Query 033459
Match_columns 119
No_of_seqs 219 out of 1250
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:31:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 9.7E-27 2.1E-31 178.3 8.7 73 7-81 2-74 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.2E-25 2.7E-30 169.1 8.9 76 2-79 9-84 (336)
3 PRK14288 chaperone protein Dna 99.9 1.8E-22 3.8E-27 156.2 7.6 69 8-78 2-70 (369)
4 KOG0712 Molecular chaperone (D 99.9 3.5E-22 7.5E-27 151.6 8.9 69 7-80 2-70 (337)
5 PRK14279 chaperone protein Dna 99.9 3E-22 6.5E-27 155.9 7.9 74 2-77 2-75 (392)
6 PF00226 DnaJ: DnaJ domain; I 99.9 1.1E-21 2.4E-26 116.6 6.3 64 10-74 1-64 (64)
7 PRK14296 chaperone protein Dna 99.9 9E-22 1.9E-26 152.4 7.2 68 8-78 3-70 (372)
8 PRK14286 chaperone protein Dna 99.9 1.6E-21 3.5E-26 151.0 7.9 69 8-78 3-71 (372)
9 PRK14282 chaperone protein Dna 99.8 2.8E-21 6E-26 149.5 7.6 70 8-78 3-72 (369)
10 PRK14295 chaperone protein Dna 99.8 3.3E-21 7.1E-26 150.0 8.0 74 1-76 1-74 (389)
11 PTZ00037 DnaJ_C chaperone prot 99.8 5.1E-21 1.1E-25 150.1 7.0 67 6-78 25-91 (421)
12 PRK14283 chaperone protein Dna 99.8 1E-20 2.3E-25 146.7 7.3 68 8-78 4-71 (378)
13 PRK14287 chaperone protein Dna 99.8 1.2E-20 2.6E-25 146.1 7.6 68 8-78 3-70 (371)
14 PRK14285 chaperone protein Dna 99.8 1.2E-20 2.6E-25 145.8 7.6 69 8-78 2-70 (365)
15 PRK14294 chaperone protein Dna 99.8 1.5E-20 3.1E-25 145.4 8.0 70 7-78 2-71 (366)
16 PRK14277 chaperone protein Dna 99.8 1.6E-20 3.6E-25 146.0 8.0 68 8-77 4-71 (386)
17 PRK14291 chaperone protein Dna 99.8 1.2E-20 2.5E-25 146.6 7.1 68 8-78 2-69 (382)
18 PRK14301 chaperone protein Dna 99.8 1.6E-20 3.4E-25 145.5 7.3 69 8-78 3-71 (373)
19 PRK14297 chaperone protein Dna 99.8 1.5E-20 3.3E-25 145.8 7.0 68 8-77 3-70 (380)
20 KOG0716 Molecular chaperone (D 99.8 1.6E-20 3.5E-25 137.9 6.4 68 8-77 30-97 (279)
21 PRK14299 chaperone protein Dna 99.8 2.4E-20 5.2E-25 140.3 7.6 68 8-78 3-70 (291)
22 PRK14276 chaperone protein Dna 99.8 1.8E-20 4E-25 145.4 6.8 68 8-78 3-70 (380)
23 KOG0718 Molecular chaperone (D 99.8 2.2E-20 4.7E-25 145.5 6.8 77 2-78 2-79 (546)
24 PRK14298 chaperone protein Dna 99.8 2.4E-20 5.3E-25 144.6 7.0 68 8-78 4-71 (377)
25 PRK10767 chaperone protein Dna 99.8 3.6E-20 7.9E-25 143.3 7.8 69 8-78 3-71 (371)
26 PRK14284 chaperone protein Dna 99.8 3.9E-20 8.4E-25 144.1 7.6 68 9-78 1-68 (391)
27 KOG0717 Molecular chaperone (D 99.8 5.2E-20 1.1E-24 143.2 8.1 81 5-86 4-84 (508)
28 PRK14280 chaperone protein Dna 99.8 3.8E-20 8.2E-25 143.5 7.0 67 8-77 3-69 (376)
29 KOG0691 Molecular chaperone (D 99.8 5.9E-20 1.3E-24 137.8 7.4 71 8-80 4-74 (296)
30 PRK14278 chaperone protein Dna 99.8 4.8E-20 1E-24 143.0 7.1 66 9-77 3-68 (378)
31 PRK14281 chaperone protein Dna 99.8 5.2E-20 1.1E-24 143.6 7.3 69 8-78 2-70 (397)
32 KOG0715 Molecular chaperone (D 99.8 1.1E-19 2.4E-24 136.5 7.5 70 8-80 42-111 (288)
33 PRK14289 chaperone protein Dna 99.8 1.7E-19 3.7E-24 140.2 8.1 69 8-78 4-72 (386)
34 smart00271 DnaJ DnaJ molecular 99.8 2.2E-19 4.7E-24 105.3 6.6 59 9-68 1-59 (60)
35 PRK14290 chaperone protein Dna 99.8 1.4E-19 3E-24 139.9 7.0 68 9-77 3-70 (365)
36 TIGR02349 DnaJ_bact chaperone 99.8 1.6E-19 3.5E-24 138.9 6.7 66 10-78 1-66 (354)
37 KOG0719 Molecular chaperone (D 99.8 2E-19 4.4E-24 129.8 5.8 72 6-77 11-82 (264)
38 PRK10266 curved DNA-binding pr 99.8 2.7E-19 5.9E-24 135.4 6.8 67 8-77 3-69 (306)
39 cd06257 DnaJ DnaJ domain or J- 99.8 9.1E-19 2E-23 100.8 6.6 55 10-66 1-55 (55)
40 PRK14300 chaperone protein Dna 99.8 4.3E-19 9.4E-24 137.5 6.5 66 9-77 3-68 (372)
41 KOG0624 dsRNA-activated protei 99.8 8.7E-19 1.9E-23 133.6 7.6 74 5-78 390-464 (504)
42 PRK14292 chaperone protein Dna 99.8 7.7E-19 1.7E-23 136.0 7.0 67 9-78 2-68 (371)
43 PRK14293 chaperone protein Dna 99.8 7.4E-19 1.6E-23 136.2 6.7 68 8-78 2-69 (374)
44 PTZ00341 Ring-infected erythro 99.8 2.2E-18 4.8E-23 143.8 7.6 69 7-78 571-639 (1136)
45 KOG0721 Molecular chaperone (D 99.7 3.7E-18 8.1E-23 122.1 6.4 75 7-83 97-171 (230)
46 PRK05014 hscB co-chaperone Hsc 99.7 1.3E-17 2.8E-22 117.0 7.6 72 9-80 1-77 (171)
47 COG2214 CbpA DnaJ-class molecu 99.7 1.5E-17 3.2E-22 117.7 7.0 70 6-76 3-72 (237)
48 PRK01356 hscB co-chaperone Hsc 99.7 2E-17 4.2E-22 115.6 6.8 71 9-79 2-75 (166)
49 PRK00294 hscB co-chaperone Hsc 99.7 3.1E-17 6.8E-22 115.2 7.7 75 6-80 1-80 (173)
50 PRK03578 hscB co-chaperone Hsc 99.7 4.6E-17 9.9E-22 114.7 7.5 75 6-80 3-82 (176)
51 TIGR03835 termin_org_DnaJ term 99.7 4.4E-17 9.6E-22 133.6 7.5 67 9-78 2-68 (871)
52 PHA03102 Small T antigen; Revi 99.7 1E-16 2.3E-21 110.3 4.4 64 8-77 4-69 (153)
53 KOG0720 Molecular chaperone (D 99.6 3.2E-16 6.9E-21 122.2 6.5 69 8-79 234-302 (490)
54 KOG0722 Molecular chaperone (D 99.5 3.5E-15 7.6E-20 109.4 3.9 70 6-78 30-99 (329)
55 KOG0550 Molecular chaperone (D 99.5 6.9E-15 1.5E-19 114.0 5.1 73 6-79 370-442 (486)
56 PRK09430 djlA Dna-J like membr 99.5 1.1E-14 2.4E-19 108.5 5.5 61 6-66 197-262 (267)
57 PTZ00100 DnaJ chaperone protei 99.5 8.9E-15 1.9E-19 96.3 4.1 54 6-65 62-115 (116)
58 PRK01773 hscB co-chaperone Hsc 99.5 3.1E-14 6.8E-19 100.0 7.1 70 9-78 2-76 (173)
59 KOG0714 Molecular chaperone (D 99.5 2E-14 4.3E-19 105.9 4.4 70 8-78 2-71 (306)
60 COG5407 SEC63 Preprotein trans 99.5 2.8E-14 6.1E-19 111.5 4.9 77 8-84 97-176 (610)
61 PHA02624 large T antigen; Prov 99.4 2.6E-13 5.5E-18 110.1 7.5 61 7-73 9-71 (647)
62 TIGR00714 hscB Fe-S protein as 99.4 1.2E-12 2.6E-17 90.8 7.2 61 20-80 2-65 (157)
63 KOG1150 Predicted molecular ch 99.3 2.8E-12 6.1E-17 91.3 6.7 71 4-75 48-118 (250)
64 COG5269 ZUO1 Ribosome-associat 99.1 5.9E-11 1.3E-15 88.1 3.7 71 8-78 42-115 (379)
65 KOG0568 Molecular chaperone (D 98.7 1.9E-08 4.1E-13 73.5 4.3 54 9-65 47-101 (342)
66 KOG0723 Molecular chaperone (D 98.7 3.2E-08 7E-13 63.9 4.0 55 7-67 54-108 (112)
67 KOG1789 Endocytosis protein RM 98.5 1.1E-07 2.4E-12 81.4 5.4 56 5-65 1277-1336(2235)
68 KOG3192 Mitochondrial J-type c 98.4 5.3E-07 1.1E-11 62.0 5.0 77 5-81 4-85 (168)
69 KOG0431 Auxilin-like protein a 97.9 1.9E-05 4.1E-10 63.1 4.7 51 15-65 394-449 (453)
70 COG1076 DjlA DnaJ-domain-conta 97.5 6.3E-05 1.4E-09 52.9 2.8 56 9-64 113-173 (174)
71 COG1076 DjlA DnaJ-domain-conta 97.4 0.00013 2.8E-09 51.3 2.6 69 10-78 2-75 (174)
72 PF03656 Pam16: Pam16; InterP 97.2 0.00064 1.4E-08 45.6 4.1 52 10-67 59-110 (127)
73 PF14687 DUF4460: Domain of un 93.8 0.16 3.4E-06 33.4 4.5 48 19-66 4-53 (112)
74 PF13446 RPT: A repeated domai 93.1 0.29 6.4E-06 28.3 4.5 27 9-35 5-31 (62)
75 PF11833 DUF3353: Protein of u 91.1 0.67 1.4E-05 33.3 5.2 38 18-65 1-38 (194)
76 KOG0724 Zuotin and related mol 90.2 0.38 8.3E-06 36.8 3.5 56 21-76 4-61 (335)
77 KOG3442 Uncharacterized conser 89.4 1.5 3.2E-05 29.4 5.3 48 12-65 62-109 (132)
78 PF07709 SRR: Seven Residue Re 74.3 2.2 4.9E-05 17.4 1.1 13 53-65 2-14 (14)
79 COG5552 Uncharacterized conser 74.2 17 0.00038 22.2 5.3 32 10-41 4-35 (88)
80 PF12095 DUF3571: Protein of u 58.7 25 0.00054 21.9 4.0 58 1-65 1-61 (83)
81 PF12434 Malate_DH: Malate deh 53.8 20 0.00042 17.5 2.3 18 22-39 9-26 (28)
82 PRK14102 nifW nitrogenase stab 53.7 39 0.00084 22.0 4.4 59 6-64 12-75 (105)
83 PF03206 NifW: Nitrogen fixati 49.5 48 0.001 21.4 4.4 67 6-73 12-85 (105)
84 cd01780 PLC_epsilon_RA Ubiquit 45.4 32 0.00068 21.9 2.9 36 7-42 9-44 (93)
85 cd01388 SOX-TCF_HMG-box SOX-TC 43.3 66 0.0014 18.6 4.3 41 28-75 14-54 (72)
86 PF10041 DUF2277: Uncharacteri 42.7 79 0.0017 19.4 5.7 34 10-43 4-37 (78)
87 KOG2320 RAS effector RIN1 (con 42.5 26 0.00056 29.5 2.8 25 17-41 397-421 (651)
88 PF14706 Tnp_DNA_bind: Transpo 41.7 69 0.0015 18.4 3.9 42 23-68 14-57 (58)
89 PF15178 TOM_sub5: Mitochondri 41.2 57 0.0012 18.1 3.2 24 12-35 2-25 (51)
90 PF08447 PAS_3: PAS fold; Int 40.8 6.8 0.00015 23.1 -0.6 29 8-40 5-34 (91)
91 KOG3960 Myogenic helix-loop-he 40.3 20 0.00042 27.0 1.7 14 52-65 128-141 (284)
92 COG2879 Uncharacterized small 38.3 73 0.0016 18.8 3.5 16 28-43 26-41 (65)
93 COG0089 RplW Ribosomal protein 37.5 32 0.00069 21.9 2.1 21 14-34 25-45 (94)
94 PF07739 TipAS: TipAS antibiot 37.4 79 0.0017 19.8 4.1 49 16-75 51-100 (118)
95 PF02216 B: B domain; InterPr 36.9 82 0.0018 17.9 4.3 29 10-41 12-40 (54)
96 CHL00030 rpl23 ribosomal prote 35.8 36 0.00079 21.5 2.2 21 14-34 23-43 (93)
97 COG4907 Predicted membrane pro 33.8 78 0.0017 26.2 4.2 17 54-70 525-541 (595)
98 PF00076 RRM_1: RNA recognitio 31.9 37 0.00081 18.6 1.7 23 14-36 3-25 (70)
99 TIGR03636 L23_arch archaeal ri 30.3 52 0.0011 20.0 2.2 21 14-34 18-38 (77)
100 cd01390 HMGB-UBF_HMG-box HMGB- 29.7 1.1E+02 0.0023 16.9 4.3 40 29-75 14-53 (66)
101 PF12574 120_Rick_ant: 120 KDa 29.5 25 0.00054 26.2 0.7 53 64-116 30-85 (255)
102 PF04967 HTH_10: HTH DNA bindi 29.3 18 0.0004 20.4 0.0 21 14-34 32-52 (53)
103 PRK08230 tartrate dehydratase 29.2 1.5E+02 0.0033 22.8 5.0 29 53-81 29-57 (299)
104 PRK05738 rplW 50S ribosomal pr 28.8 56 0.0012 20.4 2.2 21 14-34 24-44 (92)
105 cd00084 HMG-box High Mobility 28.5 1.1E+02 0.0023 16.7 4.4 42 27-75 12-53 (66)
106 COG3755 Uncharacterized protei 28.3 1.6E+02 0.0036 19.7 4.4 40 21-69 48-88 (127)
107 PF04949 Transcrip_act: Transc 27.8 1E+02 0.0022 21.4 3.4 25 48-72 62-86 (159)
108 PF10475 DUF2450: Protein of u 27.5 89 0.0019 23.5 3.5 34 23-68 181-214 (291)
109 PF04282 DUF438: Family of unk 26.4 36 0.00079 20.4 1.0 26 15-40 7-32 (71)
110 KOG0906 Phosphatidylinositol 3 25.9 1.3E+02 0.0027 26.1 4.3 56 10-65 625-693 (843)
111 PRK14548 50S ribosomal protein 25.5 70 0.0015 19.8 2.2 21 14-34 25-45 (84)
112 PF14893 PNMA: PNMA 24.7 64 0.0014 25.2 2.3 20 14-33 23-42 (331)
113 PF05781 MRVI1: MRVI1 protein; 24.6 1.3E+02 0.0028 25.1 4.1 25 19-43 186-210 (538)
114 smart00362 RRM_2 RNA recogniti 24.6 85 0.0018 16.6 2.3 20 14-33 4-23 (72)
115 smart00360 RRM RNA recognition 24.2 86 0.0019 16.4 2.3 21 14-34 1-21 (71)
116 PF03671 Ufm1: Ubiquitin fold 23.9 56 0.0012 19.8 1.4 23 5-27 10-32 (76)
117 KOG0527 HMG-box transcription 22.8 1.8E+02 0.0038 22.7 4.4 42 28-76 75-116 (331)
118 cd01766 Ufm1 Urm1-like ubiquit 22.4 86 0.0019 19.1 2.0 22 5-26 10-31 (82)
119 PF00276 Ribosomal_L23: Riboso 22.3 86 0.0019 19.4 2.2 21 14-34 24-44 (91)
120 PF11126 Phage_DsbA: Transcrip 22.3 1.8E+02 0.0039 17.4 3.4 32 28-64 35-66 (69)
121 PF12725 DUF3810: Protein of u 21.3 1.1E+02 0.0023 23.6 2.9 58 9-66 82-148 (318)
122 TIGR00824 EIIA-man PTS system, 20.9 1.8E+02 0.0039 18.6 3.6 33 9-41 27-59 (116)
123 PF11590 DNAPolymera_Pol: DNA 20.8 1.2E+02 0.0025 16.2 2.1 15 50-64 26-40 (41)
124 PRK15321 putative type III sec 20.4 2.5E+02 0.0055 18.1 4.8 26 13-38 25-50 (120)
125 PF01388 ARID: ARID/BRIGHT DNA 20.3 1.2E+02 0.0026 18.3 2.5 9 25-33 79-87 (92)
126 PF11608 Limkain-b1: Limkain b 20.0 1.4E+02 0.003 18.9 2.6 28 12-39 5-32 (90)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.7e-27 Score=178.29 Aligned_cols=73 Identities=38% Similarity=0.618 Sum_probs=66.7
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhh
Q 033459 7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVR 81 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~ 81 (119)
..+|||+||||+++|+.+|||+|||+|+++||||+++. .+++.++|+.|++||+||+||++|+.||+......
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~ 74 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF 74 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence 56899999999999999999999999999999999775 47799999999999999999999999998765443
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-25 Score=169.08 Aligned_cols=76 Identities=41% Similarity=0.630 Sum_probs=69.6
Q ss_pred CCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459 2 AAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV 79 (119)
Q Consensus 2 ~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 79 (119)
+......+|||+||||+++|+..+||+|||+|++++|||||+++ +.|.+.|+.|+.||+||+||.+|+.||+.+..
T Consensus 9 ~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd--p~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 9 AEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD--PNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred hhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 34456679999999999999999999999999999999999876 67999999999999999999999999998754
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.8e-22 Score=156.19 Aligned_cols=69 Identities=38% Similarity=0.542 Sum_probs=63.1
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.+|||+|||+|+++||||+++.+ +.+.++|+.|++||+||+||.+|+.||+...
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~--~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD--KEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 47999999999999999999999999999999997643 4578899999999999999999999999643
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.5e-22 Score=151.57 Aligned_cols=69 Identities=42% Similarity=0.631 Sum_probs=63.4
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459 7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV 80 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 80 (119)
.+..+|+||||+++|+.+|||+|||+|+++|||||+++ +.++|+.|.+||+||+||++|..||+.....
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~ 70 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEG 70 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence 35789999999999999999999999999999999875 7789999999999999999999999977543
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3e-22 Score=155.93 Aligned_cols=74 Identities=36% Similarity=0.569 Sum_probs=65.8
Q ss_pred CCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 2 AAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 2 ~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
+..+....|||+||||+++|+.++||+|||+|++++|||+++.+ +.+.++|+.|++||+||+||.+|+.||+..
T Consensus 2 ~~~~~~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 2 AQREWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD--PAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred CchhhcccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 33444568999999999999999999999999999999997643 567899999999999999999999999965
No 6
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.86 E-value=1.1e-21 Score=116.65 Aligned_cols=64 Identities=42% Similarity=0.807 Sum_probs=59.7
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
|||+||||+++++.++||++|+++++.+|||++.... ..+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999977544 568899999999999999999999998
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=9e-22 Score=152.38 Aligned_cols=68 Identities=34% Similarity=0.591 Sum_probs=62.6
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|+++||||++++ +.+.++|+.|++||+||+||.+|+.||+...
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 4799999999999999999999999999999999752 4578999999999999999999999999653
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.6e-21 Score=150.99 Aligned_cols=69 Identities=43% Similarity=0.649 Sum_probs=63.0
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|+++||||+++.+ +.+.++|++|++||+||+||.+|+.||+...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN--KESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 47999999999999999999999999999999997542 5578999999999999999999999998643
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.8e-21 Score=149.50 Aligned_cols=70 Identities=41% Similarity=0.721 Sum_probs=63.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|+++||||+++.+ ...+.++|++|++||+||+||.+|+.||+...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN-RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc-hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 47999999999999999999999999999999997643 24578999999999999999999999998543
No 10
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.3e-21 Score=149.99 Aligned_cols=74 Identities=42% Similarity=0.663 Sum_probs=65.3
Q ss_pred CCCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459 1 MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRA 76 (119)
Q Consensus 1 m~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 76 (119)
|+-......|||+||||+++|+.++||+|||+|++++|||+++.+ +.+.++|+.|++||+||+||.+|+.||+.
T Consensus 1 ~~~~~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 74 (389)
T PRK14295 1 MSTKDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD--AKAEERFKEISEAYDVLSDEKKRKEYDEA 74 (389)
T ss_pred CCchhccccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 344444567999999999999999999999999999999997643 45789999999999999999999999983
No 11
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.83 E-value=5.1e-21 Score=150.06 Aligned_cols=67 Identities=40% Similarity=0.588 Sum_probs=60.8
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
+...|||+||||+++|+.++||+|||+|++++|||++++ .++|++|++||+||+||.+|..||....
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 346799999999999999999999999999999999642 4799999999999999999999998653
No 12
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1e-20 Score=146.70 Aligned_cols=68 Identities=46% Similarity=0.699 Sum_probs=62.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.+|||+|||+|++++|||++++ +.+.++|+.|++||+||+|+.+|..||+...
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 5799999999999999999999999999999999753 5688999999999999999999999999543
No 13
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.2e-20 Score=146.08 Aligned_cols=68 Identities=43% Similarity=0.710 Sum_probs=62.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|++++|||+++ .+.+.++|+.|++||+||+||.+|+.||+...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~---~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK---APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC---ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 469999999999999999999999999999999965 24578899999999999999999999999643
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.2e-20 Score=145.78 Aligned_cols=69 Identities=38% Similarity=0.582 Sum_probs=62.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|++++|||+++.+ +.+.++|++|++||+||+|+.+|..||+...
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN--KEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 36999999999999999999999999999999997643 5578899999999999999999999999643
No 15
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.5e-20 Score=145.38 Aligned_cols=70 Identities=36% Similarity=0.572 Sum_probs=63.5
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
...|||+||||+++|+.++||+|||+|++++|||+++.. +.+.++|+.|++||+||+||.+|+.||+...
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD--KEAEELFKEAAEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence 357999999999999999999999999999999997643 4578899999999999999999999999653
No 16
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.6e-20 Score=145.95 Aligned_cols=68 Identities=43% Similarity=0.726 Sum_probs=62.6
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
..|||+||||+++|+.++||+|||+|++++|||+++.. +.+.++|+.|++||+||+|+.+|..||+..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD--KEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 36999999999999999999999999999999997643 457889999999999999999999999954
No 17
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.2e-20 Score=146.65 Aligned_cols=68 Identities=43% Similarity=0.684 Sum_probs=62.7
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|++++|||+++. +.+.++|+.|++||+||+||.+|..||+...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 4799999999999999999999999999999999763 4578899999999999999999999999654
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.6e-20 Score=145.54 Aligned_cols=69 Identities=41% Similarity=0.613 Sum_probs=63.2
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|++++|||+++.+ +.+.++|+.|++||+||+||.+|..||+...
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN--PEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC--hHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 47999999999999999999999999999999997643 4578899999999999999999999998653
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.5e-20 Score=145.85 Aligned_cols=68 Identities=43% Similarity=0.683 Sum_probs=62.6
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
..|||+||||+++|+.++||+|||+|++++|||+++.. +.+.++|+.|++||+||+||.+|..||+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G 70 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN--KEAEEKFKEINEAYQVLSDPQKKAQYDQFG 70 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcCHhhhCchhhcC
Confidence 36999999999999999999999999999999997643 558899999999999999999999999864
No 20
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.6e-20 Score=137.93 Aligned_cols=68 Identities=47% Similarity=0.726 Sum_probs=63.5
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
..|+|+||||+++++.++|||+||+|++++|||+++++ +++..+|+.||+||+||+||.+|..||..+
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g 97 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTKRNVYDEYG 97 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhhhhhHHHhh
Confidence 45799999999999999999999999999999998866 668899999999999999999999999974
No 21
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.4e-20 Score=140.32 Aligned_cols=68 Identities=41% Similarity=0.668 Sum_probs=62.5
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|++++|||+++ .+.+.++|+.|++||++|+||.+|..||+...
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~---~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK---SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC---ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 479999999999999999999999999999999975 25578899999999999999999999999654
No 22
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.8e-20 Score=145.43 Aligned_cols=68 Identities=40% Similarity=0.684 Sum_probs=62.4
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|++++|||+++. +.+.++|+.|++||+||+||.+|+.||+...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 4799999999999999999999999999999999763 4578899999999999999999999998543
No 23
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.2e-20 Score=145.53 Aligned_cols=77 Identities=43% Similarity=0.635 Sum_probs=68.5
Q ss_pred CCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 2 AAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVA-TNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 2 ~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~-~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
+..-..+.+||.+|+|+++|+.+|||+|||++++.+||||+. +..+..+++.|++|.+||+||+||.+|+.||....
T Consensus 2 de~e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 2 DEAELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred CccccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 344455669999999999999999999999999999999998 44567788999999999999999999999998654
No 24
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.4e-20 Score=144.62 Aligned_cols=68 Identities=40% Similarity=0.626 Sum_probs=62.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|++++|||+++. +.+.++|+.|++||+||+||.+|+.||+...
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 4699999999999999999999999999999999752 4578899999999999999999999999643
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3.6e-20 Score=143.35 Aligned_cols=69 Identities=42% Similarity=0.676 Sum_probs=62.8
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|++++|||+++.. +.+.++|++|++||++|+|+.+|..||+...
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD--KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--HHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 47999999999999999999999999999999997633 4578899999999999999999999998543
No 26
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.9e-20 Score=144.08 Aligned_cols=68 Identities=38% Similarity=0.599 Sum_probs=62.3
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.|||+||||+++|+.++||+|||+|++++|||++++. +.+.++|+.|++||+||+|+.+|+.||+...
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 3899999999999999999999999999999997643 5578899999999999999999999999653
No 27
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.2e-20 Score=143.17 Aligned_cols=81 Identities=38% Similarity=0.542 Sum_probs=71.7
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhhcCC
Q 033459 5 ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKRP 84 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~~~~ 84 (119)
.+..+.||+||||.++++..+||++||+|++++|||++++. .+.+.++|+.|+.||+|||||..|+.||.....+....
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~-ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR-IEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc-HHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 34567899999999999999999999999999999998754 57799999999999999999999999999877666554
Q ss_pred CC
Q 033459 85 VS 86 (119)
Q Consensus 85 ~~ 86 (119)
.+
T Consensus 83 ~s 84 (508)
T KOG0717|consen 83 NS 84 (508)
T ss_pred CC
Confidence 44
No 28
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.8e-20 Score=143.50 Aligned_cols=67 Identities=43% Similarity=0.697 Sum_probs=61.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
..|||+||||+++|+.++||+|||+|++++|||+++. +.+.++|++|++||+||+||.+|+.||+..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 69 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE---EGADEKFKEISEAYEVLSDDQKRAQYDQFG 69 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhccHhHHHHHHhcC
Confidence 3699999999999999999999999999999999753 457889999999999999999999999954
No 29
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.9e-20 Score=137.84 Aligned_cols=71 Identities=38% Similarity=0.574 Sum_probs=66.4
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV 80 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 80 (119)
..|||.||||..+++..+|+++|+..++++||||||+++. +.+.|+.|.+||+||+|+..|..||..+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~--A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQ--AAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChH--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 6799999999999999999999999999999999998754 9999999999999999999999999977643
No 30
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.8e-20 Score=143.03 Aligned_cols=66 Identities=44% Similarity=0.653 Sum_probs=61.6
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
.|||+||||+++|+.++||+|||+|++++|||+++ .+.+.++|+.|++||+||+||.+|..||+..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~---~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP---DEEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC---cHHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 69999999999999999999999999999999975 2567889999999999999999999999854
No 31
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.2e-20 Score=143.63 Aligned_cols=69 Identities=41% Similarity=0.640 Sum_probs=62.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|++++|||+++.. ..+.++|+.|++||+||+|+.+|..||+...
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN--KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 36999999999999999999999999999999997643 4578899999999999999999999998654
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.1e-19 Score=136.53 Aligned_cols=70 Identities=39% Similarity=0.591 Sum_probs=64.2
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV 80 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 80 (119)
..|||+||||+++|+..|||+||++|++++|||.+.+ ..+.++|++|.+||+||+|+.+|..||..+...
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~---~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD---KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC---cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3399999999999999999999999999999998654 378999999999999999999999999987754
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.7e-19 Score=140.24 Aligned_cols=69 Identities=38% Similarity=0.598 Sum_probs=63.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.+|||+|||+|++++|||+++.. +.+.++|+.|++||++|+||.+|+.||....
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD--KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 57999999999999999999999999999999997643 4588899999999999999999999999643
No 34
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.80 E-value=2.2e-19 Score=105.27 Aligned_cols=59 Identities=44% Similarity=0.747 Sum_probs=54.2
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCch
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPH 68 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~ 68 (119)
+|||+||||+++++.++||++|+++++.+|||++... .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999997643 5678899999999999999985
No 35
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.4e-19 Score=139.87 Aligned_cols=68 Identities=40% Similarity=0.690 Sum_probs=62.4
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
.|||+||||+++|+.++||+|||+|++++|||+++.+ ...+.++|+.|++||+||+|+.+|..||...
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G 70 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQKRRQYDQTG 70 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhhhhhhcccC
Confidence 6999999999999999999999999999999997643 2358899999999999999999999999854
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.79 E-value=1.6e-19 Score=138.95 Aligned_cols=66 Identities=42% Similarity=0.718 Sum_probs=60.8
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
|||+||||+++|+.++||+|||+|++++|||+++ .+.+.++|+.|++||+||+|+.+|..||....
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~---~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK---DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC---CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 7999999999999999999999999999999975 34578899999999999999999999998543
No 37
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2e-19 Score=129.84 Aligned_cols=72 Identities=38% Similarity=0.575 Sum_probs=66.7
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
+...|+|+||||.++|+..+|++||++|++++|||+++......+...|++|+.||.||+|..+|+.||...
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG 82 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETG 82 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 455699999999999999999999999999999999886667789999999999999999999999999854
No 38
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.78 E-value=2.7e-19 Score=135.44 Aligned_cols=67 Identities=37% Similarity=0.632 Sum_probs=61.6
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
..|||+||||+++++.++||+|||+|++++|||++.. ..+.++|+.|++||++|+|+.+|..||...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~---~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE---PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 3699999999999999999999999999999999642 457889999999999999999999999854
No 39
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.78 E-value=9.1e-19 Score=100.83 Aligned_cols=55 Identities=44% Similarity=0.739 Sum_probs=51.0
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCC
Q 033459 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSD 66 (119)
Q Consensus 10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d 66 (119)
|||+||||+++++.++||++|+++++++|||++... ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999997643 6688999999999999986
No 40
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.3e-19 Score=137.46 Aligned_cols=66 Identities=38% Similarity=0.656 Sum_probs=61.0
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
.|||+||||+++|+.++||+|||+|++++|||+++. ..+.++|+.|++||++|+|+.+|..||+..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 68 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---KDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence 699999999999999999999999999999999752 347789999999999999999999999954
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.77 E-value=8.7e-19 Score=133.60 Aligned_cols=74 Identities=38% Similarity=0.600 Sum_probs=67.5
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 5 ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ-KEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.+..+|||+||||.++|+..||.+|||+++.++|||-+.+.+ +..+.++|..|..|-+||+||++|+.||....
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED 464 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence 467899999999999999999999999999999999887554 66788999999999999999999999998643
No 42
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=7.7e-19 Score=135.97 Aligned_cols=67 Identities=43% Similarity=0.685 Sum_probs=61.8
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.|||+||||+++|+.++||+|||+|++++|||+++ ...+.++|+.|++||+||+||.+|+.||....
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~---~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK---EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC---ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 59999999999999999999999999999999975 24578899999999999999999999999543
No 43
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=7.4e-19 Score=136.22 Aligned_cols=68 Identities=44% Similarity=0.716 Sum_probs=61.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++|+.++||+|||+|++++|||+++. ..+.++|+.|++||+||+||.+|+.||....
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE---PGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---cCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 3699999999999999999999999999999999753 4477899999999999999999999998543
No 44
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.75 E-value=2.2e-18 Score=143.80 Aligned_cols=69 Identities=33% Similarity=0.521 Sum_probs=62.9
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
...+||+||||+++|+..+||+|||+|++++|||++++. .+.++|+.|++||+||+||.+|..||....
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~---~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~ 639 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN---EGFHKFKKINEAYQILGDIDKKKMYNKFGY 639 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence 457999999999999999999999999999999998753 477899999999999999999999998543
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.7e-18 Score=122.08 Aligned_cols=75 Identities=32% Similarity=0.451 Sum_probs=65.7
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhhcC
Q 033459 7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKR 83 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~~~ 83 (119)
..-|+||||||+++++.+|||+|||+|++++||||++.. ++.++.|..|++||+.|+|+..|+.|........++
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq 171 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQ 171 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCcc
Confidence 456999999999999999999999999999999997643 567788999999999999999999999966544433
No 46
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.73 E-value=1.3e-17 Score=117.03 Aligned_cols=72 Identities=29% Similarity=0.516 Sum_probs=62.3
Q ss_pred cCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459 9 SSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV 80 (119)
Q Consensus 9 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 80 (119)
.|||+||||++. ++..+|+++|+++++++|||++.... ...+.+.+..||+||++|+||.+|..|+..+.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~ 77 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF 77 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence 489999999996 78899999999999999999986432 2346778999999999999999999999877643
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.5e-17 Score=117.66 Aligned_cols=70 Identities=43% Similarity=0.727 Sum_probs=63.9
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRA 76 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 76 (119)
....+||+||||+++++..+|+++||++++++|||+++.... .+.+.|..|++||++|+|+..|..||..
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 445799999999999999999999999999999999875433 5889999999999999999999999985
No 48
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.71 E-value=2e-17 Score=115.60 Aligned_cols=71 Identities=31% Similarity=0.405 Sum_probs=61.0
Q ss_pred cCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-ccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459 9 SSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATN-QKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV 79 (119)
Q Consensus 9 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 79 (119)
.|||+||||++. ++..+|+++|+++++++|||++... ....+.+.+..|++||+||+||.+|+.|+..+.+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g 75 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN 75 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence 589999999987 7899999999999999999997632 2233456788999999999999999999987754
No 49
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.71 E-value=3.1e-17 Score=115.20 Aligned_cols=75 Identities=28% Similarity=0.440 Sum_probs=65.5
Q ss_pred CCccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459 6 SSSSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV 80 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 80 (119)
+...|||++|||++. ++..+|+++|+++++++|||++.... +..+.+.+..||+||+||+||.+|+.|+..+.+.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~ 80 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGH 80 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence 457899999999997 77899999999999999999986432 3456778999999999999999999999988753
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=4.6e-17 Score=114.68 Aligned_cols=75 Identities=33% Similarity=0.486 Sum_probs=63.3
Q ss_pred CCccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459 6 SSSSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV 80 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 80 (119)
+...|||+||||++. ++..+|+++|+++++++|||++.... +..+.+.+..||+||++|+||.+|..|...+.+.
T Consensus 3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV 82 (176)
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence 345799999999985 68999999999999999999987432 2234566799999999999999999999977744
No 51
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.69 E-value=4.4e-17 Score=133.55 Aligned_cols=67 Identities=45% Similarity=0.664 Sum_probs=61.7
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.|||+||||+++|+..+||++||+|++++|||++.. +.+.++|+.|++||++|+||.+|..||....
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 699999999999999999999999999999999654 4577899999999999999999999998653
No 52
>PHA03102 Small T antigen; Reviewed
Probab=99.65 E-value=1e-16 Score=110.31 Aligned_cols=64 Identities=25% Similarity=0.352 Sum_probs=57.7
Q ss_pred ccCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 8 SSSLYDVLGIPVSA--DGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 8 ~~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
...+|+||||+++| +..+||+|||++++++|||+.+ ..++|+.|++||++|+|+.+|..||...
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg------~~e~~k~in~Ay~~L~d~~~r~~yd~~g 69 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG------DEEKMKELNTLYKKFRESVKSLRDLDGE 69 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc------hhHHHHHHHHHHHHHhhHHHhccccccC
Confidence 34689999999999 9999999999999999999943 3468999999999999999999999854
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.2e-16 Score=122.17 Aligned_cols=69 Identities=29% Similarity=0.488 Sum_probs=64.7
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV 79 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 79 (119)
.+|+|.+|||+.+++.++||+.||+++..+||||+. .+.+.+.|+.|+.||++|+|+.+|..||..+..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~---~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM---IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC---ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 579999999999999999999999999999999964 688999999999999999999999999997753
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.5e-15 Score=109.41 Aligned_cols=70 Identities=43% Similarity=0.641 Sum_probs=63.4
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.+..|+|+||||.++++..+|.+|||+|++++|||++.+.+ ..+.|..|..||++|.|...|..||-.+.
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e---~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE---SKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch---hhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 45679999999999999999999999999999999987543 44899999999999999999999998765
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.9e-15 Score=113.99 Aligned_cols=73 Identities=38% Similarity=0.607 Sum_probs=66.6
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV 79 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 79 (119)
+...|||.||||.+.++..+||++||++++.+|||++..+ +.++..+|+.|-+||.||+||.+|..||....-
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~kr~r~dsg~dl 442 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDL 442 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHHHhhcccccch
Confidence 5578999999999999999999999999999999998866 566888999999999999999999999986543
No 56
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.53 E-value=1.1e-14 Score=108.51 Aligned_cols=61 Identities=36% Similarity=0.577 Sum_probs=53.2
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----ccHHHHHHHHHHHHHHHHcCC
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATN-----QKEMSANEFIKIHAAYSTLSD 66 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~~f~~i~~Ay~~L~d 66 (119)
....++|+||||+++++.++||++||+|++++|||++... ..+.+.++|+.|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 3446999999999999999999999999999999997532 235688999999999999984
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.53 E-value=8.9e-15 Score=96.29 Aligned_cols=54 Identities=30% Similarity=0.298 Sum_probs=47.6
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcC
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~ 65 (119)
+...++|+||||+++++.++||++||+|++++|||+. +..+.|.+|++||++|.
T Consensus 62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg------Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG------GSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC------CCHHHHHHHHHHHHHHh
Confidence 4457999999999999999999999999999999983 23457899999999985
No 58
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=3.1e-14 Score=100.04 Aligned_cols=70 Identities=24% Similarity=0.396 Sum_probs=62.5
Q ss_pred cCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 9 SSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 9 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.|||++|||++. ++...|+++|+.|.+.+|||++.... +..+.+....||+||.+|+||.+|+.|-..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999987 89999999999999999999987442 34566788999999999999999999999877
No 59
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2e-14 Score=105.94 Aligned_cols=70 Identities=43% Similarity=0.639 Sum_probs=63.8
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|+|+||+|.++++..+|++||+++++++|||+++.. ...+..+|.+|.+||++|+|+.+|..||....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46899999999999999999999999999999998766 55666689999999999999999999999765
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.49 E-value=2.8e-14 Score=111.54 Aligned_cols=77 Identities=26% Similarity=0.391 Sum_probs=68.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhhcCC
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVAT---NQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKRP 84 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~~~~ 84 (119)
.-|+||||||+.+++..+||++||+|+.++||||.+. ..+...++.+..|++||..|+|...|+.|-.......++.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQh 176 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQH 176 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCcc
Confidence 3589999999999999999999999999999999885 5667788999999999999999999999998766555443
No 61
>PHA02624 large T antigen; Provisional
Probab=99.44 E-value=2.6e-13 Score=110.09 Aligned_cols=61 Identities=28% Similarity=0.465 Sum_probs=55.7
Q ss_pred CccCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHH
Q 033459 7 SSSSLYDVLGIPVSA--DGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANY 73 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 73 (119)
+..++|+||||+++| +..+||+|||++++++|||+. +..++|+.|++||++|+|+.+|..|
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg------Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG------GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC------CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 346899999999999 999999999999999999983 2357899999999999999999998
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.39 E-value=1.2e-12 Score=90.76 Aligned_cols=61 Identities=30% Similarity=0.480 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc---ccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459 20 SADGNEIKAAYRRLARTCHPDVVATN---QKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV 80 (119)
Q Consensus 20 ~as~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 80 (119)
..+..+|+++|+++++++|||++... .+..+.+.+..||+||++|+||.+|+.|+..+.+.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~ 65 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI 65 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence 35789999999999999999997643 23457788999999999999999999999988743
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.8e-12 Score=91.26 Aligned_cols=71 Identities=24% Similarity=0.351 Sum_probs=62.1
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
++-.+-|+|+||.|.|.++.++||+.||+|++.+|||+++++ .+.+...|..|.+||..|-|+..|..-+.
T Consensus 48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd-~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD-AERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc-HHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 344677999999999999999999999999999999999865 46688999999999999999986665443
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.9e-11 Score=88.14 Aligned_cols=71 Identities=28% Similarity=0.351 Sum_probs=60.9
Q ss_pred ccCccccccCCC---CCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPV---SADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~---~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|+|.+|||+. .++..+|.++.++.+.+||||+.......+....|..|+.||+||+|+.+|..||.--.
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 368999999985 48889999999999999999997533344567889999999999999999999997543
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.9e-08 Score=73.55 Aligned_cols=54 Identities=33% Similarity=0.640 Sum_probs=48.0
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHH-HcC
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYS-TLS 65 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~-~L~ 65 (119)
..+|.||||..+|+.++|+.+|..|++.+|||... .+...++|.+|.+||. ||+
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs---~~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGS---EEADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC---ccccHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999743 3556789999999999 777
No 66
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.2e-08 Score=63.85 Aligned_cols=55 Identities=33% Similarity=0.300 Sum_probs=45.0
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCc
Q 033459 7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDP 67 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~ 67 (119)
..+.-=.||||+++++.+.||+++|+++..+|||+- +.--.-..||+|+++|...
T Consensus 54 sr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~G------GSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 54 SRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRG------GSPYLASKINEAKDLLEGT 108 (112)
T ss_pred chHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCC------CCHHHHHHHHHHHHHHhcc
Confidence 334445699999999999999999999999999983 3344567899999999754
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.1e-07 Score=81.38 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=47.0
Q ss_pred CCCccCccccccCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcC
Q 033459 5 ASSSSSLYDVLGIPVS----ADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~----as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~ 65 (119)
.++..+-|+||.|+.+ ...+.||++|++|+.+|||||+| +-.+.|..|++||+.|+
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP-----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP-----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc-----hHHHHHHHHHHHHHHHH
Confidence 3455678999999854 45588999999999999999975 24678999999999998
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.3e-07 Score=62.03 Aligned_cols=77 Identities=27% Similarity=0.490 Sum_probs=62.2
Q ss_pred CCCccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---ccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459 5 ASSSSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATN---QKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV 79 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 79 (119)
.....+||.++|.... .+++.++..|....+++|||+.... ....+.+....|++||.+|.||..|+.|-..+.+
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 4566799999987654 6777788899999999999985411 2235778899999999999999999999988876
Q ss_pred hh
Q 033459 80 VR 81 (119)
Q Consensus 80 ~~ 81 (119)
..
T Consensus 84 ~e 85 (168)
T KOG3192|consen 84 QE 85 (168)
T ss_pred CC
Confidence 33
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.88 E-value=1.9e-05 Score=63.11 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=37.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----ccHHHHHHHHHHHHHHHHcC
Q 033459 15 LGIPVSADGNEIKAAYRRLARTCHPDVVATN-----QKEMSANEFIKIHAAYSTLS 65 (119)
Q Consensus 15 Lgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~~f~~i~~Ay~~L~ 65 (119)
++|..-++.++||++|||.++.+||||.... .+-.+++.|..+++|++...
T Consensus 394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred CchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445558999999999999999999998744 23355666777777776543
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=6.3e-05 Score=52.85 Aligned_cols=56 Identities=34% Similarity=0.545 Sum_probs=47.2
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-----cHHHHHHHHHHHHHHHHc
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ-----KEMSANEFIKIHAAYSTL 64 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~~~f~~i~~Ay~~L 64 (119)
.+.|.+|++....+..+|+++|+++....|||+..... ...+.++++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999865322 345677888899998754
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00013 Score=51.31 Aligned_cols=69 Identities=32% Similarity=0.517 Sum_probs=55.1
Q ss_pred CccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 10 SLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 10 ~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
+++.++|+++. ...+.++..|+.+.+.+|||+..... ...+.+.+..++.||.+|.+|-.|..|--.+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 46666777665 45677999999999999999976332 23356789999999999999999999987665
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.18 E-value=0.00064 Score=45.64 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=38.8
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCc
Q 033459 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDP 67 (119)
Q Consensus 10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~ 67 (119)
.-..||||++..+.++|.+.|.+|...++|++ .+....-..|..|.+.|...
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~k------GGSfYLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSK------GGSFYLQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCC------TS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCc------CCCHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999997 44666777899999988743
No 73
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=93.78 E-value=0.16 Score=33.39 Aligned_cols=48 Identities=15% Similarity=0.334 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcc--cHHHHHHHHHHHHHHHHcCC
Q 033459 19 VSADGNEIKAAYRRLARTCHPDVVATNQ--KEMSANEFIKIHAAYSTLSD 66 (119)
Q Consensus 19 ~~as~~~Ik~ayr~l~~~~HPDk~~~~~--~~~~~~~f~~i~~Ay~~L~d 66 (119)
+..+..+++.+.|...+++|||.+...+ +....+-++.|+.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 3456788999999999999999876432 23333445666655555543
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=93.09 E-value=0.29 Score=28.30 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=24.5
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHH
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLAR 35 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~ 35 (119)
.+-|++|||+++++.+.|-.+|+..+.
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999998887
No 75
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=91.07 E-value=0.67 Score=33.26 Aligned_cols=38 Identities=32% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcC
Q 033459 18 PVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65 (119)
Q Consensus 18 ~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~ 65 (119)
+++|+.+||.+|+.++..+|--| .+.-..|..||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd----------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD----------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHH
Confidence 47899999999999999999555 235677999999654
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=0.38 Score=36.81 Aligned_cols=56 Identities=30% Similarity=0.416 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC--cccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459 21 ADGNEIKAAYRRLARTCHPDVVAT--NQKEMSANEFIKIHAAYSTLSDPHKRANYDRA 76 (119)
Q Consensus 21 as~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 76 (119)
++..+|+.+|+..++..||++... .......+.++.|.+||.||++...|...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 567889999999999999998531 01113456789999999999986554455443
No 77
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.38 E-value=1.5 Score=29.38 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=38.2
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcC
Q 033459 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65 (119)
Q Consensus 12 Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~ 65 (119)
-.||+|++..+.++|.+.|..|...+.+.+ .+....-..|-.|-+-|.
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdksk------GGSFYLQSKVfRAkErld 109 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSK------GGSFYLQSKVFRAKERLD 109 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCccc------CcceeehHHHHHHHHHHH
Confidence 579999999999999999999999887775 334445566777777766
No 78
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=74.26 E-value=2.2 Score=17.40 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHcC
Q 033459 53 EFIKIHAAYSTLS 65 (119)
Q Consensus 53 ~f~~i~~Ay~~L~ 65 (119)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888764
No 79
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=74.19 E-value=17 Score=22.19 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=26.3
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033459 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDV 41 (119)
Q Consensus 10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk 41 (119)
|.-+++|+.|-++..||+.+-++.++++.--.
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT 35 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTT 35 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 45578999999999999999988888874443
No 80
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=58.71 E-value=25 Score=21.87 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=29.2
Q ss_pred CCCCCCCccCccccccCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcC
Q 033459 1 MAAAASSSSSLYDVLGIPVS---ADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65 (119)
Q Consensus 1 m~~~~~~~~~~Y~iLgv~~~---as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~ 65 (119)
|+.|.+...|+|=||.=... .+.+|+....+..... .++- +...++|..+.++-+-|.
T Consensus 1 M~d~lm~~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~-~~~L------P~dL~~~~s~~~qa~~Ll 61 (83)
T PF12095_consen 1 MSDPLMYQEDHYVVLEPGQPEQFLTPEELLEKLKEWLQN-QDDL------PPDLAKFSSVEEQAQYLL 61 (83)
T ss_dssp -----S-----EEEEESSS-SEEE-HHHHHHHHHHHHHH-TTTS-------HHHHH---HHHHHHHHH
T ss_pred CCchhhhccCCEEEecCCCCcccCCHHHHHHHHHHHHHc-CCCC------CHHHHhCCCHHHHHHHHH
Confidence 88889999999999985433 6899999998888887 5553 444555666655555443
No 81
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=53.81 E-value=20 Score=17.54 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 033459 22 DGNEIKAAYRRLARTCHP 39 (119)
Q Consensus 22 s~~~Ik~ayr~l~~~~HP 39 (119)
..++.|...|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347788999999999983
No 82
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=53.74 E-value=39 Score=21.95 Aligned_cols=59 Identities=10% Similarity=0.246 Sum_probs=36.6
Q ss_pred CCccCccccccCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHc
Q 033459 6 SSSSSLYDVLGIPVS-----ADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTL 64 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~-----as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L 64 (119)
++-.+|++.|||+-+ ++.=-|-++|...+.+.+.+.....+.+.....-..+.+||+..
T Consensus 12 ssAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~dF 75 (105)
T PRK14102 12 VDAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQVF 75 (105)
T ss_pred ccHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455689999999865 34445778888877765544321222333344455678888853
No 83
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=49.50 E-value=48 Score=21.44 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=42.6
Q ss_pred CCccCccccccCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHc--CCchHHHHH
Q 033459 6 SSSSSLYDVLGIPVS-----ADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTL--SDPHKRANY 73 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~-----as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L--~d~~~R~~Y 73 (119)
++-.+|++.|||+-+ +..=-|-++|...+...++.. ...+.+.....-..|.+||+.. |+|..-+.+
T Consensus 12 ~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~-~~~e~~~~~~~R~~L~~AY~dFv~S~p~~ekvF 85 (105)
T PF03206_consen 12 SSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAP-GLSEEEDWAAYRRALERAYQDFVTSTPLEEKVF 85 (105)
T ss_pred cCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHHHHHHhcCChhhhHHH
Confidence 455689999999865 455568889998888886641 1222333444455688899854 444443333
No 84
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=45.41 E-value=32 Score=21.86 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=25.5
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 033459 7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVV 42 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~ 42 (119)
.+..+|.||.++...+..+|-+.=--.+++.+||-.
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 456789999999987777755554445666677753
No 85
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=43.33 E-value=66 Score=18.63 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 28 AAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 28 ~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
+..+..++.-||+. ...+....|.+.|..|++..+..-++.
T Consensus 14 ~~~r~~~~~~~p~~-------~~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLK-------ENRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566677789985 134567889999999998776655544
No 86
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=42.71 E-value=79 Score=19.35 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=26.9
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 033459 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVA 43 (119)
Q Consensus 10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~ 43 (119)
|.-.+.|+.|-++.+||+.|=.+.++|..--..+
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~P 37 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKP 37 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCc
Confidence 3445678889999999999999999988655433
No 87
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.46 E-value=26 Score=29.53 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCC
Q 033459 17 IPVSADGNEIKAAYRRLARTCHPDV 41 (119)
Q Consensus 17 v~~~as~~~Ik~ayr~l~~~~HPDk 41 (119)
++..+.-++||.+++++.+.|||.+
T Consensus 397 ~Ps~~~mEqvk~k~~~m~r~YSP~k 421 (651)
T KOG2320|consen 397 TPSDVLMEQVKQKFTAMQRRYSPSK 421 (651)
T ss_pred CCcHHHHHHHHHHHHHHHHhhChHH
Confidence 3455678889999999999999996
No 88
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=41.68 E-value=69 Score=18.38 Aligned_cols=42 Identities=17% Similarity=0.354 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHH--HhCCCCCCCcccHHHHHHHHHHHHHHHHcCCch
Q 033459 23 GNEIKAAYRRLAR--TCHPDVVATNQKEMSANEFIKIHAAYSTLSDPH 68 (119)
Q Consensus 23 ~~~Ik~ayr~l~~--~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~ 68 (119)
..-+.+++.+++. .-||.. ..+.+-+-...+..||..|.|+.
T Consensus 14 D~Rl~~Rl~~l~~~la~~p~~----Sip~a~~~wa~tkaAYRF~~N~~ 57 (58)
T PF14706_consen 14 DKRLTRRLVKLAESLAEKPGA----SIPQACQDWAETKAAYRFFRNPR 57 (58)
T ss_dssp SHHHHHHHHHHHHHHHHTTTS-----HHHHTT-HHHHHHHHHHHT-TT
T ss_pred cchHHHHHHHHHHHHHHCCCC----ccchhccCHHHHHHHHHhhcCCC
Confidence 3456777877765 457774 45666777888999999999874
No 89
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=41.23 E-value=57 Score=18.08 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=19.3
Q ss_pred cccccCCCCCCHHHHHHHHHHHHH
Q 033459 12 YDVLGIPVSADGNEIKAAYRRLAR 35 (119)
Q Consensus 12 Y~iLgv~~~as~~~Ik~ayr~l~~ 35 (119)
|.+=|+.|..+++|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 567789999999999998876443
No 90
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=40.79 E-value=6.8 Score=23.06 Aligned_cols=29 Identities=31% Similarity=0.676 Sum_probs=19.5
Q ss_pred ccCccccccCCCCCCHHHH-HHHHHHHHHHhCCC
Q 033459 8 SSSLYDVLGIPVSADGNEI-KAAYRRLARTCHPD 40 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~I-k~ayr~l~~~~HPD 40 (119)
+.++++|||+++ +++ ...........|||
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpd 34 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPD 34 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHH
Confidence 457889999865 555 55566677899999
No 91
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=40.29 E-value=20 Score=27.03 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHcC
Q 033459 52 NEFIKIHAAYSTLS 65 (119)
Q Consensus 52 ~~f~~i~~Ay~~L~ 65 (119)
.+.+.||+|||+|+
T Consensus 128 RRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 128 RRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 46889999999986
No 92
>COG2879 Uncharacterized small protein [Function unknown]
Probab=38.32 E-value=73 Score=18.77 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCCCCC
Q 033459 28 AAYRRLARTCHPDVVA 43 (119)
Q Consensus 28 ~ayr~l~~~~HPDk~~ 43 (119)
..|.+-+++.|||+.+
T Consensus 26 dnYVehmr~~hPd~p~ 41 (65)
T COG2879 26 DNYVEHMRKKHPDKPP 41 (65)
T ss_pred HHHHHHHHHhCcCCCc
Confidence 3577888999999855
No 93
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=37.51 E-value=32 Score=21.86 Aligned_cols=21 Identities=38% Similarity=0.309 Sum_probs=17.6
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
+|-|.++|+..+||+|..++-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567889999999999987764
No 94
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=37.45 E-value=79 Score=19.77 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=26.6
Q ss_pred cCCCCC-CHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 16 GIPVSA-DGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 16 gv~~~a-s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
||+|+. ...+|-+.+..++..+++. ....+..|.+.| +.||.-+..|+.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~---------~~~~~~~l~~~y--~~~~~~~~~~~~ 100 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG---------DPELLRGLAQMY--VEDPRFAAMYDK 100 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------------HHHHHHHHHHT--TSTHHHHHHHG-
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHHH--HcCHHHHhhccc
Confidence 344432 3344666666666666653 233566677777 677887887774
No 95
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=36.87 E-value=82 Score=17.88 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=19.0
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033459 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDV 41 (119)
Q Consensus 10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk 41 (119)
-||+||+++.-. ++=|..|-+ .++-||+.
T Consensus 12 AFY~vl~~~nLt--eeQrn~yI~-~lKddPs~ 40 (54)
T PF02216_consen 12 AFYEVLHMPNLT--EEQRNGYIQ-SLKDDPSR 40 (54)
T ss_dssp HHHHHHCSTTS---HHHHHHHHH-HHHH-GCC
T ss_pred HHHHHHcCCCcC--HHHHHhHHH-HHhhChHH
Confidence 489999986543 444666665 56778986
No 96
>CHL00030 rpl23 ribosomal protein L23
Probab=35.78 E-value=36 Score=21.48 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.7
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
+|-|+++|+..+||+|..++-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567899999999999987764
No 97
>COG4907 Predicted membrane protein [Function unknown]
Probab=33.78 E-value=78 Score=26.15 Aligned_cols=17 Identities=18% Similarity=-0.109 Sum_probs=9.5
Q ss_pred HHHHHHHHHHcCCchHH
Q 033459 54 FIKIHAAYSTLSDPHKR 70 (119)
Q Consensus 54 f~~i~~Ay~~L~d~~~R 70 (119)
-..|.+|+..+-+.+.-
T Consensus 525 ~dkVvkam~~~~~~e~i 541 (595)
T COG4907 525 SDKVVKAMRKALDMEII 541 (595)
T ss_pred HHHHHHHHHHhCcHhHh
Confidence 44566777665544433
No 98
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=31.88 E-value=37 Score=18.61 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=18.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLART 36 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~~~ 36 (119)
|=+|+++++.++|+..|......
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 45789999999999998765443
No 99
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=30.28 E-value=52 Score=19.98 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=17.8
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
++-|++.++..+||++..++-
T Consensus 18 ~F~V~~~anK~eIK~avE~lf 38 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLF 38 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467899999999999988763
No 100
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=29.66 E-value=1.1e+02 Score=16.91 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 29 AYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 29 ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
..+..++.-||+. ...+....|.+.|..|++..+..-.+.
T Consensus 14 ~~r~~~~~~~p~~-------~~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 14 EQRPKLKKENPDA-------SVTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHCcCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455566778884 145678889999999996655554444
No 101
>PF12574 120_Rick_ant: 120 KDa Rickettsia surface antigen; InterPro: IPR020954 This domain family is found in bacteria, and is approximately 40 amino acids in length. This family is a Rickettsia surface antigen of 120 kDa which may be used as an antigen for immune response against the bacterial species [].
Probab=29.46 E-value=25 Score=26.18 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=27.1
Q ss_pred cCCchHHHHHHHHhHhhhcCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCcccc
Q 033459 64 LSDPHKRANYDRALFVVRKRPVSSFSSSSL---SSEPMGSMSRFSGNFTTRNWETD 116 (119)
Q Consensus 64 L~d~~~R~~YD~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~~ 116 (119)
|+||..|..+|..+........-+.-.... -...++...+|.|+|..=.|+.-
T Consensus 30 ~~n~~~r~~i~~a~e~~e~K~~le~iei~GY~Ni~~s~sa~~~y~ggFk~~~W~~~ 85 (255)
T PF12574_consen 30 LGNPANRELIDKALESPETKKKLEGIEIAGYKNIHSSYSAANGYQGGFKPMQWENQ 85 (255)
T ss_pred hcChhhHHHHHHhhcCHHHHHHHHhhhhhhhhhhhhhhhhhhhccCCccccccccc
Confidence 588999998888765332221100000000 01112223457788888888753
No 102
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=29.28 E-value=18 Score=20.36 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=11.1
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
.|||++.+-..-|+++-++++
T Consensus 32 ~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 32 ELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HhCCCHHHHHHHHHHHHHHHh
Confidence 355555555555555555543
No 103
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=29.19 E-value=1.5e+02 Score=22.78 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhHhhh
Q 033459 53 EFIKIHAAYSTLSDPHKRANYDRALFVVR 81 (119)
Q Consensus 53 ~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~ 81 (119)
....|.+|++.-.+|..|..++..+...+
T Consensus 29 v~~al~~a~~~E~s~~ak~~L~~ileN~~ 57 (299)
T PRK08230 29 VTAKLKELKDAETSPLAKIIYDTMFENQQ 57 (299)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 46779999999999999999999886543
No 104
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=28.81 E-value=56 Score=20.44 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=17.3
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
+|-|++.++..+||++..++-
T Consensus 24 ~F~V~~~a~K~eIK~aie~lf 44 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKLF 44 (92)
T ss_pred EEEECCCCCHHHHHHHHHHHc
Confidence 466889999999999987764
No 105
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=28.51 E-value=1.1e+02 Score=16.69 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
.+.++..++.-||+.. ..+....|.+.|..|++..+..-.+.
T Consensus 12 ~~~~~~~~~~~~~~~~-------~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS-------VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556667778888841 45577889999999997555444443
No 106
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.30 E-value=1.6e+02 Score=19.71 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHcCCchH
Q 033459 21 ADGNEIKAAYRRLARTCH-PDVVATNQKEMSANEFIKIHAAYSTLSDPHK 69 (119)
Q Consensus 21 as~~~Ik~ayr~l~~~~H-PDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~ 69 (119)
.-..++.++|+.+.+..+ +++ ....+.-+.||=...|...
T Consensus 48 ~aDa~LN~AY~~ll~~l~~~~~---------~~aL~kaQRAWi~fRDadC 88 (127)
T COG3755 48 AADAELNKAYKALLKRLQDSPR---------TKALQKAQRAWIAFRDADC 88 (127)
T ss_pred HHHHHHHHHHHHHHHHhccChH---------HHHHHHHHHHHHHHhhHhH
Confidence 346789999999999888 664 1145666777766665543
No 107
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=27.77 E-value=1e+02 Score=21.40 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHH
Q 033459 48 EMSANEFIKIHAAYSTLSDPHKRAN 72 (119)
Q Consensus 48 ~~~~~~f~~i~~Ay~~L~d~~~R~~ 72 (119)
+...++...|.++.++|.||.++..
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv 86 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEV 86 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHH
Confidence 5567788999999999999987653
No 108
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.48 E-value=89 Score=23.47 Aligned_cols=34 Identities=18% Similarity=0.505 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCch
Q 033459 23 GNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPH 68 (119)
Q Consensus 23 ~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~ 68 (119)
.+.|...+.+++..+.|+ .+..|.+||..|++..
T Consensus 181 ~~~ld~~l~~~~~~Fd~~------------~Y~~v~~AY~lLgk~~ 214 (291)
T PF10475_consen 181 EEQLDSDLSKVCQDFDPD------------KYSKVQEAYQLLGKTQ 214 (291)
T ss_pred HHHHHHHHHHHHHhCCHH------------HHHHHHHHHHHHhhhH
Confidence 345667777777777776 4889999999999653
No 109
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=26.40 E-value=36 Score=20.43 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhCCC
Q 033459 15 LGIPVSADGNEIKAAYRRLARTCHPD 40 (119)
Q Consensus 15 Lgv~~~as~~~Ik~ayr~l~~~~HPD 40 (119)
+.|..+.+.++||+.|.++.....|-
T Consensus 7 ~~Lh~G~~~e~vk~~F~~~~~~Vs~~ 32 (71)
T PF04282_consen 7 KRLHEGEDPEEVKEEFKKLFSDVSAS 32 (71)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCCHH
Confidence 45667789999999999988877665
No 110
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.86 E-value=1.3e+02 Score=26.13 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=42.8
Q ss_pred CccccccCCC---------CCCHHHHHHHHHH---HHHHhCCCCCCC-cccHHHHHHHHHHHHHHHHcC
Q 033459 10 SLYDVLGIPV---------SADGNEIKAAYRR---LARTCHPDVVAT-NQKEMSANEFIKIHAAYSTLS 65 (119)
Q Consensus 10 ~~Y~iLgv~~---------~as~~~Ik~ayr~---l~~~~HPDk~~~-~~~~~~~~~f~~i~~Ay~~L~ 65 (119)
.+|+||-..+ +.+-..|...|+. ..++++||.+.+ ...+.....|..-...|.|+.
T Consensus 625 tpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVit 693 (843)
T KOG0906|consen 625 TPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVIT 693 (843)
T ss_pred eeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeee
Confidence 6788887664 4688899999976 567899998653 345677888988888888854
No 111
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.49 E-value=70 Score=19.77 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=17.7
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
.|-|++.|+..+||+|..++-
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf 45 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELF 45 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 466889999999999988764
No 112
>PF14893 PNMA: PNMA
Probab=24.71 E-value=64 Score=25.16 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=17.1
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRL 33 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l 33 (119)
|+||+.+++.++|..+.+..
T Consensus 23 v~giP~dc~~~ei~e~l~~~ 42 (331)
T PF14893_consen 23 VLGIPEDCEEAEIEEALQAA 42 (331)
T ss_pred eecCCCCCCHHHHHHHHHHh
Confidence 78999999999999887653
No 113
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=24.63 E-value=1.3e+02 Score=25.11 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC
Q 033459 19 VSADGNEIKAAYRRLARTCHPDVVA 43 (119)
Q Consensus 19 ~~as~~~Ik~ayr~l~~~~HPDk~~ 43 (119)
..++.+||..+|.+|++-++-|.+.
T Consensus 186 ~s~~EkEvE~~F~~lsL~f~~D~~T 210 (538)
T PF05781_consen 186 GSASEKEVEAEFLRLSLGFKCDRFT 210 (538)
T ss_pred CCCcHHHHHHHHHHHHHHhhhhhhh
Confidence 4579999999999999999999875
No 114
>smart00362 RRM_2 RNA recognition motif.
Probab=24.55 E-value=85 Score=16.59 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=16.8
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRL 33 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l 33 (119)
|-||+...+.++|++.+.+.
T Consensus 4 i~~l~~~~~~~~l~~~~~~~ 23 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKF 23 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhc
Confidence 56889999999999988754
No 115
>smart00360 RRM RNA recognition motif.
Probab=24.23 E-value=86 Score=16.45 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=16.7
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
|-||+...+.++|+..+....
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC
Confidence 347888899999999987643
No 116
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=23.92 E-value=56 Score=19.84 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=17.4
Q ss_pred CCCccCccccccCCCCCCHHHHH
Q 033459 5 ASSSSSLYDVLGIPVSADGNEIK 27 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~as~~~Ik 27 (119)
.+++.-+|.||.|+..+....+-
T Consensus 10 tsDp~~p~kv~sVPE~apftaVl 32 (76)
T PF03671_consen 10 TSDPKLPYKVISVPEEAPFTAVL 32 (76)
T ss_dssp STSSTS-EEEEEEETTSBHHHHH
T ss_pred ccCCCCcceEEecCCCCchHHHH
Confidence 46778899999999998766543
No 117
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=22.80 E-value=1.8e+02 Score=22.74 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459 28 AAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRA 76 (119)
Q Consensus 28 ~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 76 (119)
+..|+.+.+-.||.+ ..+..++|-+-|..|++.++|.-+|..
T Consensus 75 q~~RRkma~qnP~mH-------NSEISK~LG~~WK~Lse~EKrPFi~EA 116 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMH-------NSEISKRLGAEWKLLSEEEKRPFVDEA 116 (331)
T ss_pred HHHHHHHHHhCcchh-------hHHHHHHHHHHHhhcCHhhhccHHHHH
Confidence 455777777778862 456889999999999999999999964
No 118
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=22.43 E-value=86 Score=19.15 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.7
Q ss_pred CCCccCccccccCCCCCCHHHH
Q 033459 5 ASSSSSLYDVLGIPVSADGNEI 26 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~as~~~I 26 (119)
++.++-+|++|.|+..+....+
T Consensus 10 tSdp~lpfkvlsVpE~aPftAv 31 (82)
T cd01766 10 TSDPKLPFKVLSVPESTPFTAV 31 (82)
T ss_pred cCCCCCcceEEeccccCchHHH
Confidence 4677889999999999876544
No 119
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.35 E-value=86 Score=19.44 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.5
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
.+-|++.++..+||++..++-
T Consensus 24 tF~V~~~atK~~Ik~aie~iy 44 (91)
T PF00276_consen 24 TFEVDPRATKTEIKEAIEKIY 44 (91)
T ss_dssp EEEETTTSTHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhhc
Confidence 567899999999999987764
No 120
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=22.34 E-value=1.8e+02 Score=17.40 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHc
Q 033459 28 AAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTL 64 (119)
Q Consensus 28 ~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L 64 (119)
+-|.++.+.||-+- .+.....-..|.+.|+.+
T Consensus 35 k~Fnkl~~lyHk~~-----Re~fE~e~ee~~elYD~~ 66 (69)
T PF11126_consen 35 KMFNKLLKLYHKQE-----REEFEAENEEVVELYDAV 66 (69)
T ss_pred HHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHH
Confidence 35778888898873 344455556666666654
No 121
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.33 E-value=1.1e+02 Score=23.63 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=36.7
Q ss_pred cCccccccCCC-CCCHHHHHHHHHHHHHHh-------CCCCCCCc-ccHHHHHHHHHHHHHHHHcCC
Q 033459 9 SSLYDVLGIPV-SADGNEIKAAYRRLARTC-------HPDVVATN-QKEMSANEFIKIHAAYSTLSD 66 (119)
Q Consensus 9 ~~~Y~iLgv~~-~as~~~Ik~ayr~l~~~~-------HPDk~~~~-~~~~~~~~f~~i~~Ay~~L~d 66 (119)
.++++-||+.. ..+.+|+.+--+.++.+. ++|....- ......+.+..+.++|+.|.+
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 45677899987 688888877776665543 33321100 011235678888889888873
No 122
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=20.88 E-value=1.8e+02 Score=18.60 Aligned_cols=33 Identities=3% Similarity=0.072 Sum_probs=27.6
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDV 41 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk 41 (119)
.+-...+++.++.+.+++++++.++......+.
T Consensus 27 ~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~ 59 (116)
T TIGR00824 27 QNNVGAVPFVPGENAETLQEKYNAALADLDTEE 59 (116)
T ss_pred cCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCCC
Confidence 445778889999999999999999999886553
No 123
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=20.77 E-value=1.2e+02 Score=16.24 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHc
Q 033459 50 SANEFIKIHAAYSTL 64 (119)
Q Consensus 50 ~~~~f~~i~~Ay~~L 64 (119)
-.+..++|+.|+.||
T Consensus 26 eeEt~qkL~~AF~iL 40 (41)
T PF11590_consen 26 EEETRQKLRRAFDIL 40 (41)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh
Confidence 345677888898887
No 124
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=20.40 E-value=2.5e+02 Score=18.11 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=21.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHhC
Q 033459 13 DVLGIPVSADGNEIKAAYRRLARTCH 38 (119)
Q Consensus 13 ~iLgv~~~as~~~Ik~ayr~l~~~~H 38 (119)
.+|.|++.++.+.+|.+-.+++..+.
T Consensus 25 ~l~~LP~la~S~~~KD~I~q~m~~F~ 50 (120)
T PRK15321 25 RLLALPESASSETLKDSIYQEMNAFK 50 (120)
T ss_pred HHHhCCcccCcHHHHHHHHHHHHHhC
Confidence 46889999999999998888888775
No 125
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=20.29 E-value=1.2e+02 Score=18.26 Aligned_cols=9 Identities=11% Similarity=0.634 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 033459 25 EIKAAYRRL 33 (119)
Q Consensus 25 ~Ik~ayr~l 33 (119)
.|++.|.+.
T Consensus 79 ~L~~~Y~~~ 87 (92)
T PF01388_consen 79 QLRQHYEKY 87 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 126
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=20.02 E-value=1.4e+02 Score=18.85 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=20.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHhCC
Q 033459 12 YDVLGIPVSADGNEIKAAYRRLARTCHP 39 (119)
Q Consensus 12 Y~iLgv~~~as~~~Ik~ayr~l~~~~HP 39 (119)
--|.+||.+.+...|+.+.++|+-.|--
T Consensus 5 L~V~NLP~~~d~~~I~~RL~qLsdNCGG 32 (90)
T PF11608_consen 5 LYVSNLPTNKDPSSIKNRLRQLSDNCGG 32 (90)
T ss_dssp EEEES--TTS-HHHHHHHHHHHHHTTT-
T ss_pred EEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 3477889999999999999999887643
Done!