BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033459
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
Y++L +P SA ++IK AYRR A HPD N KE + +F ++ AY LSD HKR
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-KEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 72 NYDR 75
YDR
Sbjct: 64 IYDR 67
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
Y+VLG+ SA +IK AYR+LA HPD N KE + +F + AY LSD KR+
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN-KEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 72 NYDRA 76
YDRA
Sbjct: 71 LYDRA 75
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSAN-EFIKIHAAYSTLSDPHKR 70
Y++LG+ +A+ EI+ AY+RLA HPD NQ + A +F +I AY L+D KR
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 71 ANYDR 75
A YD+
Sbjct: 63 AAYDQ 67
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
YDVLG+ A NE+K AYR++A HPD + A +F +I AY LSD KR
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPD-----KNPDGAEQFKQISQAYEVLSDEKKRQ 65
Query: 72 NYDRA 76
YD+
Sbjct: 66 IYDQG 70
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSAN-EFIKIHAAYSTLSDPHKR 70
Y++LG+ +A+ EI+ AY+RLA HPD NQ + A +F +I AY L+D KR
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 71 ANYDR 75
A YD+
Sbjct: 63 AAYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSAN-EFIKIHAAYSTLSDPHKR 70
Y++LG+ +A+ EI+ AY+RLA HPD NQ + A +F +I AY L+D KR
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 71 ANYDR 75
A YD+
Sbjct: 63 AAYDQ 67
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
Y VLG+ +A +IK AY++LAR HPD N+ + + FI+I AY LS+ KR
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPD---KNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 72 NYD 74
NYD
Sbjct: 77 NYD 79
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
YD+LG+P SA +IK A+ +LA HPD N+ + +F +I AY TLSD ++R
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPD---KNKSPDAEAKFREIAEAYETLSDANRRK 66
Query: 72 NYD 74
YD
Sbjct: 67 EYD 69
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
Y +LG+P +A EIK AY +LA+ HPD TN+ + A E F ++ AY LSD KR
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPD---TNKDDPKAKEKFSQLAEAYEVLSDEVKR 66
Query: 71 ANYD 74
YD
Sbjct: 67 KQYD 70
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
Y+VL +P A IK AYR+LA HPD N KE + F ++ AY LSD KR
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 72 NYDR 75
YDR
Sbjct: 71 IYDR 74
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
Y++LG+ A ++K AYRRLA HPD N + F I AY+ LS+P KR
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPD---KNHAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 72 NYDR 75
YD+
Sbjct: 67 QYDQ 70
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
YDVLG+ +A E+K AYR+LA HPD N E +F +I AY LSD KR
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPD---KNPNE--GEKFKQISQAYEVLSDAKKRE 63
Query: 72 NYDRA 76
YD+
Sbjct: 64 LYDKG 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
Y +LG+ + D IK AYRRLAR HPDV N E +F + A+ L D +RA
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA---KFKDLAEAWEVLKDEQRRA 87
Query: 72 NYDR 75
YD+
Sbjct: 88 EYDQ 91
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
Y LG+ A EIK AYRR A HPD N++ + +F +I AY LSDP KR
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPD---KNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 72 NYDR 75
+DR
Sbjct: 63 IFDR 66
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
LYD+LG+ SA+ E+K YR+ A HPD + +F +I A+ L+DP KR
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILNDPQKR 64
Query: 71 ANYDR 75
YD+
Sbjct: 65 EIYDQ 69
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
Y ++G+ + D IK AYRRLAR HPDV E F ++ A+ LSD +RA
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR---FKEVAEAWEVLSDEQRRA 64
Query: 72 NYDR 75
YD+
Sbjct: 65 EYDQ 68
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
LYD+LG+P +A +IKAAY R HPD + + + +A F +I AY L R
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAE--AAERFTRISQAYVVLGSATLR 76
Query: 71 ANYDRALF 78
YDR L
Sbjct: 77 RKYDRGLL 84
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
LY VLG+ +A ++IK +YR+LA HPD N + +A++F +I+ A++ L+D KR
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPE--AADKFKEINNAHAILTDATKR 76
Query: 71 ANYDR----ALFVVRK 82
YD+ L+V +
Sbjct: 77 NIYDKYGSLGLYVAEQ 92
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
Y +LG+ +A EI+ A+++LA HPD N + +F+KI+ AY L D R
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN--AHGDFLKINRAYEVLKDEDLR 61
Query: 71 ANYDR 75
YD+
Sbjct: 62 KKYDK 66
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
Y +LG+ +A EI+ A+++LA HPD N + +F+KI+ AY L D R
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN--AHGDFLKINRAYEVLKDEDLR 80
Query: 71 ANYDR 75
YD+
Sbjct: 81 KKYDK 85
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 12 YDVLGIPVSA-DGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHK 69
YDVL + D ++ AYR LAR HPD V ++++ A E F I AY TL D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 70 RANYDRAL 77
+ NYD L
Sbjct: 78 KTNYDYYL 85
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVAT-NQKEMSANEFIKIHAAYSTLSDPHKR 70
Y +LG+ +A EI AYR+LA HPD +K+ + +FI I AA LSDP R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 71 ANYD 74
+D
Sbjct: 445 KKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVAT-NQKEMSANEFIKIHAAYSTLSDPHKR 70
Y +LG+ +A EI AYR+LA HPD +K+ + +FI I AA LSDP R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 71 ANYD 74
+D
Sbjct: 445 KKFD 448
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 12 YDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQKE---MSANEFIKIHAAYSTLSD 66
+++ G+P+ DG+ + + +R L + HPD AT + + + +I+ AY TL D
Sbjct: 7 FELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKD 66
Query: 67 PHKRANY 73
P +RA Y
Sbjct: 67 PLRRAEY 73
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATN----QKEMSANEFIKIHAAYSTLSDP 67
Y +LG SA+ +++K Y++L HPD +T+ E +FI+I A+ L +
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 68 HKRANYD 74
+ YD
Sbjct: 73 ETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDV----VATNQKEMSANEFIKIHAAYSTLSDP 67
Y +LG SA+ +++K Y++L HPD V E +FI+I A+ L +
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 68 HKRANYD 74
+ YD
Sbjct: 79 ETKKKYD 85
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 17 IPV-SADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANY 73
+P+ + D + ++ YR+L HPD+ ++ S ++ AY TL DP +R+ Y
Sbjct: 25 LPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSST-----LNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 17 IPV-SADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANY 73
+P+ + D + ++ YR+L HPD+ ++ S ++ AY TL DP +R+ Y
Sbjct: 17 LPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSST-----LNQAYHTLKDPLRRSQY 69
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
Y +LG + +I A ++ A CHPD N K + F K+ A L++ RA
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVET--FQKLQKAKEILTNEESRA 80
Query: 72 NYD 74
YD
Sbjct: 81 RYD 83
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPD 40
+D+LG+ A +E+ AYR+LA HPD
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPD 58
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 21 ADGNEIKAAYRRLARTCH-PDVVATNQKEMSANEFIKIHAA 60
ADGNE+ AAY+ + H P ++A +++ + E I +A
Sbjct: 502 ADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESA 542
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 21 ADGNEIKAAYRRLARTCH-PDVVATNQKEMSANEFIKIHAA 60
ADGNE+ AAY+ + H P ++A +++ + E I +A
Sbjct: 502 ADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESA 542
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 21 ADGNEIKAAYRRLARTCH-PDVVATNQKEMSANEFIKIHAA 60
ADGNE+ AAY+ + H P ++A +++ + E I +A
Sbjct: 500 ADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESA 540
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 46 QKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVR-KRPV 85
+ +M E + IH + L+ P R N+D + +VR K PV
Sbjct: 144 KSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPV 184
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1
J-Domain
Length = 106
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 22 DGNEIKAAYRRLARTCHPDVV-----ATNQKEMSANEFIKIHAAY 61
+GN ++ +Y+R HPD + + NQK M+ F + A+
Sbjct: 53 EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,691,598
Number of Sequences: 62578
Number of extensions: 71966
Number of successful extensions: 205
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 35
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)