Query 033457
Match_columns 119
No_of_seqs 128 out of 1020
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 03:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 8.8E-34 3E-38 198.0 12.4 115 3-119 12-126 (126)
2 2gow_A HCG-1 protein, ubiquiti 100.0 9.9E-29 3.4E-33 172.2 10.5 109 5-119 15-125 (125)
3 1wgh_A Ubiquitin-like 3, HCG-1 99.9 1.5E-23 5E-28 144.4 12.1 93 5-102 14-107 (116)
4 3plu_A Ubiquitin-like modifier 99.8 7.5E-19 2.5E-23 116.6 8.3 75 3-91 17-91 (93)
5 3phx_B Ubiquitin-like protein 99.8 1.2E-18 4E-23 110.5 8.5 77 6-96 3-79 (79)
6 1wgd_A Homocysteine-responsive 99.8 7.4E-19 2.5E-23 115.2 6.2 84 2-98 2-90 (93)
7 2faz_A Ubiquitin-like containi 99.8 3.4E-18 1.2E-22 107.9 9.0 76 7-95 2-78 (78)
8 2daf_A FLJ35834 protein; hypot 99.8 1.4E-18 4.9E-23 119.5 7.7 84 3-99 11-94 (118)
9 1wy8_A NP95-like ring finger p 99.8 4.1E-18 1.4E-22 110.2 8.8 82 3-97 3-85 (89)
10 2uyz_B Small ubiquitin-related 99.8 1.9E-18 6.7E-23 109.5 6.7 79 5-97 1-79 (79)
11 4fbj_B NEDD8; effector-HOST ta 99.7 3E-18 1E-22 111.4 7.6 80 8-101 1-80 (88)
12 3dbh_I NEDD8; cell cycle, acti 99.7 2.8E-18 9.7E-23 110.3 7.2 80 4-97 9-88 (88)
13 3v6c_B Ubiquitin; structural g 99.7 6E-18 2E-22 110.3 8.1 77 5-95 15-91 (91)
14 2dzi_A Ubiquitin-like protein 99.7 4.5E-18 1.5E-22 107.7 7.3 79 3-95 3-81 (81)
15 1uh6_A Ubiquitin-like 5; beta- 99.7 2.7E-18 9.1E-23 115.4 6.4 76 3-92 24-99 (100)
16 4dwf_A HLA-B-associated transc 99.7 1.1E-17 3.8E-22 108.5 8.8 80 5-99 3-82 (90)
17 4eew_A Large proline-rich prot 99.7 8.8E-18 3E-22 108.5 8.2 76 3-93 13-88 (88)
18 1wju_A NEDD8 ultimate buster-1 99.7 5.1E-18 1.7E-22 114.0 6.9 76 8-98 16-95 (100)
19 4hcn_B Polyubiquitin, ubiquiti 99.7 6.1E-18 2.1E-22 112.0 7.1 80 4-97 19-98 (98)
20 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.1E-17 3.6E-22 106.7 7.9 79 6-98 2-80 (85)
21 2wyq_A HHR23A, UV excision rep 99.7 2E-17 6.7E-22 105.8 8.8 77 6-96 4-83 (85)
22 3n3k_B Ubiquitin; hydrolase, p 99.7 8.7E-18 3E-22 107.2 7.1 79 6-98 2-80 (85)
23 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.5E-17 5E-22 107.0 8.2 81 4-98 4-84 (87)
24 2kan_A Uncharacterized protein 99.7 1.4E-17 4.8E-22 109.9 7.8 78 6-98 14-92 (94)
25 1ndd_A NEDD8, protein (ubiquit 99.7 1.9E-17 6.4E-22 103.2 7.8 76 8-97 1-76 (76)
26 2hj8_A Interferon-induced 17 k 99.7 1E-17 3.6E-22 108.7 6.8 78 7-98 4-81 (88)
27 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2.1E-17 7.1E-22 108.2 8.3 80 8-101 2-81 (96)
28 2kk8_A Uncharacterized protein 99.7 1.3E-17 4.5E-22 108.0 6.8 75 6-94 9-84 (84)
29 1wyw_B Ubiquitin-like protein 99.7 1.6E-17 5.3E-22 110.0 7.2 78 6-97 20-97 (97)
30 3a9j_A Ubiquitin; protein comp 99.7 3.5E-17 1.2E-21 101.9 8.3 76 8-97 1-76 (76)
31 3m62_B UV excision repair prot 99.7 1.8E-17 6E-22 111.5 7.2 76 8-97 2-77 (106)
32 1yqb_A Ubiquilin 3; structural 99.7 2.8E-17 9.4E-22 109.6 7.8 81 2-97 17-97 (100)
33 1uel_A HHR23B, UV excision rep 99.7 5.2E-17 1.8E-21 106.9 9.0 78 8-99 1-81 (95)
34 3vdz_A Ubiquitin-40S ribosomal 99.7 4.6E-17 1.6E-21 110.3 8.8 79 5-97 33-111 (111)
35 1j8c_A Ubiquitin-like protein 99.7 4.1E-17 1.4E-21 113.0 8.7 83 1-98 26-108 (125)
36 4a20_A Ubiquitin-like protein 99.7 8.6E-17 2.9E-21 107.4 9.9 78 5-95 17-97 (98)
37 1wia_A Hypothetical ubiquitin- 99.7 1.2E-16 4.1E-21 104.8 10.2 80 3-99 3-83 (95)
38 2kdb_A Homocysteine-responsive 99.7 1.1E-17 3.6E-22 112.0 5.0 76 5-91 21-99 (99)
39 3u5c_f 40S ribosomal protein S 99.7 1.4E-18 4.7E-23 124.3 0.5 89 8-110 1-89 (152)
40 2bwf_A Ubiquitin-like protein 99.7 1.2E-16 4.1E-21 100.2 9.0 72 8-94 5-76 (77)
41 1we7_A SF3A1 protein; structur 99.7 7.4E-17 2.5E-21 109.7 8.3 80 6-99 24-113 (115)
42 4ajy_B Transcription elongatio 99.7 4E-17 1.4E-21 112.5 6.8 75 12-95 5-82 (118)
43 1wx8_A Riken cDNA 4931431F19; 99.7 2.4E-17 8.3E-22 108.2 5.4 80 5-99 15-94 (96)
44 1sif_A Ubiquitin; hydrophobic 99.7 6.5E-17 2.2E-21 105.1 7.1 77 7-97 9-85 (88)
45 1v2y_A 3300001G02RIK protein; 99.7 1.9E-17 6.4E-22 112.0 4.6 86 3-100 3-102 (105)
46 2lxa_A Ubiquitin-like protein 99.7 7.4E-17 2.5E-21 105.6 7.1 76 8-96 2-80 (87)
47 1wx7_A Ubiquilin 3; ubiquitin- 99.7 9.7E-17 3.3E-21 107.5 7.6 80 4-98 14-93 (106)
48 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.6E-16 5.6E-21 105.9 8.7 78 4-96 22-99 (101)
49 1ttn_A DC-UBP, dendritic cell- 99.7 1.1E-16 3.9E-21 107.3 7.8 78 6-97 22-99 (106)
50 1v5o_A 1700011N24RIK protein; 99.7 7.7E-17 2.6E-21 107.5 6.6 83 3-98 3-89 (102)
51 1yx5_B Ubiquitin; proteasome, 99.7 2.2E-16 7.4E-21 104.1 8.6 78 8-99 1-78 (98)
52 1wgg_A Ubiquitin carboxyl-term 99.7 1.5E-16 5.2E-21 105.4 7.3 79 2-96 2-81 (96)
53 1we6_A Splicing factor, putati 99.7 1.3E-16 4.6E-21 107.7 7.0 79 6-98 26-108 (111)
54 2fnj_B Transcription elongatio 99.7 7.4E-17 2.5E-21 111.2 5.4 75 8-93 3-80 (118)
55 2kdi_A Ubiquitin, vacuolar pro 99.7 3.4E-16 1.2E-20 106.6 8.6 80 6-99 8-87 (114)
56 3rt3_B Ubiquitin-like protein 99.7 3.2E-16 1.1E-20 110.9 8.5 78 7-98 81-158 (159)
57 4b6w_A Tubulin-specific chaper 99.7 5.7E-16 1.9E-20 101.0 9.0 76 7-95 2-85 (86)
58 2ojr_A Ubiquitin; lanthide-bin 99.7 4.8E-16 1.7E-20 105.0 9.0 78 6-97 34-111 (111)
59 3l0w_B Monoubiquitinated proli 99.7 3.4E-16 1.1E-20 113.3 8.6 79 8-100 1-79 (169)
60 2l7r_A Ubiquitin-like protein 99.7 1.2E-16 4.2E-21 104.9 5.5 76 6-97 18-93 (93)
61 3m63_B Ubiquitin domain-contai 99.6 6.5E-17 2.2E-21 108.0 3.7 75 6-95 27-101 (101)
62 3b1l_X E3 ubiquitin-protein li 99.5 1.2E-17 4.1E-22 104.8 0.0 75 8-96 1-75 (76)
63 1x1m_A Ubiquitin-like protein 99.6 4.1E-16 1.4E-20 104.8 6.8 79 5-97 10-103 (107)
64 3u30_A Ubiquitin, linear DI-ub 99.6 1.7E-15 5.7E-20 108.8 8.9 80 4-97 17-96 (172)
65 1wxv_A BAG-family molecular ch 99.6 9.1E-16 3.1E-20 100.0 6.9 80 3-97 3-88 (92)
66 4dbg_A Ranbp-type and C3HC4-ty 99.6 3.2E-15 1.1E-19 101.1 9.5 75 7-94 22-100 (105)
67 3q3f_A Ribonuclease/ubiquitin 99.6 9.8E-16 3.4E-20 113.0 6.9 78 7-98 105-182 (189)
68 1v5t_A 8430435I17RIK protein; 99.6 1E-15 3.5E-20 99.9 5.5 78 3-95 3-84 (90)
69 2kd0_A LRR repeats and ubiquit 99.6 3.4E-15 1.2E-19 96.6 7.9 73 7-94 12-84 (85)
70 3u5e_m 60S ribosomal protein L 99.6 8.5E-17 2.9E-21 111.3 0.0 77 8-98 1-77 (128)
71 3b08_A Polyubiquitin-C, ubiqui 99.6 6.5E-15 2.2E-19 102.5 8.9 77 7-97 76-152 (152)
72 3u30_A Ubiquitin, linear DI-ub 99.6 2.7E-15 9.1E-20 107.7 6.7 76 8-97 97-172 (172)
73 2kjr_A CG11242; UBL, ubiquitin 99.6 4.4E-15 1.5E-19 98.5 7.2 74 5-91 13-93 (95)
74 3rt3_B Ubiquitin-like protein 99.6 7.2E-15 2.5E-19 103.9 7.8 76 8-97 3-81 (159)
75 2kj6_A Tubulin folding cofacto 99.6 6.4E-15 2.2E-19 98.1 6.5 79 2-93 9-95 (97)
76 3b08_A Polyubiquitin-C, ubiqui 99.5 1.7E-14 5.8E-19 100.3 8.3 76 8-97 1-76 (152)
77 1v86_A DNA segment, CHR 7, way 99.5 3.4E-15 1.2E-19 98.5 4.0 74 5-94 15-88 (95)
78 1v6e_A Cytoskeleton-associated 99.5 2E-14 6.7E-19 94.6 7.1 81 3-96 3-90 (95)
79 2xzm_9 RPS31E; ribosome, trans 99.5 2.4E-15 8.1E-20 111.0 0.8 73 8-99 1-73 (189)
80 1oqy_A HHR23A, UV excision rep 99.5 2.5E-14 8.4E-19 114.7 6.7 83 5-97 5-87 (368)
81 2dzj_A Synaptic glycoprotein S 99.5 4.7E-14 1.6E-18 92.1 6.0 71 7-90 10-85 (88)
82 3ai5_A Yeast enhanced green fl 99.5 6.5E-14 2.2E-18 109.9 7.6 76 5-94 231-306 (307)
83 1wf9_A NPL4 family protein; be 99.5 4.9E-14 1.7E-18 94.8 4.9 78 2-94 2-95 (107)
84 1t0y_A Tubulin folding cofacto 99.5 3.1E-13 1.1E-17 92.8 8.6 77 7-96 6-89 (122)
85 2io1_B Small ubiquitin-related 99.4 3E-13 1E-17 89.4 8.0 80 5-98 5-84 (94)
86 2dzm_A FAS-associated factor 1 99.4 6.2E-14 2.1E-18 93.9 4.5 76 6-97 8-85 (100)
87 2io0_B Small ubiquitin-related 99.4 2E-12 6.8E-17 85.1 8.6 79 6-98 4-82 (91)
88 3shq_A UBLCP1; phosphatase, hy 99.3 9.8E-13 3.3E-17 103.5 6.2 76 5-95 3-81 (320)
89 2d07_B Ubiquitin-like protein 99.3 5.6E-12 1.9E-16 83.0 8.4 78 5-96 15-92 (93)
90 1wm3_A Ubiquitin-like protein 99.3 1.1E-11 3.6E-16 77.8 7.0 70 8-91 2-71 (72)
91 2kzr_A Ubiquitin thioesterase 99.3 2.7E-12 9.2E-17 82.8 4.2 71 8-93 1-77 (86)
92 1wz0_A Ubiquitin-like protein 99.3 7.2E-12 2.5E-16 84.3 5.8 79 5-97 22-100 (104)
93 3a4r_A Nfatc2-interacting prot 99.2 2E-11 6.8E-16 78.0 6.9 74 5-91 5-78 (79)
94 2eke_C Ubiquitin-like protein 99.2 5.1E-11 1.8E-15 80.4 8.0 77 5-96 29-105 (106)
95 2k8h_A Small ubiquitin protein 99.2 1.7E-11 5.8E-16 83.3 4.5 78 6-97 25-102 (110)
96 1wjn_A Tubulin-folding protein 99.2 3.1E-10 1.1E-14 74.5 9.5 77 5-95 7-94 (97)
97 3kyd_D Small ubiquitin-related 98.9 7.6E-09 2.6E-13 70.7 8.8 76 5-94 38-113 (115)
98 3pge_A SUMO-modified prolifera 98.8 1.3E-08 4.5E-13 75.5 8.3 80 5-99 27-106 (200)
99 3tix_A Ubiquitin-like protein 98.7 3E-08 1E-12 73.4 6.1 79 5-98 55-133 (207)
100 4efo_A Serine/threonine-protei 98.3 2.8E-06 9.4E-11 56.1 8.2 51 9-66 14-64 (94)
101 3v7o_A Minor nucleoprotein VP3 98.3 7.6E-08 2.6E-12 72.1 0.1 79 5-98 19-97 (227)
102 2pjh_A Protein NPL4, nuclear p 98.2 2.2E-07 7.5E-12 59.3 1.1 69 7-90 4-77 (80)
103 2jxx_A Nfatc2-interacting prot 98.2 4.7E-06 1.6E-10 55.1 7.3 74 4-90 22-95 (97)
104 3uf8_A Ubiquitin-like protein 98.1 6.9E-06 2.4E-10 60.7 7.2 78 5-97 19-96 (209)
105 3goe_A DNA repair protein RAD6 98.1 1.8E-05 6.3E-10 50.6 7.9 71 7-91 9-80 (82)
106 3qx1_A FAS-associated factor 1 98.1 1.3E-05 4.4E-10 51.1 7.0 74 2-90 2-80 (84)
107 3ix6_A TS, tsase, thymidylate 98.0 5.8E-07 2E-11 71.8 -0.1 81 4-99 18-98 (360)
108 2l76_A Nfatc2-interacting prot 97.8 9E-05 3.1E-09 48.8 7.2 73 5-92 19-91 (95)
109 4da1_A Protein phosphatase 1K, 97.6 7.5E-06 2.6E-10 65.1 0.0 79 5-98 28-106 (389)
110 2dzk_A UBX domain-containing p 97.6 0.00017 5.7E-09 48.2 6.6 76 4-93 10-90 (109)
111 1wj4_A KIAA0794 protein; UBX d 97.6 0.00025 8.4E-09 48.5 7.2 68 4-84 40-112 (124)
112 2cr5_A Reproduction 8; UBX dom 97.2 0.00079 2.7E-08 44.8 5.8 72 5-91 21-96 (109)
113 1s3s_G P47 protein; AAA ATPase 97.2 0.00065 2.2E-08 46.5 5.2 67 4-77 49-118 (127)
114 2kc2_A Talin-1, F1; FERM, adhe 97.1 0.00035 1.2E-08 48.3 3.6 70 9-90 13-119 (128)
115 2bps_A YUKD protein; ubiquitin 96.8 0.0057 1.9E-07 39.0 6.8 71 6-84 3-76 (81)
116 3ivf_A Talin-1; FERM domain, c 96.8 0.01 3.6E-07 46.4 9.8 70 6-84 2-77 (371)
117 2al3_A TUG long isoform; TUG U 96.2 0.012 4E-07 38.3 5.8 75 9-97 11-85 (90)
118 4e71_A Plexin-B2, MM1; transme 95.9 0.048 1.7E-06 36.6 7.7 81 5-92 9-109 (111)
119 2r2o_A Plexin-B1; effector dom 95.0 0.2 7E-06 34.8 8.7 83 6-95 23-130 (138)
120 3h6n_A Plexin-D1; structural g 94.7 0.26 9E-06 33.8 8.4 81 6-93 3-104 (127)
121 3ge3_C Toluene-4-monooxygenase 94.7 0.48 1.7E-05 30.2 9.1 78 6-91 2-81 (84)
122 4e74_A Plexin-A4; RBD, structu 92.7 0.34 1.2E-05 32.7 6.1 82 6-94 12-115 (117)
123 2inc_C TOUB protein; DIIRON, 4 91.3 1.8 6.2E-05 27.5 10.7 70 9-84 3-75 (83)
124 3jyu_A Ubiquitin carboxyl-term 90.8 1.9 6.3E-05 31.7 8.9 66 8-84 140-213 (231)
125 3hm6_X Plexin-B1; structural g 90.7 2 7E-05 36.5 9.9 82 6-94 256-362 (644)
126 4a3p_A Ubiquitin carboxyl-term 90.3 1.5 5E-05 32.0 7.9 66 8-84 128-201 (217)
127 3kuz_A Plexin-C1; structural g 90.1 3.1 0.00011 28.3 8.7 78 7-91 19-124 (126)
128 1ef1_A Moesin; membrane, FERM 89.0 2 7E-05 31.9 8.0 75 7-93 1-80 (294)
129 3ig3_A Plxna3 protein; plexin 88.7 4.3 0.00015 34.4 10.4 82 6-94 232-335 (627)
130 2i1j_A Moesin; FERM, coiled-co 87.8 2.8 9.5E-05 34.9 8.7 76 6-93 3-83 (575)
131 1vjk_A Molybdopterin convertin 87.7 3.1 0.00011 26.2 7.2 69 7-84 9-87 (98)
132 2l32_A Small archaeal modifier 87.6 1.2 3.9E-05 27.3 4.8 49 9-69 2-50 (74)
133 1h4r_A Merlin; FERM, neurofibr 87.3 3.5 0.00012 31.0 8.4 77 5-93 20-100 (314)
134 2v1y_A Phosphatidylinositol-4, 86.0 1.1 3.7E-05 29.8 4.3 35 6-41 18-52 (108)
135 2c7h_A RBBP6, retinoblastoma-b 85.0 1.2 4.3E-05 28.4 4.0 31 10-40 9-40 (86)
136 2juo_A GA-binding protein alph 84.9 4.9 0.00017 25.7 6.7 66 21-97 5-70 (89)
137 1vd2_A Protein kinase C, IOTA 84.5 2.6 8.8E-05 26.9 5.4 51 5-63 4-54 (89)
138 3ivf_A Talin-1; FERM domain, c 82.9 6 0.00021 30.5 8.1 75 6-93 84-167 (371)
139 3po0_A Small archaeal modifier 82.0 4 0.00014 25.0 5.6 59 17-84 16-78 (89)
140 1oey_A P67-PHOX, neutrophil cy 81.8 1.9 6.6E-05 27.2 4.0 48 6-63 4-51 (83)
141 2daj_A KIAA0977 protein, COBL- 79.1 2 6.9E-05 27.6 3.3 65 5-77 8-75 (91)
142 1ryj_A Unknown; beta/alpha pro 78.3 8.2 0.00028 22.8 7.0 49 8-69 5-53 (70)
143 1fm0_D Molybdopterin convertin 77.4 2.3 7.9E-05 25.5 3.2 52 26-90 23-74 (81)
144 3qij_A Protein 4.1; cytoskelet 75.6 5.7 0.00019 29.9 5.7 76 5-93 15-95 (296)
145 2kvr_A Ubiquitin carboxyl-term 73.6 1.6 5.6E-05 29.5 1.9 34 22-62 59-92 (130)
146 3rpf_C Molybdopterin convertin 73.5 12 0.0004 22.2 7.3 66 9-90 2-67 (74)
147 2y3a_A Phosphatidylinositol-4, 73.1 11 0.00039 33.8 7.7 83 4-94 48-137 (1092)
148 1wgr_A Growth factor receptor- 70.8 14 0.00047 24.0 5.9 63 5-74 7-75 (100)
149 4eut_A Serine/threonine-protei 70.0 11 0.00037 28.7 6.1 49 19-74 322-372 (396)
150 1ip9_A BEM1 protein; ubiquitin 65.6 9.6 0.00033 24.2 4.1 31 6-38 11-41 (85)
151 3au4_A Myosin-X; protein-prote 60.2 18 0.00061 29.4 5.9 49 6-60 215-263 (555)
152 1rws_A Hypothetical protein PF 57.4 7.4 0.00025 23.4 2.5 38 22-70 24-61 (77)
153 1wgk_A Riken cDNA 2900073H19 p 57.1 37 0.0013 22.1 8.7 41 6-46 10-60 (114)
154 2kmm_A Guanosine-3',5'-BIS(dip 54.5 18 0.00062 20.8 3.9 27 9-38 2-28 (73)
155 1f0z_A THis protein; ubiquitin 52.4 31 0.0011 19.7 4.7 34 22-66 9-42 (66)
156 2ylm_A Ubiquitin carboxyl-term 48.7 9.4 0.00032 31.4 2.4 33 22-61 39-71 (530)
157 3hhm_A Phosphatidylinositol-4, 48.3 17 0.00059 32.8 4.2 80 6-95 41-129 (1091)
158 2qjl_A URM1, ubiquitin-related 47.3 37 0.0013 21.1 4.7 28 17-44 18-47 (99)
159 2q5w_D Molybdopterin convertin 44.8 25 0.00085 20.5 3.4 47 21-84 18-66 (77)
160 3qa8_A MGC80376 protein; kinas 44.1 20 0.00069 30.3 3.8 48 20-74 323-371 (676)
161 1tyg_B YJBS; alpha beta barrel 41.0 63 0.0021 20.0 7.4 47 22-84 29-76 (87)
162 3pvl_A Myosin VIIA isoform 1; 40.0 51 0.0017 27.7 5.7 48 6-60 262-309 (655)
163 2jrh_A Mitogen-activated prote 39.8 43 0.0015 21.4 4.0 48 6-65 3-50 (94)
164 2hj1_A Hypothetical protein; s 39.6 70 0.0024 20.3 5.1 56 7-66 14-69 (97)
165 2ylm_A Ubiquitin carboxyl-term 38.5 1.2E+02 0.0041 24.7 7.6 65 5-74 337-408 (530)
166 2y3a_A Phosphatidylinositol-4, 37.3 71 0.0024 28.8 6.3 68 7-74 218-288 (1092)
167 2cu1_A Mitogen-activated prote 36.0 56 0.0019 21.3 4.2 45 5-61 6-50 (103)
168 4dxa_B KREV interaction trappe 34.9 29 0.00099 26.1 3.1 32 6-38 4-37 (322)
169 2c60_A Human mitogen-activated 31.6 56 0.0019 21.4 3.6 47 5-63 29-75 (111)
170 3dwg_C 9.5 kDa culture filtrat 30.8 90 0.0031 18.8 5.8 61 23-91 21-87 (93)
171 2kl0_A Putative thiamin biosyn 30.6 86 0.0029 18.5 4.9 46 22-84 9-54 (73)
172 3u52_E Phenol hydroxylase comp 28.4 1.3E+02 0.0045 20.0 6.9 57 22-84 41-102 (119)
173 1q1o_A Cell division control p 27.8 1.2E+02 0.0042 19.3 5.0 32 7-38 5-42 (98)
174 2cu3_A Unknown function protei 27.6 87 0.003 17.6 4.7 49 16-84 5-53 (64)
175 3lyw_A YBBR family protein; st 27.1 45 0.0016 21.0 2.6 25 2-28 53-77 (90)
176 2npt_B Mitogen-activated prote 26.6 76 0.0026 20.5 3.6 47 5-63 18-64 (100)
177 4gmv_A RAS-associated and plec 26.2 1.1E+02 0.0037 23.0 5.0 34 5-39 29-62 (281)
178 3eud_A Protein SHQ1; CS domain 26.0 63 0.0021 21.4 3.2 64 4-90 25-92 (115)
179 1vk1_A Conserved hypothetical 25.3 49 0.0017 24.2 2.9 42 23-72 198-239 (242)
180 2y5c_A Adrenodoxin-like protei 24.7 1.2E+02 0.004 18.8 4.3 29 7-36 5-33 (109)
181 4a6q_A Histone deacetylase com 23.8 85 0.0029 21.6 3.6 64 27-96 62-141 (143)
182 2bt6_A Adrenodoxin 1; rutheniu 23.2 1.3E+02 0.0046 18.5 4.4 31 5-36 4-34 (108)
183 3hk0_A Growth factor receptor- 23.0 1.5E+02 0.005 21.9 5.1 32 7-39 8-39 (256)
184 2wlb_A ETP1-FD, electron trans 22.4 1.4E+02 0.0047 18.2 4.3 31 6-37 2-32 (103)
185 2wxf_A Phosphatidylinositol-4, 22.0 1.7E+02 0.0059 25.8 6.0 68 7-74 85-155 (940)
186 2nnz_A Hypothetical protein; b 21.8 67 0.0023 22.0 2.8 36 1-38 23-61 (153)
187 1jq4_A Methane monooxygenase c 21.7 1.4E+02 0.0048 18.0 4.8 30 7-37 4-33 (98)
188 3onh_A Ubiquitin-activating en 21.2 90 0.0031 21.0 3.3 26 55-84 46-72 (127)
189 2l52_A Methanosarcina acetivor 21.0 1.5E+02 0.0053 18.1 7.0 73 8-90 4-92 (99)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=100.00 E-value=8.8e-34 Score=198.01 Aligned_cols=115 Identities=43% Similarity=0.740 Sum_probs=89.0
Q ss_pred CCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCC
Q 033457 3 EGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLP 82 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~ 82 (119)
|-++.+.|+||+.+|+++.++.+++++||++||++|+++||++++++|+++++|||||+||+|+|+.||++|+|+.++.+
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 44789999999999998878999999999999999999999999999955699999999999999999999999955555
Q ss_pred CCeeEEEEEEccCccccccchhhhcccCCCceEEeeC
Q 033457 83 SGVTTMHVVIQPLVAKKKTEKTKEEMQKQNSCACIIL 119 (119)
Q Consensus 83 ~~~~~vhlv~~~~~~~~~~~~~~~~~~~~~~c~C~i~ 119 (119)
+.+++||||+++++++++ |+.+.++++.+|||+||
T Consensus 92 ~~v~tmhlVlrl~g~~kk--kk~~~~pkk~~C~C~Il 126 (126)
T 1se9_A 92 GAVTTMHVIIQAPVTEKE--KKPKGDPKMNKCVCSVM 126 (126)
T ss_dssp TCCEEEEEEECCCSSCCC--C----------------
T ss_pred CCcEEEEEEeccCCcccc--ccCCCCCCCCCceEEeC
Confidence 556799999999988665 67899999999999997
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.96 E-value=9.9e-29 Score=172.23 Aligned_cols=109 Identities=19% Similarity=0.433 Sum_probs=96.3
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCC-ccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQG-KTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~-~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
...+.|+|++.+|+ ..++++++++||++||++|+.+||.+ .+++|..+++|||||+||+|+|+.+|++|+|+ .+
T Consensus 15 ~~~m~I~vktl~G~-~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~----~~ 89 (125)
T 2gow_A 15 ADMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLP----FG 89 (125)
T ss_dssp TTCEEEEEECTTSC-EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCC----TT
T ss_pred CCeEEEEEEeCCCC-EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCC----CC
Confidence 45699999999984 67999999999999999999999999 57885458999999999999999999999999 88
Q ss_pred CeeEEEEEEccCccccccc-hhhhcccCCCceEEeeC
Q 033457 84 GVTTMHVVIQPLVAKKKTE-KTKEEMQKQNSCACIIL 119 (119)
Q Consensus 84 ~~~~vhlv~~~~~~~~~~~-~~~~~~~~~~~c~C~i~ 119 (119)
+..+|||+++++.+++.++ ++...+++.++| |+||
T Consensus 90 ~~~tlhlv~r~~~~~~~~~~~~~~~~~~~~~C-C~il 125 (125)
T 2gow_A 90 KTTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 125 (125)
T ss_dssp SEEEEEEEECSCCSSSSSCCCCCCCSTTCCCC-CCCC
T ss_pred CceEEEEEecCCCCccccccccccCCCCCCCc-cEeC
Confidence 8779999999998876664 566778888999 9997
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.91 E-value=1.5e-23 Score=144.40 Aligned_cols=93 Identities=17% Similarity=0.360 Sum_probs=81.6
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCC-ccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQG-KTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~-~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
++.+.|+|++.+|+ ..++++++++||++||++|..+||++ .+++|..+++|||||+||+|+|+.+|++|+|+ .+
T Consensus 14 ~~~m~I~vKtl~G~-t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~----~~ 88 (116)
T 1wgh_A 14 ADMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLP----FG 88 (116)
T ss_dssp SSSEEEEEECSSSC-EEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCC----SS
T ss_pred CCeEEEEEEeCCCC-EEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCC----CC
Confidence 67899999999984 67899999999999999999999999 45653238999999999999999999999998 77
Q ss_pred CeeEEEEEEccCccccccc
Q 033457 84 GVTTMHVVIQPLVAKKKTE 102 (119)
Q Consensus 84 ~~~~vhlv~~~~~~~~~~~ 102 (119)
...+|||+++++.+++.++
T Consensus 89 ~~~tlhLvlr~~~~~~~~~ 107 (116)
T 1wgh_A 89 KTTVMHLVARETLPEPNSQ 107 (116)
T ss_dssp CEEEEEEEECSSCSSSCCS
T ss_pred CceEEEEEccCCCCCCCcc
Confidence 7679999999998876553
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.78 E-value=7.5e-19 Score=116.61 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=68.1
Q ss_pred CCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCC
Q 033457 3 EGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLP 82 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~ 82 (119)
.++..|.|.++...|+.. .+.++|++||++||++| ++.+++| +++|||+|+|++|+|+.+|++|+|+ +
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~-~v~v~p~DTI~~LK~~I-----~~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~----d 84 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKV-RVKCLGEDSVGDFKKVL-----SLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVH----D 84 (93)
T ss_dssp ---CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTSBTGGGTCC----T
T ss_pred CCCceEEEEEECCCCCEE-EEEECCcCHHHHHHHHH-----HHHhCCC--HHHEEEEeCCEEccCcCCHHHcCCC----C
Confidence 347889999999999765 79999999999999999 9999999 9999999999999999999999999 9
Q ss_pred CCeeEEEEE
Q 033457 83 SGVTTMHVV 91 (119)
Q Consensus 83 ~~~~~vhlv 91 (119)
|+ ++||.
T Consensus 85 gs--tLhL~ 91 (93)
T 3plu_A 85 QT--NLELY 91 (93)
T ss_dssp TC--EEEEE
T ss_pred CC--EEEEE
Confidence 99 99985
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=110.48 Aligned_cols=77 Identities=25% Similarity=0.218 Sum_probs=70.3
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
..++|.++..+|+. ..+.+++++||++||++| ++..++| +++|||+|+|+.|+|+.+|++|+|. +++
T Consensus 3 ~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i-----~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~----~~~- 69 (79)
T 3phx_B 3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQV-----SGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLK----PLS- 69 (79)
T ss_dssp CCEEEEEECTTSCE-EEEEECTTSBHHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTSBGGGGTCC----TTC-
T ss_pred CCEEEEEEeCCCCE-EEEEECCcChHHHHHHHH-----HhhcCCC--HHHEEEEECCEECCCCCcHHHCCCC----CCC-
Confidence 46899999999965 578999999999999999 7788999 9999999999999999999999999 999
Q ss_pred eEEEEEEccCc
Q 033457 86 TTMHVVIQPLV 96 (119)
Q Consensus 86 ~~vhlv~~~~~ 96 (119)
++||+++.++
T Consensus 70 -~l~l~~rl~G 79 (79)
T 3phx_B 70 -TVFMNLRLRG 79 (79)
T ss_dssp -EEEEEECCBC
T ss_pred -EEEEEEecCC
Confidence 9999998653
No 6
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=7.4e-19 Score=115.16 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=71.2
Q ss_pred CCCceeEEEEEEeCCCce-eEEEeecCCccHHHHHHHcccccCCCcc--CCCCCCCcEEEEEcceeeCCCCCcccC--Cc
Q 033457 2 GEGEECVELKFRIYDGTD-ICHGTYASSTTVATLKQQLVAEWPQGKT--ITPKSINDVKLIHAGKILENDRTLADS--RI 76 (119)
Q Consensus 2 ~~~~~~i~ik~~~~~g~~-~~~~~~~~~~TV~~LK~~I~~~wp~~~~--~~p~~~~~qrLi~~Gk~L~D~~tL~~~--~i 76 (119)
+++++.+.|+|+..+|.. ...+++++++||.+||++| ++.. ++| +++|||||+||+|+|+.+|++| +|
T Consensus 2 ~~~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I-----~~~~~~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i 74 (93)
T 1wgd_A 2 SSGSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHL-----SRVYPERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQ 74 (93)
T ss_dssp CCCSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHH-----HHHSTTCCC--TTTCEEEETTEECCSSSCHHHHSCSS
T ss_pred CCCCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHH-----HHHhcCCCC--hHHeEEEECCEECcCcCCHHHHhcCC
Confidence 455788999999998862 1245566999999999999 5544 788 9999999999999999999999 99
Q ss_pred cccCCCCCeeEEEEEEccCccc
Q 033457 77 TVGDLPSGVTTMHVVIQPLVAK 98 (119)
Q Consensus 77 ~~~~~~~~~~~vhlv~~~~~~~ 98 (119)
. +++ +|||+++.+++.
T Consensus 75 ~----~~~--~i~lv~~~~gg~ 90 (93)
T 1wgd_A 75 E----KRH--VLHLVCNVKSGP 90 (93)
T ss_dssp S----CSE--EEEEECCCCCCC
T ss_pred C----CCC--EEEEEeCCCCCC
Confidence 9 888 999999988764
No 7
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.4e-18 Score=107.94 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=69.3
Q ss_pred eEEEEEEeCCCceeEEEe-ecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 7 CVELKFRIYDGTDICHGT-YASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~-~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
.++|+++..+|+....++ +++++||.+||++| ++..++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i-----~~~~gip--~~~qrL~~~g~~L~d~~tL~~~~i~----~g~- 69 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKI-----QELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVR----LND- 69 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTCBTTTTTCC----TTC-
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHH-----HHHHCcC--hhhEEEEECCEECCCCCCHHHcCCC----CCC-
Confidence 478999999887654788 99999999999999 7788999 9999999999999999999999999 999
Q ss_pred eEEEEEEccC
Q 033457 86 TTMHVVIQPL 95 (119)
Q Consensus 86 ~~vhlv~~~~ 95 (119)
++||+++++
T Consensus 70 -~i~l~~r~~ 78 (78)
T 2faz_A 70 -TIQLLVRQS 78 (78)
T ss_dssp -EEEEEECCC
T ss_pred -EEEEEEeCC
Confidence 999999864
No 8
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=119.53 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCC
Q 033457 3 EGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLP 82 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~ 82 (119)
.++..+.|++.+..+.....++++++.||++||++| +...++| +++|||||+||+|.|+.||++|||. +
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~l-----s~~~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk----~ 79 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHF-----SHLLGIP--HSVLQIRYSGKILKNNETLVQHGVK----P 79 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHH-----HHHHTCC--TTTEEEEETTEEECSSCCHHHHSCC----S
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHH-----HhhhCCC--hHHEEEEECCeEcCCcchHHHcCCC----C
Confidence 357889999986654345689999999999999999 7788999 9999999999999999999999999 9
Q ss_pred CCeeEEEEEEccCcccc
Q 033457 83 SGVTTMHVVIQPLVAKK 99 (119)
Q Consensus 83 ~~~~~vhlv~~~~~~~~ 99 (119)
|. +|||+++...+..
T Consensus 80 g~--TIhLvi~s~~p~~ 94 (118)
T 2daf_A 80 QE--IVQVEIFSTNPDL 94 (118)
T ss_dssp SC--EEEEEEEESCTTT
T ss_pred CC--EEEEEEecCCCcc
Confidence 99 9999999887743
No 9
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=4.1e-18 Score=110.19 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=73.7
Q ss_pred CCceeEEEEEEeCCCceeEEE-eecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCC
Q 033457 3 EGEECVELKFRIYDGTDICHG-TYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDL 81 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~-~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~ 81 (119)
.+...+.|+++..+|+....+ .+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|.
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i-----~~~~gip--~~~qrL~~~gk~L~d~~tL~~~~i~---- 71 (89)
T 1wy8_A 3 SGSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERV-----WALFDVR--PECQRLFYRGKQLENGYTLFDYDVG---- 71 (89)
T ss_dssp CCSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHH-----HHHSCCC--TTTEEEEETTEECCSSSBHHHHTCC----
T ss_pred CCCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHH-----HHHHCcC--hhhEEEEECCeECCCCCCHHHCCCC----
Confidence 456789999999988434578 599999999999999 7778899 9999999999999999999999999
Q ss_pred CCCeeEEEEEEccCcc
Q 033457 82 PSGVTTMHVVIQPLVA 97 (119)
Q Consensus 82 ~~~~~~vhlv~~~~~~ 97 (119)
+++ +|||+++.+++
T Consensus 72 ~g~--~i~l~~~~~gG 85 (89)
T 1wy8_A 72 LND--IIQLLVRPDSG 85 (89)
T ss_dssp TTC--EEEEEECCCCS
T ss_pred CCC--EEEEEEeCCCC
Confidence 999 99999998765
No 10
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.75 E-value=1.9e-18 Score=109.45 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=71.6
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
++.++|+++..+|+. ..+.+++++||.+||++| ++..++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 1 m~~m~i~vk~~~g~~-~~~~v~~~~tv~~lk~~i-----~~~~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~----~~~ 68 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESY-----CQRQGVP--MNSLRFLFEGQRIADNHTPKELGME----EED 68 (79)
T ss_dssp CCEEEEEEECTTCCE-EEEEEETTSCTHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTCCHHHHTCC----TTE
T ss_pred CCeEEEEEECCCCCE-EEEEECCCChHHHHHHHH-----HHHHCCC--cccEEEEECCEEeCCCCCHHHcCCC----CCC
Confidence 357999999999965 578999999999999999 8888999 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCcc
Q 033457 85 VTTMHVVIQPLVA 97 (119)
Q Consensus 85 ~~~vhlv~~~~~~ 97 (119)
++|++++..++
T Consensus 69 --~i~l~~~~~GG 79 (79)
T 2uyz_B 69 --VIEVYQEQTGG 79 (79)
T ss_dssp --EEEEEECCCC-
T ss_pred --EEEEEEeccCC
Confidence 99999987653
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.75 E-value=3e-18 Score=111.44 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=68.4
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|+++..+|+. ..+.+++++||.+||++| ++..++| +++|||+|+|+.|+|+.+|++|+|. +++ +
T Consensus 1 M~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~----~g~--~ 66 (88)
T 4fbj_B 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERV-----EEKEGIP--PQQQRLIYSGKQMNDEKTAADYKIL----GGS--V 66 (88)
T ss_dssp CEEEEEETTCCE-EEEECCTTCBHHHHHHHH-----HHHHCCC--GGGCEEEETTEECCTTSBTTTTTCC----TTC--E
T ss_pred CEEEEEcCCCCE-EEEEECCCCCHHHHHHHH-----HHHHCcC--hhHEEEEECCeECCCCCcHHHcCCC----CCC--E
Confidence 368889888865 478999999999999999 7778899 9999999999999999999999999 999 9
Q ss_pred EEEEEccCcccccc
Q 033457 88 MHVVIQPLVAKKKT 101 (119)
Q Consensus 88 vhlv~~~~~~~~~~ 101 (119)
|||+++.+++....
T Consensus 67 l~l~~rl~Gg~~~~ 80 (88)
T 4fbj_B 67 LHLVLALRGGGGLR 80 (88)
T ss_dssp EEEECBCC------
T ss_pred EEEEEECCCCCCCC
Confidence 99999999886544
No 12
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.75 E-value=2.8e-18 Score=110.29 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=72.5
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
.+..++|+++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. ++
T Consensus 9 ~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i-----~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~----~~ 76 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKE-IEIDIEPTDKVERIKERV-----EEKEGIP--PQQQRLIYSGKQMNDEKTAADYKIL----GG 76 (88)
T ss_dssp CCCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHH-----HHHHCCC--GGGCCEEETTEECCTTSBGGGGTCC----TT
T ss_pred CCCcEEEEEEcCCCCE-EEEEECCCCCHHHHHHHH-----HHHHCcC--HHHEEEEECCeECCCCCcHHHcCCC----CC
Confidence 3678999999988865 578999999999999999 7778899 9999999999999999999999999 99
Q ss_pred CeeEEEEEEccCcc
Q 033457 84 GVTTMHVVIQPLVA 97 (119)
Q Consensus 84 ~~~~vhlv~~~~~~ 97 (119)
+ +|||+++.+++
T Consensus 77 ~--~i~l~~rl~GG 88 (88)
T 3dbh_I 77 S--VLHLVLRLRGG 88 (88)
T ss_dssp C--EEEECCCCCCC
T ss_pred C--EEEEEEeCCCC
Confidence 9 99999987653
No 13
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=6e-18 Score=110.30 Aligned_cols=77 Identities=30% Similarity=0.419 Sum_probs=70.6
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
...++|+++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +|+
T Consensus 15 ~~~m~i~Vk~~~g~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~----~g~ 82 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTH-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES 82 (91)
T ss_dssp CCSEEEEEECTTSCE-EEEEECTTCBHHHHHHHH-----HHHHCCC--GGGCEEEETTEECCTTCBTGGGTCC----TTC
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCCHHHHHHHH-----HhhhCCC--hhhEEEEECCeECCCcCcHHHCCCC----CCC
Confidence 678999999999865 578999999999999999 7788999 9999999999999999999999999 999
Q ss_pred eeEEEEEEccC
Q 033457 85 VTTMHVVIQPL 95 (119)
Q Consensus 85 ~~~vhlv~~~~ 95 (119)
+|||+++.+
T Consensus 83 --~i~l~~rlr 91 (91)
T 3v6c_B 83 --TLHLVLRLR 91 (91)
T ss_dssp --EEEEECCCC
T ss_pred --EEEEEEecC
Confidence 999998753
No 14
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=107.66 Aligned_cols=79 Identities=28% Similarity=0.540 Sum_probs=71.0
Q ss_pred CCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCC
Q 033457 3 EGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLP 82 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~ 82 (119)
.+.+.++|+++..+|+. ..+.+++++||++||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +
T Consensus 3 ~~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~LK~~i-----~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~----~ 70 (81)
T 2dzi_A 3 SGSSGMQLTVKALQGRE-CSLQVPEDELVSTLKQLV-----SEKLNVP--VRQQRLLFKGKALADGKRLSDYSIG----P 70 (81)
T ss_dssp CSSSSEEEEEEETTSCE-EEEEECSSCBHHHHHHHH-----HHHTCCC--TTTCEEEETTEECCTTSBGGGGTCC----S
T ss_pred CCCCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCcC--HHHEEEEECCeECCCCCcHHHcCCC----C
Confidence 45678999999988864 578999999999999999 7778899 9999999999999999999999999 9
Q ss_pred CCeeEEEEEEccC
Q 033457 83 SGVTTMHVVIQPL 95 (119)
Q Consensus 83 ~~~~~vhlv~~~~ 95 (119)
|+ +||++++++
T Consensus 71 g~--~i~l~~~~~ 81 (81)
T 2dzi_A 71 NS--KLNLVVKPL 81 (81)
T ss_dssp SB--CCEEECCCC
T ss_pred CC--EEEEEEeCC
Confidence 99 899988764
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=2.7e-18 Score=115.35 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=69.0
Q ss_pred CCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCC
Q 033457 3 EGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLP 82 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~ 82 (119)
++++.+.|.++...|+. ..+++++++||.+||++| ++.+++| +++|||||+||+|+|+.+|++|+|. +
T Consensus 24 ~~~~mm~I~VKtl~Gk~-i~lev~p~dTV~~lK~~I-----a~k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~----~ 91 (100)
T 1uh6_A 24 GAATMIEVVCNDRLGKK-VRVKCNTDDTIGDLKKLI-----AAQTGTR--WNKIVLKKWYTIFKDHVSLGDYEIH----D 91 (100)
T ss_dssp SCCCEEEEEEECSSSSC-EEEEEETTSBHHHHHHHH-----HHHHCCC--GGGCEEEETTEECCSSCBHHHHTCC----T
T ss_pred CCCCeEEEEEECCCCCE-EEEEeCCCCcHHHHHHHH-----HHHhCCC--HHHEEEEECCEECCCCCCHHHcCCC----C
Confidence 34777999999988864 578999999999999999 8889999 9999999999999999999999999 9
Q ss_pred CCeeEEEEEE
Q 033457 83 SGVTTMHVVI 92 (119)
Q Consensus 83 ~~~~~vhlv~ 92 (119)
++ +|||+-
T Consensus 92 gs--tlhL~~ 99 (100)
T 1uh6_A 92 GM--NLELYY 99 (100)
T ss_dssp TE--EEEEEC
T ss_pred CC--EEEEEe
Confidence 88 899863
No 16
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.74 E-value=1.1e-17 Score=108.45 Aligned_cols=80 Identities=16% Similarity=0.318 Sum_probs=70.1
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
...++|+++..+|+. ..+.+++++||.+||++| ++..++| +++|||+|+|+.|+|+.+|++|+|+ ++
T Consensus 3 ~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i-----~~~~gip--~~~qrLi~~Gk~L~d~~tL~~~~i~-----g~ 69 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHI-----AASVSIP--SEKQRLIYQGRVLQDDKKLQEYNVG-----GK 69 (90)
T ss_dssp CCEEEEEEEETTCCE-EEEEEETTCBHHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTSBGGGGTCT-----TE
T ss_pred CcEEEEEEEcCCCCE-EEEEECCCCCHHHHHHHH-----HHHhCCC--HHHEEEEECCeECCCCCCHHHcCCC-----Cc
Confidence 578999999999865 478999999999999999 7778899 9999999999999999999999995 57
Q ss_pred eeEEEEEEccCcccc
Q 033457 85 VTTMHVVIQPLVAKK 99 (119)
Q Consensus 85 ~~~vhlv~~~~~~~~ 99 (119)
+|||+++.+.+..
T Consensus 70 --~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 70 --VIHLVERAPPQTH 82 (90)
T ss_dssp --EEEEEECCCC---
T ss_pred --EEEEEecCCCCCC
Confidence 9999999776643
No 17
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.74 E-value=8.8e-18 Score=108.53 Aligned_cols=76 Identities=18% Similarity=0.361 Sum_probs=67.2
Q ss_pred CCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCC
Q 033457 3 EGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLP 82 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~ 82 (119)
+..+.++|+++..+|+. ..+.+++++||++||++| ++..++| +++|||+|+|+.|+|+.+|++|+|+
T Consensus 13 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i-----~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~----- 79 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHI-----AASVSIP--SEKQRLIYQGRVLQDDKKLQEYNVG----- 79 (88)
T ss_dssp --CCEEEEEEEETTSCE-EEEEEETTCBHHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTSBGGGGTCT-----
T ss_pred cCCCeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHH-----HHHhCCC--HHHEEEEECCEECCCCCcHHHcCCC-----
Confidence 34577999999998865 478999999999999999 7778999 9999999999999999999999995
Q ss_pred CCeeEEEEEEc
Q 033457 83 SGVTTMHVVIQ 93 (119)
Q Consensus 83 ~~~~~vhlv~~ 93 (119)
|+ +|||++|
T Consensus 80 g~--~i~lv~R 88 (88)
T 4eew_A 80 GK--VIHLVER 88 (88)
T ss_dssp TE--EEEEEEC
T ss_pred Cc--EEEEEEC
Confidence 57 9999875
No 18
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=5.1e-18 Score=113.99 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=64.2
Q ss_pred EEEEEEeCC----CceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 8 VELKFRIYD----GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 8 i~ik~~~~~----g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
..|++++++ + ...++++++++||.+||++| ++.+++| +++|||||+||+|+|+.||++|+|. ++
T Consensus 16 ati~V~~~~~~~~~-~~~~lev~~~~TV~~lK~kI-----~~k~gip--~~qQrLI~~GKiL~D~~TL~~y~I~----~g 83 (100)
T 1wju_A 16 ATIEVFLPPRLKKD-RKNLLETRLHITGRELRSKI-----AETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVA----HN 83 (100)
T ss_dssp EEEEEECCTTTCCS-SSEEEEEESSSBHHHHHHHH-----HHHTTCC--STTCEEEETTEECCTTSBHHHHTCC----SS
T ss_pred EEEEEEecCCCCCC-cEEEEEeCCcCHHHHHHHHH-----HHHHCcC--HHHeEEEeCCeECCCCCcHHHcCCC----CC
Confidence 345566676 5 34589999999999999999 8889999 9999999999999999999999999 99
Q ss_pred CeeEEEEEEccCccc
Q 033457 84 GVTTMHVVIQPLVAK 98 (119)
Q Consensus 84 ~~~~vhlv~~~~~~~ 98 (119)
+ +| ++++.++..
T Consensus 84 s--ti-~vl~lrg~~ 95 (100)
T 1wju_A 84 V--KA-MVLELKQSS 95 (100)
T ss_dssp E--EE-EEECCCCCC
T ss_pred C--EE-EEEEECCCC
Confidence 9 77 555555543
No 19
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.1e-18 Score=111.96 Aligned_cols=80 Identities=29% Similarity=0.380 Sum_probs=70.9
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
+++.++|+|+..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. ++
T Consensus 19 ~~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~----~g 86 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKT-ITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KE 86 (98)
T ss_dssp ---CCEEEEEETTCCE-EEEECCTTCBHHHHHHHH-----HHHHCCC--GGGCEEEETTEECCTTCBSGGGTCC----TT
T ss_pred CCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHhCCC--hhHEEEEECCEECCCCCcHHHCCCC----CC
Confidence 3678999999999865 478999999999999999 7778899 9999999999999999999999999 99
Q ss_pred CeeEEEEEEccCcc
Q 033457 84 GVTTMHVVIQPLVA 97 (119)
Q Consensus 84 ~~~~vhlv~~~~~~ 97 (119)
+ +|||+++.+++
T Consensus 87 ~--~i~l~~rl~GG 98 (98)
T 4hcn_B 87 S--TLHLVLRLRGG 98 (98)
T ss_dssp E--EEEEECBCSCC
T ss_pred C--EEEEEEecCCC
Confidence 9 99999987753
No 20
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.1e-17 Score=106.66 Aligned_cols=79 Identities=25% Similarity=0.340 Sum_probs=71.2
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
++++|+++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i-----~~~~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~----~~~- 68 (85)
T 3mtn_B 2 SHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KWS- 68 (85)
T ss_dssp -CEEEEEECTTSCE-EEEEECTTCBHHHHHHHH-----HHHHCCC--GGGCEEEETTEECCTTSBTGGGTCC----TTC-
T ss_pred CeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHH-----HHHHCcC--hHHEEEEECCEECCCCCCHHHcCCC----CCC-
Confidence 57899999999865 578999999999999999 7778899 9999999999999999999999999 999
Q ss_pred eEEEEEEccCccc
Q 033457 86 TTMHVVIQPLVAK 98 (119)
Q Consensus 86 ~~vhlv~~~~~~~ 98 (119)
++||+++.+++.
T Consensus 69 -~l~l~~r~~GG~ 80 (85)
T 3mtn_B 69 -TLFLLLRLRGGG 80 (85)
T ss_dssp -EEEEECCCCCC-
T ss_pred -EEEEEEECcCCC
Confidence 999999988763
No 21
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.73 E-value=2e-17 Score=105.83 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=66.8
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCc---cCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCC
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGK---TITPKSINDVKLIHAGKILENDRTLADSRITVGDLP 82 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~---~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~ 82 (119)
..++|+++..+|+. ..+++++++||.+||++| +.. +++| +++|||+|+|+.|+|+.+|++|+|. +
T Consensus 4 ~~m~i~vk~~~g~~-~~~~v~~~~TV~~lK~~i-----~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~----~ 71 (85)
T 2wyq_A 4 MAVTITLKTLQQQT-FKIRMEPDETVKVLKEKI-----EAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRID----E 71 (85)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHH-----HHHHCTTTCC--GGGEEEEETTEECCTTSBGGGGCCC----T
T ss_pred ceEEEEEEECCCCE-EEEEECCCCCHHHHHHHH-----HhhccccCCC--HHHeEEEECCEECcCCCCHHHcCCC----C
Confidence 35889999998864 478999999999999999 554 6799 9999999999999999999999999 9
Q ss_pred CCeeEEEEEEccCc
Q 033457 83 SGVTTMHVVIQPLV 96 (119)
Q Consensus 83 ~~~~~vhlv~~~~~ 96 (119)
++ +|||+.+++.
T Consensus 72 g~--~i~l~~~~~~ 83 (85)
T 2wyq_A 72 KN--FVVVMVTKTK 83 (85)
T ss_dssp TS--EEEEEEC---
T ss_pred CC--EEEEEEcCCC
Confidence 99 9999987654
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=8.7e-18 Score=107.22 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=68.7
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
++++|+++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i-----~~~~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~----~~~- 68 (85)
T 3n3k_B 2 SHMRIVVKTLMGRT-IILEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIH----NHS- 68 (85)
T ss_dssp --CEEEEECGGGCE-EEEECCTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETBEECCTTCBTTTTTCC----TTC-
T ss_pred CeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCCC--HHHEEEEECCeECCCCCCHHHCCCC----CCC-
Confidence 46889999888864 578999999999999999 7778899 9999999999999999999999999 999
Q ss_pred eEEEEEEccCccc
Q 033457 86 TTMHVVIQPLVAK 98 (119)
Q Consensus 86 ~~vhlv~~~~~~~ 98 (119)
+|||+++.+++.
T Consensus 69 -~i~l~~rl~GG~ 80 (85)
T 3n3k_B 69 -ALYLLLKLRGGG 80 (85)
T ss_dssp -EEEEEECCC---
T ss_pred -EEEEEEeccCCC
Confidence 999999988764
No 23
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.5e-17 Score=107.01 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=73.4
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
+...++|+++..+|+ ...+++++++||.+||++| ++..++| +++|||+|.|+.|+|+.+|++|+|. ++
T Consensus 4 ~~~~m~i~Vk~~~g~-~~~~~v~~~~tV~~lK~~i-----~~~~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~----~g 71 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGG-SYAYAINPNSFILGLKQQI-----EDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQ----DS 71 (87)
T ss_dssp CSSSEEEEEEETTTE-EEEEEECSSSBHHHHHHHH-----HHHTCCC--TTTEEEEETTEECCSSSBHHHHTCC----TT
T ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCChHHHHHHHH-----HHHhCCC--hHHEEEEECCEEccCCCCHHHCCCC----CC
Confidence 467899999999885 4578999999999999999 7778899 9999999999999999999999999 89
Q ss_pred CeeEEEEEEccCccc
Q 033457 84 GVTTMHVVIQPLVAK 98 (119)
Q Consensus 84 ~~~~vhlv~~~~~~~ 98 (119)
+ +|||+++..++.
T Consensus 72 ~--~i~l~~~~~GG~ 84 (87)
T 1wh3_A 72 D--TLILSKKKGSGP 84 (87)
T ss_dssp E--EEEEEECSCCCS
T ss_pred C--EEEEEEeccCCC
Confidence 9 999999988764
No 24
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=1.4e-17 Score=109.89 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=71.0
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCC-CCcccCCccccCCCCC
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEND-RTLADSRITVGDLPSG 84 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~-~tL~~~~i~~~~~~~~ 84 (119)
..++|.++..+| ...+++++++||.+||++| ++.+++| +++|||+|.||.|+|+ .+|++|+|. +++
T Consensus 14 ~~~~I~Vk~~~~--~~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~----~gs 80 (94)
T 2kan_A 14 RKIHVTVKFPSK--QFTVEVDRTETVSSLKDKI-----HIVENTP--IKRMQLYYSGIELADDYRNLNEYGIT----EFS 80 (94)
T ss_dssp CCEEEEEECSSC--EEEEEECTTCBHHHHHHHH-----HHHSSSC--TTTEEEEETTEEECCTTSBHHHHTCC----TTE
T ss_pred CCEEEEEEcCCc--EEEEEECCCCcHHHHHHHH-----HHHHCcC--HHHEEEEECCEECCCCcccHHHCCCC----CCC
Confidence 468899998887 4578999999999999999 7788999 9999999999999999 999999999 999
Q ss_pred eeEEEEEEccCccc
Q 033457 85 VTTMHVVIQPLVAK 98 (119)
Q Consensus 85 ~~~vhlv~~~~~~~ 98 (119)
+|||+++.+++.
T Consensus 81 --tl~lv~r~~gg~ 92 (94)
T 2kan_A 81 --EIVVFLKSINRA 92 (94)
T ss_dssp --EEEEEECCCSSC
T ss_pred --EEEEEEeCCCCC
Confidence 999999988764
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.72 E-value=1.9e-17 Score=103.18 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=67.3
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|+++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++ +
T Consensus 1 M~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i-----~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~----~g~--~ 66 (76)
T 1ndd_A 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERV-----EEKEGIP--PQQQRLIYSGKQMNDEKTAADYKIL----GGS--V 66 (76)
T ss_dssp CEEEEECTTSCE-EEEECCTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTSBGGGGTCC----TTC--E
T ss_pred CEEEEECCCCCE-EEEEECCCChHHHHHHHH-----HHHHCcC--hHHEEEEECCEECCCCCcHHHcCCC----CCC--E
Confidence 368888888864 478999999999999999 7778899 9999999999999999999999999 999 9
Q ss_pred EEEEEccCcc
Q 033457 88 MHVVIQPLVA 97 (119)
Q Consensus 88 vhlv~~~~~~ 97 (119)
+|++++.+++
T Consensus 67 i~l~~~~~GG 76 (76)
T 1ndd_A 67 LHLVLALRGG 76 (76)
T ss_dssp EEEEECCC--
T ss_pred EEEEEeCCCC
Confidence 9999987653
No 26
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=108.74 Aligned_cols=78 Identities=23% Similarity=0.193 Sum_probs=68.1
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCee
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
.++|+++..+|+. ..+.+++++||.+||++| ++..++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 4 ~m~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I-----~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~----~g~-- 69 (88)
T 2hj8_A 4 PLSILVRNNKGRS-STYEVRLTQTVAHLKQQV-----SGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLK----PLS-- 69 (88)
T ss_dssp EEEEEEEETTSCE-EEEEEESSSBHHHHHHHH-----HHHTCSC--TTTEEEESSSSCCCTTSBHHHHHCS----TTC--
T ss_pred cEEEEEECCCCCE-EEEEECCCCcHHHHHHHH-----HHHhCCC--hhHEEEEECCEECCCCCcHHHcCCC----CCC--
Confidence 6899999998854 578999999999999999 7788999 9999999999999999999999999 999
Q ss_pred EEEEEEccCccc
Q 033457 87 TMHVVIQPLVAK 98 (119)
Q Consensus 87 ~vhlv~~~~~~~ 98 (119)
+|||+.+.+++.
T Consensus 70 ~i~l~~~~~gg~ 81 (88)
T 2hj8_A 70 TVFMNLRLRGGL 81 (88)
T ss_dssp EEEEEEC-----
T ss_pred EEEEEEEcCCCc
Confidence 999999887663
No 27
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.72 E-value=2.1e-17 Score=108.18 Aligned_cols=80 Identities=28% Similarity=0.371 Sum_probs=69.5
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|+|+..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++ +
T Consensus 2 m~i~vk~~~g~~-~~~~v~~~~TV~~LK~~i-----~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~----~~~--~ 67 (96)
T 3k9o_B 2 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES--T 67 (96)
T ss_dssp CEEEEEETTCCE-EEEECCTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTSBTGGGTCC----TTC--E
T ss_pred cEEEEEeCCCCE-EEEEECCCCCHHHHHHHH-----HhhhCCC--hhHEEEEECCEECCCCCcHHHcCCC----CCC--E
Confidence 578899888865 478999999999999999 7778999 9999999999999999999999999 999 9
Q ss_pred EEEEEccCcccccc
Q 033457 88 MHVVIQPLVAKKKT 101 (119)
Q Consensus 88 vhlv~~~~~~~~~~ 101 (119)
|||+++.+++.+..
T Consensus 68 i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 68 LHLVLRLRGYADLR 81 (96)
T ss_dssp EEEEECCCC-----
T ss_pred EEEEEEcCCCCccc
Confidence 99999998875533
No 28
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.71 E-value=1.3e-17 Score=107.96 Aligned_cols=75 Identities=17% Similarity=0.331 Sum_probs=68.7
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEccee-eCCCCCcccCCccccCCCCC
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKI-LENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~-L~D~~tL~~~~i~~~~~~~~ 84 (119)
+-+.|.++..+|+. ..+++++++||++||++| ++..++| +++|||+|+|+. |+|+.+|++|+|. +++
T Consensus 9 ~~~~i~vk~l~g~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~----~gs 76 (84)
T 2kk8_A 9 SHMKFLVENLNGSS-FELEVDYRDTLLVVKQKI-----ERSQHIP--VSKQTLIVDGIVILREDLTVEQCQIV----PTS 76 (84)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHH-----HHHHTCC--GGGEEEEETTEECCCSSSBHHHHTCC----TTS
T ss_pred CceEEEEEecCCcE-EEEEECCCChHHHHHHHH-----HHHHCcC--hHHEEEEECCEEecCCcCCHHHcCCC----CCC
Confidence 46789999999965 478999999999999999 8788999 999999999999 9999999999999 999
Q ss_pred eeEEEEEEcc
Q 033457 85 VTTMHVVIQP 94 (119)
Q Consensus 85 ~~~vhlv~~~ 94 (119)
++||+++|
T Consensus 77 --~i~lv~~p 84 (84)
T 2kk8_A 77 --DIQLEVSS 84 (84)
T ss_dssp --CEEEEECC
T ss_pred --EEEEEEcC
Confidence 89998875
No 29
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.71 E-value=1.6e-17 Score=110.01 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=71.4
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
..++|+++..+|+. ..+.+++++||..||++| ++..++| +++|||||.|+.|+|+.+|++|+|. +++
T Consensus 20 ~~m~I~Vk~~~g~~-~~l~v~~~~tv~~lK~~i-----~~~~gip--~~~qrLif~Gk~L~d~~tl~dy~i~----~g~- 86 (97)
T 1wyw_B 20 EYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESY-----CQRQGVP--MNSLRFLFEGQRIADNHTPKELGME----EED- 86 (97)
T ss_dssp CEEEEEEECTTCCE-EEEEEETTSCTHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTCCHHHHTCC----TTC-
T ss_pred CcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCCC--hhhEEEEECCeEcCCCCCHHHCCCC----CCC-
Confidence 45999999999965 478999999999999999 8888999 9999999999999999999999999 999
Q ss_pred eEEEEEEccCcc
Q 033457 86 TTMHVVIQPLVA 97 (119)
Q Consensus 86 ~~vhlv~~~~~~ 97 (119)
+|||+++..++
T Consensus 87 -~I~l~~~~~GG 97 (97)
T 1wyw_B 87 -VIEVYQEQTGG 97 (97)
T ss_dssp -EEEEEESSSCC
T ss_pred -EEEEEEecCCC
Confidence 99999987653
No 30
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.71 E-value=3.5e-17 Score=101.90 Aligned_cols=76 Identities=29% Similarity=0.410 Sum_probs=68.2
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|+++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++ +
T Consensus 1 M~i~vk~~~g~~-~~i~v~~~~tv~~lK~~i-----~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~----~g~--~ 66 (76)
T 3a9j_A 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----RES--T 66 (76)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTCBTGGGTCC----TTC--E
T ss_pred CEEEEEcCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCcC--HHHeEEEECCeECCCCCcHHHcCCC----CCC--E
Confidence 368888888864 578999999999999999 7778899 9999999999999999999999999 999 9
Q ss_pred EEEEEccCcc
Q 033457 88 MHVVIQPLVA 97 (119)
Q Consensus 88 vhlv~~~~~~ 97 (119)
+|++++.+++
T Consensus 67 i~l~~~~~GG 76 (76)
T 3a9j_A 67 LHLVLRLRGG 76 (76)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEeCCCC
Confidence 9999987753
No 31
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.8e-17 Score=111.53 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=66.5
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|+|+..+|+. ..+.+++++||.+||++| +...++| +++|||||+|+.|+|+.+|++|+|. +|+ +
T Consensus 2 m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~----~g~--~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEK-VPLDLEPSNTILETKTKL-----AQSISCE--ESQIKLIYSGKVLQDSKTVSECGLK----DGD--Q 67 (106)
T ss_dssp -CEEEECTTCCE-EEECCCTTSBHHHHHHHH-----HHTTTSC--GGGCEEEETTEECCTTSBTTTTTCC----TTC--E
T ss_pred EEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCCC--hhhEEEEECCEECCCcCCHHHcCCC----CCC--E
Confidence 578888888865 578999999999999999 7778899 9999999999999999999999999 999 9
Q ss_pred EEEEEccCcc
Q 033457 88 MHVVIQPLVA 97 (119)
Q Consensus 88 vhlv~~~~~~ 97 (119)
|||+++.+.+
T Consensus 68 i~lv~~~~~~ 77 (106)
T 3m62_B 68 VVFMVSQKKS 77 (106)
T ss_dssp EEEECCC---
T ss_pred EEEEEcCCCC
Confidence 9999986654
No 32
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.8e-17 Score=109.60 Aligned_cols=81 Identities=20% Similarity=0.275 Sum_probs=72.7
Q ss_pred CCCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCC
Q 033457 2 GEGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDL 81 (119)
Q Consensus 2 ~~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~ 81 (119)
....+.++|+++..+|+ ..+++++++||.+||++| ++..++| +++|||+|.|+.|+|+.+|++|+|.
T Consensus 17 ~~~~~~m~I~Vk~~~g~--~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~---- 83 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK--EDFSVTDTCTIQQLKEEI-----SQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVR---- 83 (100)
T ss_dssp SCCTTEEEEEEECSSCE--EEEEEETTCBHHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTSBHHHHTCC----
T ss_pred CCCCCeEEEEEEcCCCc--EEEEECCCCcHHHHHHHH-----HHHHCcC--hhhEEEEECCEECCCcCcHHHCCCC----
Confidence 34567899999999884 478999999999999999 7778999 9999999999999999999999999
Q ss_pred CCCeeEEEEEEccCcc
Q 033457 82 PSGVTTMHVVIQPLVA 97 (119)
Q Consensus 82 ~~~~~~vhlv~~~~~~ 97 (119)
+++ +|||+++.+++
T Consensus 84 ~gs--tI~l~~r~~~~ 97 (100)
T 1yqb_A 84 DGL--TVHLVIKRQHR 97 (100)
T ss_dssp TTC--EEEEEECCCCS
T ss_pred CCC--EEEEEEcCCCC
Confidence 999 99999987654
No 33
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=5.2e-17 Score=106.91 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=68.3
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCc---cCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGK---TITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~---~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
++|+++..+|+. ..+.+++++||.+||++| +.. +++| +++|||+|+|+.|+|+.+|++|+|. +|+
T Consensus 1 M~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I-----~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~----~g~ 68 (95)
T 1uel_A 1 MQVTLKTLQQQT-FKIDIDPEETVKALKEKI-----ESEKGKDAFP--VAGQKLIYAGKILNDDTALKEYKID----EKN 68 (95)
T ss_dssp CEEEEEETTCCE-EEEECCTTSBHHHHHHHH-----HHHHCTTTCC--TTTEEEEETTEECCTTSBGGGGTCC----SSS
T ss_pred CEEEEEeCCCCE-EEEEECCCCHHHHHHHHH-----HhhcccCCCC--hhhEEEEECCEECCCcCcHHHCCCC----CCC
Confidence 368888888864 478999999999999999 555 6799 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCcccc
Q 033457 85 VTTMHVVIQPLVAKK 99 (119)
Q Consensus 85 ~~~vhlv~~~~~~~~ 99 (119)
+|||+++.+.+..
T Consensus 69 --~i~l~~~~~~~~~ 81 (95)
T 1uel_A 69 --FVVVMVTKPKAVS 81 (95)
T ss_dssp --EEEEEESSCCCCC
T ss_pred --EEEEEEeCCCCCC
Confidence 9999998765543
No 34
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.71 E-value=4.6e-17 Score=110.30 Aligned_cols=79 Identities=28% Similarity=0.375 Sum_probs=71.3
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
...++|+++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 33 ~~~m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~----~gs 100 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES 100 (111)
T ss_dssp GGCEEEEEECSSSCE-EEEEECTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTSBTTTTTCC----TTC
T ss_pred CccEEEEEEeCCCCE-EEEEeCCCCCHHHHHHHH-----HHHhCCC--hHHEEEEECCEECCCCCcHHHCCCC----CCC
Confidence 357999999998865 578999999999999999 7778899 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCcc
Q 033457 85 VTTMHVVIQPLVA 97 (119)
Q Consensus 85 ~~~vhlv~~~~~~ 97 (119)
+|||+++.+++
T Consensus 101 --~I~l~~rl~GG 111 (111)
T 3vdz_A 101 --TLHLVLRLRGG 111 (111)
T ss_dssp --EEEEEECCCC-
T ss_pred --EEEEEEecCCC
Confidence 99999998753
No 35
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.1e-17 Score=112.97 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=70.4
Q ss_pred CCCCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccC
Q 033457 1 MGEGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGD 80 (119)
Q Consensus 1 ~~~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~ 80 (119)
|.+++..++|+|+.. |+. ..+.+++++||.+||++| +...++| +++|||||.|+.|+|+.+|++|+|.
T Consensus 26 ~~~~~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~--- 93 (125)
T 1j8c_A 26 APAEPKIIKVTVKTP-KEK-EEFAVPENSSVQQFKEAI-----SKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIH--- 93 (125)
T ss_dssp CCCCCCCEEEEEECS-SCE-EEEEECTTCCHHHHHHHH-----HHHHCSC--SSSEEEEETTEEESTTSCGGGTTCS---
T ss_pred ccCCCCcEEEEEEeC-CeE-EEEEECCCCcHHHHHHHH-----HHHHCcC--cceEEEEECCEEcCCCCCHHHcCCC---
Confidence 445577899999988 654 578999999999999999 7778899 9999999999999999999999999
Q ss_pred CCCCeeEEEEEEccCccc
Q 033457 81 LPSGVTTMHVVIQPLVAK 98 (119)
Q Consensus 81 ~~~~~~~vhlv~~~~~~~ 98 (119)
+++ +|||+.+.+++.
T Consensus 94 -~gs--tI~lv~~~~gg~ 108 (125)
T 1j8c_A 94 -DGL--TVHLVIKRDPNS 108 (125)
T ss_dssp -SSE--EEEEEEC-----
T ss_pred -CCC--EEEEEeccCCCC
Confidence 888 999999987663
No 36
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.70 E-value=8.6e-17 Score=107.41 Aligned_cols=78 Identities=26% Similarity=0.489 Sum_probs=66.4
Q ss_pred ceeEEEEEEeCCCceeEEE--eecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCc-cccCC
Q 033457 5 EECVELKFRIYDGTDICHG--TYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRI-TVGDL 81 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~--~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i-~~~~~ 81 (119)
++++.|.|+..+|+. ..+ .+++++||++||++|..+ ..++| +++|||||+|++|+|+.+|++|+| .
T Consensus 17 ~~~m~I~VKtl~g~~-~~i~v~v~~~~TV~~lK~~I~~~----~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~---- 85 (98)
T 4a20_A 17 NAAVHLTLKKIQAPK-FSIEHDFSPSDTILQIKQHLISE----EKASH--ISEIKLLLKGKVLHDNLFLSDLKVTP---- 85 (98)
T ss_dssp -CCEEEEEEECSSSC-EEEEEEECTTCBHHHHHHHHHHT----TSCSC--GGGEEEEETTEEECTTCBGGGSCCBT----
T ss_pred CCCEEEEEEcCCCCE-EEEEEecCCCChHHHHHHHHHHH----hcCCC--hhhEEEEECCEECcCcCCHHHcCcCC----
Confidence 678999999999864 345 556999999999999443 23688 999999999999999999999999 8
Q ss_pred CCCeeEEEEEEccC
Q 033457 82 PSGVTTMHVVIQPL 95 (119)
Q Consensus 82 ~~~~~~vhlv~~~~ 95 (119)
+++ +|||++..|
T Consensus 86 ~g~--ti~lmvskp 97 (98)
T 4a20_A 86 ANS--TITVMIKPN 97 (98)
T ss_dssp TBC--EEEEEECCC
T ss_pred CCC--EEEEEEeCC
Confidence 899 999998765
No 37
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=1.2e-16 Score=104.84 Aligned_cols=80 Identities=25% Similarity=0.350 Sum_probs=69.7
Q ss_pred CCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCC-CCcccCCccccCC
Q 033457 3 EGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEND-RTLADSRITVGDL 81 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~-~tL~~~~i~~~~~ 81 (119)
.+++.++|+++..+|+. ..+.+++++||.+||++| +... +++|||||.|+.|+|+ .+|++|+|.
T Consensus 3 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i-----~~~~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~---- 67 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKY-----FPGQ-----ESQMKLIYQGRLLQDPARTLSSLNIT---- 67 (95)
T ss_dssp CCCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHH-----SSST-----TTTCEEEETTEECCCSSCBTTTTTCC----
T ss_pred CCCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HhhC-----cCcEEEEECCEEccCCcCCHHHcCCC----
Confidence 35788999999988864 578999999999999999 5544 5899999999999999 999999999
Q ss_pred CCCeeEEEEEEccCcccc
Q 033457 82 PSGVTTMHVVIQPLVAKK 99 (119)
Q Consensus 82 ~~~~~~vhlv~~~~~~~~ 99 (119)
+++ +|||+++.+....
T Consensus 68 ~g~--~i~l~~~~~~~~~ 83 (95)
T 1wia_A 68 NNC--VIHCHRSPPGAAV 83 (95)
T ss_dssp TTE--EEEEECCCCCCCC
T ss_pred CCC--EEEEEECCCCCCC
Confidence 999 9999998776543
No 38
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=111.99 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=62.2
Q ss_pred ceeEEEEEEeCCCce-eEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccC--CccccCC
Q 033457 5 EECVELKFRIYDGTD-ICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADS--RITVGDL 81 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~-~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~--~i~~~~~ 81 (119)
+..+.|+|+..+|+. ...+++++++||++||++|..+| ++.| .+++|||||+||+|+|+.+|++| +|.
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~----~g~p-p~~~QrLIy~Gk~L~D~~tL~~y~~~I~---- 91 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVY----PSKP-LTKDQRLVYSGRLLPDHLQLKDILRKQD---- 91 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHS----TTCC-CTTTCCEEETTEEECTTSBTHHHHTTTC----
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHh----cCCC-ChhhEEEEECCEECCCCCCHHHHhcCCC----
Confidence 567999999998862 23678899999999999994443 2344 15999999999999999999999 999
Q ss_pred CCCeeEEEEE
Q 033457 82 PSGVTTMHVV 91 (119)
Q Consensus 82 ~~~~~~vhlv 91 (119)
+++ +||||
T Consensus 92 ~~~--tihLv 99 (99)
T 2kdb_A 92 EYH--MVHLV 99 (99)
T ss_dssp SEE--EEEEC
T ss_pred CCC--EEEeC
Confidence 888 99985
No 39
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.70 E-value=1.4e-18 Score=124.34 Aligned_cols=89 Identities=28% Similarity=0.356 Sum_probs=4.0
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|.|+..+|+. ..+.+++++||.+||++| ++..++| +++|||+|+|+.|+|+.+|++|+|. +++ +
T Consensus 1 MqI~VK~l~G~~-~~l~V~~~~TV~~LK~~I-----~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~----~gs--t 66 (152)
T 3u5c_f 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES--T 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHH-----HHHhCCC--HHHEEEEECCEEccccCcHHHcCCC----CCC--E
Confidence 467788888864 578999999999999999 8888999 9999999999999999999999999 999 9
Q ss_pred EEEEEccCccccccchhhhcccC
Q 033457 88 MHVVIQPLVAKKKTEKTKEEMQK 110 (119)
Q Consensus 88 vhlv~~~~~~~~~~~~~~~~~~~ 110 (119)
|||+++.+++.++..|+.+.+|+
T Consensus 67 L~Lvlrl~GGgKkrkKk~~t~Pk 89 (152)
T 3u5c_f 67 LHLVLRLRGGGKKRKXXXXXXXX 89 (152)
T ss_dssp ---------------CCCCCCCS
T ss_pred EEEEeeccCCCcCcccccccccc
Confidence 99999999997666555554444
No 40
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.69 E-value=1.2e-16 Score=100.15 Aligned_cols=72 Identities=22% Similarity=0.371 Sum_probs=65.3
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|+++. +|+ ...+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +|+ +
T Consensus 5 m~i~vk~-~g~-~~~~~v~~~~tV~~LK~~i-----~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~----~g~--~ 69 (77)
T 2bwf_A 5 LNIHIKS-GQD-KWEVNVAPESTVLQFKEAI-----NKANGIP--VANQRLIYSGKILKDDQTVESYHIQ----DGH--S 69 (77)
T ss_dssp EEEEEEE-TTE-EEEEEECTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTSBTGGGTCC----TTC--E
T ss_pred EEEEEEE-CCE-EEEEEECCCCcHHHHHHHH-----HHHhCCC--HHHEEEEECCeEcCCCCCHHHcCCC----CCC--E
Confidence 7888888 775 4578999999999999999 7778999 9999999999999999999999999 999 9
Q ss_pred EEEEEcc
Q 033457 88 MHVVIQP 94 (119)
Q Consensus 88 vhlv~~~ 94 (119)
+|++.++
T Consensus 70 i~l~~~~ 76 (77)
T 2bwf_A 70 VHLVKSQ 76 (77)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9998764
No 41
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.69 E-value=7.4e-17 Score=109.70 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=72.1
Q ss_pred eeEEEEEEeCC----------CceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCC
Q 033457 6 ECVELKFRIYD----------GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSR 75 (119)
Q Consensus 6 ~~i~ik~~~~~----------g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~ 75 (119)
..|+|+++.++ | ....+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G-~~~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~ 95 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNG-QGLVFTLPLTDQVSVIKVKI-----HEATGMP--AGKQKLQYEGIFIKDSNSLAYYN 95 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSS-EEEEEEECSCSBTHHHHHHH-----HHHSSCC--TTTEEEEETTEEECTTSBHHHHT
T ss_pred CCEEEEEEcCCCccccccccCC-eEEEEEECCCCCHHHHHHHH-----HHHHCCC--hHHEEEEECCEECCCCCCHHHCC
Confidence 47899999985 4 35678999999999999999 7788999 99999999999999999999999
Q ss_pred ccccCCCCCeeEEEEEEccCcccc
Q 033457 76 ITVGDLPSGVTTMHVVIQPLVAKK 99 (119)
Q Consensus 76 i~~~~~~~~~~~vhlv~~~~~~~~ 99 (119)
|. +++ +|||+++.+++.+
T Consensus 96 i~----~g~--~i~lv~rl~GGk~ 113 (115)
T 1we7_A 96 MA----SGA--VIHLALKERSGPS 113 (115)
T ss_dssp CC----SSC--EEEEEECCCSCCS
T ss_pred CC----CCC--EEEEEEEcCCCCC
Confidence 99 999 9999999988754
No 42
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.69 E-value=4e-17 Score=112.47 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=62.2
Q ss_pred EEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCC-C--CCeeEE
Q 033457 12 FRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDL-P--SGVTTM 88 (119)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~-~--~~~~~v 88 (119)
|++..++.+..+.+++++||.+||++| ++.+++| +++|||||+||+|+|++||++|+|.-+.+ + ++ +|
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI-----~~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~a--tl 75 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIV-----EGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPA--TV 75 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCE--EE
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHH-----HHHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCC--EE
Confidence 333444455678999999999999999 8899999 99999999999999999999999992111 1 66 99
Q ss_pred EEEEccC
Q 033457 89 HVVIQPL 95 (119)
Q Consensus 89 hlv~~~~ 95 (119)
||++|..
T Consensus 76 ~Lvlr~~ 82 (118)
T 4ajy_B 76 GLAFRAD 82 (118)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9999963
No 43
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.4e-17 Score=108.23 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=71.6
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.++|+++.. |+ ...+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 15 ~~~m~i~Vk~~-g~-~~~~~v~~~~TV~~LK~~I-----~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~----~g~ 81 (96)
T 1wx8_A 15 SRIIRVSVKTP-QD-CHEFFLAENSNVRRFKKQI-----SKYLHCN--ADRLVLIFTGKILRDQDILSQRGIL----DGS 81 (96)
T ss_dssp SCEEEEEEECS-SS-EEEEEEETTCCHHHHHHHH-----HHHTCSC--TTTBCCEETTEECCTTSCHHHHTCC----TTE
T ss_pred CCcEEEEEEEC-Ce-EEEEEECCCCCHHHHHHHH-----HHHhCCC--HHHEEEEECCEECCCcCCHHHCCCC----CCC
Confidence 57899999988 65 4578999999999999999 7778999 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCcccc
Q 033457 85 VTTMHVVIQPLVAKK 99 (119)
Q Consensus 85 ~~~vhlv~~~~~~~~ 99 (119)
+|||+++.+++..
T Consensus 82 --~i~l~~~~~~g~~ 94 (96)
T 1wx8_A 82 --TVHVVVRSHSGPS 94 (96)
T ss_dssp --EEECCBCCSSCSS
T ss_pred --EEEEEEeCCCCCC
Confidence 9999998876643
No 44
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=6.5e-17 Score=105.09 Aligned_cols=77 Identities=31% Similarity=0.427 Sum_probs=66.2
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCee
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
.+.|.++..+|+. ..+++++++||++||++| ++..++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 9 ~~~i~v~~~~G~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~----~g~-- 74 (88)
T 1sif_A 9 GLQLFIKTLTGKT-FTVEMEPSDTIENLKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES-- 74 (88)
T ss_dssp -CEEEEEETTSCE-EEEECCTTSBHHHHHHHH-----HHHHCCC--GGGCEEEETTEECCTTSBSGGGTCC----TTC--
T ss_pred ceEEEEEeCCCCE-EEEEECCCChHHHHHHHH-----HHHHCcC--hhhEEEEECCEECCCCCcHHHcCCC----CCC--
Confidence 4688999999965 578999999999999999 7788999 9999999999999999999999999 999
Q ss_pred EEEEEEccCcc
Q 033457 87 TMHVVIQPLVA 97 (119)
Q Consensus 87 ~vhlv~~~~~~ 97 (119)
+|||+++.+++
T Consensus 75 ~i~l~~r~~GG 85 (88)
T 1sif_A 75 TLHLVLRLRGG 85 (88)
T ss_dssp EEEEEC-----
T ss_pred EEEEEEeCCCC
Confidence 99999988765
No 45
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.9e-17 Score=112.03 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=72.0
Q ss_pred CCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCC-------------CCcEEEEEcceeeC-CC
Q 033457 3 EGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKS-------------INDVKLIHAGKILE-ND 68 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~-------------~~~qrLi~~Gk~L~-D~ 68 (119)
++++.+.|+|+..+|+. .++++++++||++||++| ++.+++|+. .++|||||+|+.|. |+
T Consensus 3 ~~~~~M~I~Vk~l~g~~-~~v~V~~~~TV~dLK~~I-----~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~ 76 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEV-MPVVVVQNATVLDLKKAI-----QRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDR 76 (105)
T ss_dssp CCCCSEEEEEECSSSCE-EEEEECTTCBHHHHHHHH-----HHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSS
T ss_pred CCCCcEEEEEEecCCCE-EEEEECCCChHHHHHHHH-----HHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCc
Confidence 45778999999999975 589999999999999999 666666511 15789999999996 67
Q ss_pred CCcccCCccccCCCCCeeEEEEEEccCccccc
Q 033457 69 RTLADSRITVGDLPSGVTTMHVVIQPLVAKKK 100 (119)
Q Consensus 69 ~tL~~~~i~~~~~~~~~~~vhlv~~~~~~~~~ 100 (119)
.+|++|+|. +++ +||++.+.++...+
T Consensus 77 ~tL~dygI~----~g~--~l~lv~~lr~~~~~ 102 (105)
T 1v2y_A 77 KKLRDYGIR----NRD--EVSFIKKLGQKSGP 102 (105)
T ss_dssp SBHHHHTCC----SSE--EEEEEECSCSCCCC
T ss_pred CCHHHcCCC----CCC--EEEEEehhccCCCC
Confidence 999999999 999 99999998776444
No 46
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.4e-17 Score=105.57 Aligned_cols=76 Identities=26% Similarity=0.465 Sum_probs=64.3
Q ss_pred EEEEEEeCCCceeEEEeec--CCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCc-cccCCCCC
Q 033457 8 VELKFRIYDGTDICHGTYA--SSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRI-TVGDLPSG 84 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~--~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i-~~~~~~~~ 84 (119)
+.|.|+..+|+. ..++++ +++||++||++|+++ .+++| +++|||||+||+|+|+.+|++|+| + +++
T Consensus 2 mqI~VKtl~g~~-~~i~v~v~~~~TV~~lK~~I~~~----~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~----~~s 70 (87)
T 2lxa_A 2 VHLTLKKIQAPK-FSIEHDFSPSDTILQIKQHLISE----EKASH--ISEIKLLLKGKVLHDNLFLSDLKVTP----ANS 70 (87)
T ss_dssp CEEEEEECSSSC-EECCEECCTTCBHHHHHHHHHHT----TSCSS--STTEEEEETTEECCTTCBHHHHCCCG----GGC
T ss_pred EEEEEEcCCCCE-EEEEEcCCCCCcHHHHHHHHHHH----hcCCC--hHHEEEEECCEECcCcCCHHHcCCCC----CCC
Confidence 578999999864 466655 999999999999433 34799 999999999999999999999999 6 688
Q ss_pred eeEEEEEEccCc
Q 033457 85 VTTMHVVIQPLV 96 (119)
Q Consensus 85 ~~~vhlv~~~~~ 96 (119)
++||+.++.-
T Consensus 71 --tl~v~~~~~~ 80 (87)
T 2lxa_A 71 --TITVMIKPNL 80 (87)
T ss_dssp --EEEEEECCCC
T ss_pred --EEEEEcCCCc
Confidence 9999888764
No 47
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=9.7e-17 Score=107.51 Aligned_cols=80 Identities=20% Similarity=0.283 Sum_probs=72.0
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
+...++|+|+..+|+ ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. ++
T Consensus 14 ~~~~m~I~Vk~~~g~--~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~----~g 80 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK--EDFSVTDTCTIQQLKEEI-----SQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVR----DG 80 (106)
T ss_dssp CSSEEEEEEECSSCE--EEEEEETTCCHHHHHHHH-----HHHHTCC--TTTEEEEETTEECCTTSCHHHHTCC----TT
T ss_pred CCceEEEEEEeCCCc--EEEEECCCCcHHHHHHHH-----HHHHCcC--hhhEEEEECCEECCCcCcHHHcCCC----CC
Confidence 367799999998884 478999999999999999 7778899 9999999999999999999999999 88
Q ss_pred CeeEEEEEEccCccc
Q 033457 84 GVTTMHVVIQPLVAK 98 (119)
Q Consensus 84 ~~~~vhlv~~~~~~~ 98 (119)
+ +|||+++.+...
T Consensus 81 ~--~i~l~~~~~~~~ 93 (106)
T 1wx7_A 81 L--TVHLVIKRQHRA 93 (106)
T ss_dssp E--EEEEEECCCCCS
T ss_pred C--EEEEEEcCCCCC
Confidence 8 999999877654
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=105.90 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=69.2
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
+...+.|+++.. |+ ...+.+++++||++||++| +...++| +++|||+|.|+.|+|+.+|++|+|. ++
T Consensus 22 ~~~~m~I~Vk~~-g~-~~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~----~g 88 (101)
T 2klc_A 22 HPKIMKVTVKTP-KE-KEEFAVPENSSVQQFKEEI-----SKRFKSH--TDQLVLIFAGKILKDQDTLSQHGIH----DG 88 (101)
T ss_dssp -CCCEEEEEECS-SC-EEEEEECSCCCHHHHHHHH-----HHHHTCC--GGGEEEEETTEEECTTCCTGGGTCC----TT
T ss_pred CCCeEEEEEEeC-Cc-EEEEEECCCCCHHHHHHHH-----HHHHCcC--hhhEEEEECCEECCCcCcHHHcCCC----CC
Confidence 356789999988 54 4578999999999999999 7778999 9999999999999999999999999 99
Q ss_pred CeeEEEEEEccCc
Q 033457 84 GVTTMHVVIQPLV 96 (119)
Q Consensus 84 ~~~~vhlv~~~~~ 96 (119)
+ +|||+.+.+.
T Consensus 89 ~--~I~l~~~~~~ 99 (101)
T 2klc_A 89 L--TVHLVIKTQN 99 (101)
T ss_dssp C--EEEEEECCSS
T ss_pred C--EEEEEEcCCC
Confidence 9 9999988654
No 49
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.1e-16 Score=107.34 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=70.7
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
..++|+++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +|+
T Consensus 22 ~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~----~g~- 88 (106)
T 1ttn_A 22 YECQLRLRLSTGKD-LKLVVRSTDTVFHMKRRL-----HAAEGVE--PGSQRWFFSGRPLTDKMKFEELKIP----KDY- 88 (106)
T ss_dssp CSEEEEEEETTTEE-EEEEECTTSHHHHHHHHH-----HHTTCCC--STTCEEEETTEECCTTSHHHHCCCS----SSC-
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHH-----HHHHCcC--cccEEEEECCEECCCCCcHHHcCCC----CCC-
Confidence 45899999998854 578999999999999999 7788999 9999999999999999999999999 999
Q ss_pred eEEEEEEccCcc
Q 033457 86 TTMHVVIQPLVA 97 (119)
Q Consensus 86 ~~vhlv~~~~~~ 97 (119)
+|||+.+.+..
T Consensus 89 -ti~lv~~~~~~ 99 (106)
T 1ttn_A 89 -VVQVIVSQPVQ 99 (106)
T ss_dssp -EEEEECCCSSC
T ss_pred -EEEEEEeCCCC
Confidence 99999987654
No 50
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=7.7e-17 Score=107.52 Aligned_cols=83 Identities=7% Similarity=0.093 Sum_probs=71.6
Q ss_pred CCceeEEEEEEeCCCc---eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCC-CCcccCCccc
Q 033457 3 EGEECVELKFRIYDGT---DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEND-RTLADSRITV 78 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~---~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~-~tL~~~~i~~ 78 (119)
.+.+.++|+|+..++. +...+++++++||.+||++| +...++| +++|||+|.|+.|+|+ .+|++|+|.
T Consensus 3 ~~~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I-----~~~~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~- 74 (102)
T 1v5o_A 3 SGSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLC-----ELESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLK- 74 (102)
T ss_dssp CCSCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHH-----HHHTCCC--GGGBCEEETTEEECCSSSBHHHHTCC-
T ss_pred CCCCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHH-----HHHHCcC--hHHeEEEECCEECCCCcccHHHCCCC-
Confidence 3456688999987553 45678999999999999999 8888999 9999999999999888 699999999
Q ss_pred cCCCCCeeEEEEEEccCccc
Q 033457 79 GDLPSGVTTMHVVIQPLVAK 98 (119)
Q Consensus 79 ~~~~~~~~~vhlv~~~~~~~ 98 (119)
+++ +|||+.+.+++.
T Consensus 75 ---~g~--~l~l~~~~~gg~ 89 (102)
T 1v5o_A 75 ---DGD--MVVLLQKDNVGL 89 (102)
T ss_dssp ---TTE--EEEECBCCCCCC
T ss_pred ---CCC--EEEEEECCCCCC
Confidence 999 999998876664
No 51
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.67 E-value=2.2e-16 Score=104.12 Aligned_cols=78 Identities=28% Similarity=0.415 Sum_probs=69.1
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|+++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++ +
T Consensus 1 M~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I-----~~~~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~----~g~--~ 66 (98)
T 1yx5_B 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES--T 66 (98)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHH-----HHHTCCC--GGGEEEEETTEECCTTSBTGGGTCC----TTC--E
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCcC--hhhEEEEECCEECCCCCCHHHcCCC----CCC--E
Confidence 368899988864 578999999999999999 7778899 9999999999999999999999999 999 9
Q ss_pred EEEEEccCcccc
Q 033457 88 MHVVIQPLVAKK 99 (119)
Q Consensus 88 vhlv~~~~~~~~ 99 (119)
|||+.+.+++..
T Consensus 67 i~l~~~~~gG~~ 78 (98)
T 1yx5_B 67 LHLVLRLRGGRD 78 (98)
T ss_dssp EEEEECCCCC--
T ss_pred EEEEEeCCCCCc
Confidence 999999886643
No 52
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.5e-16 Score=105.36 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=69.6
Q ss_pred CCCceeEEEEEEeCCCceeE-EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccC
Q 033457 2 GEGEECVELKFRIYDGTDIC-HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGD 80 (119)
Q Consensus 2 ~~~~~~i~ik~~~~~g~~~~-~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~ 80 (119)
+++++.++|+++.. | ..+ .+++++++||.+||++| ++..++| +++|||+|.|+.|+|+ +|++|+|.
T Consensus 2 ~~~~~~m~i~Vk~~-g-~~~~~l~v~~~~TV~~lK~~I-----~~~tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~--- 68 (96)
T 1wgg_A 2 SSGSSGYSVTVKWG-K-EKFEGVELNTDEPPMVFKAQL-----FALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMK--- 68 (96)
T ss_dssp CSCCCEEEEEEEET-T-EEEEEEEEESSSCHHHHHHHH-----HHHTCCC--TTTSCCEETTEECCSS-CCCSCCCC---
T ss_pred CCCCcEEEEEEEEC-C-EEEEEEEECCCCcHHHHHHHH-----HHHHCcC--HHHeEEEECCcCCCCC-CHHHCCCC---
Confidence 45688999999974 4 356 48999999999999999 8889999 9999999999999999 99999999
Q ss_pred CCCCeeEEEEEEccCc
Q 033457 81 LPSGVTTMHVVIQPLV 96 (119)
Q Consensus 81 ~~~~~~~vhlv~~~~~ 96 (119)
+++ +|||+..+..
T Consensus 69 -~g~--~i~l~~~~~~ 81 (96)
T 1wgg_A 69 -NGM--TVLMMGSADA 81 (96)
T ss_dssp -SSC--EEECCCCCCC
T ss_pred -CCC--EEEEEecchh
Confidence 999 9998877653
No 53
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.66 E-value=1.3e-16 Score=107.71 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=71.6
Q ss_pred eeEEEEEEeC---CCceeEEEeecC-CccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCC
Q 033457 6 ECVELKFRIY---DGTDICHGTYAS-STTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDL 81 (119)
Q Consensus 6 ~~i~ik~~~~---~g~~~~~~~~~~-~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~ 81 (119)
..++|+++.+ +|+ ...+.+++ ++||.+||++| +...++| +++|||+|.|++|+|+.+|++|+|.
T Consensus 26 ~~i~i~Vk~~~~~~g~-~~~l~v~~l~~TV~~LK~~I-----~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~---- 93 (111)
T 1we6_A 26 GPATIRVSKPNENDGQ-FMEITVQSLSENVGSLKEKI-----AGEIQIP--ANKQKLSGKAGFLKDNMSLAHYNVG---- 93 (111)
T ss_dssp SCEEEEECCTTCSSSC-CEEEEESCSSSBHHHHHHHH-----HHHTTCC--TTTSEEECSSSBCCTTSBTTTTTCS----
T ss_pred CcEEEEEEecccCCCc-EEEEEecCCCCcHHHHHHHH-----HHHHCCC--HHHeEEEECCEECCCCCcHHHCCCC----
Confidence 4689999988 675 45789998 99999999999 8888999 9999999999999999999999999
Q ss_pred CCCeeEEEEEEccCccc
Q 033457 82 PSGVTTMHVVIQPLVAK 98 (119)
Q Consensus 82 ~~~~~~vhlv~~~~~~~ 98 (119)
+++ +|||+++.+++.
T Consensus 94 ~g~--~l~l~~r~~GGk 108 (111)
T 1we6_A 94 AGE--ILTLSLRERSGP 108 (111)
T ss_dssp SSC--EEEEECSSCCSS
T ss_pred CCC--EEEEEEEcCCCC
Confidence 999 999999988774
No 54
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.66 E-value=7.4e-17 Score=111.18 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=62.1
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccC---CCCC
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGD---LPSG 84 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~---~~~~ 84 (119)
+.|++| .++....+++++++||.+||++| ++.+++| +++|||||+||.|+|+.+|++|+|.-.. ..++
T Consensus 3 mfl~ir--~~ktti~lev~~sdTV~~lK~kI-----~~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~s 73 (118)
T 2fnj_B 3 VFLMIR--RHKTTIFTDAKESSTVFELKRIV-----EGILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPA 73 (118)
T ss_dssp EEEEEE--EBTEEEEEEEETTSBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCE
T ss_pred EEEEEe--cCCEEEEEEeCCcChHHHHHHHH-----HHHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCC
Confidence 455555 44445678999999999999999 8899999 9999999999999999999999999100 0145
Q ss_pred eeEEEEEEc
Q 033457 85 VTTMHVVIQ 93 (119)
Q Consensus 85 ~~~vhlv~~ 93 (119)
++||+++
T Consensus 74 --tL~L~lr 80 (118)
T 2fnj_B 74 --TVGLAFR 80 (118)
T ss_dssp --EEEEEEB
T ss_pred --EEEEEec
Confidence 9999999
No 55
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.4e-16 Score=106.56 Aligned_cols=80 Identities=29% Similarity=0.358 Sum_probs=72.3
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
.++.|.++..+|+. ..+++++++||.+||++| +...++| +++|||+|+|+.|+|+.+|++|+|. +++
T Consensus 8 ~~~~i~vk~l~G~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~----~gs- 74 (114)
T 2kdi_A 8 GEFQIFAKTLTGKT-ITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIWAGKQLEDGRTLSDYNIQ----RES- 74 (114)
T ss_dssp CCCEEEEEETTCCE-EEEECCTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTCBTTTTTCC----SSC-
T ss_pred CcEEEEEEeCCCcE-EEEEECCCCcHHHHHHHH-----HHHHCcC--hHHEEEEECCEECCCCCcHHHCCCC----CCC-
Confidence 35789999999964 578999999999999999 7788999 9999999999999999999999999 999
Q ss_pred eEEEEEEccCcccc
Q 033457 86 TTMHVVIQPLVAKK 99 (119)
Q Consensus 86 ~~vhlv~~~~~~~~ 99 (119)
+|||+.+.+++..
T Consensus 75 -tI~l~~~~~GG~~ 87 (114)
T 2kdi_A 75 -TLHLVLRLRGGSM 87 (114)
T ss_dssp -EEEEEECCCSSCC
T ss_pred -EEEEEEEcCCCce
Confidence 9999999887743
No 56
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.66 E-value=3.2e-16 Score=110.91 Aligned_cols=78 Identities=23% Similarity=0.198 Sum_probs=68.8
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCee
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
.+.|.++..+|+. ..+.+++++||++||++| ++..++| +++|||+|+|+.|+|+.+|++|+|. +++
T Consensus 81 ~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i-----~~~~gip--~~~q~L~~~G~~L~d~~tL~~y~i~----~g~-- 146 (159)
T 3rt3_B 81 PLSILVRNNKGRS-STYEVRLTQTVAHLKQQV-----SGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLK----PLS-- 146 (159)
T ss_dssp CEEEEEECTTSCE-EEEEECTTSBHHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTSBGGGGTCC----TTC--
T ss_pred cEEEEEECCCCCE-EEEEeCCCCCHHHHHHHH-----HHHHCCC--HHHEEEEECCeecCCCCCHHHcCCC----CCC--
Confidence 4677788888864 578999999999999999 7788999 9999999999999999999999999 999
Q ss_pred EEEEEEccCccc
Q 033457 87 TMHVVIQPLVAK 98 (119)
Q Consensus 87 ~vhlv~~~~~~~ 98 (119)
++||+++.+++.
T Consensus 147 ~l~l~~rl~GG~ 158 (159)
T 3rt3_B 147 TVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECCC---
T ss_pred EEEEEEecCCCC
Confidence 999999988763
No 57
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.66 E-value=5.7e-16 Score=101.02 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=65.8
Q ss_pred eEEEEEEeCC-CceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE-------cceeeCCCCCcccCCccc
Q 033457 7 CVELKFRIYD-GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH-------AGKILENDRTLADSRITV 78 (119)
Q Consensus 7 ~i~ik~~~~~-g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~-------~Gk~L~D~~tL~~~~i~~ 78 (119)
.|+|.|..+. +.......|++++||.+||++| +..+++| +++||||| .|++|+|+.+|++|+|+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki-----~~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~- 73 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENV-----FTHFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCR- 73 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHH-----HTTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCC-
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHH-----HHHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCC-
Confidence 4667776553 3344578899999999999999 9999999 99999996 69999999999999999
Q ss_pred cCCCCCeeEEEEEEccC
Q 033457 79 GDLPSGVTTMHVVIQPL 95 (119)
Q Consensus 79 ~~~~~~~~~vhlv~~~~ 95 (119)
+|+ +|||+-..|
T Consensus 74 ---~g~--~ihlvd~~P 85 (86)
T 4b6w_A 74 ---DEF--VIHVVDLQP 85 (86)
T ss_dssp ---TTC--EEEEEECCC
T ss_pred ---CCC--EEEEEeCCC
Confidence 999 999997765
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.66 E-value=4.8e-16 Score=105.04 Aligned_cols=78 Identities=28% Similarity=0.391 Sum_probs=70.5
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
..++|+++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 34 ~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~----~gs- 100 (111)
T 2ojr_A 34 LAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES- 100 (111)
T ss_dssp SCEEEEEECSSSCE-EEEEECTTCBHHHHHHHH-----HHHHCCC--TTTEEEEETTEECCSSCBTTTTTCC----TTC-
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCCHHHHHHHH-----HHHHCcC--cccEEEEECCEECCCCCcHHHcCCC----CCC-
Confidence 57999999988864 478999999999999999 7778899 9999999999999999999999999 999
Q ss_pred eEEEEEEccCcc
Q 033457 86 TTMHVVIQPLVA 97 (119)
Q Consensus 86 ~~vhlv~~~~~~ 97 (119)
+|||+++.+++
T Consensus 101 -~I~l~~rl~GG 111 (111)
T 2ojr_A 101 -TLHLVLRLRGG 111 (111)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEeCCCC
Confidence 99999987753
No 59
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.65 E-value=3.4e-16 Score=113.28 Aligned_cols=79 Identities=29% Similarity=0.400 Sum_probs=69.7
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|.++..+|+. ..+.+++++||.+||++| +...++| +++|||+|+|+.|+|+.+|++|+|. +++ +
T Consensus 1 MqI~Vk~~~Gk~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~----~gs--t 66 (169)
T 3l0w_B 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES--T 66 (169)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHH-----HHHHCCC--TTTEEEEETTEECCTTSBGGGGTCC----TTC--E
T ss_pred CEEEEEeCCCCE-EEEEeCCCCCHHHHHHHH-----HHHHCcC--HHHEEEEECCccccCcCcHHHcCCC----CCC--E
Confidence 368889999965 578999999999999999 7788899 9999999999999999999999999 999 9
Q ss_pred EEEEEccCccccc
Q 033457 88 MHVVIQPLVAKKK 100 (119)
Q Consensus 88 vhlv~~~~~~~~~ 100 (119)
|||+++.+++.+.
T Consensus 67 I~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 67 LHLVLRLRGGGGE 79 (169)
T ss_dssp EEEEECCCC---C
T ss_pred EEEEEEecccccc
Confidence 9999999877543
No 60
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=104.93 Aligned_cols=76 Identities=21% Similarity=0.199 Sum_probs=66.3
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
..++|.++. |+ ...+.+++++||.+||++| ++..++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 18 ~~m~I~Vk~--g~-~~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~----~gs- 82 (93)
T 2l7r_A 18 GSMQLFVRA--QE-LHTFEVTGQETVAQIKAHV-----ASLEGIA--PEDQVVLLAGAPLEDEATLGQCGVE----ALT- 82 (93)
T ss_dssp --CEEEEES--SS-EEEEECCSSCBHHHHHHHH-----HHHHTCC--GGGCEEEETTEECCTTSBHHHHTCC----SSC-
T ss_pred CcEEEEEEC--CC-EEEEEeCCCCcHHHHHHHH-----HHHhCcC--hhHEEEEECCEECCCCCcHHHCCCC----CCC-
Confidence 346777776 54 4578999999999999999 7788999 9999999999999999999999999 999
Q ss_pred eEEEEEEccCcc
Q 033457 86 TTMHVVIQPLVA 97 (119)
Q Consensus 86 ~~vhlv~~~~~~ 97 (119)
+|||+++.+++
T Consensus 83 -tI~lv~rl~GG 93 (93)
T 2l7r_A 83 -TLEVAGRMLGG 93 (93)
T ss_dssp -EEEEECCCCCC
T ss_pred -EEEEEEecCCC
Confidence 99999987753
No 61
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.5e-17 Score=108.03 Aligned_cols=75 Identities=21% Similarity=0.338 Sum_probs=64.1
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
-.|.|+++. +|+ ...+.+++++||++||++| +...++| +++|||+|+|+.|+|+.+|++|+|. +|+
T Consensus 27 m~i~I~Vk~-~g~-~~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~----~g~- 92 (101)
T 3m63_B 27 MSLNIHIKS-GQD-KWEVNVAPESTVLQFKEAI-----NKANGIP--VANQRLIYSGKILKDDQTVESYHIQ----DGH- 92 (101)
T ss_dssp --CCEEEEC-SSC-CCCBCCCTTSBHHHHHHHH-----HHHHSCC--STTCCEEETTEECCTTSBTTTTTCC----TTE-
T ss_pred cEEEEEEEE-CCE-EEEEEeCCCCCHHHHHHHH-----HHHHCcC--hHHEEEEECCEECCCcCcHHHCCCC----CCC-
Confidence 356777775 664 4578999999999999999 7778999 9999999999999999999999999 999
Q ss_pred eEEEEEEccC
Q 033457 86 TTMHVVIQPL 95 (119)
Q Consensus 86 ~~vhlv~~~~ 95 (119)
+|||+.+.|
T Consensus 93 -tI~lv~~~P 101 (101)
T 3m63_B 93 -SVHLVKSQP 101 (101)
T ss_dssp -EEEECCCC-
T ss_pred -EEEEEeCCC
Confidence 999987653
No 62
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.45 E-value=1.2e-17 Score=104.82 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=67.0
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|.++..+|+. ..+++++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++ +
T Consensus 1 M~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i-----~~~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~----~g~--~ 66 (76)
T 3b1l_X 1 MIVFVRFNSSYG-FPVEVDSDTSILQLKEVV-----AKQQGVP--ADQLRVIFAGKELPNHLTVQNCDLE----QQS--I 66 (76)
Confidence 357788878854 468999999999999999 8888999 9999999999999999999999999 999 9
Q ss_pred EEEEEccCc
Q 033457 88 MHVVIQPLV 96 (119)
Q Consensus 88 vhlv~~~~~ 96 (119)
+|+++++++
T Consensus 67 i~l~~rlrg 75 (76)
T 3b1l_X 67 VHIVQRPRR 75 (76)
Confidence 999998764
No 63
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=4.1e-16 Score=104.85 Aligned_cols=79 Identities=25% Similarity=0.331 Sum_probs=66.9
Q ss_pred ceeEEEEEEeCCC---ceeEEEeecC---------CccHHHHHHHcccccCCCcc--CCCCCCCc-EEEEEcceeeCCCC
Q 033457 5 EECVELKFRIYDG---TDICHGTYAS---------STTVATLKQQLVAEWPQGKT--ITPKSIND-VKLIHAGKILENDR 69 (119)
Q Consensus 5 ~~~i~ik~~~~~g---~~~~~~~~~~---------~~TV~~LK~~I~~~wp~~~~--~~p~~~~~-qrLi~~Gk~L~D~~ 69 (119)
+..+.|+|+..++ .. ..+.+++ ++||.+||++| +... ++| +++ |||||.||.|+|+.
T Consensus 10 ~~~~~i~Vk~~~~~~~~~-~~l~v~~~~~~~v~~~~~TV~~LK~~i-----~~~~~~gip--~~~~qrLi~~Gk~L~D~~ 81 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPK-SILQLPETELGEYSLGGYSISFLKQLI-----AGKLQESVP--DPELIDLIYCGRKLKDDQ 81 (107)
T ss_dssp CCSCCEEEEETTCTTSCC-EEECCCCCSSCSSCCCCCBHHHHHHHH-----HHHCTTTCC--CSSSEEEEETTEECCTTC
T ss_pred CCceEEEEEeCCCCCccE-EEEEecCccccccCcccCCHHHHHHHH-----HHHhccCCC--hhhcEEEEECCeECCCCC
Confidence 4568899999887 43 4677544 49999999999 6666 899 999 99999999999999
Q ss_pred CcccCCccccCCCCCeeEEEEEEccCcc
Q 033457 70 TLADSRITVGDLPSGVTTMHVVIQPLVA 97 (119)
Q Consensus 70 tL~~~~i~~~~~~~~~~~vhlv~~~~~~ 97 (119)
+|++|+|. +++ +|||+.+.+..
T Consensus 82 tL~~y~i~----~g~--~i~lv~~~~~~ 103 (107)
T 1x1m_A 82 TLDFYGIQ----PGS--TVHVLRKSWSG 103 (107)
T ss_dssp BHHHHTCC----TTC--EEEEEESSCCS
T ss_pred cHHHcCCC----CCC--EEEEEeCCCCC
Confidence 99999999 999 99999886643
No 64
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=108.80 Aligned_cols=80 Identities=28% Similarity=0.379 Sum_probs=71.8
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
++..++|.++..+|+. ..+.+++++||.+||++| ++..++| +++|||+|.|+.|+|+.+|++|+|. ++
T Consensus 17 ~~~~m~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I-----~~~~gip--~~~QrL~~~g~~L~d~~tL~~~~i~----~~ 84 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KE 84 (172)
T ss_dssp --CCEEEEEEETTTEE-EEEEECTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTCBTGGGTCC----TT
T ss_pred CCCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCcC--hHHEEEEECCccccccCCHhHcCCc----cc
Confidence 3677999999999865 578999999999999999 8888999 9999999999999999999999999 99
Q ss_pred CeeEEEEEEccCcc
Q 033457 84 GVTTMHVVIQPLVA 97 (119)
Q Consensus 84 ~~~~vhlv~~~~~~ 97 (119)
+ ++||+++.+++
T Consensus 85 ~--~l~l~~~~~gg 96 (172)
T 3u30_A 85 S--TLHLVLRLRGG 96 (172)
T ss_dssp C--EEEEEECCCCC
T ss_pred c--eeeeeeccccc
Confidence 9 99999987755
No 65
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=9.1e-16 Score=100.05 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=67.9
Q ss_pred CCceeEEEEEEeCCCceeEEEeecCC-----ccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCC-CCCcccCCc
Q 033457 3 EGEECVELKFRIYDGTDICHGTYASS-----TTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILEN-DRTLADSRI 76 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~~~~~~-----~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D-~~tL~~~~i 76 (119)
+++..++|+++.. |+ ...+.++++ +||.+||++| +...++| +++|||+|.|+.|.| +.+|++|+|
T Consensus 3 ~~~~~~~v~Vk~~-~~-~~~i~v~~~~~~~~~TV~~LK~~i-----~~~~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i 73 (92)
T 1wxv_A 3 SGSSGLTVTVTHS-NE-KHDLHVTSQQGSSEPVVQDLAQVV-----EEVIGVP--QSFQKLIFKGKSLKEMETPLSALGI 73 (92)
T ss_dssp CCCSSEEEEEECS-SS-EEEEEECCCSSSSSCBHHHHHHHH-----HHHTCCC--TTTCEEEETTEEECCSSSBHHHHTC
T ss_pred CCCCeEEEEEEEC-CE-EEEEEECCCcCcccCcHHHHHHHH-----HHHHCcC--HHHEEEEECCeecCCCcccHHHCCC
Confidence 4467799999885 43 457899985 9999999999 7788999 999999999999988 568999999
Q ss_pred cccCCCCCeeEEEEEEccCcc
Q 033457 77 TVGDLPSGVTTMHVVIQPLVA 97 (119)
Q Consensus 77 ~~~~~~~~~~~vhlv~~~~~~ 97 (119)
. +++ +|||+.++..+
T Consensus 74 ~----~g~--~i~l~~~~~~~ 88 (92)
T 1wxv_A 74 Q----DGC--RVMLIGKKNSG 88 (92)
T ss_dssp C----SSE--EEEEESCCSCS
T ss_pred C----CCC--EEEEEecCCCC
Confidence 9 888 99998776544
No 66
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.61 E-value=3.2e-15 Score=101.07 Aligned_cols=75 Identities=15% Similarity=0.052 Sum_probs=63.2
Q ss_pred eEEEEEEeC--CC-ceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCc-cccCCC
Q 033457 7 CVELKFRIY--DG-TDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRI-TVGDLP 82 (119)
Q Consensus 7 ~i~ik~~~~--~g-~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i-~~~~~~ 82 (119)
+|++++.+. .+ .....+.+++++||++||++| ++.+++| +++|||||+|++|+|+.+|++|+| + +
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I-----~~k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~----~ 90 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMV-----FLDYGFP--PVLQQWVIGQRLARDQETLHSHGVRQ----N 90 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEEECTTCBTGGGTCCS----T
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHH-----HHHhCCC--HHHEEEeccCeEccCcCcHHHcCCCC----C
Confidence 455555444 33 235578999999999999999 8889999 999999999999999999999999 6 8
Q ss_pred CCeeEEEEEEcc
Q 033457 83 SGVTTMHVVIQP 94 (119)
Q Consensus 83 ~~~~~vhlv~~~ 94 (119)
|+ ++||++-.
T Consensus 91 G~--t~hL~l~~ 100 (105)
T 4dbg_A 91 GD--SAYLYLLS 100 (105)
T ss_dssp TC--EEEEEECC
T ss_pred CC--EEEEEEEe
Confidence 89 99998764
No 67
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.61 E-value=9.8e-16 Score=113.01 Aligned_cols=78 Identities=28% Similarity=0.367 Sum_probs=71.6
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCee
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
.++|.++..+|+. ..+++++++||.+||++| ++..++| +++|||+|+|+.|+|+.+|++|+|. +++
T Consensus 105 eMqI~VKtl~Gkt-~~l~V~~s~TV~~LK~kI-----~~~~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~----~gs-- 170 (189)
T 3q3f_A 105 GGQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES-- 170 (189)
T ss_dssp CEEEEEECTTSCE-EEEEECTTCBHHHHHHHH-----HHHHCCC--GGGCCEEETTEECCTTCBGGGGTCC----TTC--
T ss_pred ceeeeeecCCCCE-EEEEeCCCCcHHHHHHHH-----HhccCCC--HHHEEEEECCEECCCCCCHHHCCCC----CCC--
Confidence 4789999998865 578999999999999999 8788999 9999999999999999999999999 999
Q ss_pred EEEEEEccCccc
Q 033457 87 TMHVVIQPLVAK 98 (119)
Q Consensus 87 ~vhlv~~~~~~~ 98 (119)
+|||+++.+++.
T Consensus 171 tI~LvlrlrGG~ 182 (189)
T 3q3f_A 171 TLHLVLRLRGGG 182 (189)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEEEEcCCCC
Confidence 999999988764
No 68
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.60 E-value=1e-15 Score=99.93 Aligned_cols=78 Identities=24% Similarity=0.233 Sum_probs=68.1
Q ss_pred CCceeEEEEEEeCCCceeEEE-eecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE---EcceeeCCCCCcccCCccc
Q 033457 3 EGEECVELKFRIYDGTDICHG-TYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI---HAGKILENDRTLADSRITV 78 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~-~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi---~~Gk~L~D~~tL~~~~i~~ 78 (119)
.+++.++|+++. +|+ .+.+ ++++++||.+||++| ++.+++| +++|||+ |.|+.|+|+.+|++|+|.
T Consensus 3 ~~~~~m~i~Vk~-~g~-~~~i~~v~~~~TV~~lK~~I-----~~~~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~- 72 (90)
T 1v5t_A 3 SGSSGLPIIVKW-GGQ-EYSVTTLSEDDTVLDLKQFL-----KTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLK- 72 (90)
T ss_dssp CCCCSCCEEEEE-TTE-EEEECSCCSSSBHHHHHHHH-----HHHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCC-
T ss_pred CCCceEEEEEEE-CCE-EEEEEEeCCCCCHHHHHHHH-----HHHHCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCC-
Confidence 446778888887 453 4578 999999999999999 8889999 9999999 999999999999999999
Q ss_pred cCCCCCeeEEEEEEccC
Q 033457 79 GDLPSGVTTMHVVIQPL 95 (119)
Q Consensus 79 ~~~~~~~~~vhlv~~~~ 95 (119)
+++ +|||+..+.
T Consensus 73 ---~g~--~l~l~~~~~ 84 (90)
T 1v5t_A 73 ---PNT--KIMMMGTRE 84 (90)
T ss_dssp ---TTE--EEEEECCCS
T ss_pred ---CCC--EEEEEecCc
Confidence 888 899876543
No 69
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=3.4e-15 Score=96.56 Aligned_cols=73 Identities=26% Similarity=0.308 Sum_probs=61.6
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCee
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
++.+...+ +|+ ...+.+++++||.+||++| ++..++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 12 ~~~~~~~~-~g~-~~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~----~g~-- 76 (85)
T 2kd0_A 12 TIKLTVKF-GGK-SIPLSVSPDCTVKDLKSQL-----QPITNVL--PRGQKLIFKGKVLVETSTLKQSDVG----SGA-- 76 (85)
T ss_dssp CEEEEEEE-TTE-EEEEEECTTSBHHHHHHHH-----HHHHCCC--TTTCEEEETTEECCTTCBTTTTTCC----TTE--
T ss_pred cEEEEEEE-CCE-EEEEEECCCCcHHHHHHHH-----HHHHCcC--hHHEEEEECCeECCCcCCHHHCCCC----CCC--
Confidence 34444444 453 4578999999999999999 7788999 9999999999999999999999999 898
Q ss_pred EEEEEEcc
Q 033457 87 TMHVVIQP 94 (119)
Q Consensus 87 ~vhlv~~~ 94 (119)
+|||+..+
T Consensus 77 ~l~l~~s~ 84 (85)
T 2kd0_A 77 KLMLMASQ 84 (85)
T ss_dssp EEEEECCC
T ss_pred EEEEEEeC
Confidence 88887643
No 70
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.59 E-value=8.5e-17 Score=111.33 Aligned_cols=77 Identities=30% Similarity=0.405 Sum_probs=0.5
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|.++..+|+. ..+.+++++||.+||++| ++..++| +++|||+|.|+.|+|+.+|++|+|. +++ +
T Consensus 1 M~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I-----~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~----~gs--t 66 (128)
T 3u5e_m 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES--T 66 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCE-EEEEeCCCCCHHHHHHHH-----HHHhCcC--hHHEEEEECCEECCCCCchhhhccC----CCC--E
Confidence 357778888864 478999999999999999 8888999 9999999999999999999999999 999 9
Q ss_pred EEEEEccCccc
Q 033457 88 MHVVIQPLVAK 98 (119)
Q Consensus 88 vhlv~~~~~~~ 98 (119)
|||+++.+++.
T Consensus 67 i~l~~rl~GG~ 77 (128)
T 3u5e_m 67 LHLVLRLRGGI 77 (128)
T ss_dssp ----------C
T ss_pred EEEEEEcCCCC
Confidence 99999988874
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.58 E-value=6.5e-15 Score=102.46 Aligned_cols=77 Identities=29% Similarity=0.398 Sum_probs=68.3
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCee
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVT 86 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~ 86 (119)
.+.|.++..+|+. ..+.+++++||.+||++| +...++| +++|||+|.|+.|+|+.+|++|+|. +++
T Consensus 76 ~~~i~Vk~~~g~~-~~~~v~~~~tv~~lK~~i-----~~~~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~----~~~-- 141 (152)
T 3b08_A 76 GMQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES-- 141 (152)
T ss_dssp CEEEEEEESSSCE-EEEEECTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTSBTGGGTCC----TTC--
T ss_pred ccceeeeecCCCE-EEEEeCCCCcHHHHHHHH-----HHHhCcC--hhhEEEEECCEECCCCCCHHHcCCC----CCC--
Confidence 3677778788854 578999999999999999 7778899 9999999999999999999999999 999
Q ss_pred EEEEEEccCcc
Q 033457 87 TMHVVIQPLVA 97 (119)
Q Consensus 87 ~vhlv~~~~~~ 97 (119)
++||+++.+++
T Consensus 142 ~i~l~~r~~GG 152 (152)
T 3b08_A 142 TLHLVLRLRGG 152 (152)
T ss_dssp EEEEEECCCC-
T ss_pred EEEEEEecCCC
Confidence 99999998764
No 72
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=107.71 Aligned_cols=76 Identities=29% Similarity=0.412 Sum_probs=63.9
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
+.|.++..+|+. ..+.+++++||.+||++| ++.+++| +++|||+|.|+.|+|+.+|++|+|+ +++ +
T Consensus 97 ~~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I-----~~~~gip--~~~q~L~~~g~~L~D~~tL~~y~i~----~g~--t 162 (172)
T 3u30_A 97 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES--T 162 (172)
T ss_dssp EEEEEEESSCCE-EEEEECTTCBHHHHHHHH-----HHHHCCC--GGGCCEEETTEECCTTSBSGGGTCC----TTC--E
T ss_pred ccceeecccCcc-eeEEecCCCCHHHHHHHH-----HHHhCCC--ceeEEEEECCccCCCCCcHHHhCCC----CCC--E
Confidence 456666677754 578999999999999999 7788999 9999999999999999999999999 999 9
Q ss_pred EEEEEccCcc
Q 033457 88 MHVVIQPLVA 97 (119)
Q Consensus 88 vhlv~~~~~~ 97 (119)
+||+++.+++
T Consensus 163 l~l~~rlrgG 172 (172)
T 3u30_A 163 LHLVLRLRGG 172 (172)
T ss_dssp EEECC-----
T ss_pred EEEEEecCCC
Confidence 9999987653
No 73
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.58 E-value=4.4e-15 Score=98.48 Aligned_cols=74 Identities=20% Similarity=0.103 Sum_probs=64.8
Q ss_pred ceeEEEEEEeCCCc-eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEc--ce---e-eCCCCCcccCCcc
Q 033457 5 EECVELKFRIYDGT-DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA--GK---I-LENDRTLADSRIT 77 (119)
Q Consensus 5 ~~~i~ik~~~~~g~-~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~--Gk---~-L~D~~tL~~~~i~ 77 (119)
+..|+|.|+.+.++ ....+.+++++||++||++| ++.+++| +++|||+|. |+ . ++|+.+|++|+|+
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI-----~~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~ 85 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKL-----EILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANS 85 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHH-----HHHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCS
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHH-----HHHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcC
Confidence 67889999987663 24578999999999999999 8899999 999999998 45 3 4899999999999
Q ss_pred ccCCCCCeeEEEEE
Q 033457 78 VGDLPSGVTTMHVV 91 (119)
Q Consensus 78 ~~~~~~~~~~vhlv 91 (119)
+|+ +|||+
T Consensus 86 ----~gs--tihlv 93 (95)
T 2kjr_A 86 ----DGL--RLHVV 93 (95)
T ss_dssp ----SSC--EEEEE
T ss_pred ----CCC--EEEEE
Confidence 999 99986
No 74
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.56 E-value=7.2e-15 Score=103.90 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=68.5
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE-E-cceeeCCCCCcccCCccccCCCCCe
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI-H-AGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi-~-~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
++|.++..+|+. ..+.+++++||.+||++| ++..++| +++|||+ | +|+.|+|+.+|++|+|. +++
T Consensus 3 m~i~vk~~~g~~-~~l~v~~~~tV~~lK~~I-----~~~~gip--~~~QrL~~~~~g~~L~d~~tL~~y~i~----~~~- 69 (159)
T 3rt3_B 3 WDLTVKMLAGNE-FQVSLSSSMSVSELKAQI-----TQKIGVH--AFQQRLAVHPSGVALQDRVPLASQGLG----PGS- 69 (159)
T ss_dssp CEEEEEETTSCE-EEEECCTTCCHHHHHHHH-----HHHHCCC--GGGEEEEEETTCCBCCTTSCGGGGTCC----TTC-
T ss_pred eEEEEEECCCCE-EEEEeCCCCcHHHHHHHH-----HHHhCCC--HHHEEEEEcCCCCCCCCCCCHHHcCCC----CCC-
Confidence 678899888864 578999999999999999 8888999 9999999 9 89999999999999999 999
Q ss_pred eEEEEEEcc-Ccc
Q 033457 86 TTMHVVIQP-LVA 97 (119)
Q Consensus 86 ~~vhlv~~~-~~~ 97 (119)
++||+++. +.+
T Consensus 70 -~l~l~~~~~~~~ 81 (159)
T 3rt3_B 70 -TVLLVVDKSDEP 81 (159)
T ss_dssp -EEEEEECCCCCC
T ss_pred -EEEEEccCCCCc
Confidence 99999984 443
No 75
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.56 E-value=6.4e-15 Score=98.09 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=67.9
Q ss_pred CCCceeEEEEEEeCCCc-eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc---ee----eCCCCCccc
Q 033457 2 GEGEECVELKFRIYDGT-DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG---KI----LENDRTLAD 73 (119)
Q Consensus 2 ~~~~~~i~ik~~~~~g~-~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G---k~----L~D~~tL~~ 73 (119)
+-|+..|+|.|..+..+ ....+.+++++||++||++| +..+++| +++|||+|.| +. ++|+.+|++
T Consensus 9 ~~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kI-----e~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 9 SHGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKL-----WKKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHH-----HHHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred cCCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHH-----HHHHCcC--HHHeEEEEecCCCcccceecCCcCCHHH
Confidence 34688999999987653 23578999999999999999 8899999 9999999998 33 589999999
Q ss_pred CCccccCCCCCeeEEEEEEc
Q 033457 74 SRITVGDLPSGVTTMHVVIQ 93 (119)
Q Consensus 74 ~~i~~~~~~~~~~~vhlv~~ 93 (119)
|+|+ +|+ +|||+-.
T Consensus 82 Y~I~----~g~--~Ihlvd~ 95 (97)
T 2kj6_A 82 FSPF----DGF--RLHIIDL 95 (97)
T ss_dssp HCCC----SCC--EEEEEEC
T ss_pred CCCC----CCC--EEEEEeC
Confidence 9999 999 9998754
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.55 E-value=1.7e-14 Score=100.33 Aligned_cols=76 Identities=29% Similarity=0.412 Sum_probs=68.3
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
+.|+++..+|+. ..+.+++++||++||++| ++..++| +++|||+|.|+.|+|+.+|++|+|. +++ +
T Consensus 1 M~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i-----~~~~gip--~~~q~L~~~g~~L~d~~tL~~~~i~----~~~--~ 66 (152)
T 3b08_A 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES--T 66 (152)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTSBTGGGTCC----TTC--E
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHH-----HHHHCcC--hHHeEEEECCeECcCcccHHHhccC----CCC--e
Confidence 368888888864 578999999999999999 7788999 9999999999999999999999999 999 9
Q ss_pred EEEEEccCcc
Q 033457 88 MHVVIQPLVA 97 (119)
Q Consensus 88 vhlv~~~~~~ 97 (119)
+|++.+.+++
T Consensus 67 l~l~~~~~~~ 76 (152)
T 3b08_A 67 LHLVLRLRGG 76 (152)
T ss_dssp EEEEECCTTC
T ss_pred eEEEeecccc
Confidence 9999987654
No 77
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.54 E-value=3.4e-15 Score=98.47 Aligned_cols=74 Identities=26% Similarity=0.254 Sum_probs=64.3
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
+..++|++++. | ....+++++++||.+||++| ++..++| +++|||+|.|+.|+ +.+|++|+|. +++
T Consensus 15 ~~~~~i~Vk~~-g-~~~~i~v~~~~TV~~LK~~I-----~~~tgip--~~~QrL~~~Gk~Ld-d~tL~~~~i~----~g~ 80 (95)
T 1v86_A 15 KELVDLKIIWN-K-TKHDVKVPLDSTGSELKQKI-----HSITGLP--PAMQKVMYKGLVPE-DKTLREIKVT----SGA 80 (95)
T ss_dssp CCCEEEEEEET-T-EEEEEEECTTSBHHHHHHHH-----HHHHCSC--STTCCCBSSSBCCS-SSBHHHHCCC----TTE
T ss_pred CceEEEEEEEC-C-EEEEEEECCCCcHHHHHHHH-----HHHHCcC--HHHeEEEECCeeCC-cCcHHHCCCC----CCC
Confidence 56788888864 4 35678999999999999999 8888999 99999999999994 5599999999 888
Q ss_pred eeEEEEEEcc
Q 033457 85 VTTMHVVIQP 94 (119)
Q Consensus 85 ~~~vhlv~~~ 94 (119)
+|||+..+
T Consensus 81 --~i~lv~~~ 88 (95)
T 1v86_A 81 --KIMVVGST 88 (95)
T ss_dssp --EEEECCSS
T ss_pred --EEEEEecc
Confidence 89987654
No 78
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.53 E-value=2e-14 Score=94.64 Aligned_cols=81 Identities=20% Similarity=0.157 Sum_probs=67.8
Q ss_pred CCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc---ee----eCCCCCcccCC
Q 033457 3 EGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG---KI----LENDRTLADSR 75 (119)
Q Consensus 3 ~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G---k~----L~D~~tL~~~~ 75 (119)
.++..|.|+|+..+......+.+++++||.+||++| +..+++| +++|||+|.| +. |+|+.+|++|+
T Consensus 3 ~~~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki-----~~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~ 75 (95)
T 1v6e_A 3 SGSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKL-----ELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYP 75 (95)
T ss_dssp SCCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHH-----HHHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSS
T ss_pred CCCcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHH-----HHHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCC
Confidence 446778998888765323578999999999999999 8889999 9999999987 43 58999999999
Q ss_pred ccccCCCCCeeEEEEEEccCc
Q 033457 76 ITVGDLPSGVTTMHVVIQPLV 96 (119)
Q Consensus 76 i~~~~~~~~~~~vhlv~~~~~ 96 (119)
|. +++ ++||+-..|+
T Consensus 76 i~----~g~--~l~v~d~~P~ 90 (95)
T 1v6e_A 76 VD----DGC--RIHVIDHSGS 90 (95)
T ss_dssp CC----TTC--EEEEBCCSCC
T ss_pred CC----CCC--EEEEEECCcc
Confidence 99 999 9998765443
No 79
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.50 E-value=2.4e-15 Score=111.00 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=1.0
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
++|.|+..+|+ ...+++++++||.+||++| ++.+++| +++|||||+|++|+|+.+|+ . ++ +
T Consensus 1 MqI~VKtL~Gk-titLeV~~sdTV~~LK~kI-----~~keGIP--~~qQRLIf~GK~LeD~~TLs----~-----~S--T 61 (189)
T 2xzm_9 1 MQVQVKTLEGE-TKIYTLEQGTSVLDLKSQI-----SQDMGFE--IDMMTLVNNGFIAPNTELVT----D-----DV--T 61 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCC-EEEEEECCcChHHHHHHHH-----HHHhCcC--hhHEEEEecCeECCCCCccc----C-----CC--E
Confidence 36778888885 4578999999999999999 8899999 99999999999999999998 3 56 8
Q ss_pred EEEEEccCcccc
Q 033457 88 MHVVIQPLVAKK 99 (119)
Q Consensus 88 vhlv~~~~~~~~ 99 (119)
|||+++.+++.+
T Consensus 62 LhLvlRLrGG~~ 73 (189)
T 2xzm_9 62 YYLSLKLLGGKK 73 (189)
T ss_dssp ----------CC
T ss_pred EEEEEecCCCcc
Confidence 999999988754
No 80
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.50 E-value=2.5e-14 Score=114.67 Aligned_cols=83 Identities=25% Similarity=0.336 Sum_probs=68.9
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
...+.|+|+..+|+. +.+++++++||.+||++|..+|. ..++| +++|||||.||+|+|+.+|++|+|. +++
T Consensus 5 ~~~M~I~VKtl~Gk~-~~leV~~~~TV~~LK~~I~~~~~--~~gip--~~~QrLiy~GK~L~D~~tL~dygI~----~gs 75 (368)
T 1oqy_A 5 SSAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRID----EKN 75 (368)
T ss_dssp -CCCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHHHTC--SSSCC--STEEEEESSSSEECSSSBTTTTCCC----TTS
T ss_pred CceEEEEEEeCCCCE-EEEEeCCCChHHHHHHHHHHHhC--cCCCC--hhheEEEECCeecCCcCCHHHcCCC----CCC
Confidence 456889999998864 57899999999999999944331 56799 9999999999999999999999999 887
Q ss_pred eeEEEEEEccCcc
Q 033457 85 VTTMHVVIQPLVA 97 (119)
Q Consensus 85 ~~~vhlv~~~~~~ 97 (119)
+++||+.+++.+
T Consensus 76 -tIv~lv~k~~~~ 87 (368)
T 1oqy_A 76 -FVVVMVTKTKAG 87 (368)
T ss_dssp -CEEEEEECCCSS
T ss_pred -EEEEEEecCCCC
Confidence 244888887654
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.7e-14 Score=92.11 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=61.2
Q ss_pred eEEEEEEeCCCcee-EEE-eecCCccHHHHHHHcccccCCC-ccCCCCCCCcEEEEEc--ceeeCCCCCcccCCccccCC
Q 033457 7 CVELKFRIYDGTDI-CHG-TYASSTTVATLKQQLVAEWPQG-KTITPKSINDVKLIHA--GKILENDRTLADSRITVGDL 81 (119)
Q Consensus 7 ~i~ik~~~~~g~~~-~~~-~~~~~~TV~~LK~~I~~~wp~~-~~~~p~~~~~qrLi~~--Gk~L~D~~tL~~~~i~~~~~ 81 (119)
.+.|.|+...|+.. +.+ ++++++||.+||++| ++ .+++| +++|||+|. |++|+|+.+|++|+|.
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I-----~~~~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~---- 78 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLF-----TKTHPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVG---- 78 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHH-----HHHCSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCC----
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHH-----HHHhcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCC----
Confidence 47899998877654 357 899999999999999 76 47888 999999987 9999999999999999
Q ss_pred CCCeeEEEE
Q 033457 82 PSGVTTMHV 90 (119)
Q Consensus 82 ~~~~~~vhl 90 (119)
+++ ++|+
T Consensus 79 ~~s--tl~~ 85 (88)
T 2dzj_A 79 TTA--TLYF 85 (88)
T ss_dssp SEE--EEEE
T ss_pred CCC--EEEE
Confidence 888 7765
No 82
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.48 E-value=6.5e-14 Score=109.90 Aligned_cols=76 Identities=29% Similarity=0.430 Sum_probs=68.0
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
...++|.++..+|+. ..+++++++||.+||++| ++..++| +++|||+|+|+.|+|+.+|++|+|. +++
T Consensus 231 ~~~MqI~VKtl~Gk~-~~leV~~s~TV~dLK~kI-----~~~~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~----~gs 298 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKT-ITLEVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KES 298 (307)
T ss_dssp CCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHH-----HHHHCCC--GGGCEEEETTEECCTTSBTGGGTCC----TTC
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHH-----HHHHCcC--hHHEEEEeCCeecCCCCCHHHcCCC----CCC
Confidence 457889999988864 578999999999999999 8888999 9999999999999999999999999 999
Q ss_pred eeEEEEEEcc
Q 033457 85 VTTMHVVIQP 94 (119)
Q Consensus 85 ~~~vhlv~~~ 94 (119)
+|||+++.
T Consensus 299 --tL~LvlRL 306 (307)
T 3ai5_A 299 --TLHLVLRL 306 (307)
T ss_dssp --EEEEEC--
T ss_pred --EEEEEEeC
Confidence 99999875
No 83
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.46 E-value=4.9e-14 Score=94.80 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=68.3
Q ss_pred CCCceeEEEEEEeCCCceeEEEeec-CCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce-----------e----e
Q 033457 2 GEGEECVELKFRIYDGTDICHGTYA-SSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK-----------I----L 65 (119)
Q Consensus 2 ~~~~~~i~ik~~~~~g~~~~~~~~~-~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk-----------~----L 65 (119)
+.|.+.+.|+||..+|+. .++++ +++||.+||++| ++..++| +++|||+|.|+ . +
T Consensus 2 ~~~~~~M~irvrs~~G~~--~v~v~~~~~Tv~~LK~kI-----~~~~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l 72 (107)
T 1wf9_A 2 SSGSSGTMLRVRSRDGLE--RVSVDGPHITVSQLKTLI-----QDQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMA 72 (107)
T ss_dssp CSSCCCEEEEEECSSCEE--EEEECCTTSBHHHHHHHH-----HHHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSC
T ss_pred CCCCCeEEEEEECCCCCE--EEEECCCCCcHHHHHHHH-----HHHhCcC--cccCEEEECCccccccCccccccccccC
Confidence 345677899999999954 57999 999999999999 8888999 99999999998 4 5
Q ss_pred CCCCCcccCCccccCCCCCeeEEEEEEcc
Q 033457 66 ENDRTLADSRITVGDLPSGVTTMHVVIQP 94 (119)
Q Consensus 66 ~D~~tL~~~~i~~~~~~~~~~~vhlv~~~ 94 (119)
+|+.+|++|+|. +|+ +|||+...
T Consensus 73 ~d~~tL~~~gi~----~G~--~L~l~~~~ 95 (107)
T 1wf9_A 73 DPNLRISSLNLA----HGS--MVYLAYEG 95 (107)
T ss_dssp CTTCBGGGTCCC----TTC--EEECCCSS
T ss_pred CCCCCHHHCCCC----CCC--EEEEEeCC
Confidence 899999999999 999 99987664
No 84
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.45 E-value=3.1e-13 Score=92.83 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=65.2
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc---ee----eCCCCCcccCCcccc
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG---KI----LENDRTLADSRITVG 79 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G---k~----L~D~~tL~~~~i~~~ 79 (119)
.|.|.|...++.....+.+++++||.+||++| +..+++| +++|||+|.| +. ++|+.+|++|+|.
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki-----~~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~-- 76 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKL-----ELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR-- 76 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHH-----HHHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCC--
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHH-----HHHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCC--
Confidence 67888877655313578999999999999999 8899999 9999999988 43 4899999999999
Q ss_pred CCCCCeeEEEEEEccCc
Q 033457 80 DLPSGVTTMHVVIQPLV 96 (119)
Q Consensus 80 ~~~~~~~~vhlv~~~~~ 96 (119)
+|+ +|||+-..|+
T Consensus 77 --~g~--~ihvvd~~p~ 89 (122)
T 1t0y_A 77 --DGY--RIHAVDVTGG 89 (122)
T ss_dssp --SSE--EEEEEECTTC
T ss_pred --CCC--EEEEEeCCCC
Confidence 999 9999876555
No 85
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=3e-13 Score=89.40 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=72.8
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|+|+++..+|+.+ .+.+.+++++..|++.+ ++..++| ++++||+|.|+.|.++.|+++|++. +++
T Consensus 5 ~~~i~ikVk~~~g~~i-~~~v~~~t~l~kl~~~y-----~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~me----dgD 72 (94)
T 2io1_B 5 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAY-----CERQGLS--MRQIRFRFDGQPINETDTPAQLEME----DED 72 (94)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTCCTTTTTCC----TTC
T ss_pred CCeEEEEEECCCCCEE-EEEECCCCHHHHHHHHH-----HHHhCCC--cccEEEEECCEEcCCCCCHHHcCCC----CCC
Confidence 6789999999888754 79999999999999999 8888999 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCccc
Q 033457 85 VTTMHVVIQPLVAK 98 (119)
Q Consensus 85 ~~~vhlv~~~~~~~ 98 (119)
+||++.+..++.
T Consensus 73 --~Idv~~~~~GG~ 84 (94)
T 2io1_B 73 --TIDVFQQQTGGV 84 (94)
T ss_dssp --EEEEEECCEESC
T ss_pred --EEEEEEeccCCC
Confidence 999999887763
No 86
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=6.2e-14 Score=93.89 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=64.0
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE--cceeeCCCCCcccCCccccCCCC
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH--AGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~--~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
+.+.+++++.+ + ...+++++++||++||++| ++.+++| +++|||+| .|+ |+|+.+|++|+|+ ++
T Consensus 8 ~m~~~~vk~~G-k-~~~v~v~~~~TV~~LK~~I-----~~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~----~g 73 (100)
T 2dzm_A 8 RMLDFRVEYRD-R-NVDVVLEDTCTVGEIKQIL-----ENELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLP----KN 73 (100)
T ss_dssp CEEEEEEECSS-C-EEEEEEETTSBHHHHHHHH-----HHHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCC----SE
T ss_pred ceEEEEEEeCC-e-EEEEEECCCCcHHHHHHHH-----HHHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCC----CC
Confidence 34555565644 3 4578999999999999999 8899999 99999997 777 9999999999999 88
Q ss_pred CeeEEEEEEccCcc
Q 033457 84 GVTTMHVVIQPLVA 97 (119)
Q Consensus 84 ~~~~vhlv~~~~~~ 97 (119)
+ +|||++....+
T Consensus 74 s--tL~lvl~~~~~ 85 (100)
T 2dzm_A 74 N--SLYVLTPDLPP 85 (100)
T ss_dssp E--EEEECCSSSCC
T ss_pred C--EEEEEecCCCC
Confidence 8 99998886654
No 87
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=2e-12 Score=85.06 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=72.2
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
+.|+|+++..+|+.+ .+.+.+++++..|++.+ ++..+++ ++++||+|.|+.|.++.|+++|++. +++
T Consensus 4 ~~i~ikVk~~~g~~v-~~~vk~~t~l~kl~~~y-----~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~me----dgD- 70 (91)
T 2io0_B 4 DHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAY-----CERQGLS--MRQIRFRFDGQPINETDTPAQLEME----DED- 70 (91)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHH-----HHHTTCC--STTEEEEETTEECCTTCCTTTTTCC----TTE-
T ss_pred CeEEEEEECCCCCEE-EEEECCCChHHHHHHHH-----HHHhCCC--cccEEEEECCEEcCCCCCHHHcCCC----CCC-
Confidence 679999999889754 79999999999999999 7788899 8999999999999999999999999 999
Q ss_pred eEEEEEEccCccc
Q 033457 86 TTMHVVIQPLVAK 98 (119)
Q Consensus 86 ~~vhlv~~~~~~~ 98 (119)
+|+++.+..++.
T Consensus 71 -~Idv~~~q~gg~ 82 (91)
T 2io0_B 71 -TIDVFQQQTGGV 82 (91)
T ss_dssp -EEEEEECCCCCC
T ss_pred -EEEEEEeccCCc
Confidence 999999887763
No 88
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.35 E-value=9.8e-13 Score=103.55 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=64.5
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE---EcceeeCCCCCcccCCccccCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI---HAGKILENDRTLADSRITVGDL 81 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi---~~Gk~L~D~~tL~~~~i~~~~~ 81 (119)
++.|+|+|+.. |+ ...+++++++||++||++| ++.+++| +++|||| |+|++|+|+.+|++|+|.
T Consensus 3 ~~~i~i~Vk~~-g~-~~~v~v~~~~Tv~~lK~~I-----~~~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik---- 69 (320)
T 3shq_A 3 VKEVVVIVKWS-GK-EYPVDLTDQDTVEVLRHEI-----FRKTQVR--PERQKLLNLKYKGKTAADNVKISALELK---- 69 (320)
T ss_dssp -CEEEEEEEET-TE-EEEEEEETTSBHHHHHHHH-----HHHHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC----
T ss_pred CceEEEEEEEC-CE-EEEEEECCCCcHHHHHHHH-----HHHHCcC--HHHeEEeecccCCcccCccccHHHcCCC----
Confidence 46788888874 54 5679999999999999999 8889999 9999999 899999999999999999
Q ss_pred CCCeeEEEEEEccC
Q 033457 82 PSGVTTMHVVIQPL 95 (119)
Q Consensus 82 ~~~~~~vhlv~~~~ 95 (119)
+|+ +|||+-.+.
T Consensus 70 ~g~--~l~L~gs~~ 81 (320)
T 3shq_A 70 PNF--KLMMVGSTE 81 (320)
T ss_dssp --C--EEEEECCCC
T ss_pred CCC--EEEEEccch
Confidence 999 999876544
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.33 E-value=5.6e-12 Score=82.98 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=69.5
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|.|+++..+|+.+ .|.+.+++++..|++.+ ++..+++ ++++||+|.|+.|.++.|+++|++. +++
T Consensus 15 ~~~i~ikV~~~~g~~i-~~~v~~~t~l~kl~~~y-----~~~~gi~--~~~~rf~fdG~~l~~~~Tp~dl~me----dgD 82 (93)
T 2d07_B 15 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAY-----CERQGLS--MRQIRFRFDGQPINETDTPAQLEME----DED 82 (93)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTCCTTTTTCC----TTE
T ss_pred CCeEEEEEECCCCCEE-EEEEccCCHHHHHHHHH-----HHHhCCC--ccceEEEECCEEcCCCCCHHHcCCC----CCC
Confidence 4689999998888654 79999999999999999 8888899 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCc
Q 033457 85 VTTMHVVIQPLV 96 (119)
Q Consensus 85 ~~~vhlv~~~~~ 96 (119)
+||++.+..+
T Consensus 83 --~Idv~~~q~G 92 (93)
T 2d07_B 83 --TIDVFQQQTG 92 (93)
T ss_dssp --EEEEEECC--
T ss_pred --EEEEEeeccC
Confidence 9999888654
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.28 E-value=1.1e-11 Score=77.81 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=64.1
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeE
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTT 87 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~ 87 (119)
|+|+++..+|+.+ .+.+.+++++..|++.. ++..+++ ++++||+|.|+.|.++.|+++|++. +|+ +
T Consensus 2 i~lkV~~~~g~~v-~~~v~~~t~l~kl~~~y-----~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~me----dgD--~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVV-QFKIKRHTPLSKLMKAY-----CERQGLS--MRQIRFRFDGQPINETDTPAQLEME----DED--T 67 (72)
T ss_dssp EEEEEECTTSCEE-EEEECTTSCTHHHHHHH-----HHHHTCC--TTTCEEEETTEECCTTCCTTTTTCC----TTE--E
T ss_pred EEEEEECCCCCEE-EEEECCCChHHHHHHHH-----HHHhCCC--cceEEEEECCEEcCCCCCHHHcCCC----CCC--E
Confidence 7889998888754 79999999999999999 7788899 8999999999999999999999999 999 8
Q ss_pred EEEE
Q 033457 88 MHVV 91 (119)
Q Consensus 88 vhlv 91 (119)
||++
T Consensus 68 Idv~ 71 (72)
T 1wm3_A 68 IDVF 71 (72)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.28 E-value=2.7e-12 Score=82.80 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=60.7
Q ss_pred EEEEEEeCCCceeEEEe-ecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEc--ceeeC---CCCCcccCCccccCC
Q 033457 8 VELKFRIYDGTDICHGT-YASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA--GKILE---NDRTLADSRITVGDL 81 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~-~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~--Gk~L~---D~~tL~~~~i~~~~~ 81 (119)
++|++|..+|+. .+. +++++||.+||+.| ++..++| +++|||+|. ||.|. |+.+|++|+|.
T Consensus 1 m~i~vr~~~G~~--~v~~l~~~~Tv~~Lk~~I-----~~~~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~---- 67 (86)
T 2kzr_A 1 WRVRCKAKGGTH--LLQGLSSRTRLRELQGQI-----AAITGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQ---- 67 (86)
T ss_dssp CCEEEEETTEEE--EECSCCTTCBHHHHHHHH-----HHHTCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCC----
T ss_pred CEEEEEcCCCCE--EeeecCCCCCHHHHHHHH-----HHHhCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCC----
Confidence 368999999953 367 99999999999999 7778899 999999997 48874 78899999999
Q ss_pred CCCeeEEEEEEc
Q 033457 82 PSGVTTMHVVIQ 93 (119)
Q Consensus 82 ~~~~~~vhlv~~ 93 (119)
+|+ +|||.-.
T Consensus 68 ~g~--~l~v~~~ 77 (86)
T 2kzr_A 68 SGD--MLIVEED 77 (86)
T ss_dssp TTC--EEECCCC
T ss_pred CCC--EEEEEeC
Confidence 999 8887644
No 92
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=7.2e-12 Score=84.27 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=71.5
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|+|+++..+|+.+ .|.|.+++++..|++.+ ++..+++ ++++||+|.|+.|.++.|+++|++. +++
T Consensus 22 ~~~I~IkVk~~~g~~i-~~kVk~~t~l~kL~~~y-----~ek~gi~--~~~~rf~FdG~~l~~~~Tp~dl~me----dgD 89 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAY-----CERQGLS--MRQIRFRFDGQPINETDTPAQLEME----DED 89 (104)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSCHHHHHHHH-----HHHHTCC--TTTSCEESSSSBCCTTSCTTTTTCC----TTE
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCChHHHHHHHH-----HHHhCCC--cceEEEEECCEEcCCCCCHHHcCCC----CCC
Confidence 4689999998888654 79999999999999999 7888899 8999999999999999999999999 999
Q ss_pred eeEEEEEEccCcc
Q 033457 85 VTTMHVVIQPLVA 97 (119)
Q Consensus 85 ~~~vhlv~~~~~~ 97 (119)
+||++.+..++
T Consensus 90 --~Idv~~~q~GG 100 (104)
T 1wz0_A 90 --TIDVFQQQTSG 100 (104)
T ss_dssp --EEEECCCCCCC
T ss_pred --EEEEEEeccCC
Confidence 99998887665
No 93
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.24 E-value=2e-11 Score=77.99 Aligned_cols=74 Identities=9% Similarity=0.115 Sum_probs=66.6
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|+|+++..+|+....+.+.+++++..|++.+ ++..+++ ++++||+|.|+.|.++.|+++|++. +++
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y-----~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~me----dgD 73 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHY-----EEAMGLS--GHKLSFFFDGTKLSGKELPADLGLE----SGD 73 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHH-----HHHHTCT--TCCCEEEETTEECCSCCCHHHHTCC----TTC
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHH-----HHHhCCC--cccEEEEECCEEcCCCCCHHHcCCC----CCC
Confidence 5679999999998633479999999999999999 7888899 8999999999999999999999999 999
Q ss_pred eeEEEEE
Q 033457 85 VTTMHVV 91 (119)
Q Consensus 85 ~~~vhlv 91 (119)
+||+.
T Consensus 74 --~Idv~ 78 (79)
T 3a4r_A 74 --LIEVW 78 (79)
T ss_dssp --EEEEE
T ss_pred --EEEEe
Confidence 88874
No 94
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.21 E-value=5.1e-11 Score=80.43 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=68.3
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|+|+++. +|+. ..|.+.+++++..|++.+ ++..+++ ++++||+|.|+.|.++.|+++|++. +++
T Consensus 29 ~~~I~IkV~~-~g~~-i~fkIk~tt~l~kL~~ay-----~ek~gi~--~~~~rF~FdG~rl~~~~Tp~dl~me----dgD 95 (106)
T 2eke_C 29 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAF-----AKRQGKE--MDSLRFLYDGIRIQADQTPEDLDME----DND 95 (106)
T ss_dssp CSEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTCCTTTTTCC----TTE
T ss_pred CCeEEEEEec-CCcE-EEEEeCCCCHHHHHHHHH-----HHHhCCC--cccEEEEECCeEcCCCCCHHHcCCC----CCC
Confidence 3679999998 8865 479999999999999999 7788898 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCc
Q 033457 85 VTTMHVVIQPLV 96 (119)
Q Consensus 85 ~~~vhlv~~~~~ 96 (119)
+|+++.+..+
T Consensus 96 --~Idv~~~q~G 105 (106)
T 2eke_C 96 --IIEAHREQIG 105 (106)
T ss_dssp --EEEEEECC--
T ss_pred --EEEEEeeccc
Confidence 9999887654
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.18 E-value=1.7e-11 Score=83.30 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=71.3
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
+.|.|+++..+|+.+ .|.+.+++++..|++.+ ++..+++ ++++||+|.|+.|.++.|+++|++. +++
T Consensus 25 ~~I~IkVk~~~g~~i-~fkVk~~t~l~kL~~ay-----~ek~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mE----DgD- 91 (110)
T 2k8h_A 25 ALVAVKVVNADGAEM-FFRIKSRTALKKLIDTY-----CKKQGIS--RNSVRFLFDGTPIDETKTPEELGME----DDD- 91 (110)
T ss_dssp CCEEEEEEETTSCCE-EEEECTTSSHHHHHHHH-----HHHHTCC--SSSCEEESSSCBCCSSSHHHHHHCS----SEE-
T ss_pred CeEEEEEECCCCCEE-EEEECCCChHHHHHHHH-----HHHhCCC--cccEEEEECCEEcCCCCCHHHcCCC----CCC-
Confidence 569999999998755 79999999999999999 7788899 8999999999999999999999999 999
Q ss_pred eEEEEEEccCcc
Q 033457 86 TTMHVVIQPLVA 97 (119)
Q Consensus 86 ~~vhlv~~~~~~ 97 (119)
+||++....++
T Consensus 92 -~Idv~~~q~Gg 102 (110)
T 2k8h_A 92 -VIDAMVEQTGG 102 (110)
T ss_dssp -EEEEECCCCCC
T ss_pred -EEEEEEcccCc
Confidence 99998887765
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.15 E-value=3.1e-10 Score=74.50 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=63.9
Q ss_pred ceeEEEEEEeC---CCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc------ee-e-CCCCCccc
Q 033457 5 EECVELKFRIY---DGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG------KI-L-ENDRTLAD 73 (119)
Q Consensus 5 ~~~i~ik~~~~---~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G------k~-L-~D~~tL~~ 73 (119)
...|+|+|+.+ +| ......+++++||.+||.+| +...++| +..|||+|.+ .. | +|..+|++
T Consensus 7 ~~~v~l~I~~~~~~~~-~~~e~~l~~~~TV~~LK~~i-----~~~~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~ 78 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPER-QILEKQLPDSMTVQKVKGLL-----SRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQF 78 (97)
T ss_dssp SCEEEEEEEESSCSSS-CCEEEEEETTSBHHHHHHHH-----HTTTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGG
T ss_pred CccEEEEEEecCCCCC-cEEEEECCCCCCHHHHHHHH-----HHHHCCC--hhHeEEEEEcCCCCceeeccCCCcccHhh
Confidence 56788888864 34 35578999999999999999 8889999 9999999973 22 5 68899999
Q ss_pred CCccccCCCCCeeEEEEEEccC
Q 033457 74 SRITVGDLPSGVTTMHVVIQPL 95 (119)
Q Consensus 74 ~~i~~~~~~~~~~~vhlv~~~~ 95 (119)
|++. +|+ +|||+...|
T Consensus 79 y~i~----~G~--~I~V~d~~p 94 (97)
T 1wjn_A 79 YSVE----NGD--CLLVRWSGP 94 (97)
T ss_dssp GTCC----TTC--EEEEECCSS
T ss_pred cCCC----CCC--EEEEEecCC
Confidence 9999 999 999877554
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.91 E-value=7.6e-09 Score=70.74 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=67.8
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|+|+++-.+|..+ .|.|.+++++..|++.. ++..+++ +.++||+|.|+.|.++.|.+++++. +++
T Consensus 38 ~~~I~LKV~~qdg~ev-~fkIk~tt~L~KLm~aY-----~er~Gl~--~~~irFlFDG~rI~~~~TP~dL~ME----DgD 105 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESY-----CQRQGVP--MNSLRFLFEGQRIADNHTPKELGME----EED 105 (115)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHH-----HHHHTCC--TTSEEEEETTEECCTTCCTTTTTCC----TTC
T ss_pred CCeEEEEEEcCCCCEE-EEEEccCChHHHHHHHH-----HHHhCCC--hhhEEEEECCeECCCCCCHHHcCCC----CCC
Confidence 3678999988888765 79999999999999999 7778888 9999999999999999999999999 999
Q ss_pred eeEEEEEEcc
Q 033457 85 VTTMHVVIQP 94 (119)
Q Consensus 85 ~~~vhlv~~~ 94 (119)
+|+++...
T Consensus 106 --~IdV~~~Q 113 (115)
T 3kyd_D 106 --VIEVYQEQ 113 (115)
T ss_dssp --EEEEEECC
T ss_pred --EEEEEeec
Confidence 88887664
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.3e-08 Score=75.50 Aligned_cols=80 Identities=11% Similarity=0.175 Sum_probs=70.9
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|+||++. +|.. ..|.|.+++++..|++.. ++..+++ +.++||+|.|+.|.++.|.+++++. +|+
T Consensus 27 ~~~I~LkV~~-~g~~-v~fkIk~~t~l~kL~~ay-----~er~Gi~--~~~~RF~FdG~rI~~~~TP~dL~ME----dgD 93 (200)
T 3pge_A 27 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAF-----AKRQGKE--MDSLRFLYDGIRIQADQTPEDLDME----DND 93 (200)
T ss_dssp CCCEEEEEEC-SSCE-EEEEECTTSCTHHHHHHH-----HHHHSSC--GGGEEEEETTEECCTTCCTTTTTCC----TTE
T ss_pred CCeEEEEEec-CCCE-EEEEEecCCHHHHHHHHH-----HHHhCCC--hhhEEEEECCEEcCCCCCHHHcCCC----CCC
Confidence 4568999975 6654 479999999999999999 8888999 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCcccc
Q 033457 85 VTTMHVVIQPLVAKK 99 (119)
Q Consensus 85 ~~~vhlv~~~~~~~~ 99 (119)
+|+++....++.+
T Consensus 94 --~Idv~~~q~gg~k 106 (200)
T 3pge_A 94 --IIEAHREQIGGGG 106 (200)
T ss_dssp --EEEEEECCSCCC-
T ss_pred --EEEEEeccCcCcC
Confidence 9999999887754
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3e-08 Score=73.41 Aligned_cols=79 Identities=11% Similarity=0.166 Sum_probs=70.2
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|+||+.. +|.. ..|.|.+++++..|++.. .+..+++ +.++||+|.|+.|.++.|.+++++. +++
T Consensus 55 ~e~InLKVk~-dG~e-V~FKIKrtTpL~KLmeAY-----cERqGL~--~~sIRFLFDGqRI~~ddTPeDLdME----DGD 121 (207)
T 3tix_A 55 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAF-----AKRQGKE--MDSLTFLYDGIEIQADQTPEDLDME----DND 121 (207)
T ss_dssp CCEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHH-----HHHTTCC--GGGSCEEETTEECCSSCCTTTTTCC----TTE
T ss_pred CCcEEEEEec-CCCE-EEEEEccCChHHHHHHHH-----HHHhCCC--cccEEEEECCeecCCCCCHHHcCCC----CCC
Confidence 4578999974 7765 479999999999999999 7788899 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCccc
Q 033457 85 VTTMHVVIQPLVAK 98 (119)
Q Consensus 85 ~~~vhlv~~~~~~~ 98 (119)
+|+++....++.
T Consensus 122 --tIDV~leQ~GG~ 133 (207)
T 3tix_A 122 --IIEAHREQIGGL 133 (207)
T ss_dssp --EEEECCCCCTTG
T ss_pred --EEEEEEeccCCC
Confidence 999988887764
No 100
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.34 E-value=2.8e-06 Score=56.07 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=42.3
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE 66 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~ 66 (119)
-|.+-.........+.+.++.||..+|++| ++++++| +.+|||||.|+.|.
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V-----~eqTgIp--~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELV-----YKQTKII--SSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHH-----HHHHCCC--GGGEEEEETTEEEC
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHH-----HHHhCCC--HHHHHHHhCCCccc
Confidence 344444444456778999999999999999 8899999 99999999998775
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.31 E-value=7.6e-08 Score=72.12 Aligned_cols=79 Identities=11% Similarity=0.175 Sum_probs=1.1
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|+||+ --+|.. ..|.|.+++....|++.. .+..+++ +.++||+|.|+.|.++.|.+++++. +|+
T Consensus 19 ~e~InLKV-~qdGse-V~FKIKrtTpL~KLM~AY-----cERqGLs--~~siRFLFDGqRI~dddTPadL~ME----DGD 85 (227)
T 3v7o_A 19 ETHINLKV-SDGSSE-IFFKIKKTTPLRRLMEAF-----AKRQGKE--MDSLRFLYDGIRIQADQTPEDLDME----DND 85 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCE-EEEEEccCChHHHHHHHH-----HHHhCCC--ccceEEEECCEecCCCCCHHHcCCC----CCC
Confidence 46788888 446654 479999999999999999 8888999 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCccc
Q 033457 85 VTTMHVVIQPLVAK 98 (119)
Q Consensus 85 ~~~vhlv~~~~~~~ 98 (119)
+|+++....++.
T Consensus 86 --tIDV~leQ~GG~ 97 (227)
T 3v7o_A 86 --IIEAHREQIGGL 97 (227)
T ss_dssp ------------CC
T ss_pred --EEEEEecccCCc
Confidence 899998888774
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.24 E-value=2.2e-07 Score=59.30 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=51.6
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEccee-----eCCCCCcccCCccccCC
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKI-----LENDRTLADSRITVGDL 81 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~-----L~D~~tL~~~~i~~~~~ 81 (119)
.+.||||..+|. .-+++++++|+.+|+++| ++..+++ +..+.|.++-.. +.++.+|++++|.
T Consensus 4 ~m~lRvrs~~G~--~Ri~v~~~~t~~~L~~~I-----~~~~~i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~---- 70 (80)
T 2pjh_A 4 SIIIRVQSPDGV--KRITATKRETAATFLKKV-----AKEFGFQ--NNGFSVYINRNKTGEITASSSKSLHLLKIK---- 70 (80)
T ss_dssp CCCCEEECSSEE--EECCCCSSCCHHHHHHHH-----HHHTCCC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCC----
T ss_pred cEEEEEECCCCC--EEEEcCCcChHHHHHHHH-----HHHcCCC--CCcceEEecCCCCCcccCCCCCCHHHcCCC----
Confidence 478999999995 347899999999999999 5555666 555554443332 3477899999999
Q ss_pred CCCeeEEEE
Q 033457 82 PSGVTTMHV 90 (119)
Q Consensus 82 ~~~~~~vhl 90 (119)
+|+ ++++
T Consensus 71 hGd--~l~l 77 (80)
T 2pjh_A 71 HGD--LLFL 77 (80)
T ss_dssp TTC--CEEC
T ss_pred CCC--EEEE
Confidence 888 5554
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.23 E-value=4.7e-06 Score=55.14 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=63.1
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
..+.|+|+++-.+|.....|.+.++++...|.... .+..+++ +..+||+|.|+.|..+.|..++++. ++
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY-----~~~~g~~--~~~vrF~FDG~rI~~~~TP~dLdME----Dg 90 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHY-----EEAMGLS--GRKLSFFFDGTKLSGRELPADLGME----SG 90 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHH-----HHHTTCS--SSCCEEEETTEECCSCSCHHHHTCC----TT
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHH-----HHHHCCC--cccEEEEECCEEcCCCCCHHHcCCC----CC
Confidence 36789999998888533468999999999999988 6666787 8899999999999999999999999 88
Q ss_pred CeeEEEE
Q 033457 84 GVTTMHV 90 (119)
Q Consensus 84 ~~~~vhl 90 (119)
+ +|-+
T Consensus 91 D--~IDv 95 (97)
T 2jxx_A 91 D--LIEV 95 (97)
T ss_dssp E--EEEE
T ss_pred C--EEEE
Confidence 8 5543
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.12 E-value=6.9e-06 Score=60.70 Aligned_cols=78 Identities=12% Similarity=0.189 Sum_probs=68.0
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|+||++- +|.. ..|.+..++....|++.. +++.+++ .+++||+|.|+.+.++.|..++... +++
T Consensus 19 ~~~i~ikv~~-~~~~-v~~~i~~~~~l~kl~~~y-----~~~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~e----d~d 85 (209)
T 3uf8_A 19 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAF-----AKRQGKE--MDSLRFLYDGIRIQADQTPEDLDME----DND 85 (209)
T ss_dssp CSEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHH-----HHHHTCC--GGGCEEEETTEECCTTCCTTTTTCC----TTE
T ss_pred CCcEEEEEEc-CCCE-EEEEEeeCCHHHHHHHHH-----HHhhCCC--hheEEEEECCEeccCCCChHHhhhc----ccc
Confidence 5789999985 5554 479999999999999999 8889999 9999999999999999999999999 889
Q ss_pred eeEEEEEEccCcc
Q 033457 85 VTTMHVVIQPLVA 97 (119)
Q Consensus 85 ~~~vhlv~~~~~~ 97 (119)
+|++.....++
T Consensus 86 --~I~~~~eq~Gg 96 (209)
T 3uf8_A 86 --IIEAHREQIGG 96 (209)
T ss_dssp --EEEEECSCTTC
T ss_pred --cchhhcccccc
Confidence 77777776654
No 105
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.11 E-value=1.8e-05 Score=50.56 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=59.6
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCC-cEEEEEcceeeCCCCCcccCCccccCCCCCe
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSIN-DVKLIHAGKILENDRTLADSRITVGDLPSGV 85 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~-~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~ 85 (119)
-|.+-+|.+.+.+. -+.+.++++|.+|-... ....+++ ++ .+||.|-|..|..+.++.+|.+. +++
T Consensus 9 ~~~~~~~~~~~~dl-~f~I~~~t~v~kLi~ay-----c~~~~I~--~~~~IrllFDGdRLdp~~tp~Dleme----D~D- 75 (82)
T 3goe_A 9 LITLLLRSSKSEDL-RLSIPVDFTVKDLIKRY-----CTEVKIS--FHERIRLEFEGEWLDPNDQVQSTELE----DED- 75 (82)
T ss_dssp EEEEEEEESSSCCE-EEEEETTSBHHHHHHHH-----HHHHTCC--CCTTCEEEETTEECCTTSBGGGSSCC----TTC-
T ss_pred HHHHhhhccCCCCe-EEEecCCCCHHHHHHHH-----HHHcCCC--cCceEEEEEcCcccCccCChhhhCCc----CCc-
Confidence 46677777766565 58999999999999888 6667788 76 99999999999999999999999 999
Q ss_pred eEEEEE
Q 033457 86 TTMHVV 91 (119)
Q Consensus 86 ~~vhlv 91 (119)
.|-++
T Consensus 76 -~IDvm 80 (82)
T 3goe_A 76 -QVSVV 80 (82)
T ss_dssp -EEEEE
T ss_pred -eeeee
Confidence 55554
No 106
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.09 E-value=1.3e-05 Score=51.06 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=56.3
Q ss_pred CCCceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--Ecceee---CCCCCcccCCc
Q 033457 2 GEGEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKIL---ENDRTLADSRI 76 (119)
Q Consensus 2 ~~~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L---~D~~tL~~~~i 76 (119)
++.+...+|+||++||+.+ .-.|..++||.+|.+-|.. .+.+ ....+|+ |-.|.| +.+.+|.++++
T Consensus 2 ~~~~~~~~i~iRlpdG~r~-~~~F~~~~tl~~v~~fv~~------~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL 72 (84)
T 3qx1_A 2 SHMEPVSKLRIRTPSGEFL-ERRFLASNKLQIVFDFVAS------KGFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKL 72 (84)
T ss_dssp --CCCEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHH------TTCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTC
T ss_pred CCCCCeEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHH------cCCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCC
Confidence 3457889999999999764 5689999999999999843 2234 6778887 456778 35689999999
Q ss_pred cccCCCCCeeEEEE
Q 033457 77 TVGDLPSGVTTMHV 90 (119)
Q Consensus 77 ~~~~~~~~~~~vhl 90 (119)
. +.. +++|
T Consensus 73 ~----p~a--~L~v 80 (84)
T 3qx1_A 73 F----PQE--TLFL 80 (84)
T ss_dssp C----SEE--EEEE
T ss_pred C----CCC--EEEE
Confidence 9 777 5554
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.04 E-value=5.8e-07 Score=71.79 Aligned_cols=81 Identities=11% Similarity=0.159 Sum_probs=1.1
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCC
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPS 83 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~ 83 (119)
..+.|+||++- +|+ ...|.+.++++...|++.. ++..+++ ++++|++|.|+.|.++.|.+++++. +|
T Consensus 18 ~~~~I~LKV~~-~g~-~v~FkIk~~t~l~kLm~aY-----~~r~G~~--~~~~rFlFdG~rI~~~~TP~~L~ME----Dg 84 (360)
T 3ix6_A 18 PETHINLKVSD-GSS-EIFFKIKKTTPLRRLMEAF-----AKRQGKE--MDSLRFLYDGIRIQADQTPEDLDME----DN 84 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCc-EEEEEEecCChHHHHHHHH-----HHHhCCC--cceEEEEECCeECCCCCChHHcCCC----cc
Confidence 35678888875 554 3478999999999999999 8888998 9999999999999999999999999 99
Q ss_pred CeeEEEEEEccCcccc
Q 033457 84 GVTTMHVVIQPLVAKK 99 (119)
Q Consensus 84 ~~~~vhlv~~~~~~~~ 99 (119)
+ +|+++.+..++++
T Consensus 85 D--~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 85 D--IIEAHREQIGGMR 98 (360)
T ss_dssp --------------CH
T ss_pred c--hhhhhhccCchHH
Confidence 9 8999988888764
No 108
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.80 E-value=9e-05 Score=48.83 Aligned_cols=73 Identities=11% Similarity=0.128 Sum_probs=61.8
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|+||++ .+|. ..-|.+-.++-...|.+.. +...+++ ++++|++|.|..+.++.|..++++. +++
T Consensus 19 ~~~IniKV~-~~g~-ev~FkIK~tt~l~KL~~aY-----c~r~gv~--~~sirFlfDG~rI~~~~TP~~L~me----D~D 85 (95)
T 2l76_A 19 PRLFPLKIR-CRAD-LVRLPLRMSEPLQSVVDHM-----ATHLGVS--PSRILLLFGETELSPTATPRTLKLG----VAD 85 (95)
T ss_dssp CCCEEEEEE-CSSS-EEEEEECSSSCTHHHHHHH-----HHHHTSC--GGGEEEEETTEECCTTSCHHHHTCC----SSC
T ss_pred CCeEEEEEE-cCCc-EEEEEEecCChHHHHHHHH-----HhhcCCC--hhhEEEEECCcCCCCCCCHhHcCCC----CCC
Confidence 455999999 4554 4468999999999999998 7778888 9999999999999999999999999 999
Q ss_pred eeEEEEEE
Q 033457 85 VTTMHVVI 92 (119)
Q Consensus 85 ~~~vhlv~ 92 (119)
+|-+++
T Consensus 86 --iID~~~ 91 (95)
T 2l76_A 86 --IIDCVV 91 (95)
T ss_dssp --EEEEEE
T ss_pred --EEEEEE
Confidence 555443
No 109
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.63 E-value=7.5e-06 Score=65.07 Aligned_cols=79 Identities=10% Similarity=0.161 Sum_probs=0.0
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.|.||++- +|. ...|.+.++++...|++.. ++..+++ ..++||+|.|+.|.++.|.+++++. +++
T Consensus 28 ~~~i~lkv~~-~~~-~~~~~i~~~~~~~~l~~~y-----~~~~g~~--~~~~~f~f~G~~i~~~~Tp~~l~me----d~d 94 (389)
T 4da1_A 28 ETHINLKVSD-GSS-EIFFKIKKTTPLRRLMEAF-----AKRQGKE--MDSLRFLYDGIRIQADQAPEDLDME----DND 94 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCc-EEEEEECCCChHHHHHHHH-----HHHhCCC--cceEEEEECCEEcCCCCCHHHcCCC----CCC
Confidence 4677888875 554 3469999999999999999 8888999 9999999999999999999999999 999
Q ss_pred eeEEEEEEccCccc
Q 033457 85 VTTMHVVIQPLVAK 98 (119)
Q Consensus 85 ~~~vhlv~~~~~~~ 98 (119)
+|+++....++.
T Consensus 95 --~i~~~~~q~gg~ 106 (389)
T 4da1_A 95 --IIEAHREQIGGE 106 (389)
T ss_dssp --------------
T ss_pred --Eeeeeecccccc
Confidence 888877777654
No 110
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.62 E-value=0.00017 Score=48.23 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=55.4
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--EcceeeC---CCCCcccCCccc
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKILE---NDRTLADSRITV 78 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L~---D~~tL~~~~i~~ 78 (119)
.....+|+||++||+.+ .-.|..++||.+|.+-|..+ .+.+ .....|+ |--|.|. .+.+|.++++.
T Consensus 10 ~~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~-----~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~- 80 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSSF-TNQFPSDAPLEEARQFAAQT-----VGNT--YGNFSLATMFPRREFTREDYKRRLLDLELA- 80 (109)
T ss_dssp CSCCEEEEEECSSSCEE-EEEECTTSBHHHHHHHHHHH-----HTTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCS-
T ss_pred CCCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhc-----cCCC--CCceEEEcCCCCcCCcccccCCCHHHCCCC-
Confidence 35679999999999754 56999999999999999543 2233 3455565 4566775 36899999999
Q ss_pred cCCCCCeeEEEEEEc
Q 033457 79 GDLPSGVTTMHVVIQ 93 (119)
Q Consensus 79 ~~~~~~~~~vhlv~~ 93 (119)
+.. ++++...
T Consensus 81 ---psa--~L~v~~~ 90 (109)
T 2dzk_A 81 ---PSA--SVVLLPA 90 (109)
T ss_dssp ---SEE--EEEEECC
T ss_pred ---Cce--EEEEEEC
Confidence 766 6655443
No 111
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.59 E-value=0.00025 Score=48.55 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=53.6
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--Ecceee--C-CCCCcccCCccc
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKIL--E-NDRTLADSRITV 78 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L--~-D~~tL~~~~i~~ 78 (119)
.+..++|+||+++|+.+ .-.|..++||.+|.+-|.. . +.+ .....|+ |-.|.| . .+.+|.++++.
T Consensus 40 ~~~~t~IqIRlPdG~rl-~~rF~~~~tl~~V~~fV~~-----~-~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~- 109 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKRE-QITLPEQAKLLALVKHVQS-----K-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLC- 109 (124)
T ss_dssp SSCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHH-----H-HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCC-
T ss_pred CCCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHh-----c-CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCC-
Confidence 46789999999999754 5699999999999999943 2 344 5667777 458888 3 36899999998
Q ss_pred cCCCCC
Q 033457 79 GDLPSG 84 (119)
Q Consensus 79 ~~~~~~ 84 (119)
+..
T Consensus 110 ---psa 112 (124)
T 1wj4_A 110 ---PQE 112 (124)
T ss_dssp ---SSB
T ss_pred ---Cce
Confidence 766
No 112
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.19 E-value=0.00079 Score=44.81 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=54.4
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--EcceeeC--CCCCcccCCccccC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKILE--NDRTLADSRITVGD 80 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L~--D~~tL~~~~i~~~~ 80 (119)
+..++|.||+++|+.+ .-.|..++||..|..-|..+ +.. ....+|+ |-.|.|. .+.||.++++.
T Consensus 21 ~~~~~IqiRlpdG~r~-~rrF~~~~tl~~v~~fv~~~------~~~--~~~f~L~t~fPrk~l~~d~~~TL~e~gL~--- 88 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVL-RRRFFKSWNSQVLLDWMMKV------GYH--KSLYRLSTSFPRRALEVEGGSSLEDIGIT--- 88 (109)
T ss_dssp SSEEEEEEECTTSCEE-EEEEESSSBTHHHHHHHHHH------TCC--TTTEEEECSSSCCBCCCCSSCBHHHHTCS---
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhc------CCC--CCCeEEEeCCCCcCCCCCCCCCHHHcCCC---
Confidence 5689999999999764 56899999999999998432 223 4667776 4467775 46899999999
Q ss_pred CCCCeeEEEEE
Q 033457 81 LPSGVTTMHVV 91 (119)
Q Consensus 81 ~~~~~~~vhlv 91 (119)
+.. +|+|.
T Consensus 89 -p~a--~L~Ve 96 (109)
T 2cr5_A 89 -VDT--VLNVE 96 (109)
T ss_dssp -SCE--EEEEE
T ss_pred -CCe--EEEEE
Confidence 766 65543
No 113
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.16 E-value=0.00065 Score=46.51 Aligned_cols=67 Identities=18% Similarity=0.373 Sum_probs=51.7
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE--EcceeeCC-CCCcccCCcc
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI--HAGKILEN-DRTLADSRIT 77 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi--~~Gk~L~D-~~tL~~~~i~ 77 (119)
.+...+|+||++||+.+ .-.|..++||.+|.+-|....| +.. .....|+ |-.|.|.| +.+|.++++.
T Consensus 49 ~~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~----~~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~ 118 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRL-VQKFNHSHRISDIRLFIVDARP----AMA--ATSFVLMTTFPNKELADENQTLKEANLL 118 (127)
T ss_dssp TSCCCCEEEEETTTTEE-EEECCSSCBHHHHHHHHHHHCS----GGG--TSCEEEEETTTTEECCSTTCBHHHHTCS
T ss_pred CCCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHhCc----CCC--CCCeEEecCCCCCCCCCCCCcHHHCCCc
Confidence 46679999999999765 5789999999999999955433 122 4566666 45778864 6899999998
No 114
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.13 E-value=0.00035 Score=48.32 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=51.6
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCC---------------------------------C--
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKS---------------------------------I-- 53 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~---------------------------------~-- 53 (119)
.|+|+++||+ +..+.++.+.+|.+++..|.. ..+++.. .
T Consensus 13 ~LkV~llDg~-~ktl~VD~S~~V~~lv~~Ic~-----kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 86 (128)
T 2kc2_A 13 PLKIRMLDGT-VKTIMVDDSKTVTDMLMTICA-----RIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEK 86 (128)
T ss_dssp EEEEECTTSC-EEEEEEEECSSHHHHHHHHHH-----HHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCS
T ss_pred cEEEEcCCCC-EEEEEeCCCcCHHHHHHHHHH-----HhCCCCcccccccccccccccccCchhhccccccccchhHHHH
Confidence 5899999995 678999999999999999954 3333311 0
Q ss_pred CcEEEEE--cceeeCCCCCcccCCccccCCCCCeeEEEE
Q 033457 54 NDVKLIH--AGKILENDRTLADSRITVGDLPSGVTTMHV 90 (119)
Q Consensus 54 ~~qrLi~--~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhl 90 (119)
..+||-. .+..|+++.+|.++||. +++ ++-|
T Consensus 87 ~k~kL~~dd~~~WLD~srtL~EQGI~----e~~--tllL 119 (128)
T 2kc2_A 87 LKQKLHTDDELNWLDHGRTLREQGVE----EHE--TLLL 119 (128)
T ss_dssp SCCSCCCSSSEEEECSSSCHHHHTCC----TTS--EEEE
T ss_pred HHHHhcccCCCCcccCCCcHHHcCCC----CCC--EEEE
Confidence 1344422 24788999999999999 888 5544
No 115
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.79 E-value=0.0057 Score=38.97 Aligned_cols=71 Identities=11% Similarity=0.221 Sum_probs=54.9
Q ss_pred eeEEEEEEeC--CCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCC-CcEEEEEcceeeCCCCCcccCCccccCCC
Q 033457 6 ECVELKFRIY--DGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI-NDVKLIHAGKILENDRTLADSRITVGDLP 82 (119)
Q Consensus 6 ~~i~ik~~~~--~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~-~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~ 82 (119)
..|+|++.+. .|+ ...+.++...||.+|++.++... ....+... -++|+.-.|.+|.++..|++|+|. +
T Consensus 3 ~yI~ITidl~~y~~~-~~DLRIP~~~tvK~Li~~l~ea~---~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~It----n 74 (81)
T 2bps_A 3 SYIDITIDLKHYNGS-VFDLRLSDYHPVKKVIDIAWQAQ---SVSMPPREGHWIRVVNKDKVFSGECKLSDCGIT----N 74 (81)
T ss_dssp CEEEEEEECTTTTCC-EEEEEEETTSBTTHHHHHHHHHS---CCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCC----T
T ss_pred cEEEEEEEeeccCCc-eEEEECCCchhHHHHHHHHHHHh---CCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcC----C
Confidence 4688888883 453 56889999999999999994421 11222122 589999999999999999999999 8
Q ss_pred CC
Q 033457 83 SG 84 (119)
Q Consensus 83 ~~ 84 (119)
|+
T Consensus 75 GD 76 (81)
T 2bps_A 75 GD 76 (81)
T ss_dssp TC
T ss_pred CC
Confidence 88
No 116
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.78 E-value=0.01 Score=46.40 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=54.3
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE------cceeeCCCCCcccCCcccc
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH------AGKILENDRTLADSRITVG 79 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~------~Gk~L~D~~tL~~~~i~~~ 79 (119)
..+.+|+.+.+ .+..+.|++++||.++-..|+.+.|+.. ..+ .++--|.- .|+-|+++++|..|++.
T Consensus 2 ~~~~~~~~~~~--~~~~~~f~~~~~v~~~~~~i~e~~~~~~-~~~--~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~-- 74 (371)
T 3ivf_A 2 VALSLKISIGN--VVKTMQFEPSTMVYDACRMIRERIPEAL-AGP--PNDFGLFLSDDDPKKGIWLEAGKALDYYMLR-- 74 (371)
T ss_dssp CCEEEEEEETT--EEEEEEECTTCBHHHHHHHHHTTCGGGG-SSC--GGGEEEEECCSSGGGCEECCTTSBGGGGTCC--
T ss_pred ccEEEEEEecc--eeEEEEECCCCCHHHHHHHHHHhccccc-CCC--HHHCeEeccCCCCCcCEeccCCCCHHHhCCC--
Confidence 35889999983 4678999999999999999977766531 122 56666666 47789889999999999
Q ss_pred CCCCC
Q 033457 80 DLPSG 84 (119)
Q Consensus 80 ~~~~~ 84 (119)
++.
T Consensus 75 --~~~ 77 (371)
T 3ivf_A 75 --NGD 77 (371)
T ss_dssp --TTC
T ss_pred --CCc
Confidence 666
No 117
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.24 E-value=0.012 Score=38.28 Aligned_cols=75 Identities=8% Similarity=0.016 Sum_probs=60.7
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEE
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTM 88 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~v 88 (119)
.|.++.++|... .+.+.|++++.++-+.- -.+.++. +++-.|.|.+|.|+=+.++.-.|++ ++. .+
T Consensus 11 ~v~Vl~~n~rr~-~VKvtp~t~L~~VL~ea-----C~K~gl~--~~~~~Lkh~~k~lDLSlpfRlsgLp----nnA--kL 76 (90)
T 2al3_A 11 AVSVLAPNGRRH-TVKVTPSTVLLQVLEDT-----CRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLP----NNA--KL 76 (90)
T ss_dssp CEEEECTTSCEE-EECCCTTSBHHHHHHHH-----HHHTTCC--GGGCEEEETTEEESSSCBHHHHCCC----SSC--EE
T ss_pred EEEEEcCCCcEE-EEEECCCCCHHHHHHHH-----HHHhCCC--hhhCeEEeCCEeccccceeEecCCC----CCC--EE
Confidence 788889999654 78999999999986666 4456777 8899999999999888888888999 899 77
Q ss_pred EEEEccCcc
Q 033457 89 HVVIQPLVA 97 (119)
Q Consensus 89 hlv~~~~~~ 97 (119)
-|+......
T Consensus 77 ELv~~s~s~ 85 (90)
T 2al3_A 77 EMVPVSRSR 85 (90)
T ss_dssp EEECSSSCC
T ss_pred EEEEccCCC
Confidence 776655443
No 118
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.88 E-value=0.048 Score=36.63 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=50.7
Q ss_pred ceeEEEEEEeCC-CceeEEEeecCCccHHHHHHHcccccCCCc--cCCCCCCCcEEEEE----cceeeCCCC--------
Q 033457 5 EECVELKFRIYD-GTDICHGTYASSTTVATLKQQLVAEWPQGK--TITPKSINDVKLIH----AGKILENDR-------- 69 (119)
Q Consensus 5 ~~~i~ik~~~~~-g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~--~~~p~~~~~qrLi~----~Gk~L~D~~-------- 69 (119)
-.++.|.+...+ +.+..++.+-.-+||.++|++|....=.+. ...| +++++.|-+ +|++|.|..
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP-~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~ 87 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWP-RPDSVVLEWRPGSTAQILSDLDLTSQREGR 87 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCC-CCCceeeEEecCCCCccccccCccceecCc
Confidence 356777777764 223456777789999999999975321110 1112 357788877 356786632
Q ss_pred -----CcccCCccccCCCCCeeEEEEEE
Q 033457 70 -----TLADSRITVGDLPSGVTTMHVVI 92 (119)
Q Consensus 70 -----tL~~~~i~~~~~~~~~~~vhlv~ 92 (119)
||+.|+|+ +|. +|-|+.
T Consensus 88 wkrLNTL~HY~V~----dga--tl~l~~ 109 (111)
T 4e71_A 88 WKRVNTLMHYNVR----DGA--TLILSK 109 (111)
T ss_dssp CCCCCBHHHHTCC----TTC--EEEEEE
T ss_pred ceEecchhhcCCC----CCC--EEEEEe
Confidence 45678999 888 665543
No 119
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.04 E-value=0.2 Score=34.76 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=51.6
Q ss_pred eeEEEEEEeCCC-----ceeEEEeecCCccHHHHHHHcccccCCC--ccCCCCCCCcEEEEE----cce-eeCCCC----
Q 033457 6 ECVELKFRIYDG-----TDICHGTYASSTTVATLKQQLVAEWPQG--KTITPKSINDVKLIH----AGK-ILENDR---- 69 (119)
Q Consensus 6 ~~i~ik~~~~~g-----~~~~~~~~~~~~TV~~LK~~I~~~wp~~--~~~~p~~~~~qrLi~----~Gk-~L~D~~---- 69 (119)
.++.|.+....| ....++.+-.-+||.++|++|...-=.+ ....| +++++-|-+ +|+ +|.|..
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP-~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCC-CGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCC-CccceeEEEecCCcCceEeeccCCccc
Confidence 567777776632 2345788889999999999996420000 01111 357777766 455 476642
Q ss_pred ---------CcccCCccccCCCCCeeEEEEEEccC
Q 033457 70 ---------TLADSRITVGDLPSGVTTMHVVIQPL 95 (119)
Q Consensus 70 ---------tL~~~~i~~~~~~~~~~~vhlv~~~~ 95 (119)
||+.|+|+ +|. +|-|+.+..
T Consensus 102 ~~~~wkrLNTL~HY~V~----Dga--~l~l~~~~~ 130 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVP----DGA--TVALVPCLT 130 (138)
T ss_dssp EETTEEECCBHHHHTCC----TTC--EEEEEEC--
T ss_pred ccCCceeecchhccCCC----CCC--EEEEEECCC
Confidence 77889999 999 776665543
No 120
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.66 E-value=0.26 Score=33.75 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=51.0
Q ss_pred eeEEEEEEeCC-CceeEEEeecCCccHHHHHHHcccccCCCc--cCCCCCCCcEEEEE----cce-eeCCC---------
Q 033457 6 ECVELKFRIYD-GTDICHGTYASSTTVATLKQQLVAEWPQGK--TITPKSINDVKLIH----AGK-ILEND--------- 68 (119)
Q Consensus 6 ~~i~ik~~~~~-g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~--~~~p~~~~~qrLi~----~Gk-~L~D~--------- 68 (119)
.++.+.+...+ +....++.+-.-+||.++|++|....=.+. ...| +++++.|-+ .|+ +|.|.
T Consensus 3 ~~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 81 (127)
T 3h6n_A 3 KPRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWP-RAEDVDLEWFASSTQSYILRDLDDTSVVEDG 81 (127)
T ss_dssp CEEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSC-CGGGEEEEEECSSSCEEECCSSSTTSCEETT
T ss_pred eEEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCC-CCcccceEEecCCCCceEeecCCCcceecCc
Confidence 45566665432 223456778789999999999975421111 1122 367888887 344 47653
Q ss_pred ----CCcccCCccccCCCCCeeEEEEEEc
Q 033457 69 ----RTLADSRITVGDLPSGVTTMHVVIQ 93 (119)
Q Consensus 69 ----~tL~~~~i~~~~~~~~~~~vhlv~~ 93 (119)
.||+.|+|+ +|. +|-|+.+
T Consensus 82 ~krLNTL~HY~V~----dga--tv~l~~~ 104 (127)
T 3h6n_A 82 RKKLNTLAHYKIP----EGA--SLAMSLI 104 (127)
T ss_dssp EECCCBTTTTTCC----TTC--EEEEEEC
T ss_pred eeEeccccccCCC----CCC--EEEEEEc
Confidence 256789999 999 7766544
No 121
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=94.65 E-value=0.48 Score=30.18 Aligned_cols=78 Identities=9% Similarity=0.085 Sum_probs=57.3
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEccee--eCCCCCcccCCccccCCCC
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKI--LENDRTLADSRITVGDLPS 83 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~--L~D~~tL~~~~i~~~~~~~ 83 (119)
..+-|.-+|-+.=-...+.++..+|+.++-+++... .-.....+.+.-+|..++|+. |.++.++++.||. |-
T Consensus 2 a~~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h--~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~----Pm 75 (84)
T 3ge3_C 2 SAFPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYH--CVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLN----PT 75 (84)
T ss_dssp CEEEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHT--TBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCC----TT
T ss_pred cccceEEEeccccEEEEEEecCCCcHHHHHHHHhhh--hcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCC----cc
Confidence 346677777764345578999999999999998432 112234445679999999997 9999999999999 76
Q ss_pred CeeEEEEE
Q 033457 84 GVTTMHVV 91 (119)
Q Consensus 84 ~~~~vhlv 91 (119)
. .+-++
T Consensus 76 e--~vev~ 81 (84)
T 3ge3_C 76 E--VIDVV 81 (84)
T ss_dssp C--EEEEE
T ss_pred e--EEEEE
Confidence 6 44443
No 122
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=92.67 E-value=0.34 Score=32.70 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=49.7
Q ss_pred eeEEEEEEeCCC--ceeEEEeecCCccHHHHHHHcccccCCC--ccCCCCCCCcEEEEE-cc---e-eeCCCC-------
Q 033457 6 ECVELKFRIYDG--TDICHGTYASSTTVATLKQQLVAEWPQG--KTITPKSINDVKLIH-AG---K-ILENDR------- 69 (119)
Q Consensus 6 ~~i~ik~~~~~g--~~~~~~~~~~~~TV~~LK~~I~~~wp~~--~~~~p~~~~~qrLi~-~G---k-~L~D~~------- 69 (119)
.++.|.+...+| ....++.+-.-+||.++|++|....=.+ ....| +++++.|-+ .| + +|.|..
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRP-KAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCC-CCCceeEEEecCCCCceEeecCCCccEecC
Confidence 456777666543 2234677778899999999997532111 11122 357787777 33 4 466522
Q ss_pred ------CcccCCccccCCCCCeeEEEEEEcc
Q 033457 70 ------TLADSRITVGDLPSGVTTMHVVIQP 94 (119)
Q Consensus 70 ------tL~~~~i~~~~~~~~~~~vhlv~~~ 94 (119)
||+.|+|+ +|. +|-|+.+.
T Consensus 91 ~wkrLNTL~HY~V~----dga--tl~l~~~~ 115 (117)
T 4e74_A 91 DWKRLNTLAHYQVP----DGS--VVALVSKQ 115 (117)
T ss_dssp -CCCCCBHHHHTCC----TTC--EEEEEECC
T ss_pred cceEeccccccCCC----CCC--EEEEEeCC
Confidence 45678899 898 77665543
No 123
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=91.34 E-value=1.8 Score=27.45 Aligned_cols=70 Identities=6% Similarity=0.022 Sum_probs=50.1
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCC-CcEEEEEcc--eeeCCCCCcccCCccccCCCCC
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSI-NDVKLIHAG--KILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~-~~qrLi~~G--k~L~D~~tL~~~~i~~~~~~~~ 84 (119)
-|.-+|-+.=-...+.++.++|+.++-+++... .-...+++.+ .-+|..+.| +.|..+.|+++.+|. |-.
T Consensus 3 Pl~~~F~gDFV~~LV~VDt~dTmdqVA~kvA~H--sVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~----P~e 75 (83)
T 2inc_C 3 PIMSNFERDFVIQLVPVDTEDTMDQVAEKCAYH--SINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLR----PTE 75 (83)
T ss_dssp EEEEEETTCSBEEEEEECTTCBHHHHHHHHHTT--TBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCC----TTC
T ss_pred ceeEEeccccEEEEEEecCCCcHHHHHHHHhhh--hcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCC----Cce
Confidence 344555553334568899999999999998432 1112233234 479999999 999999999999999 766
No 124
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.81 E-value=1.9 Score=31.74 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=45.7
Q ss_pred EEEEEEeCCCc-eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCC-cEEEEE-----cceeeCC-CCCcccCCcccc
Q 033457 8 VELKFRIYDGT-DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSIN-DVKLIH-----AGKILEN-DRTLADSRITVG 79 (119)
Q Consensus 8 i~ik~~~~~g~-~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~-~qrLi~-----~Gk~L~D-~~tL~~~~i~~~ 79 (119)
+.++|...+.. ......++..+||.+|++.+ ....+++ .+ ..||-. ....|.| +.+|.++++.
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~-----~~~~~i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~-- 210 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEM-----RKLFNIP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLY-- 210 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHH-----HHHTTCC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCC--
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHH-----HHHhCCC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCC--
Confidence 34444443321 22346779999999999999 6667787 54 688865 2336665 5899999999
Q ss_pred CCCCC
Q 033457 80 DLPSG 84 (119)
Q Consensus 80 ~~~~~ 84 (119)
++.
T Consensus 211 --~~Q 213 (231)
T 3jyu_A 211 --QGQ 213 (231)
T ss_dssp --TTE
T ss_pred --CCC
Confidence 777
No 125
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=90.68 E-value=2 Score=36.47 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=51.2
Q ss_pred eeEEEEEEeCCC-----ceeEEEeecCCccHHHHHHHcccc-cCC-CccCCCCCCCcEEEEE----cce-eeCCCC----
Q 033457 6 ECVELKFRIYDG-----TDICHGTYASSTTVATLKQQLVAE-WPQ-GKTITPKSINDVKLIH----AGK-ILENDR---- 69 (119)
Q Consensus 6 ~~i~ik~~~~~g-----~~~~~~~~~~~~TV~~LK~~I~~~-wp~-~~~~~p~~~~~qrLi~----~Gk-~L~D~~---- 69 (119)
.++.+.+....| ....++.+-.-+||.++|++|... +.. .....| +++++.|-+ .|+ +|.|..
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCCcceEEeeCCCCceeecccCccce
Confidence 466777776533 233467788899999999999642 100 011122 357777777 345 576644
Q ss_pred ---------CcccCCccccCCCCCeeEEEEEEcc
Q 033457 70 ---------TLADSRITVGDLPSGVTTMHVVIQP 94 (119)
Q Consensus 70 ---------tL~~~~i~~~~~~~~~~~vhlv~~~ 94 (119)
||+.|+|+ +|. +|-|+.+.
T Consensus 335 ~~~~wkrLNTL~HY~V~----dga--~v~L~p~~ 362 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVP----DGA--TVALVPCL 362 (644)
T ss_dssp EETTEEECCBTTTTTCC----TTC--EEEEEEC-
T ss_pred ecCcceeecchhhcCCC----CCc--EEEEEecc
Confidence 67899999 999 66665543
No 126
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=90.35 E-value=1.5 Score=31.95 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=45.7
Q ss_pred EEEEEEeCCCc-eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCC-cEEEEE---cce--eeCC-CCCcccCCcccc
Q 033457 8 VELKFRIYDGT-DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSIN-DVKLIH---AGK--ILEN-DRTLADSRITVG 79 (119)
Q Consensus 8 i~ik~~~~~g~-~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~-~qrLi~---~Gk--~L~D-~~tL~~~~i~~~ 79 (119)
+.++|...+.. ....+.++..+||.+|++.+ ....+++ .+ ..||-. .++ .|.| +.+|.++++.
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~-----~~~~~i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~-- 198 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEI-----RKIFSIP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLY-- 198 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHH-----HHHTTCC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCC--
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHH-----HHHhCCC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCC--
Confidence 34455444422 23457789999999999999 6667787 54 677753 333 5665 5799999999
Q ss_pred CCCCC
Q 033457 80 DLPSG 84 (119)
Q Consensus 80 ~~~~~ 84 (119)
++.
T Consensus 199 --~~Q 201 (217)
T 4a3p_A 199 --QGQ 201 (217)
T ss_dssp --TTC
T ss_pred --CCC
Confidence 888
No 127
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=90.08 E-value=3.1 Score=28.34 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=46.9
Q ss_pred eEEEEEEe---CCC-----ceeEEEeecCCccHHHHHHHcccccCCCccCCCC--CCCcEEEEE----cceeeCCCC---
Q 033457 7 CVELKFRI---YDG-----TDICHGTYASSTTVATLKQQLVAEWPQGKTITPK--SINDVKLIH----AGKILENDR--- 69 (119)
Q Consensus 7 ~i~ik~~~---~~g-----~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~--~~~~qrLi~----~Gk~L~D~~--- 69 (119)
++.|.+.+ ..| ....++.+-.-+||.++|++|....=. ..+.|- .+.++.|-+ .|++|.|..
T Consensus 19 tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk-~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 19 TVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLS-KNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp EEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHH-HHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhc-cCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 34888887 432 234567788899999999999753110 012221 256777776 234565421
Q ss_pred -----------CcccCCccccCCCCCeeEEEEE
Q 033457 70 -----------TLADSRITVGDLPSGVTTMHVV 91 (119)
Q Consensus 70 -----------tL~~~~i~~~~~~~~~~~vhlv 91 (119)
||+.|+|+ +|. +|-++
T Consensus 98 ~~~e~~wkrLNTL~HY~V~----Dga--tlal~ 124 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEIS----NGS--TIKVF 124 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCC----TTC--EEEEE
T ss_pred eEecCCeeEeccccccCCC----CCC--EEEEe
Confidence 34567888 888 65443
No 128
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=89.04 E-value=2 Score=31.89 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=52.5
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEc---ce--eeCCCCCcccCCccccCC
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA---GK--ILENDRTLADSRITVGDL 81 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~---Gk--~L~D~~tL~~~~i~~~~~ 81 (119)
+|.|+|.++||+ ..+.+++++|+.+|=+.| ....++. .....=|.|. |. .|+.+..|.+.++.
T Consensus 1 ~i~~~V~l~d~~--~~~~v~~~tt~~el~~~v-----~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~---- 68 (294)
T 1ef1_A 1 TISVRVTTMDAE--LEFAIQPNTTGKQLFDQV-----VKTIGLR-EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVR---- 68 (294)
T ss_dssp CEEEEEEETTEE--EEEEECTTCBHHHHHHHH-----HHHHTCC-CGGGEEEEEEBTTSCEEECCSSSBGGGSCBC----
T ss_pred CEEEEEEECCce--EEEEECCCCcHHHHHHHH-----HHHcCCC-CcceeEEEEECCCCceeecccccCHHhhccC----
Confidence 478999999983 469999999999999999 5555665 2355666653 32 56667777776554
Q ss_pred CCCeeEEEEEEc
Q 033457 82 PSGVTTMHVVIQ 93 (119)
Q Consensus 82 ~~~~~~vhlv~~ 93 (119)
.+.+..+++.++
T Consensus 69 ~~~~~~l~fr~k 80 (294)
T 1ef1_A 69 KESPLLFKFRAK 80 (294)
T ss_dssp CCSSEEEEEEES
T ss_pred CCCCEEEEEEEE
Confidence 455456666655
No 129
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=88.69 E-value=4.3 Score=34.41 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=51.6
Q ss_pred eeEEEEEEeCCC--ceeEEEeecCCccHHHHHHHcccc-cC-CCccCCCCCCCcEEEEE----cce-eeCCC--------
Q 033457 6 ECVELKFRIYDG--TDICHGTYASSTTVATLKQQLVAE-WP-QGKTITPKSINDVKLIH----AGK-ILEND-------- 68 (119)
Q Consensus 6 ~~i~ik~~~~~g--~~~~~~~~~~~~TV~~LK~~I~~~-wp-~~~~~~p~~~~~qrLi~----~Gk-~L~D~-------- 68 (119)
.++.|.+...+| ....++.+-.-+||.++|++|... +. ......| +++++.|-+ .|+ +|.|.
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRP-KAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCccceeEeeCCCCceeeccCCccccccC
Confidence 466777776653 233467788899999999999642 10 0011122 367777776 344 46552
Q ss_pred -----CCcccCCccccCCCCCeeEEEEEEcc
Q 033457 69 -----RTLADSRITVGDLPSGVTTMHVVIQP 94 (119)
Q Consensus 69 -----~tL~~~~i~~~~~~~~~~~vhlv~~~ 94 (119)
.||+.|+|+ +|. +|-|+.+.
T Consensus 311 ~wkrLNTL~HY~V~----Dga--~v~L~p~~ 335 (627)
T 3ig3_A 311 DWKRVNSLAHYQVT----DGS--LVALVPKQ 335 (627)
T ss_dssp TEEECCBTTTTTCC----TTC--EEEEEEC-
T ss_pred ceeEecchhhcCCC----CCc--eEEEEecc
Confidence 256889999 999 77666654
No 130
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=87.78 E-value=2.8 Score=34.93 Aligned_cols=76 Identities=8% Similarity=0.013 Sum_probs=54.8
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc-----eeeCCCCCcccCCccccC
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG-----KILENDRTLADSRITVGD 80 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G-----k~L~D~~tL~~~~i~~~~ 80 (119)
..|.++|.++||+ ..+.+++++|+.+|=+.| ....++. .....=|.|.. ..|+.+.+|.+.++.
T Consensus 3 k~i~v~V~llDgt--~e~~vd~~tt~~ell~~V-----~~~LgL~-e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~--- 71 (575)
T 2i1j_A 3 KSMNVRVTTMDAE--LEFAIQQTTTGKQLFDQV-----VKTIGLR-EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVK--- 71 (575)
T ss_dssp CEEEEEEECSSCE--EEEEEETTCBHHHHHHHH-----HHHHTCC-CGGGEEEEEEBTTSCEEECCTTSBGGGSCBC---
T ss_pred ceEEEEEEeCCCe--EEEEECCCCCHHHHHHHH-----HHHcCCC-CccceeEEEEecCcchhHhhccccHHHhccc---
Confidence 4789999999993 469999999999999999 5555665 24566666642 366667777776555
Q ss_pred CCCCeeEEEEEEc
Q 033457 81 LPSGVTTMHVVIQ 93 (119)
Q Consensus 81 ~~~~~~~vhlv~~ 93 (119)
.+.+..+++.++
T Consensus 72 -~~~~~~L~FRvk 83 (575)
T 2i1j_A 72 -KENPLQFKFRAK 83 (575)
T ss_dssp -CCSSEEEEEEES
T ss_pred -CCCCeEEEEEEE
Confidence 555556776665
No 131
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=87.66 E-value=3.1 Score=26.21 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=43.0
Q ss_pred eEEEEEEeCC------CceeEEEeecCCccHHHHHHHcccccCCCccCCC----CCCCcEEEEEcceeeCCCCCcccCCc
Q 033457 7 CVELKFRIYD------GTDICHGTYASSTTVATLKQQLVAEWPQGKTITP----KSINDVKLIHAGKILENDRTLADSRI 76 (119)
Q Consensus 7 ~i~ik~~~~~------g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p----~~~~~qrLi~~Gk~L~D~~tL~~~~i 76 (119)
.++|++++-. |.....+++....||.+|.+.+...+|.-...+- .....+.+.-+|+.... +..+
T Consensus 9 ~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L 83 (98)
T 1vjk_A 9 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL 83 (98)
T ss_dssp CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred cEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCC
Confidence 4567777653 4333457777789999999999766553222110 00245778888887753 4456
Q ss_pred cccCCCCC
Q 033457 77 TVGDLPSG 84 (119)
Q Consensus 77 ~~~~~~~~ 84 (119)
. +|+
T Consensus 84 ~----dGD 87 (98)
T 1vjk_A 84 K----DGD 87 (98)
T ss_dssp C----TTC
T ss_pred C----CCC
Confidence 6 777
No 132
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=87.59 E-value=1.2 Score=27.30 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=36.2
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCC
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDR 69 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~ 69 (119)
+|++++.+. ....++++...||++|=+.+ ++| +...-+..+|+++.-+.
T Consensus 2 ~v~Vkl~g~-~~~~~ev~~g~Tv~dLL~~L---------gl~--~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVVGE-ETSEVAVDDDGTYADLVRAV---------DLS--PHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECSSS-SEEEEECSTTCSHHHHHHTT---------CCC--SSCCCEECCCCCCCTTS
T ss_pred EEEEEEeCc-cceeEEcCCCCcHHHHHHHc---------CCC--cceEEEEECCEECCHHH
Confidence 567777743 45568999999999998877 566 66666778888885444
No 133
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=87.29 E-value=3.5 Score=30.96 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=54.4
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE--cce--eeCCCCCcccCCccccC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH--AGK--ILENDRTLADSRITVGD 80 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~--~Gk--~L~D~~tL~~~~i~~~~ 80 (119)
...+.++|.+.|| . ..+.+++++|+.+|=+.| ....++.+ .+..-|.| .|. .|+.+..|.+..+.
T Consensus 20 ~~~~~~~V~lldg-~-~~~~v~~~t~~~el~~~v-----~~~l~L~e-~~~FgL~~~~~~~~~wL~~~~~i~~q~~~--- 88 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-E-MEFNCEMKWKGKDLFDLV-----CRTLGLRE-TWFFGLQYTIKDTVAWLKMDKKVLDHDVS--- 88 (314)
T ss_dssp -CEEEEEEECSSC-E-EEEEEETTCBHHHHHHHH-----HHHHTCCC-GGGEEEEEEETTEEEECCTTSBGGGSSCC---
T ss_pred CCeeEEEEEeCCc-e-EEEEeCCCCcHHHHHHHH-----HHHhCCCC-CccceEEEEeCCcCeeCCCccCHHHcCCC---
Confidence 4678999999999 4 469999999999999999 55556652 45566665 333 47777788876555
Q ss_pred CCCCeeEEEEEEc
Q 033457 81 LPSGVTTMHVVIQ 93 (119)
Q Consensus 81 ~~~~~~~vhlv~~ 93 (119)
.+.+..+++.++
T Consensus 89 -~~~~~~l~fr~k 100 (314)
T 1h4r_A 89 -KEEPVTFHFLAK 100 (314)
T ss_dssp -CSSSEEEEEEES
T ss_pred -CCCCEEEEEEEE
Confidence 445456666555
No 134
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=86.04 E-value=1.1 Score=29.76 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=31.0
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccc
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAE 41 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~ 41 (119)
+.+.|.+.+++|- ...+.++.+.|+.++|+.+|.+
T Consensus 18 ~~v~v~~LlPnGi-~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 18 PRILVECLLPNGM-IVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp SEEEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHH
T ss_pred CcEEEEEEcCcEE-EEEEEeeccccHHHHHHHHHHH
Confidence 6799999999995 4578999999999999999765
No 135
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=84.98 E-value=1.2 Score=28.37 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=22.8
Q ss_pred EEEEeCCCceeEEEeec-CCccHHHHHHHccc
Q 033457 10 LKFRIYDGTDICHGTYA-SSTTVATLKQQLVA 40 (119)
Q Consensus 10 ik~~~~~g~~~~~~~~~-~~~TV~~LK~~I~~ 40 (119)
|.|+|.+.++...+.|+ ...||.+||+.|..
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~ 40 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMG 40 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHH
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHH
Confidence 55555666566667776 66899999999954
No 136
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=84.88 E-value=4.9 Score=25.66 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=49.5
Q ss_pred EEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEEEEccCcc
Q 033457 21 CHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVVIQPLVA 97 (119)
Q Consensus 21 ~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv~~~~~~ 97 (119)
..-.++=...+..||+.+ +...+++ -+.-.+..++..|+++++|.+-.++ -...+.+++-+++..+
T Consensus 5 i~qhmDI~epL~~Lk~LL-----e~Rl~i~--L~~y~f~LQd~~L~~~k~LvdQcVq----geGlVQinvqik~~~~ 70 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLL-----EPRLQCS--LDAHEICLQDIQLDPDRSLFDQGVK----TDGTVQLSVQVISYQG 70 (89)
T ss_dssp EEEEEESSSBGGGHHHHS-----HHHHCSC--CSSCEEEETTEECCTTSBTTTSSCC----CCSEEEEEEEEECCTT
T ss_pred hhhhccccCcHHHHHHHH-----HHHhcCC--cccCeEEeeccccCCCccHHHhhcc----cccEEEEEEEEEecCC
Confidence 345677778899999999 7777777 6777777788889999999999998 5554455555555443
No 137
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=84.48 E-value=2.6 Score=26.91 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=37.7
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK 63 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk 63 (119)
...+.||+.+.+ ++..+.++++.+-.+|.++| .+..+++ ....+.|-|.-.
T Consensus 4 ~~~vkvK~~~~g--di~~~~v~~~i~~~~L~~kv-----~~~~~~~-~~~~f~lky~DE 54 (89)
T 1vd2_A 4 GSQVRVKAYYRG--DIMITHFEPSISFEGLCNEV-----RDMCSFD-NEQLFTMKWIDE 54 (89)
T ss_dssp SSCEEEEEESSS--CEEEEEECTTCCHHHHHHHH-----HHHTTCC-SSCCEEEEECCS
T ss_pred CCeEEEEEEeCC--eEEEEECCCCCCHHHHHHHH-----HHHhCCC-CCCeEEEEEECC
Confidence 456888888775 57788999999999999999 6655554 134477767644
No 138
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=82.90 E-value=6 Score=30.47 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=49.6
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc---------eeeCCCCCcccCCc
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG---------KILENDRTLADSRI 76 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G---------k~L~D~~tL~~~~i 76 (119)
..+.+++.++||+. ..+.+++++|+.+|=+.| ....++. .....-|.+.. +.|+-++++.+.++
T Consensus 84 ~~~~~~V~l~dg~~-~~~~vd~~tt~~el~~~v-----~~~l~L~-e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 84 KQRPLKIRMLDGTV-KTIMVDDSKTVTDMLMTI-----CARIGIT-NHDEYSLVRELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp CEEEEEEECTTSCE-EEEEEETTSBHHHHHHHH-----HHHTTCS-CGGGEEEECCC----------CCCTTSBTGGGTC
T ss_pred ceeEEEEECcCCCE-EEEEECCCCCHHHHHHHH-----HHHcCCC-CccccEEEEEecccccchHHHHHhcCchhHhhCC
Confidence 35788999999974 579999999999999999 5555555 25666666542 24444455555443
Q ss_pred cccCCCCCeeEEEEEEc
Q 033457 77 TVGDLPSGVTTMHVVIQ 93 (119)
Q Consensus 77 ~~~~~~~~~~~vhlv~~ 93 (119)
. +.. ++++.++
T Consensus 157 ~----~~~--~l~frvK 167 (371)
T 3ivf_A 157 E----EHE--TLLLRRK 167 (371)
T ss_dssp C----TTC--EEEEEEC
T ss_pred C----CCc--eEEEEEE
Confidence 3 334 6666544
No 139
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=82.02 E-value=4 Score=25.00 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=36.5
Q ss_pred CceeEEEeecCCccHHHHHHHcccccCCCcc-CCC--CC-CCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 17 GTDICHGTYASSTTVATLKQQLVAEWPQGKT-ITP--KS-INDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 17 g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~-~~p--~~-~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
|.....++++...||.+|.+.+....|.-.. -+. .. ....++.-+|+.... +.-+. +|+
T Consensus 16 g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~----~gD 78 (89)
T 3po0_A 16 GSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATA----AGD 78 (89)
T ss_dssp TCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCC----TTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccC----CCC
Confidence 4333457777788999999999776653221 011 00 134678888888764 34466 777
No 140
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=81.80 E-value=1.9 Score=27.22 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=39.3
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK 63 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk 63 (119)
..+.||+.+.. +..+.+.+..+..+|.++| .+...++ ++...|-|.-.
T Consensus 4 ~~~~VKV~~~~---tvairvp~~~~y~~L~~~l-----~~kL~l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYKY---TVVMKTQPGLPYSQVRDMV-----SKKLELR--LEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESSS---EEEEEECTTCCHHHHHHHH-----HHHTTCC--GGGCCEEECCT
T ss_pred CcEEEEEEEEE---EEEEECCCCCCHHHHHHHH-----HHHhCCC--cceeEEEeeCC
Confidence 34778888884 5688999999999999999 7777787 88899988653
No 141
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.13 E-value=2 Score=27.57 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=52.1
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE---cceeeCCCCCcccCCcc
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH---AGKILENDRTLADSRIT 77 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~---~Gk~L~D~~tL~~~~i~ 77 (119)
|.++++-+.+....++ .+.++|..+..+|--.|. ++.++. ++..-|+- .+..|+=+.+|.+|+|.
T Consensus 8 E~TvRLvVNy~~tQKt-VvRVSP~vpL~ellp~IC-----~Kcefd--p~~~~Ll~d~~~~e~LdLskSLndlgir 75 (91)
T 2daj_A 8 EKTVRVVINFKKTQKT-IVRVSPHASLQELAPIIC-----SKCEFD--PLHTLLLKDYQSQEPLDLTKSLNDLGLR 75 (91)
T ss_dssp CSCEEEEEEETTTEEE-EEEECSSSCTTTHHHHHH-----HHTTCC--TTSEEEESCSSCCCBCCTTSCHHHHTCS
T ss_pred ccEEEEEEeecCccee-EEEeCCCCcHHHHHHHHh-----hcccCC--hhhEEEecCCCCCcccchhcchhhhhhh
Confidence 7899999999987665 689999999999999994 444566 66666654 45578888899999998
No 142
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=78.34 E-value=8.2 Score=22.78 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=34.0
Q ss_pred EEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCC
Q 033457 8 VELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDR 69 (119)
Q Consensus 8 i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~ 69 (119)
++|++.-..+ ...++++...||.+|.+.+ . ++ .....+...|.++..+.
T Consensus 5 m~i~vNg~~~--~~~~~~~~~~tv~~Ll~~l-----~----~~--~~~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 5 MKFTVITDDG--KKILESGAPRRIKDVLGEL-----E----IP--IETVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEEEEEETTE--EEEEEESSCCBHHHHHHHT-----T----CC--TTTEEEEETTEECCTTS
T ss_pred EEEEEeCccC--ceeEECCCCCcHHHHHHHh-----C----CC--CCCEEEEECCEECCCcc
Confidence 4555544433 2346788889999999988 2 34 56677889999987554
No 143
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=77.43 E-value=2.3 Score=25.51 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=32.3
Q ss_pred cCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEE
Q 033457 26 ASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHV 90 (119)
Q Consensus 26 ~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhl 90 (119)
....||.+|.+.+....|.-...++ .....+..+|+.... +..+. +|+ .|.+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~--~~~~~v~vN~~~v~~-----~~~l~----~gD--~V~i 74 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALE--DGKLLAAVNQTLVSF-----DHPLT----DGD--EVAF 74 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHC--CTTCEEEETTEECCT-----TCBCC----TTC--EEEE
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhc--CCCEEEEECCEECCC-----CCCCC----CCC--EEEE
Confidence 4677999999999554432111233 345678888887753 33566 777 5554
No 144
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=75.64 E-value=5.7 Score=29.85 Aligned_cols=76 Identities=8% Similarity=-0.081 Sum_probs=49.8
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEc---c--eeeCCCCCcccCCcccc
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA---G--KILENDRTLADSRITVG 79 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~---G--k~L~D~~tL~~~~i~~~ 79 (119)
...+.++|.++||+. ..+.+++.+|+.+|=+.| ....++. .....=|.|. | ..|+.++.|.+....
T Consensus 15 ~~~~~~~V~lldgt~-~~~~vd~~tt~~el~~~v-----~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~-- 85 (296)
T 3qij_A 15 YFQGHCKVSLLDDTV-YECVVEKHAKGQDLLKRV-----CEHLNLL-EEDYFGLAIWDNATSKTWLDSAKEIKKQVRG-- 85 (296)
T ss_dssp --CCEEEEECTTSCE-EEEECCTTCBHHHHHHHH-----HHHHTCS-SGGGEEEEEEEETTEEEECCTTSBHHHHC----
T ss_pred CceEEEEEEccCCCE-EEEEECCCCCHHHHHHHH-----HHHcCCC-CcceeEEEEEcCCCccchhccchhHHHhcCC--
Confidence 456899999999975 589999999999999999 5555655 2454555553 2 356666666554222
Q ss_pred CCCCCeeEEEEEEc
Q 033457 80 DLPSGVTTMHVVIQ 93 (119)
Q Consensus 80 ~~~~~~~~vhlv~~ 93 (119)
.+..+++.++
T Consensus 86 ----~~~~l~frvk 95 (296)
T 3qij_A 86 ----VPWNFTFNVK 95 (296)
T ss_dssp -----CCEEEEEES
T ss_pred ----CCcEEEEEEE
Confidence 2236666555
No 145
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=73.56 E-value=1.6 Score=29.54 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=29.6
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG 62 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G 62 (119)
.|.+-.++|+.+|+..| +...|+| +++|||-..-
T Consensus 59 ~~rv~k~~~~~~~~~~v-----a~~lg~~--~~~~RlW~~~ 92 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSL-----SQTMGFP--QDQIRLWPMQ 92 (130)
T ss_dssp EEECCTTSBHHHHHHHH-----HHHHCCC--GGGCEEEECC
T ss_pred eEEEeccCcHHHHHHHH-----HHHhCCC--cccEEEEEee
Confidence 56778899999999999 8888999 9999997653
No 146
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=73.54 E-value=12 Score=22.17 Aligned_cols=66 Identities=6% Similarity=0.094 Sum_probs=38.1
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEE
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSGVTTM 88 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~v 88 (119)
+|++++...-....+++ ...||.+|.+.+... | ++.......++.-+|+.+.+. +..+. +|+ .|
T Consensus 2 ~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~-~----~l~~~l~~~~vavN~~~v~~~----~~~l~----~gD--eV 65 (74)
T 3rpf_C 2 MVEVRFFGPIKEENFFI-KANDLKELRAILQEK-E----GLKEWLGVCAIALNDHLIDNL----NTPLK----DGD--VI 65 (74)
T ss_dssp EEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTC-T----TTTTTTTTCEEEESSSEECCT----TCCCC----TTC--EE
T ss_pred EEEEEEEeecceeEEee-CCCcHHHHHHHHHHC-c----CHHHHhhccEEEECCEEcCCC----CcCCC----CCC--EE
Confidence 46666664321124566 567999999999432 2 222112567777788875432 34566 777 54
Q ss_pred EE
Q 033457 89 HV 90 (119)
Q Consensus 89 hl 90 (119)
.+
T Consensus 66 ~i 67 (74)
T 3rpf_C 66 SL 67 (74)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 147
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=73.12 E-value=11 Score=33.83 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=56.2
Q ss_pred CceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCC-ccCCCCCCCcEEEEEcce-----ee-CCCCCcccCCc
Q 033457 4 GEECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQG-KTITPKSINDVKLIHAGK-----IL-ENDRTLADSRI 76 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~-~~~~p~~~~~qrLi~~Gk-----~L-~D~~tL~~~~i 76 (119)
..+.|.|-|.+++|- ...+.++.+.|+.++|+.||.+-... ..+.-..+++-.+.+-.+ .+ ++.+.|.+.+.
T Consensus 48 ~~~~v~vd~LLPnGi-~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~ 126 (1092)
T 2y3a_A 48 SDGAISVDFLLPTGI-YIQLEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRP 126 (1092)
T ss_dssp CCSEEEEEEECTTCC-EEEEEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCB
T ss_pred CCCceEEEEECCCce-EEEEEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeecc
Confidence 357899999999995 55889999999999999998751111 112222467888888433 35 44477887653
Q ss_pred cccCCCCCeeEEEEEEcc
Q 033457 77 TVGDLPSGVTTMHVVIQP 94 (119)
Q Consensus 77 ~~~~~~~~~~~vhlv~~~ 94 (119)
= -. .+.++.+.
T Consensus 127 ~-----~p--~l~lve~~ 137 (1092)
T 2y3a_A 127 F-----LP--VLKLVTRS 137 (1092)
T ss_dssp S-----SS--CEEEEESC
T ss_pred c-----ce--EEEEEecC
Confidence 2 12 66776663
No 148
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=70.83 E-value=14 Score=23.98 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=42.0
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEE------EcceeeCCCCCcccC
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLI------HAGKILENDRTLADS 74 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi------~~Gk~L~D~~tL~~~ 74 (119)
-..+-|||-+.||+. ..+.|++.+|+.++=+.+ .++......+ .--|+ +.-|.|+|...|-+.
T Consensus 7 ~~k~vvkvf~~Dgss-ksi~V~~~~Ta~dv~~~L-----~~K~~~~~~~-~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 7 GRPHVVKVYSEDGAC-RSVEVAAGATARHVCEML-----VQRAHALSDE-TWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp CSCEEEEEEETTSCE-EEEEECTTCCHHHHHHHH-----HCSSSCCCCC-CCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCCEEEEEEecCCCE-EEEEECCCCcHHHHHHHH-----HHHcCCCCCC-CeEEEEecCCCCcEEeccCchhHHHH
Confidence 345789999999974 689999999999999999 4444322111 11111 244678887776543
No 149
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=69.99 E-value=11 Score=28.70 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=37.8
Q ss_pred eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcc-eeeCCCCC-cccC
Q 033457 19 DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAG-KILENDRT-LADS 74 (119)
Q Consensus 19 ~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~G-k~L~D~~t-L~~~ 74 (119)
....+.+.+..|+..+++.+ +...+++ +..|.|+|.+ .+.-|... .+.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~-----~~~t~i~--~~~q~~l~~~~~~~~~~~~~~~~~ 372 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELV-----YKQTKII--SSNQELIYEGRRLVLEPGRLAQHF 372 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHH-----HHHHCCC--STTEEEESSSSEECCCSSCBTTSS
T ss_pred eEEEEEcCchhHHHHHHHHH-----HHhcCCC--hhhhHHHhcCCCCCCCCCCccccC
Confidence 45567888999999999999 7788898 9999999999 44445443 3444
No 150
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=65.60 E-value=9.6 Score=24.16 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.7
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHc
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQL 38 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I 38 (119)
..+.|||-+-+ |+..+.++++.+..+|+.+|
T Consensus 11 ~~~KVK~yy~D--DIiAIrvP~di~~~~L~dKi 41 (85)
T 1ip9_A 11 KTTKIKFYYKD--DIFALMLKGDTTYKELRSKI 41 (85)
T ss_dssp CCEEEEECBTT--CCEEEEECSCCCHHHHHHHH
T ss_pred CceEEEEEecC--cEEEEECCCCCCHHHHHHHH
Confidence 56777777776 68899999999999999999
No 151
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=60.16 E-value=18 Score=29.41 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=38.4
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH 60 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~ 60 (119)
..+.+++.++||+. ..+.+++.+|+.+|-+.| ....++.++.+..-|.+
T Consensus 215 ~~~~~~V~l~dg~~-~~~~v~~~tt~~el~~~v-----~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGS-CKITINSHTTAGEVVEKL-----IRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHH-----HHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCe-EEEEeCCCCcHHHHHHHH-----HHHcCCCCCCCceEEEE
Confidence 46889999999975 579999999999999999 66666663345566655
No 152
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=57.42 E-value=7.4 Score=23.40 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=27.8
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRT 70 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~t 70 (119)
.++++...||.+|.+.+ . ++ ...+.+...|+++..+..
T Consensus 24 ~~~~~~~~Tv~dLl~~L-----~----~~--~~~v~VavNg~~v~~~~~ 61 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV-----G----FN--TESAIAKVNGKVVLEDDE 61 (77)
T ss_dssp CCCCCSSCCHHHHHHTT-----T----CS--SCSSCEEETTEEECSSSC
T ss_pred EEECCCCCcHHHHHHHh-----C----CC--CcCEEEEECCEECCCCCC
Confidence 45677788999999887 2 34 456678889998875533
No 153
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=57.08 E-value=37 Score=22.06 Aligned_cols=41 Identities=5% Similarity=-0.045 Sum_probs=27.9
Q ss_pred eeEEEEEEeCC------C-ceeEEEeec---CCccHHHHHHHcccccCCCc
Q 033457 6 ECVELKFRIYD------G-TDICHGTYA---SSTTVATLKQQLVAEWPQGK 46 (119)
Q Consensus 6 ~~i~ik~~~~~------g-~~~~~~~~~---~~~TV~~LK~~I~~~wp~~~ 46 (119)
+++.|++++.+ | +....++++ ...||++|-+.|.+++|...
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~ 60 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKER 60 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchh
Confidence 45788888774 2 223346666 33699999999987776553
No 154
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=54.55 E-value=18 Score=20.80 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=21.6
Q ss_pred EEEEEeCCCceeEEEeecCCccHHHHHHHc
Q 033457 9 ELKFRIYDGTDICHGTYASSTTVATLKQQL 38 (119)
Q Consensus 9 ~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I 38 (119)
.|++.+++|+ ...++..+|+.+|-+.+
T Consensus 2 ~i~i~~p~g~---~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 2 EVMVFTPKGE---IKRLPQGATALDFAYSL 28 (73)
T ss_dssp CEEEECTTCC---EEEECTTCBHHHHHHHH
T ss_pred eEEEEcCCCC---EEEcCCCCcHHHHHHHH
Confidence 4777888884 35788889999998887
No 155
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=52.38 E-value=31 Score=19.74 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=26.5
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE 66 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~ 66 (119)
.+++....||.+|.+.+ . ++ ...+.+...|+++.
T Consensus 9 ~~~~~~~~tv~~ll~~l-----~----~~--~~~v~vavN~~~v~ 42 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL-----D----QR--QAGAALAINQQIVP 42 (66)
T ss_dssp EECCCTTCCHHHHHHHH-----T----CC--CSSEEEEETTEEEC
T ss_pred EEEcCCCCcHHHHHHHc-----C----CC--CCCEEEEECCEECC
Confidence 45777888999999988 2 34 56778888999885
No 156
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=48.69 E-value=9.4 Score=31.36 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=29.1
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEc
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA 61 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~ 61 (119)
.+.+..++|+.+||+.| +...++| +++|||-..
T Consensus 39 ~~rv~k~~~~~~l~~~v-----a~~lg~~--~~~~RlW~~ 71 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSL-----SQTMGFP--QDQIRLWPM 71 (530)
T ss_dssp EEEEETTSBHHHHHHHH-----HHHHTSC--GGGEEEEEE
T ss_pred eEEEcCcCCHHHHHHHH-----HHHhCcC--cccEEEEEE
Confidence 57888999999999999 8888999 999999654
No 157
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=48.32 E-value=17 Score=32.75 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=50.0
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCcc---CCCCCCCcEEEEEcce-----eeCC-CCCcccCCc
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKT---ITPKSINDVKLIHAGK-----ILEN-DRTLADSRI 76 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~---~~p~~~~~qrLi~~Gk-----~L~D-~~tL~~~~i 76 (119)
..|.|.|.+++|- ...+.++.+.|+.++|+.+|.+ +... ..-.++++-.+.|-.+ .+-| .+.|.++..
T Consensus 41 ~~i~vd~LLPnGi-~i~l~v~~~~tl~~iK~~lw~~--a~~~pl~~~l~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~ 117 (1091)
T 3hhm_A 41 PRILVECLLPNGM-IVTLECLREATLITIKHELFKE--ARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRL 117 (1091)
T ss_dssp --EEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHH--GGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBTTTSCB
T ss_pred CceEEEEEcCCCe-EEEEEecCCCcHHHHHHHHHHH--HHhCcchhhcCChhHeEEEEEccCceEeeeecCceeeEEeec
Confidence 3499999999995 5588999999999999999765 2211 1111256666666544 4434 345655543
Q ss_pred cccCCCCCeeEEEEEEccC
Q 033457 77 TVGDLPSGVTTMHVVIQPL 95 (119)
Q Consensus 77 ~~~~~~~~~~~vhlv~~~~ 95 (119)
= -. .+.|+.+..
T Consensus 118 ~-----~~--~l~lve~~~ 129 (1091)
T 3hhm_A 118 F-----QP--FLKVIEPVG 129 (1091)
T ss_dssp S-----SS--EEEEECCCS
T ss_pred c-----ce--eEEEEecCC
Confidence 2 12 566655543
No 158
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=47.29 E-value=37 Score=21.06 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=19.8
Q ss_pred CceeEEEeec--CCccHHHHHHHcccccCC
Q 033457 17 GTDICHGTYA--SSTTVATLKQQLVAEWPQ 44 (119)
Q Consensus 17 g~~~~~~~~~--~~~TV~~LK~~I~~~wp~ 44 (119)
|.+...+++. ...||++|.+.|.++.|.
T Consensus 18 g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~ 47 (99)
T 2qjl_A 18 KQRVHKIKMDKEDPVTVGDLIDHIVSTMIN 47 (99)
T ss_dssp TCCEEEEEECSCSCCBHHHHHHHHHHHTCS
T ss_pred CCcEEEEecCCCCCCcHHHHHHHHHHHCch
Confidence 4444445555 578999999999776654
No 159
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=44.84 E-value=25 Score=20.50 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=31.8
Q ss_pred EEEeecCCccHHHHHHHcccccCCCccCCCCCCCcE--EEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 21 CHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDV--KLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 21 ~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~q--rLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
..+++....||.+|.+.+....|+ ...+ .+..+|+....+ ..+. +|+
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~--------~~~v~~~v~vNg~~v~~~-----~~L~----~gD 66 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQ--------INNKKFQVAVNEEFVQKS-----DFIQ----PND 66 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGG--------GTTCCCEEEETTEEECTT-----SEEC----TTC
T ss_pred EEEECCCCCCHHHHHHHHHHHCcc--------hhcceEEEEECCEECCCC-----CCcC----CCC
Confidence 356667778999999998555442 1223 788889888643 3566 677
No 160
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=44.07 E-value=20 Score=30.35 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=37.9
Q ss_pred eEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce-eeCCCCCcccC
Q 033457 20 ICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK-ILENDRTLADS 74 (119)
Q Consensus 20 ~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk-~L~D~~tL~~~ 74 (119)
...+.+.++.|+..|+..| ++..+++ +..|.|++.+. .|......+.|
T Consensus 323 ~~~~~i~~~~tl~~l~~~i-----~~~T~i~--~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 323 VHTYPVTENENLQNLKSWL-----QQDTGIP--EEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp CCEEECCTTCCHHHHHHHH-----HTTSCCC--STTCEEESSSSCCCCTTSCGGGS
T ss_pred cceeecCCCccHHHHHHHH-----HHHhCCC--HHHHHHHhccCCCCCCCcchhhh
Confidence 3467888999999999999 8889999 89999999765 44444455655
No 161
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=41.05 E-value=63 Score=20.00 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=32.7
Q ss_pred EEeecCC-ccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 22 HGTYASS-TTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 22 ~~~~~~~-~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
+++++.. .||.+|.+.+ . ++ +..+.+...|+++..+ ...+..+. +|+
T Consensus 29 ~~el~~~~~Tv~dLL~~L-----~----~~--~~~vaVavNg~iV~~~-~~~~~~L~----dGD 76 (87)
T 1tyg_B 29 DVKWKKDTGTIQDLLASY-----Q----LE--NKIVIVERNKEIIGKE-RYHEVELC----DRD 76 (87)
T ss_dssp EECCSSSCCBHHHHHHHT-----T----CT--TSCCEEEETTEEECGG-GTTTSBCC----SSS
T ss_pred EEECCCCCCcHHHHHHHh-----C----CC--CCCEEEEECCEECChh-hcCCcCCC----CCC
Confidence 4677777 8999999988 2 34 5677788999988532 23334566 777
No 162
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=40.00 E-value=51 Score=27.72 Aligned_cols=48 Identities=23% Similarity=0.104 Sum_probs=37.3
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEE
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIH 60 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~ 60 (119)
..+.+++.+.||+. ..+.+++.+|+.+|-+.| ....++.+ ....-|.|
T Consensus 262 ~~i~~~V~llDgt~-~~~~vds~Tt~~ell~~V-----~~~LgL~e-~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTT-KTLLTDSATTARELCNAL-----ADKISLKD-RFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHH-----HHHTTCSS-CTTEEEEE
T ss_pred CceEEEEEecCCce-EEEEEccCCcHHHHHHHH-----HHHcCCcc-cccceeEE
Confidence 46889999999974 589999999999999999 55555542 45666665
No 163
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=39.76 E-value=43 Score=21.42 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=36.9
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceee
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKIL 65 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L 65 (119)
..++|||-+.+.+ +.+.|...-...+|.+++ ....|. .+-|.|....|
T Consensus 3 ~dvRIKfE~~gEK--RIi~f~RPvkf~dl~qkv-----~~afGq-----~ldl~y~nnEL 50 (94)
T 2jrh_A 3 SDVRIKFEHNGER--RIIAFSRPVKYEDVEHKV-----TTVFGQ-----PLDLHYMNNEL 50 (94)
T ss_dssp CCEEEEEEETTEE--EEEEECSSCCHHHHHHHH-----HHHHCS-----SEEEEEECSSC
T ss_pred CceEEEEEecCce--EEEecCCCccHHHHHHHH-----HHHhCC-----eeeeEEeccee
Confidence 5799999998864 468999999999999999 555554 46677775533
No 164
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=39.58 E-value=70 Score=20.25 Aligned_cols=56 Identities=11% Similarity=-0.024 Sum_probs=34.9
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeC
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILE 66 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~ 66 (119)
.|.|-+-+++......+.+...+||.++=+.+ .++.....+. .....+-..|+...
T Consensus 14 ~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~--gi~~~~peId--l~~~~V~Vng~~v~ 69 (97)
T 2hj1_A 14 NIEIAYAFPERYYLKSFQVDEGITVQTAITQS--GILSQFPEID--LSTNKIGIFSRPIK 69 (97)
T ss_dssp EEEEEEEETTEEEEEEEEEETTCBHHHHHHHH--THHHHCTTCC--TTTSEEEEEECSCC
T ss_pred EEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHc--CCCccCCccc--ccccEEEEcCEECC
Confidence 45555556665455567888999999998776 1111111233 34567778888776
No 165
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=38.45 E-value=1.2e+02 Score=24.68 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=42.2
Q ss_pred ceeEEEEEEeCCCce-eEEEeecCCccHHHHHHHcccccCCCccCCC-CCCCcEEEE--Ecce---eeCCCCCcccC
Q 033457 5 EECVELKFRIYDGTD-ICHGTYASSTTVATLKQQLVAEWPQGKTITP-KSINDVKLI--HAGK---ILENDRTLADS 74 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~-~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p-~~~~~qrLi--~~Gk---~L~D~~tL~~~ 74 (119)
.-.+.|.+.-++.+. ...+-++.+.||.+|-+.+ +...+++ .....+||. |.|| ++.++.+|+..
T Consensus 337 ~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l-----~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 337 RRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEEC-----KKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp BCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHH-----HTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred CceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHH-----HHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 345566665443322 2245567899999999999 5555555 235788874 8887 45677777654
No 166
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=37.26 E-value=71 Score=28.81 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=47.8
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCC-CCCcEEEEEcce--eeCCCCCcccC
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPK-SINDVKLIHAGK--ILENDRTLADS 74 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~-~~~~qrLi~~Gk--~L~D~~tL~~~ 74 (119)
.+-|++.+.+++...++.++.++|+.+|-+.+..++..-.....+ .+++.-|--.|+ .|-.+..|.++
T Consensus 218 ~~~i~v~~~~~~~~~t~~v~~~~tp~~li~~~~~k~~~~~~~~~~~~~~dyvLkv~G~~eyl~g~~~L~~f 288 (1092)
T 2y3a_A 218 KLVVAVHFENSQDVFSFQVSPNLNPIKINELAIQKRLTIRGKEDEASPCDYVLQVSGRVEYVFGDHPLIQF 288 (1092)
T ss_dssp CEEEEEEETTCSCCEEEEECTTSCTHHHHHHHHCCCCC-------CCGGGEEEEETTBSCEECSSSCGGGB
T ss_pred cEEEEEEEecCCceEEEEecCCCCHHHHHHHHHHHHHHhcCCCccCChhheEEEeccceeEEeCCcceehh
Confidence 467777776555667899999999999999998877543211111 367788888998 55555888877
No 167
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=35.97 E-value=56 Score=21.27 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=36.4
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEc
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHA 61 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~ 61 (119)
...++|||-+.+.+ +.+.|+..-+-.+|.+++ .+..|. .+-|.|.
T Consensus 6 ~~dvRiKfE~~GEk--RIi~f~RPv~f~eL~~Kv-----~~~fGq-----~ldL~y~ 50 (103)
T 2cu1_A 6 SGDVRVKFEHRGEK--RILQFPRPVKLEDLRSKA-----KIAFGQ-----SMDLHYT 50 (103)
T ss_dssp SCEEEEEEEETTEE--EEEEEESSCCHHHHHHHH-----HHHHSS-----CEEEEEC
T ss_pred cCcEEEEEEecCeE--EEEeccCCccHHHHHHHH-----HHHhCC-----eeeEEEe
Confidence 57899999998864 568999999999999999 666665 4667777
No 168
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=34.91 E-value=29 Score=26.07 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=26.1
Q ss_pred eeEEEEEEeCCCceeEEEeecC--CccHHHHHHHc
Q 033457 6 ECVELKFRIYDGTDICHGTYAS--STTVATLKQQL 38 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~--~~TV~~LK~~I 38 (119)
..++|+|.++||+. +.++++. ++|+.+|-+.+
T Consensus 4 ~~~~i~V~l~dg~~-~~~~i~~~~~tt~~el~e~l 37 (322)
T 4dxa_B 4 EFEKVRIYRMDGSY-RSVELKHGNNTTVQQIMEGM 37 (322)
T ss_dssp -CCEEEEECTTSCE-EEEECTTGGGCCHHHHHTTS
T ss_pred CceEEEEEEECCcE-EEEEEcCCCCCcHHHHHHHh
Confidence 35789999999974 5899998 99999996554
No 169
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=31.58 E-value=56 Score=21.43 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=36.0
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK 63 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk 63 (119)
...++|||-+.+.+ +.+.|...-...+|.+++ ....|.+ +-|.|...
T Consensus 29 q~dvRIKfE~~gEK--RIiqf~RPvkf~dl~qkv-----~~afGq~-----ldl~y~nn 75 (111)
T 2c60_A 29 QSDVRIKFEHNGER--RIIAFSRPVKYEDVEHKV-----TTVFGQP-----LDLHYMNN 75 (111)
T ss_dssp -CCEEEEEEETTEE--EEEEECSSCCHHHHHHHH-----HHHHSSC-----CEEEEECS
T ss_pred ccceEEEEEecCce--EEEecCCCccHHHHHHHH-----HHHhCCe-----eeeEEecc
Confidence 67899999998864 468999999999999999 6655554 45667644
No 170
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=30.76 E-value=90 Score=18.76 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=36.2
Q ss_pred EeecCCccHHHHHHHcccccCCCccCCCC-----C-CCcEEEEEcceeeCCCCCcccCCccccCCCCCeeEEEEE
Q 033457 23 GTYASSTTVATLKQQLVAEWPQGKTITPK-----S-INDVKLIHAGKILENDRTLADSRITVGDLPSGVTTMHVV 91 (119)
Q Consensus 23 ~~~~~~~TV~~LK~~I~~~wp~~~~~~p~-----~-~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~~~~vhlv 91 (119)
++. ...||++|.+.+..++|.-...+.. . ....++.-+|+...+..-+ +.-+. +|+ .|.++
T Consensus 21 ~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~----~gD--eV~i~ 87 (93)
T 3dwg_C 21 VSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIA----DGD--SVTIL 87 (93)
T ss_dssp EEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCC----TTC--EEEEE
T ss_pred Eec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCC----CCC--EEEEE
Confidence 554 4579999999998777643221110 0 1357788888877542222 23466 788 55443
No 171
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=30.60 E-value=86 Score=18.49 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=31.4
Q ss_pred EEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
++++ ...||.+|-+.+ +++ +..+-+...|.++.- ....+..++ +|+
T Consensus 9 ~~e~-~~~Tl~~LL~~l---------~~~--~~~vAV~vNg~iVpr-~~~~~~~L~----dGD 54 (73)
T 2kl0_A 9 QREV-QSASVAALMTEL---------DCT--GGHFAVALNYDVVPR-GKWDETPVT----AGD 54 (73)
T ss_dssp EECC-CCSBHHHHHHHT---------TCC--SSSCEEEESSSEECH-HHHTTCBCC----TTC
T ss_pred EEEc-CCCcHHHHHHHc---------CCC--CCcEEEEECCEECCh-HHcCcccCC----CCC
Confidence 4566 678999998877 355 666778899998842 123344566 677
No 172
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=28.41 E-value=1.3e+02 Score=19.97 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=43.6
Q ss_pred EEeecCCccHHHHHHHcccccCC---CccCCCCCCCcEEEEEcceee--CCCCCcccCCccccCCCCC
Q 033457 22 HGTYASSTTVATLKQQLVAEWPQ---GKTITPKSINDVKLIHAGKIL--ENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 22 ~~~~~~~~TV~~LK~~I~~~wp~---~~~~~p~~~~~qrLi~~Gk~L--~D~~tL~~~~i~~~~~~~~ 84 (119)
.+.++|+++-+.|-+.+...|-. +...+. -+...+...|+.. +.+++|++.|+. .-+
T Consensus 41 ~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~id--ws~v~W~l~g~pftPD~~kSLaenG~~----HKs 102 (119)
T 3u52_E 41 ALLVQPGMTFSALVDEILKPATAAHPDSAKAD--FLNAEWLLNDEPFTPKADASLKEQGID----HKS 102 (119)
T ss_dssp EEEECTTSBHHHHHHHTHHHHTTTSTTGGGCC--TTSSEEEETTEEECCCTTSBTTTTTCC----TTE
T ss_pred eecCCCCCCHHHHHHHhcchhhhcCCccccCC--cchheEEECCccCCCChhhhHHHcCCC----chh
Confidence 47889999999999888654322 234455 6778899999988 466899999999 666
No 173
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=27.78 E-value=1.2e+02 Score=19.35 Aligned_cols=32 Identities=6% Similarity=0.066 Sum_probs=25.8
Q ss_pred eEEEEEEeCCC------ceeEEEeecCCccHHHHHHHc
Q 033457 7 CVELKFRIYDG------TDICHGTYASSTTVATLKQQL 38 (119)
Q Consensus 7 ~i~ik~~~~~g------~~~~~~~~~~~~TV~~LK~~I 38 (119)
.|.||+.+.+. .++..+-++++.+-.+|..+|
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI 42 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAI 42 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHH
Confidence 47777777631 367789999999999999999
No 174
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=27.65 E-value=87 Score=17.62 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCccccCCCCC
Q 033457 16 DGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVGDLPSG 84 (119)
Q Consensus 16 ~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~~~~~~ 84 (119)
+|+ ++++ ...||.+|.+.+ . ++ .....+...|+++..+ .-.+..+. +|+
T Consensus 5 Ng~---~~~~-~~~tv~~ll~~l-----~----~~--~~~v~vavN~~~v~~~-~~~~~~L~----dgD 53 (64)
T 2cu3_A 5 NGE---PRPL-EGKTLKEVLEEM-----G----VE--LKGVAVLLNEEAFLGL-EVPDRPLR----DGD 53 (64)
T ss_dssp TTE---EECC-TTCCHHHHHHHH-----T----BC--GGGEEEEETTEEEEGG-GCCCCCCC----TTC
T ss_pred CCE---EEEc-CCCcHHHHHHHc-----C----CC--CCcEEEEECCEECCcc-ccCCcCCC----CCC
Confidence 663 3567 778999999988 2 34 5677888899988532 12233566 677
No 175
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=27.07 E-value=45 Score=20.96 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=17.8
Q ss_pred CCCceeEEEEEEeCCCceeEEEeecCC
Q 033457 2 GEGEECVELKFRIYDGTDICHGTYASS 28 (119)
Q Consensus 2 ~~~~~~i~ik~~~~~g~~~~~~~~~~~ 28 (119)
.+|+..+.|++.++.|. ....++|+
T Consensus 53 ~~G~~~~~V~v~~P~G~--~lv~vsP~ 77 (90)
T 3lyw_A 53 EPGEHDYEVKVEPIPNI--KIVEISPR 77 (90)
T ss_dssp CSEEEEEECEECCCTTE--EEEEEESS
T ss_pred CCCcEeEEEEEECCCCC--EEEEEccc
Confidence 46678888888888883 34666665
No 176
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=26.57 E-value=76 Score=20.49 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=35.8
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcce
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGK 63 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk 63 (119)
...++|||-+.+.+ +.+.|...-...+|.+++ ....|.+ +-|.|...
T Consensus 18 q~dvRIKfE~~gEk--RIi~f~RPv~f~el~~kv-----~~afGq~-----ldl~y~nn 64 (100)
T 2npt_B 18 QNDVRVKFEHRGEK--RILQFPRPVKLEDLRSKA-----KIAFGQS-----MDLHYTNN 64 (100)
T ss_dssp -CCEEEEEEETTEE--EEEEECSSCCHHHHHHHH-----HHHHTSC-----EEEEEEET
T ss_pred ccceEEEEEecCce--EEEecCCCccHHHHHHHH-----HHHhCCe-----eeeEEecc
Confidence 56899999998864 468999999999999999 5555544 55777654
No 177
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=26.22 E-value=1.1e+02 Score=23.04 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=28.0
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHHHcc
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQQLV 39 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~ 39 (119)
-..+-|+|-+.||+ ...+.|++++|+.+|=+.+.
T Consensus 29 ~~k~ivkv~~~D~s-s~~l~V~~~~TA~dv~~~L~ 62 (281)
T 4gmv_A 29 VKKLVIRVHMSDDS-SKTMMVDERQTVRQVLDNLM 62 (281)
T ss_dssp SCEEEEEEEETTSC-EEEEEEETTCBHHHHHHHHH
T ss_pred cccEEEEEEecCCC-EEEEEECCCCcHHHHHHHHH
Confidence 34577999999996 45899999999999987764
No 178
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=25.95 E-value=63 Score=21.43 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=41.4
Q ss_pred CceeEEEEEEeCCCc----eeEEEeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcccCCcccc
Q 033457 4 GEECVELKFRIYDGT----DICHGTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLADSRITVG 79 (119)
Q Consensus 4 ~~~~i~ik~~~~~g~----~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~~~~i~~~ 79 (119)
.++-|.|+++.+..+ ++ .+.++.+. -+ .-.+ |--+||.|.|++.+|+..=++|.+.
T Consensus 25 Ddefv~I~I~~p~ir~~a~~~-ei~vd~~~-------F~--------F~~~--PYyLRL~lP~~vved~~~~A~YD~d-- 84 (115)
T 3eud_A 25 DEEFIFLKIFISNIRFSAVGL-EIIIQENM-------II--------FHLS--PYYLRLRFPHELIDDERSTAQYDSK-- 84 (115)
T ss_dssp CSSEEEEEEECCSCCCCSSSC-EEEEETTE-------EE--------EEET--TEEEEEECSSCEECSTTCEEEEETT--
T ss_pred CCCEEEEEEEcCceecccCcc-EEEEeCCE-------EE--------EecC--CeEEEEecCcceecCCCcceEEeCC--
Confidence 356788888887632 11 23333321 11 1234 8999999999999998888888887
Q ss_pred CCCCCeeEEEE
Q 033457 80 DLPSGVTTMHV 90 (119)
Q Consensus 80 ~~~~~~~~vhl 90 (119)
.+. ++|++
T Consensus 85 --~g~-~~v~l 92 (115)
T 3eud_A 85 --DEC-INVKV 92 (115)
T ss_dssp --TTE-EEEEE
T ss_pred --CcE-EEEEE
Confidence 554 35544
No 179
>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2
Probab=25.27 E-value=49 Score=24.19 Aligned_cols=42 Identities=7% Similarity=-0.088 Sum_probs=33.4
Q ss_pred EeecCCccHHHHHHHcccccCCCccCCCCCCCcEEEEEcceeeCCCCCcc
Q 033457 23 GTYASSTTVATLKQQLVAEWPQGKTITPKSINDVKLIHAGKILENDRTLA 72 (119)
Q Consensus 23 ~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~~~~qrLi~~Gk~L~D~~tL~ 72 (119)
|.+ +.+|+.+|++-. ....-+| +..=|.+|.|+++.-.-+|+
T Consensus 198 f~l-~ptsieev~~VA-----d~G~~MP--pKSTr~~~~~~~~~~~ipl~ 239 (242)
T 1vk1_A 198 FIR-XAPTKEEVMELV-----KRGEVFS--PXTTRHVLPFIPDKIDVKLE 239 (242)
T ss_dssp EEC-CCCCHHHHHHHH-----HTTCCBS--TTCCEEECSSEECCCCEEGG
T ss_pred EEe-cCCCHHHHHHHH-----hcCCcCC--CCccceeecCcCCCcccchH
Confidence 344 666899999877 6677899 89999999999997666554
No 180
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=24.67 E-value=1.2e+02 Score=18.82 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHH
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQ 36 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~ 36 (119)
.+.|+|...+|.. ..+.+.+..|+.+.=.
T Consensus 5 m~~v~~~~~~g~~-~~~~~~~g~tlL~aa~ 33 (109)
T 2y5c_A 5 VVNVVFVDRSGQR-IPVSGRVGDNVLHLAQ 33 (109)
T ss_dssp EEEEEEECTTSCE-EEEEEETTCBHHHHHH
T ss_pred cEEEEEEcCCCCE-EEEEECCCCcHHHHHH
Confidence 4677787788854 4688999999987643
No 181
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=23.81 E-value=85 Score=21.55 Aligned_cols=64 Identities=13% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCccHHHHHHHcccccCCCcc-C--------CCC-C-----CCcEEEEEcceee-CCCCCcccCCccccCCCCCeeEEEE
Q 033457 27 SSTTVATLKQQLVAEWPQGKT-I--------TPK-S-----INDVKLIHAGKIL-ENDRTLADSRITVGDLPSGVTTMHV 90 (119)
Q Consensus 27 ~~~TV~~LK~~I~~~wp~~~~-~--------~p~-~-----~~~qrLi~~Gk~L-~D~~tL~~~~i~~~~~~~~~~~vhl 90 (119)
.+.|..+|-..|...-|+... + +|. . ..++=-++.|+-- +|++||.+.+.. .|+ .|-+
T Consensus 62 ~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~----iGD--yidv 135 (143)
T 4a6q_A 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQ----IGD--YLDI 135 (143)
T ss_dssp TTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCC----TTC--EEEE
T ss_pred CCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCc----CCC--EEEE
Confidence 788999998888665554211 0 110 0 1233344555544 578999999999 788 6666
Q ss_pred EEccCc
Q 033457 91 VIQPLV 96 (119)
Q Consensus 91 v~~~~~ 96 (119)
.+-+|.
T Consensus 136 aI~pP~ 141 (143)
T 4a6q_A 136 AITPPN 141 (143)
T ss_dssp EEECGG
T ss_pred EEeCCC
Confidence 666553
No 182
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=23.21 E-value=1.3e+02 Score=18.48 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=22.5
Q ss_pred ceeEEEEEEeCCCceeEEEeecCCccHHHHHH
Q 033457 5 EECVELKFRIYDGTDICHGTYASSTTVATLKQ 36 (119)
Q Consensus 5 ~~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~ 36 (119)
...++|+|...+|.. +.+.+.+.+|+.+.=.
T Consensus 4 ~~m~~V~~~~~~g~~-~~v~~~~g~tLL~aa~ 34 (108)
T 2bt6_A 4 GDKITVHFINRDGET-LTTKGKIGDSLLDVVV 34 (108)
T ss_dssp -CEEEEEEECTTSCE-EEEEEETTCBHHHHHH
T ss_pred CceEEEEEECCCCCE-EEEEECCCChHHHHHH
Confidence 345778888788854 4788999999887643
No 183
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=23.02 E-value=1.5e+02 Score=21.95 Aligned_cols=32 Identities=28% Similarity=0.111 Sum_probs=26.5
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcc
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLV 39 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~ 39 (119)
..-|+|-..||+ ...+.|++++|+.+|=+.+.
T Consensus 8 ~~ivkv~~~d~s-s~~l~V~~~mta~ev~~~l~ 39 (256)
T 3hk0_A 8 KQDVKVFSEDGT-SKVVEILADMTARDLCQLLV 39 (256)
T ss_dssp CEEEEEEETTSC-EEEEEECTTCBHHHHHHHHH
T ss_pred ceEEEEEecCCc-EEEEEECCCCCHHHHHHHHH
Confidence 346788889985 45899999999999988884
No 184
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=22.43 E-value=1.4e+02 Score=18.21 Aligned_cols=31 Identities=10% Similarity=0.121 Sum_probs=22.4
Q ss_pred eeEEEEEEeCCCceeEEEeecCCccHHHHHHH
Q 033457 6 ECVELKFRIYDGTDICHGTYASSTTVATLKQQ 37 (119)
Q Consensus 6 ~~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~ 37 (119)
..++|+|...+|.. ..+.+++..|+.+.=+.
T Consensus 2 ~~~~v~~~~~~g~~-~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 2 TGIKVFFVTPEGRE-IMIEGNEGDSILDLAHA 32 (103)
T ss_dssp CCEEEEEECTTCCE-EEEEECTTCBHHHHHHH
T ss_pred CceEEEEEeCCCCE-EEEEECCCCHHHHHHHH
Confidence 35778887667743 46889999999886443
No 185
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=21.95 E-value=1.7e+02 Score=25.84 Aligned_cols=68 Identities=7% Similarity=-0.017 Sum_probs=47.3
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHHcccccCCCcc-CCCCCCCcEEEEEcce--eeCCCCCcccC
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQLVAEWPQGKT-ITPKSINDVKLIHAGK--ILENDRTLADS 74 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~-~~p~~~~~qrLi~~Gk--~L~D~~tL~~~ 74 (119)
.+.|++.+.+++...++.++.++|..+|-+.+..++..-.. .....+++.-|--.|+ .|-.+.+|.+|
T Consensus 85 ~~~i~v~~~~~~~~~t~~v~~~~~p~~~i~~~~~k~~~~~~~~~~~~~~dyvLkv~G~~EYl~g~~pL~~f 155 (940)
T 2wxf_A 85 ALLVNVKFEGSEESFTFQVSTKDMPLALMACALRKKATVFRQPLVEQPEEYALQVNGRHEYLYGNYPLCHF 155 (940)
T ss_dssp EEEEEEEESSCSCEEEEEEETTCCHHHHHHHHHHHHHHHTTC----CGGGEEEEETTSSCEECSSCCGGGB
T ss_pred cEEEEEEEecCCceEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccCCccceEEEecCcEEEEECCcceehh
Confidence 46677777654456789999999999999998776543211 1122367888888997 56666888877
No 186
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=21.79 E-value=67 Score=22.05 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCCCceeEEEEEEeCCCceeEEEeecCCc---cHHHHHHHc
Q 033457 1 MGEGEECVELKFRIYDGTDICHGTYASST---TVATLKQQL 38 (119)
Q Consensus 1 ~~~~~~~i~ik~~~~~g~~~~~~~~~~~~---TV~~LK~~I 38 (119)
|++.....+|++.+.+ ..+...+..+. |+..+.++|
T Consensus 23 ~~~~~~~~~I~i~~~~--~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 23 MGERGVEMRLRIRFES--AECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCCCSSCCCEEEEETT--EEEEECCCTTSCHHHHHHHHHTC
T ss_pred cccccCCeEEEEEECC--EEEEEEEcCCCCHHHHHHHHHhC
Confidence 4454556677777655 24566777787 999999887
No 187
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=21.68 E-value=1.4e+02 Score=17.95 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=22.0
Q ss_pred eEEEEEEeCCCceeEEEeecCCccHHHHHHH
Q 033457 7 CVELKFRIYDGTDICHGTYASSTTVATLKQQ 37 (119)
Q Consensus 7 ~i~ik~~~~~g~~~~~~~~~~~~TV~~LK~~ 37 (119)
.++|+|...++.. ..+.+++..|+.+.=+.
T Consensus 4 ~~~v~~~~~~~~~-~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 4 VHTITAVTEDGES-LRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEEEETTTEE-EEEEEESCCTHHHHHHH
T ss_pred cEEEEEEecCCCc-EEEEeCCCChHHHHHHH
Confidence 4677887766644 47899999999886544
No 188
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=21.18 E-value=90 Score=21.02 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=17.4
Q ss_pred cEEEEEcceeeC-CCCCcccCCccccCCCCC
Q 033457 55 DVKLIHAGKILE-NDRTLADSRITVGDLPSG 84 (119)
Q Consensus 55 ~qrLi~~Gk~L~-D~~tL~~~~i~~~~~~~~ 84 (119)
++||||-=-+=+ =+++|++.|+. +|+
T Consensus 46 ~~rLLyD~DfDDnl~k~L~dLgv~----~gs 72 (127)
T 3onh_A 46 NQRLLFDYDFEDLNDRTLSEINLG----NGS 72 (127)
T ss_dssp TTEEEEETTBCTTTTSBTTTTTCC----TTC
T ss_pred CCCeEeCCCccccccCcHHHcCcC----CCc
Confidence 577877654322 23789999998 665
No 189
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=20.99 E-value=1.5e+02 Score=18.12 Aligned_cols=73 Identities=15% Similarity=0.306 Sum_probs=39.6
Q ss_pred EEEEEEeCC------CceeEEEeecCCccHHHHHHHcccccCCCccCCCCC---CCcE-------EEEEcceeeCCCCCc
Q 033457 8 VELKFRIYD------GTDICHGTYASSTTVATLKQQLVAEWPQGKTITPKS---INDV-------KLIHAGKILENDRTL 71 (119)
Q Consensus 8 i~ik~~~~~------g~~~~~~~~~~~~TV~~LK~~I~~~wp~~~~~~p~~---~~~q-------rLi~~Gk~L~D~~tL 71 (119)
+.|++++.+ |.+ .++++ ..||.+|.+.+..+.|+-...+-+. ...+ .+..+|+.......+
T Consensus 4 m~v~V~~fa~lr~~~g~~--~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~ 80 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTP--ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGL 80 (99)
T ss_dssp CEEEEEECTHHHHHHSSS--EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTST
T ss_pred eEEEEEEeHHHHHHhCCC--eEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCC
Confidence 467777664 432 34555 6899999999976655321111000 1134 677788766322111
Q ss_pred ccCCccccCCCCCeeEEEE
Q 033457 72 ADSRITVGDLPSGVTTMHV 90 (119)
Q Consensus 72 ~~~~i~~~~~~~~~~~vhl 90 (119)
+..+. +|+ .|.+
T Consensus 81 -~~~L~----~gD--~V~i 92 (99)
T 2l52_A 81 -ETLLK----DSD--EIGI 92 (99)
T ss_dssp -TSCCC----TTE--EEEE
T ss_pred -CCCCC----CCC--EEEE
Confidence 23466 777 5544
Done!