHEEEEEcC
Confidence 57789999754 78999999999999999 5556677 7888887765
No 104
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=66.81 E-value=17 Score=21.77 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=28.5
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEN 67 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D 67 (119)
+++++...||.+|.+.+ . ++ ...+.+...|+++..
T Consensus 8 ~~~~~~~~tv~~ll~~l-----~----~~--~~~i~V~vNg~~v~~ 42 (65)
T cd00565 8 PREVEEGATLAELLEEL-----G----LD--PRGVAVALNGEIVPR 42 (65)
T ss_pred EEEcCCCCCHHHHHHHc-----C----CC--CCcEEEEECCEEcCH
Confidence 57888889999999888 2 45 678889999998854
No 105
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=64.26 E-value=30 Score=21.67 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=14.8
Q ss_pred EeecC-CccHHHHHHHcccccC
Q 033457 23 GTYAS-STTVATLKQQLVAEWP 43 (119)
Q Consensus 23 ~~~~~-~~TV~~LK~~I~~~wp 43 (119)
++++. ..||.+|++.|..+-|
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~ 40 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGD 40 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCc
Confidence 45543 4799999999966543
No 106
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=63.51 E-value=17 Score=23.20 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=35.6
Q ss_pred EEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce
Q 033457 11 KFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK 63 (119)
Q Consensus 11 k~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk 63 (119)
++.|+||+.+ .+.+.|..||.++=.++ -+..++. ++..-++..|+
T Consensus 3 rV~LPdg~~T-~V~vrpG~ti~d~L~kl-----lekRgl~--~~~~~vf~~g~ 47 (73)
T cd01817 3 RVILPDGSTT-VVPTRPGESIRDLLSGL-----CEKRGIN--YAAVDLFLVGG 47 (73)
T ss_pred EEECCCCCeE-EEEecCCCCHHHHHHHH-----HHHcCCC--hhHEEEEEecC
Confidence 5679999754 78999999999998888 5566777 77777777664
No 107
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=63.37 E-value=4.7 Score=32.51 Aligned_cols=43 Identities=33% Similarity=0.454 Sum_probs=36.6
Q ss_pred EEeec-CCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCc
Q 033457 22 HGTYA-SSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTL 71 (119)
Q Consensus 22 ~~~~~-~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL 71 (119)
.+.+. .+..|..||.++ .+...++ +..|+++|-|.+|.|+..+
T Consensus 296 ~~~~~~~~~~~~~~k~k~-----~~~~~i~--~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 296 KITVQSLSENVASLKEKI-----ADESQIP--ANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred eecccccccccccccccc-----ccccccc--hhheeeccCCcccCccccc
Confidence 44554 677899999999 9999999 9999999999999998544
No 108
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=62.78 E-value=6.3 Score=32.31 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=48.4
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc---eeeC--CCCCcccCCcc
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG---KILE--NDRTLADSRIT 77 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G---k~L~--D~~tL~~~~i~ 77 (119)
..+|.+|++||++. -..+-++++|..|-.-..++ ..+.+ ....+|+++= |.|. -+.|+.++||.
T Consensus 277 vt~i~vR~pdG~R~-qrkf~~sepv~ll~~~~~s~----~dg~~--k~~FkLv~a~P~~k~l~~~~daT~~eaGL~ 345 (356)
T KOG1364|consen 277 VTSIQVRFPDGRRK-QRKFLKSEPVQLLWSFCYSH----MDGSD--KKRFKLVQAIPASKTLDYGADATFKEAGLA 345 (356)
T ss_pred eeEEEEecCCccHH-HHhhccccHHHHHHHHHHHh----hcccc--cccceeeecccchhhhhccccchHHHhccC
Confidence 45699999999764 45778889998887766443 33455 6888999887 6664 56789999998
No 109
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=61.23 E-value=37 Score=21.06 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=35.1
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCc
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTL 71 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL 71 (119)
.+++-|++|+.+ .+.+.+..||.++=..+ -..-++.++.-.+++.-..+.|.-+...
T Consensus 2 ~~~v~LP~~q~t-~V~vrpg~ti~d~L~~~-----~~kr~L~~~~~~V~~~~~~k~l~~~~d~ 58 (71)
T PF02196_consen 2 TCRVHLPNGQRT-VVQVRPGMTIRDALSKA-----CKKRGLNPECCDVRLVGEKKPLDWDQDS 58 (71)
T ss_dssp EEEEEETTTEEE-EEEE-TTSBHHHHHHHH-----HHTTT--CCCEEEEEEEEEEEE-TTSBG
T ss_pred eEEEECCCCCEE-EEEEcCCCCHHHHHHHH-----HHHcCCCHHHEEEEEcCCCccccCCCce
Confidence 368899999754 78999999999998888 4445566223334433355566544333
No 110
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=61.09 E-value=12 Score=25.20 Aligned_cols=18 Identities=39% Similarity=0.542 Sum_probs=16.7
Q ss_pred EEEEcceeeCCCCCcccC
Q 033457 57 KLIHAGKILENDRTLADS 74 (119)
Q Consensus 57 rLi~~Gk~L~D~~tL~~~ 74 (119)
.|-|+||.|.++.+|++|
T Consensus 3 ~LW~aGK~l~~~k~l~dy 20 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY 20 (98)
T ss_pred eEEeccccccCCCcHHHh
Confidence 478999999999999999
No 111
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=59.09 E-value=37 Score=22.38 Aligned_cols=53 Identities=11% Similarity=0.251 Sum_probs=32.5
Q ss_pred eEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE--c--ce-eeCCC-CCcccCCccccCCCCC
Q 033457 20 ICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH--A--GK-ILEND-RTLADSRITVGDLPSG 84 (119)
Q Consensus 20 ~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~--~--Gk-~L~D~-~tL~~~~i~~~~~~~~ 84 (119)
..+-.|+..+||..+.+.+ .....++ .+.||-- + +. .|.+. .||.++++. +|.
T Consensus 15 ~~t~~FSk~DTI~~v~~~~-----rklf~i~---~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~----~gQ 73 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEM-----RKLFNIQ---EETRLWNKYSENSYELLNNPEITVEDAGLY----DGQ 73 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHH-----HHHCT-T---S-EEEEEECTTTCEEEE--TTSBTTTTT------TTE
T ss_pred HhHhhccccChHHHHHHHH-----HHHhCCC---ccceehhccCCcchhhhCCCCccHHHccCc----CCC
Confidence 4567899999999999988 5555564 4455533 2 22 46444 689999999 777
No 112
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=58.27 E-value=45 Score=22.44 Aligned_cols=48 Identities=25% Similarity=0.146 Sum_probs=33.8
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG 62 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G 62 (119)
-||+--.||+ ..+++...++||.+|-..+ +.+..++.+.+.+-+++.|
T Consensus 4 ~IRIFr~D~T-f~Tls~~l~tTv~eli~~L-----~rK~~l~~~~ny~l~l~~~ 51 (97)
T cd01775 4 CIRVFRSDGT-FTTLSCPLNTTVSELIPQL-----AKKFYLPSGGNYQLSLKKH 51 (97)
T ss_pred EEEEEecCCc-EEEEEcCCcCcHHHHHHHH-----HHhhcCCCCCCeEEEEEEC
Confidence 4777777875 4578999999999999999 5556665433444444444
No 113
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=58.20 E-value=19 Score=23.43 Aligned_cols=36 Identities=17% Similarity=0.020 Sum_probs=26.3
Q ss_pred EEEEEEeCCCceeEEEeecC--CccHHHHHHHcccccCCCccCCC
Q 033457 8 VELKFRIYDGTDICHGTYAS--STTVATLKQQLVAEWPQGKTITP 50 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~--~~TV~~LK~~I~~~wp~~~~~~p 50 (119)
|+||+.+.+ ++.-|.+++ ++|-.+|++.| +...+++
T Consensus 1 V~vKaty~~--d~~rf~~~~~~~~~~~~L~~ev-----~~rf~l~ 38 (81)
T cd06396 1 VNLKVTYNG--ESQSFLVSDSENTTWASVEAMV-----KVSFGLN 38 (81)
T ss_pred CEEEEEECC--eEEEEEecCCCCCCHHHHHHHH-----HHHhCCC
Confidence 355665555 455688988 88999999999 6666665
No 114
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=57.19 E-value=24 Score=23.49 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=29.8
Q ss_pred EEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE
Q 033457 12 FRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH 60 (119)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~ 60 (119)
++..+| +++.+.|+.+.|-.+|++++ .+..+++ .. +.|-|
T Consensus 17 l~Y~GG-~tr~i~V~r~~s~~el~~kl-----~~~~~~~--~~-~~lky 56 (97)
T cd06410 17 LRYVGG-ETRIVSVDRSISFKELVSKL-----SELFGAG--VV-VTLKY 56 (97)
T ss_pred EEEcCC-ceEEEEEcCCCCHHHHHHHH-----HHHhCCC--Cc-eEEEE
Confidence 455667 46789999999999999999 6666665 33 55544
No 115
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=56.21 E-value=18 Score=23.87 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=31.2
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCC
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITP 50 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p 50 (119)
.+.|++-++||..+ .+++..+++..++=+.+ ....++|
T Consensus 1 ~V~L~V~Lpdg~~i-~V~v~~s~~a~~Vleav-----~~kl~L~ 38 (87)
T cd01777 1 DVELRIALPDKATV-TVRVRKNATTDQVYQAL-----VAKAGMD 38 (87)
T ss_pred CeEEEEEccCCCEE-EEEEEEcccHHHHHHHH-----HHHhCCC
Confidence 36899999999765 78999999999999999 5555565
No 116
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.96 E-value=41 Score=27.80 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=44.8
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEc---ceee-----CCCCCcccCCccccC
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA---GKIL-----ENDRTLADSRITVGD 80 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~---Gk~L-----~D~~tL~~~~i~~~~ 80 (119)
++++.+++-+..-..-|+-.-||.+++..+ ...-|+. ...+||+|- ||-- .-+.+|-.|+|+
T Consensus 338 rvk~l~~~~~v~~s~~I~~~~TV~D~~~~L-----d~~VGvk--~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIe--- 407 (418)
T KOG2982|consen 338 RVKALNSGPKVIASGLICMTRTVLDFMKIL-----DPKVGVK--FTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIE--- 407 (418)
T ss_pred eeeeeccCCccccceEEEeehHHHHHHHHh-----ccccccc--cceeEEEEEcccCccCCccccCCCCcceEEecc---
Confidence 456665554333344567778999999999 7778888 899999883 3321 112345566777
Q ss_pred CCCCeeEE
Q 033457 81 LPSGVTTM 88 (119)
Q Consensus 81 ~~~~~~~v 88 (119)
+|+.+.|
T Consensus 408 -dGDs~lv 414 (418)
T KOG2982|consen 408 -DGDSFLV 414 (418)
T ss_pred -CCCEeee
Confidence 7774433
No 117
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=54.86 E-value=56 Score=21.11 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=37.1
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
+.+++.+ +|+ +.+++...||.+|=+.+ +++ ...+-+-..|.++. ...-++.-++ +|+
T Consensus 17 ~~m~I~V-NG~---~~~~~~~~tl~~LL~~l---------~~~--~~~vAVevNg~iVp-r~~w~~t~L~----egD 73 (84)
T PRK06083 17 VLITISI-NDQ---SIQVDISSSLAQIIAQL---------SLP--ELGCVFAINNQVVP-RSEWQSTVLS----SGD 73 (84)
T ss_pred ceEEEEE-CCe---EEEcCCCCcHHHHHHHc---------CCC--CceEEEEECCEEeC-HHHcCcccCC----CCC
Confidence 3444433 553 56888888999887765 355 67777788999884 2234455566 666
No 118
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=53.62 E-value=36 Score=22.45 Aligned_cols=40 Identities=13% Similarity=-0.076 Sum_probs=30.4
Q ss_pred CCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE
Q 033457 15 YDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH 60 (119)
Q Consensus 15 ~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~ 60 (119)
.+|-...++.+.|.+|+.+|=+.+ +++..+. .+++..|++
T Consensus 10 ~sgct~KTL~V~P~~tt~~vc~lc-----A~Kf~V~-qPe~y~LFl 49 (87)
T cd01776 10 NSGCTGKTLLVRPYITTEDVCQLC-----AEKFKVT-QPEEYSLFL 49 (87)
T ss_pred CCCceeeeeecCCCCcHHHHHHHH-----HHHhccC-ChhheeEEE
Confidence 345556689999999999999999 7776654 467777754
No 119
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=53.27 E-value=46 Score=19.73 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=26.2
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE 66 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~ 66 (119)
++++....||.+|-+.+ +++ ....-+.+.|.++.
T Consensus 9 ~~~~~~~~tl~~lL~~l---------~~~--~~~vav~vNg~iv~ 42 (66)
T PRK05659 9 PRELPDGESVAALLARE---------GLA--GRRVAVEVNGEIVP 42 (66)
T ss_pred EEEcCCCCCHHHHHHhc---------CCC--CCeEEEEECCeEeC
Confidence 56888888999887765 455 67777888998886
No 120
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=52.25 E-value=38 Score=22.22 Aligned_cols=31 Identities=23% Similarity=0.086 Sum_probs=26.8
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcc
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLV 39 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~ 39 (119)
.-|||-+.||+. ..+.|+..+|++++=+.++
T Consensus 3 ~vvkv~~~Dg~s-K~l~V~~~~Ta~dV~~~L~ 33 (85)
T cd01787 3 QVVKVYSEDGAS-KSLEVDERMTARDVCQLLV 33 (85)
T ss_pred eEEEEEecCCCe-eEEEEcCCCcHHHHHHHHH
Confidence 468899999964 5899999999999999983
No 121
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.58 E-value=8.6 Score=32.85 Aligned_cols=66 Identities=23% Similarity=0.171 Sum_probs=49.9
Q ss_pred ceeEEEEEEeCCCcee-EEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCcc
Q 033457 5 EECVELKFRIYDGTDI-CHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRIT 77 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~-~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~ 77 (119)
=.++.|+..+..+.+. ..+..+-..|-.+|...| +.+.+++ -+.++.|-+||+|.-.+||.+-++.
T Consensus 35 lat~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~i-----akklgi~--enhvKci~~~Kils~~ktlaeQglk 101 (568)
T KOG2561|consen 35 LATESVRLVFAGKGDRMNLKKCSLHITGSELQALI-----AKKLGIK--ENHVKCIINGKILSCRKTLAEQGLK 101 (568)
T ss_pred ccceeeEeccccccchhhhhhcccccccHHHHHHH-----HHHcCCc--hhhhheeeccceeecccchhhhhhh
Confidence 3456666666654322 234455666778899999 8888999 6699999999999999999988877
No 122
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=50.14 E-value=39 Score=24.57 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=29.3
Q ss_pred EEeecC-CccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccC
Q 033457 22 HGTYAS-STTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADS 74 (119)
Q Consensus 22 ~~~~~~-~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~ 74 (119)
.+++.. .+.+..+++.- ++...++ .+ |+-|+++....|+++|
T Consensus 78 ~lele~~~~~ie~I~~iC-----ee~lpf~--y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 78 ILELEDEEDVIEKIREIC-----EEVLPFG--YD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEecCcHHHHHHHHHHH-----HHhCCCc--eE----eeeeEEeccCCchhhh
Confidence 467766 67777887666 4433343 22 3579999999999998
No 123
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=50.09 E-value=17 Score=23.34 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.8
Q ss_pred EEeecCCccHHHHHHHcccc
Q 033457 22 HGTYASSTTVATLKQQLVAE 41 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~ 41 (119)
++.++.+.|+.++|+.+|.+
T Consensus 3 ~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 3 PLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEETT-BHHHHHHHHHHH
T ss_pred EEEccCcCcHHHHHHHHHHH
Confidence 57889999999999999765
No 124
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=48.35 E-value=52 Score=25.55 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=41.0
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCC
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEND 68 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~ 68 (119)
+++.|+|.|+.+||+ ...+.+|-..-|.-+|..|..| +..+. ...|-|-|.-++-+++
T Consensus 24 ~~d~itlef~~~DGt-lit~~~Df~~~v~i~kalilge---~e~gq---s~yq~~cf~~~~~~~~ 81 (240)
T PF14941_consen 24 EEDTITLEFQRSDGT-LITQLADFKQEVQIFKALILGE---EERGQ---SQYQALCFVTKLQKND 81 (240)
T ss_pred CCceEEEEEEcCCCc-EEeeehhhhhHHHHHHHHHcCh---hhhcc---CcceeEEEEEeeccCC
Confidence 488999999999996 4567788888899999999553 22232 3566676666654443
No 125
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=53 Score=22.75 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=37.9
Q ss_pred eeEEEEEEeCCCcee---EEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceee
Q 033457 6 ECVELKFRIYDGTDI---CHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKIL 65 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~---~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L 65 (119)
..|.|+||-.++.-+ ..+.+++++|++.+-..| ....+++ ..++-++|-..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Fl-----kk~Lkl~--as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFL-----KKFLKLQ--ASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHH-----HHHhCCc--ccCeEEEEEcCcc
Confidence 468888887775211 136899999999988888 5555677 7777777866544
No 126
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=44.82 E-value=40 Score=28.71 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=40.9
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCC---CCCcccCCccccCCC
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEN---DRTLADSRITVGDLP 82 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D---~~tL~~~~i~~~~~~ 82 (119)
..++|.|||+||... .-.|+.+.-...+++-+. +-+.-..+ .-++---|--|...| +++|.++++- |
T Consensus 313 d~~rLqiRLPdGssf-te~Fps~~vL~~vr~yvr-q~~~i~~g----~f~LatpyPRReft~eDy~KtllEl~L~----p 382 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSF-TEKFPSTSVLRMVRDYVR-QNQTIGLG----AFDLATPYPRREFTDEDYDKTLLELRLF----P 382 (506)
T ss_pred ceeEEEEecCCccch-hhcCCcchHHHHHHHHHH-hccccccc----ceeeccccccccccchhhhhhHHHhccC----C
Confidence 578999999999754 557766666666776662 22221111 122222344554432 3778888888 7
Q ss_pred CC
Q 033457 83 SG 84 (119)
Q Consensus 83 ~~ 84 (119)
..
T Consensus 383 sa 384 (506)
T KOG2507|consen 383 SA 384 (506)
T ss_pred cc
Confidence 65
No 127
>PRK07440 hypothetical protein; Provisional
Probab=44.69 E-value=74 Score=19.58 Aligned_cols=34 Identities=32% Similarity=0.234 Sum_probs=26.7
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE 66 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~ 66 (119)
+.++....||.+|-+.+ +++ +..+-+-+.|.++.
T Consensus 13 ~~~~~~~~tl~~lL~~l---------~~~--~~~vav~~N~~iv~ 46 (70)
T PRK07440 13 TRTCSSGTSLPDLLQQL---------GFN--PRLVAVEYNGEILH 46 (70)
T ss_pred EEEcCCCCCHHHHHHHc---------CCC--CCeEEEEECCEEeC
Confidence 46888889999987766 345 67888889999885
No 128
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=44.58 E-value=71 Score=20.03 Aligned_cols=52 Identities=25% Similarity=0.266 Sum_probs=32.4
Q ss_pred EEEEeCC---CceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--E-cc--eeeCC
Q 033457 10 LKFRIYD---GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--H-AG--KILEN 67 (119)
Q Consensus 10 ik~~~~~---g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~-~G--k~L~D 67 (119)
||+-..+ + ....+.+++++|+.+|=+.+ ..+.++...+....|+ + .| +.|.|
T Consensus 5 lrV~~~~~~~~-~~kti~v~~~tTa~~Vi~~~-----l~k~~l~~~~~~y~L~e~~~~~~er~L~~ 64 (90)
T smart00314 5 LRVYVDDLPGG-TYKTLRVSSRTTARDVIQQL-----LEKFHLTDDPEEYVLVEVLPDGKERVLPD 64 (90)
T ss_pred EEEecccCCCC-cEEEEEECCCCCHHHHHHHH-----HHHhCCCCCcccEEEEEEeCCcEEEEeCC
Confidence 4444444 5 35689999999999999888 4455554334444444 1 34 56654
No 129
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=42.87 E-value=1e+02 Score=20.68 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=31.7
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI 59 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi 59 (119)
....|.++-+. +..+.|+.++|+.++-+.+.. +..+..++...-|+
T Consensus 7 ~~~sf~lp~~s-~k~v~IsS~tTt~eVI~~LL~-----KF~v~~nP~kFALY 52 (96)
T cd01778 7 TSTSLPLPKDT-AKHLHISSKTTVREVIEALLK-----KFLVVDNPRKFALF 52 (96)
T ss_pred EEEEEeccCCc-eeEEEEecCCcHHHHHHHHHH-----hheeccCCcceEEE
Confidence 45567777765 456899999999999998844 34444445555554
No 130
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=41.53 E-value=61 Score=23.51 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=29.3
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADS 74 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~ 74 (119)
.+++.....+..+++.- .+...++ .+ +.-|+++.+..|+++|
T Consensus 77 ~le~~~~~~i~~I~eiC-----~e~~pF~--y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 77 ILELEDEDIVEEIEEIC-----KEMLPFG--YE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEecCHHHHHHHHHHH-----HhhCCCc--eE----eeeeeEeecCCchhhh
Confidence 45666777788888766 3333343 22 4679999999999998
No 131
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=41.45 E-value=94 Score=20.33 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=30.2
Q ss_pred EEEEeCCCceeEEEeec-----CCccHHHHHHHcccccCCCccCCCCCC-CcEEEEEcc
Q 033457 10 LKFRIYDGTDICHGTYA-----SSTTVATLKQQLVAEWPQGKTITPKSI-NDVKLIHAG 62 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~-----~~~TV~~LK~~I~~~wp~~~~~~p~~~-~~qrLi~~G 62 (119)
||+.+.+ +.+-|.++ ++.+...|+++| ++...++ + ....|-|.-
T Consensus 3 vKv~y~~--~~rRf~l~~~~~~~d~~~~~L~~kI-----~~~f~l~--~~~~~~l~Y~D 52 (91)
T cd06398 3 VKVKYGG--TLRRFTFPVAENQLDLNMDGLREKV-----EELFSLS--PDADLSLTYTD 52 (91)
T ss_pred EEEEeCC--EEEEEEeccccccCCCCHHHHHHHH-----HHHhCCC--CCCcEEEEEEC
Confidence 4444433 45556666 478999999999 7777776 4 677777743
No 132
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=41.36 E-value=28 Score=22.03 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=29.0
Q ss_pred cCCCCCCCcEEEE-EcceeeCCCCCcccCCccccCCCCCeeEEEEEEcc
Q 033457 47 TITPKSINDVKLI-HAGKILENDRTLADSRITVGDLPSGVTTMHVVIQP 94 (119)
Q Consensus 47 ~~~p~~~~~qrLi-~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv~~~ 94 (119)
.+.| ++...|- -+|.+|+-++.+++|++. ++. ++.|.++.
T Consensus 32 vgQP--~ENWElkDe~G~vlD~~kKveD~Gft----ngv--kLFLsLKA 72 (76)
T PF10790_consen 32 VGQP--PENWELKDESGQVLDVNKKVEDFGFT----NGV--KLFLSLKA 72 (76)
T ss_pred cCCC--cccceeeccCCcEeeccchhhhcccc----ccc--eEEEEeec
Confidence 4556 5544443 378899989999999999 777 77776653
No 133
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=40.05 E-value=17 Score=23.71 Aligned_cols=12 Identities=17% Similarity=0.764 Sum_probs=10.2
Q ss_pred ccCCCceEEeeC
Q 033457 108 MQKQNSCACIIL 119 (119)
Q Consensus 108 ~~~~~~c~C~i~ 119 (119)
.+.+++|+|+++
T Consensus 101 pp~h~nCRC~~i 112 (112)
T PF04233_consen 101 PPEHPNCRCTVI 112 (112)
T ss_pred CCCCCCCeeeeC
Confidence 577899999986
No 134
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=39.88 E-value=47 Score=27.92 Aligned_cols=54 Identities=19% Similarity=0.423 Sum_probs=38.8
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCcc
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRIT 77 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~ 77 (119)
-.+.+++.+.++.....+.+..+++| .+.+.||. |+ |.|.+|.+++++++-|..
T Consensus 197 ~~f~~~l~l~Gs~~l~~~P~g~~t~v-----~l~S~W~~--------PS-----F~G~fLP~~r~i~~~GF~ 250 (430)
T PF06123_consen 197 LPFSFSLQLNGSESLSFVPLGKTTEV-----TLKSDWPH--------PS-----FTGAFLPEEREITDSGFS 250 (430)
T ss_pred ceEEEEEEecCcCcEEEEecCcccEE-----EEEcCCcC--------CC-----CCCccCCCCCccCCCCce
Confidence 35777777777655555556566554 56788872 45 999999999999887766
No 135
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=39.66 E-value=77 Score=20.45 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=28.7
Q ss_pred EEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc
Q 033457 21 CHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG 62 (119)
Q Consensus 21 ~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G 62 (119)
..+.+.+..+..+|...| .++...+ ++..+|-|.-
T Consensus 9 Vai~v~~g~~y~~L~~~l-----s~kL~l~--~~~~~LSY~~ 43 (78)
T cd06411 9 VALRAPRGADVSSLRALL-----SQALPQQ--AQRGQLSYRA 43 (78)
T ss_pred EEEEccCCCCHHHHHHHH-----HHHhcCC--hhhcEEEecC
Confidence 356788999999999999 6666777 8888998864
No 136
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=39.16 E-value=37 Score=18.67 Aligned_cols=14 Identities=7% Similarity=0.332 Sum_probs=12.2
Q ss_pred CCCcEEEEEcceee
Q 033457 52 SINDVKLIHAGKIL 65 (119)
Q Consensus 52 ~~~~qrLi~~Gk~L 65 (119)
...++-++|+|++.
T Consensus 4 ~~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 4 ETAQLTIFYGGQVC 17 (36)
T ss_pred CCCcEEEEECCEEE
Confidence 36899999999977
No 137
>PF00894 Luteo_coat: Luteovirus coat protein; InterPro: IPR001517 Barley yellow dwarf virus (BYDV) can be separated into two groups based on serological relationships, presumably governed by the viral capsid structure []. Coding regions of coat proteins have been identified for the MAV-PS1, P-PAV (group 1) and NY-RPV (group 2) isolates of BYDV. Group 1 proteins show 71% sequence similarity to each other, 51% similarity to those of group 2, and a high degree of similarity to those from other luteoviruses (including coat proteins from Beet western yellows virus (BWYV) [] and Potato leafroll virus (PLrV) [, ]). Among luteovirus coat protein sequences in general, several highly conserved domains can be identified, while other domains differentiate group 1 isolates from group 2 and other luteoviruses. Sequence comparisons between the genomes of PLrV, BWYV and BYDV have revealed ~65% protein sequence similarity between the capsid proteins of BWYV and PLrV and ~45% similarity between BYDV and PLrV []. The N-terminal regions of these sequences, like those of many plant virus capsid proteins, is highly basic. These regions may be involved in protein-RNA interaction.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=38.68 E-value=1.1e+02 Score=21.84 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=35.7
Q ss_pred eEEEEEEeC-----CCceeEEEeecCCccHHHHHHHccc---------ccCCCcc----CCCCCCCcEEEEEcce
Q 033457 7 CVELKFRIY-----DGTDICHGTYASSTTVATLKQQLVA---------EWPQGKT----ITPKSINDVKLIHAGK 63 (119)
Q Consensus 7 ~i~ik~~~~-----~g~~~~~~~~~~~~TV~~LK~~I~~---------~wp~~~~----~~p~~~~~qrLi~~Gk 63 (119)
.|.|.|+.- .| ...+++|+..+...|.-.|.. .||+... -.+.+.+|.||+|.|.
T Consensus 45 ~v~v~f~SeAsstt~G--sIayElD~~ck~s~l~S~in~f~I~k~g~ksf~a~~InG~~w~~ss~dQF~iLYKgN 117 (138)
T PF00894_consen 45 NVKVEFISEASSTTSG--SIAYELDPHCKQSTLGSYINKFSITKNGSKSFPAKQINGKEWHDSSEDQFRILYKGN 117 (138)
T ss_pred EEEEEEEeecccCCCc--cEEEEecCccchhhhhheeeeEeeecccccccchhccCCccccccCcceEEEEEecC
Confidence 355666632 34 246899999988888777632 3554432 1344479999999996
No 138
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=36.88 E-value=26 Score=22.64 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.3
Q ss_pred EEeecCCccHHHHHHHcccc
Q 033457 22 HGTYASSTTVATLKQQLVAE 41 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~ 41 (119)
.+.++.+.|+.++|+.+|.+
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQ 22 (78)
T ss_pred eEEccccccHHHHHHHHHHH
Confidence 46888999999999999764
No 139
>PRK11715 inner membrane protein; Provisional
Probab=36.08 E-value=55 Score=27.58 Aligned_cols=53 Identities=17% Similarity=0.393 Sum_probs=38.4
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCcc
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRIT 77 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~ 77 (119)
.+.+++.+.++.....+.+..+++| .|.++||. |+ |.|.+|.+++++++-|..
T Consensus 205 ~f~~~l~L~Gs~~l~~~P~G~~t~v-----~l~S~Wph--------PS-----F~G~fLP~~R~It~~GF~ 257 (436)
T PRK11715 205 DFDFALNLRGTGSLSVVPLGRNTEV-----TLTSNWPH--------PS-----FVGDFLPAEREISESGFQ 257 (436)
T ss_pred eEEEEEEecCccceEEEecCcccee-----EEEcCCcC--------CC-----CCCccCCCCCeeCCCCee
Confidence 4677777777665655566666654 57788883 45 899999999999887665
No 140
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.99 E-value=54 Score=26.20 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=28.7
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHc
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQL 38 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I 38 (119)
-+..+|.||++||+. +...|.+..+...|+.-|
T Consensus 208 ys~crlQiRl~DG~T-l~~tF~a~E~L~~VR~wV 240 (290)
T KOG2689|consen 208 YSQCRLQIRLPDGQT-LTQTFNARETLAAVRLWV 240 (290)
T ss_pred ccceEEEEEcCCCCe-eeeecCchhhHHHHHHHH
Confidence 367899999999974 567999999999999888
No 141
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=34.47 E-value=64 Score=22.27 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=22.3
Q ss_pred eeEEEEEEeCCCceeEEEeecC--CccHHHHHHHc
Q 033457 6 ECVELKFRIYDGTDICHGTYAS--STTVATLKQQL 38 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~--~~TV~~LK~~I 38 (119)
-+++|++++-+|. |..+++. ..+|..++..|
T Consensus 2 ~~MRiri~fEsg~--c~~eL~ee~pE~vr~i~d~l 34 (126)
T COG2164 2 RTMRIRITFESGH--CTGELDEENPESVRRIYDSL 34 (126)
T ss_pred ceEEEEEEEecce--EEEEccccChHHHHHHHHhC
Confidence 4688999999985 4555543 35788888776
No 142
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=32.92 E-value=1.1e+02 Score=25.11 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=29.2
Q ss_pred EEEEEeCCCceeEEEeec-CCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce
Q 033457 9 ELKFRIYDGTDICHGTYA-SSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK 63 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~-~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk 63 (119)
.|.+||.+.++..-+.|+ ...+|-+||+.|..+ .+.+-- .+-+-|||.|.
T Consensus 4 vI~YrFkSqkn~SRI~FdGTGl~vfdlKrEII~q---~Klg~g--~DFdLl~yn~~ 54 (427)
T COG5222 4 VINYRFKSQKNFSRISFDGTGLPVFDLKREIINQ---RKLGSG--KDFDLLFYNGE 54 (427)
T ss_pred eeEEEeeccCCcceeEeccCCccHHHHHHHHHHh---hhccCC--ccceEEEecCC
Confidence 355555555444445665 457899999999653 222211 34455667764
No 143
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=32.34 E-value=1e+02 Score=18.25 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.8
Q ss_pred EEEEeCCCceeEEEeecCCccHHHHHHHc
Q 033457 10 LKFRIYDGTDICHGTYASSTTVATLKQQL 38 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~~~~TV~~LK~~I 38 (119)
|++.+++|+ ..+++...|+.++-+.|
T Consensus 1 I~v~lpdG~---~~~~~~g~T~~d~A~~I 26 (60)
T PF02824_consen 1 IRVYLPDGS---IKELPEGSTVLDVAYSI 26 (60)
T ss_dssp EEEEETTSC---EEEEETTBBHHHHHHHH
T ss_pred CEEECCCCC---eeeCCCCCCHHHHHHHH
Confidence 567789995 45799999999999999
No 144
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=31.37 E-value=93 Score=23.82 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=33.4
Q ss_pred eeEEEEEEeCC--CceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE
Q 033457 6 ECVELKFRIYD--GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH 60 (119)
Q Consensus 6 ~~i~ik~~~~~--g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~ 60 (119)
+.+.|+|+-.. ......+.++..+|-.+|-+.| ++..+.+ +..+||.-
T Consensus 175 nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~V-----a~~l~~d--P~~lr~~~ 224 (249)
T PF12436_consen 175 NRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKV-----AEHLNVD--PEHLRFFT 224 (249)
T ss_dssp HEEEEEEEETTSTT---EEEEEETT--HHHHHHHH-----HHHHTS---GGGEEEE-
T ss_pred CeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH-----HHHHCCC--hHHEEEEE
Confidence 46788888743 2234578899999999999999 8888887 99999853
No 145
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=31.13 E-value=47 Score=23.92 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=26.3
Q ss_pred EEEcce-eeCCCCCcccCCccccCCCCCeeEEEEEEccCcccc
Q 033457 58 LIHAGK-ILENDRTLADSRITVGDLPSGVTTMHVVIQPLVAKK 99 (119)
Q Consensus 58 Li~~Gk-~L~D~~tL~~~~i~~~~~~~~~~~vhlv~~~~~~~~ 99 (119)
-.+.|+ ..+|+++|++++++ =|+ .+.+.+.++.-..
T Consensus 106 ~t~~g~Kg~ddnktL~~~kf~----iGD--~lDVaI~~p~~~~ 142 (151)
T KOG3391|consen 106 TTCLGRKGIDDNKTLQQTKFE----IGD--YLDVAITPPNRRP 142 (151)
T ss_pred ccccCcccCCccchhhhCCcc----ccc--eEEEEecCcccCC
Confidence 334565 44899999999999 667 7777777776543
No 146
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=30.55 E-value=2.2e+02 Score=21.24 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=26.9
Q ss_pred EEEeecCCccHHHHHHHcccccCCCccCCCCC-CCcEEE--EEccee---eCCCCCcccC
Q 033457 21 CHGTYASSTTVATLKQQLVAEWPQGKTITPKS-INDVKL--IHAGKI---LENDRTLADS 74 (119)
Q Consensus 21 ~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~-~~~qrL--i~~Gk~---L~D~~tL~~~ 74 (119)
..+-++.+.||.+|-+.+ +...++++. ...+|| ++.||+ +..+.+|++.
T Consensus 36 ~~~~vpk~~tV~Dll~~l-----~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEEL-----QKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEE--BTT-BHHHHHHHH-----HTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEECCCCCHHHHHHHH-----HHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 346678999999999999 665555522 356665 356664 5677777665
No 147
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=30.05 E-value=1.5e+02 Score=21.71 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=34.0
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCc-cHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccC
Q 033457 5 EECVELKFRIYDGTDICHGTYASST-TVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADS 74 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~-TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~ 74 (119)
++.+.+++. -|. ..++++..+ ++..+++.. .+...+. .. ++-|+++.+..|+.+|
T Consensus 73 g~~~eL~Vk--vGr--i~~eie~e~~~~e~ie~ic-----~e~lPf~-----y~-v~vG~F~r~kpTVTDy 128 (165)
T COG4055 73 GEEIELKVK--VGR--IILEIEDEDETMEKIEEIC-----DEMLPFG-----YE-VRVGKFTRRKPTVTDY 128 (165)
T ss_pred CEEEEEEEE--eeE--EEEEecCcHhHHHHHHHHH-----HHhCCCc-----ee-eeeeeeeccCCcchhh
Confidence 344555443 342 356787765 788887655 2222222 22 4779999999999998
No 148
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=29.78 E-value=3.3e+02 Score=22.86 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=51.0
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE-cceeeCCCCCcccCCccccCCCCCee
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH-AGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~-~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
++|++.-.+. ...+.++.+..|.+|--.|.+---++..+ +.......|-- .|..|+-+.+|.+.+|. ||+
T Consensus 3 ~RVtV~~~~~--~~DlaLPa~~PvaellP~ll~~~~~~~~~-~~~~~~w~L~r~gG~pL~~~~sL~~~gV~----DG~-- 73 (452)
T TIGR02958 3 CRVTVLAGRR--AVDVALPADVPVAELIPDLVDLLDDRGAA-ELGAVRWALARAGGSPLDPDASLAEAGVR----DGE-- 73 (452)
T ss_pred EEEEEeeCCe--eeeeecCCCCcHHHHHHHHHHHhCccccc-CCCCcceEEecCCCCCCCCCCCHHHcCCC----CCC--
Confidence 5666665543 34678888889999888875432111100 10123334433 67799999999999999 999
Q ss_pred EEEEEEcc
Q 033457 87 TMHVVIQP 94 (119)
Q Consensus 87 ~vhlv~~~ 94 (119)
+++|....
T Consensus 74 ~L~L~p~~ 81 (452)
T TIGR02958 74 LLVLVPAS 81 (452)
T ss_pred eEEEeeCC
Confidence 88887643
No 149
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=28.51 E-value=1.4e+02 Score=18.00 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=34.9
Q ss_pred EEEEEEeCCCc---eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCC
Q 033457 8 VELKFRIYDGT---DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEN 67 (119)
Q Consensus 8 i~ik~~~~~g~---~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D 67 (119)
|.|+|...+|. .-.++.++.+.|..+|-+.|-.=.+... .+-...++..|..|.+
T Consensus 2 v~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~-----~~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 2 VQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEE-----EPVPFDFLINGEELRT 59 (65)
T ss_pred EEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCC-----CCCcEEEEECCEEeec
Confidence 67777777662 1126889999999999876622111221 1455777888887754
No 150
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=28.35 E-value=1.4e+02 Score=17.86 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=32.7
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
++.+++..|+.+|=+.+ +++ ...+-+.+.|.++.-..- +.+ ++ +|+
T Consensus 9 ~~~~~~~~tl~~ll~~l---------~~~--~~~vav~~N~~iv~r~~~-~~~-L~----~gD 54 (65)
T PRK05863 9 QVEVDEQTTVAALLDSL---------GFP--EKGIAVAVDWSVLPRSDW-ATK-LR----DGA 54 (65)
T ss_pred EEEcCCCCcHHHHHHHc---------CCC--CCcEEEEECCcCcChhHh-hhh-cC----CCC
Confidence 56788888998887766 466 788999999998853221 234 67 777
No 151
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=27.70 E-value=1e+02 Score=25.62 Aligned_cols=54 Identities=11% Similarity=0.014 Sum_probs=42.4
Q ss_pred eEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCC--CCcccCCccccCCCCC
Q 033457 20 ICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEND--RTLADSRITVGDLPSG 84 (119)
Q Consensus 20 ~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~--~tL~~~~i~~~~~~~~ 84 (119)
..++.+..+.....|+..+ +-..+++ .+..-|||+++.|.++ ..|.++++. .++
T Consensus 14 ~~~i~v~~dg~L~nl~aL~-----~~d~g~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~----~~d 69 (380)
T KOG0012|consen 14 KFPIPVTTDGELNNLAALC-----WKDTGIV--YDPSDLIYNPRPLVSNESQGLTQIGLK----DGD 69 (380)
T ss_pred eeccccccccchhhHHHHH-----HHHhCcc--cchhhcccCCCccccchhhhhhhcccc----cce
Confidence 3466777777888888888 5456788 8889999999999755 568888888 666
No 152
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=27.03 E-value=1.4e+02 Score=19.33 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=33.5
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK 63 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk 63 (119)
|+|||-+.+.+ +.+.+...-...+|.+++ .+..|.+ +-|.|..+
T Consensus 1 vRiKfE~~gEK--RIi~f~RPvkf~dl~~kv-----~~afGq~-----mdl~ytn~ 44 (79)
T cd06405 1 VRIKFEHNGEK--RIIQFPRPVKFKDLQQKV-----TTAFGQP-----MDLHYTNN 44 (79)
T ss_pred CeEEEEecCce--EEEecCCCccHHHHHHHH-----HHHhCCe-----eeEEEecc
Confidence 57888888865 458999999999999999 6555554 55777766
No 153
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=26.47 E-value=1.5e+02 Score=17.67 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=25.7
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE 66 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~ 66 (119)
++++....||.+|-+++ . ++ ...+.+-..|+++.
T Consensus 9 ~~~~~~~~tl~~ll~~l-----~----~~--~~~vaVavN~~iv~ 42 (66)
T PRK08053 9 PMQCAAGQTVHELLEQL-----N----QL--QPGAALAINQQIIP 42 (66)
T ss_pred EEEcCCCCCHHHHHHHc-----C----CC--CCcEEEEECCEEeC
Confidence 56888888999998877 2 23 45578888999885
No 154
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=24.48 E-value=1.8e+02 Score=17.95 Aligned_cols=34 Identities=32% Similarity=0.247 Sum_probs=28.0
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE 66 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~ 66 (119)
+++++...|+++|=+++ +++ +...-+.+.|.++.
T Consensus 11 ~~e~~~~~tv~dLL~~l---------~~~--~~~vav~vNg~iVp 44 (68)
T COG2104 11 EVEIAEGTTVADLLAQL---------GLN--PEGVAVAVNGEIVP 44 (68)
T ss_pred EEEcCCCCcHHHHHHHh---------CCC--CceEEEEECCEEcc
Confidence 56888889999998877 466 78888899999886
No 155
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=23.48 E-value=2.1e+02 Score=21.88 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=26.6
Q ss_pred CCCCceeEEEEEEeCC-Cc------eeEEEeecCCccHHHHHHHcccc
Q 033457 1 MGEGEECVELKFRIYD-GT------DICHGTYASSTTVATLKQQLVAE 41 (119)
Q Consensus 1 ~~~~~~~i~ik~~~~~-g~------~~~~~~~~~~~TV~~LK~~I~~~ 41 (119)
|+| +..|+|++.--+ ++ +...+.+++.+||.++=..|..+
T Consensus 1 ~~~-~~~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~ 47 (244)
T PRK12385 1 MAE-MKNLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDN 47 (244)
T ss_pred CCC-CcEEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHh
Confidence 666 778999955433 22 22345566999999998888443
No 156
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=23.39 E-value=1.3e+02 Score=19.72 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=30.5
Q ss_pred EEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc
Q 033457 11 KFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG 62 (119)
Q Consensus 11 k~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G 62 (119)
|+.+.+ +++-+.++..-|-+.|+++| .....+| ...+-+-|--
T Consensus 4 Kv~~~g--~~RRf~~~~~pt~~~L~~kl-----~~Lf~lp--~~~~~vtYiD 46 (82)
T cd06397 4 KSSFLG--DTRRIVFPDIPTWEALASKL-----ENLYNLP--EIKVGVTYID 46 (82)
T ss_pred EEEeCC--ceEEEecCCCccHHHHHHHH-----HHHhCCC--hhHeEEEEEc
Confidence 444444 45667888888899999999 7777888 5556666643
No 157
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=22.59 E-value=1.5e+02 Score=21.77 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=25.4
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHH
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQ 37 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~ 37 (119)
.+.|+|.|...+|..+ .+..---+||.++-..
T Consensus 41 ~e~i~Itfv~~dG~~~-~i~g~vGdtlLd~ah~ 72 (159)
T KOG3309|consen 41 VEDIKITFVDPDGEEI-KIKGKVGDTLLDAAHE 72 (159)
T ss_pred CceEEEEEECCCCCEE-EeeeecchHHHHHHHH
Confidence 3459999999999765 6788888899888543
No 158
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=22.08 E-value=4.4e+02 Score=21.49 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=27.0
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE 66 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~ 66 (119)
.++++...||.+|-+.+ +++ ...+-+.++|+++.
T Consensus 9 ~~el~e~~TL~dLL~~L---------~i~--~~~VAVeVNgeIVp 42 (326)
T PRK11840 9 PRQVPAGLTIAALLAEL---------GLA--PKKVAVERNLEIVP 42 (326)
T ss_pred EEecCCCCcHHHHHHHc---------CCC--CCeEEEEECCEECC
Confidence 46888888999887766 455 77888889999885
No 159
>PRK01777 hypothetical protein; Validated
Probab=21.39 E-value=2.5e+02 Score=18.45 Aligned_cols=56 Identities=9% Similarity=-0.053 Sum_probs=31.2
Q ss_pred eEEEEEEeC--CCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC
Q 033457 7 CVELKFRIY--DGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE 66 (119)
Q Consensus 7 ~i~ik~~~~--~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~ 66 (119)
.|.|.+-.+ +-.....+++...+||.++=+.+ .+++....+. .+...+.-.|+...
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s--gi~~~~pei~--~~~~~vgI~Gk~v~ 60 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS--GLLELRTDID--LAKNKVGIYSRPAK 60 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc--CCCccCcccc--cccceEEEeCeECC
Confidence 455555544 43334567888999999987765 3333221222 22345555666554
No 160
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=20.86 E-value=1.5e+02 Score=19.00 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=23.8
Q ss_pred CCccHHHHHHHcccccCCCccCCCC-C-CCcEEEEEccee----eCCCCCcccCCccccCCCCC
Q 033457 27 SSTTVATLKQQLVAEWPQGKTITPK-S-INDVKLIHAGKI----LENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 27 ~~~TV~~LK~~I~~~wp~~~~~~p~-~-~~~qrLi~~Gk~----L~D~~tL~~~~i~~~~~~~~ 84 (119)
..+|+.+|-+.|..+ ..++.+ . .-.-++||..-. -..+++|++++|. +|+
T Consensus 7 ~~~TL~~lv~~Vlk~----~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~----~gs 62 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKK----KLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIV----NGS 62 (87)
T ss_dssp TT-BHHHHHHHCCCC----CS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT------TT-
T ss_pred hhCcHHHHHHHHHHh----ccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCC----CCC
Confidence 457899999987543 223220 0 124455554432 1124678999999 777
No 161
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=20.42 E-value=2.5e+02 Score=18.08 Aligned_cols=46 Identities=7% Similarity=-0.034 Sum_probs=33.3
Q ss_pred EEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc
Q 033457 11 KFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG 62 (119)
Q Consensus 11 k~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G 62 (119)
.+-+++|... .+.+.+.+|+.++=+.. -...++.++..-+||=+.+
T Consensus 3 ~V~lPn~~~~-~v~vrp~~tv~dvLe~a-----Ck~~~ldp~eh~Lrlk~~~ 48 (77)
T cd01818 3 WVCLPDNQPV-LTYLRPGMSVEDFLESA-----CKRKQLDPMEHYLRLKFLR 48 (77)
T ss_pred EEECCCCceE-EEEECCCCCHHHHHHHH-----HHhcCCChhHheeEEEEEe
Confidence 4678888654 68999999999999888 4445566555667775443
No 162
>PF12039 DUF3525: Protein of unknown function (DUF3525); InterPro: IPR021912 This family of proteins is functionally uncharacterised. This protein is found in viruses. Proteins in this family are about 360 amino acids in length.
Probab=20.02 E-value=1.2e+02 Score=24.63 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=22.0
Q ss_pred CcEEEEEcceeeC-CCCCcccC-Cccc--cC-CCCCeeEEEEEE
Q 033457 54 NDVKLIHAGKILE-NDRTLADS-RITV--GD-LPSGVTTMHVVI 92 (119)
Q Consensus 54 ~~qrLi~~Gk~L~-D~~tL~~~-~i~~--~~-~~~~~~~vhlv~ 92 (119)
..--+||.||+.. |..++.+. ++.- .. .+|. ++|||.
T Consensus 25 tnsmivyeg~fv~~~~tsvg~~fkltks~rp~~~g~--~~hlvp 66 (453)
T PF12039_consen 25 TNSMIVYEGRFVNQDATSVGDPFKLTKSRRPLKAGH--TVHLVP 66 (453)
T ss_pred CCceEEEeeeecCCCccccCChhhcccccccCCCCc--eEEech
Confidence 4556889999995 55556554 1110 00 1677 888864
Done!