Query 033459
Match_columns 119
No_of_seqs 219 out of 1250
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 03:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wjz_A 1700030A21RIK protein; 99.9 2.9E-25 9.8E-30 140.7 5.7 79 1-79 8-90 (94)
2 2ctr_A DNAJ homolog subfamily 99.9 7.8E-24 2.7E-28 132.8 9.2 74 4-80 2-75 (88)
3 2yua_A Williams-beuren syndrom 99.9 2.9E-24 9.8E-29 137.5 6.9 74 4-79 12-85 (99)
4 2ej7_A HCG3 gene; HCG3 protein 99.9 5.5E-24 1.9E-28 131.7 7.7 74 3-77 3-76 (82)
5 2dn9_A DNAJ homolog subfamily 99.9 3.9E-24 1.3E-28 131.5 6.6 72 4-77 2-73 (79)
6 2dmx_A DNAJ homolog subfamily 99.9 8.1E-24 2.8E-28 133.6 8.0 74 4-78 4-77 (92)
7 2ctp_A DNAJ homolog subfamily 99.9 6.2E-24 2.1E-28 130.4 6.4 72 4-78 2-73 (78)
8 2ctq_A DNAJ homolog subfamily 99.9 1.8E-23 6.3E-28 136.5 7.7 74 4-79 15-88 (112)
9 2o37_A Protein SIS1; HSP40, J- 99.9 3.3E-23 1.1E-27 130.9 8.6 72 6-82 5-76 (92)
10 2lgw_A DNAJ homolog subfamily 99.9 2.8E-23 9.7E-28 133.0 7.6 69 9-78 2-70 (99)
11 2cug_A Mkiaa0962 protein; DNAJ 99.9 2.9E-23 9.8E-28 130.2 7.3 71 5-78 13-83 (88)
12 2och_A Hypothetical protein DN 99.9 3.5E-23 1.2E-27 125.6 7.0 67 6-77 5-71 (73)
13 1hdj_A Human HSP40, HDJ-1; mol 99.9 3.9E-23 1.3E-27 126.5 7.3 68 8-78 2-69 (77)
14 2l6l_A DNAJ homolog subfamily 99.9 5E-23 1.7E-27 141.1 8.4 82 1-82 2-87 (155)
15 2ctw_A DNAJ homolog subfamily 99.9 1.1E-22 3.7E-27 132.3 8.2 72 5-78 13-84 (109)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 9E-23 3.1E-27 132.5 6.7 74 5-78 11-86 (109)
17 1bq0_A DNAJ, HSP40; chaperone, 99.9 7.5E-23 2.6E-27 131.7 3.0 69 8-78 2-70 (103)
18 3hho_A CO-chaperone protein HS 99.8 1.2E-21 4.1E-26 136.7 6.8 74 7-80 2-80 (174)
19 3bvo_A CO-chaperone protein HS 99.8 1E-20 3.5E-25 135.3 7.3 75 5-79 39-118 (207)
20 1fpo_A HSC20, chaperone protei 99.8 6.7E-21 2.3E-25 132.7 6.0 70 10-79 2-76 (171)
21 3apq_A DNAJ homolog subfamily 99.8 1.2E-20 4.3E-25 133.4 7.3 68 9-78 2-69 (210)
22 2ys8_A RAB-related GTP-binding 99.8 6.6E-21 2.3E-25 119.9 3.7 62 7-71 25-86 (90)
23 1iur_A KIAA0730 protein; DNAJ 99.8 2.3E-20 7.9E-25 117.1 2.6 64 6-70 13-76 (88)
24 1gh6_A Large T antigen; tumor 99.8 2.5E-21 8.5E-26 126.8 -2.5 62 8-75 7-70 (114)
25 3uo3_A J-type CO-chaperone JAC 99.8 9.2E-20 3.1E-24 127.9 4.2 69 4-77 6-81 (181)
26 1n4c_A Auxilin; four helix bun 99.8 5.8E-20 2E-24 128.7 2.6 65 9-73 117-182 (182)
27 3lz8_A Putative chaperone DNAJ 99.8 2E-20 6.8E-25 141.8 0.0 71 5-78 24-94 (329)
28 1faf_A Large T antigen; J doma 99.8 1.3E-19 4.4E-24 111.5 3.4 60 8-73 10-71 (79)
29 2pf4_E Small T antigen; PP2A, 99.8 3.5E-20 1.2E-24 129.1 -1.0 66 7-78 9-76 (174)
30 2qwo_B Putative tyrosine-prote 99.8 4E-19 1.4E-23 112.1 3.4 58 9-66 33-91 (92)
31 3ag7_A Putative uncharacterize 99.7 9.5E-19 3.3E-23 113.2 2.9 61 7-68 39-104 (106)
32 2guz_A Mitochondrial import in 99.7 6.9E-19 2.4E-23 106.2 1.1 59 6-70 11-70 (71)
33 3apo_A DNAJ homolog subfamily 99.7 3.1E-18 1.1E-22 140.5 -0.1 71 6-78 18-88 (780)
34 2y4t_A DNAJ homolog subfamily 99.3 1.3E-12 4.5E-17 98.2 4.9 68 8-75 381-449 (450)
35 2guz_B Mitochondrial import in 99.2 9.3E-12 3.2E-16 73.5 3.0 51 10-66 5-58 (65)
36 2pzi_A Probable serine/threoni 94.8 0.021 7E-07 46.1 3.7 48 6-63 626-675 (681)
37 2cqn_A Formin-binding protein 77.1 8.8 0.0003 22.5 6.2 59 21-80 6-65 (77)
38 2pk2_A Cyclin-T1, protein TAT; 71.4 2.4 8.1E-05 31.9 2.5 30 9-40 219-248 (358)
39 1qqr_A Streptokinase domain B; 57.9 7.1 0.00024 25.5 2.5 32 10-41 33-64 (138)
40 1ug2_A 2610100B20RIK gene prod 51.7 8.6 0.0003 23.5 2.0 22 20-41 67-88 (95)
41 1xou_B Z5138 gene product; coi 44.0 48 0.0016 19.5 5.3 31 48-81 49-79 (95)
42 2krx_A ASL3597 protein; struct 40.0 30 0.001 21.1 3.2 43 1-43 1-46 (94)
43 3nm9_A HMG-D, high mobility gr 39.2 45 0.0015 18.5 3.8 39 27-75 15-53 (73)
44 2ket_A Cathelicidin-6; antimic 36.7 33 0.0011 15.5 2.5 18 24-41 4-21 (27)
45 2lr8_A CAsp8-associated protei 42.2 7.6 0.00026 22.4 0.0 22 20-41 47-68 (70)
46 2lxi_A RNA-binding protein 10; 35.4 31 0.0011 19.8 2.8 21 14-34 6-26 (91)
47 4a3n_A Transcription factor SO 35.2 56 0.0019 17.7 4.2 41 27-75 14-54 (71)
48 3bbz_A P protein, phosphoprote 35.2 53 0.0018 17.5 3.6 27 53-79 4-30 (49)
49 1i11_A Transcription factor SO 31.9 71 0.0024 17.9 3.9 42 27-75 16-57 (81)
50 3f27_D Transcription factor SO 31.8 72 0.0025 18.0 4.2 41 27-74 18-58 (83)
51 1vq8_S 50S ribosomal protein L 30.9 32 0.0011 20.4 2.2 21 14-34 26-46 (85)
52 2cs1_A PMS1 protein homolog 1; 30.1 71 0.0024 18.6 3.8 38 27-71 19-56 (92)
53 2crj_A SWI/SNF-related matrix- 29.7 86 0.0029 18.2 4.7 41 27-74 19-59 (92)
54 3r8s_T 50S ribosomal protein L 29.1 36 0.0012 20.6 2.2 20 14-33 31-50 (93)
55 1wgf_A Upstream binding factor 28.7 76 0.0026 18.4 3.7 41 27-75 32-72 (90)
56 2zjr_Q 50S ribosomal protein L 28.4 37 0.0013 20.6 2.2 21 14-34 26-46 (95)
57 3j21_T 50S ribosomal protein L 27.5 40 0.0014 20.1 2.2 21 14-34 27-47 (86)
58 1j46_A SRY, sex-determining re 27.4 91 0.0031 17.7 4.0 40 27-74 16-55 (85)
59 1iqt_A AUF1, heterogeneous nuc 26.8 57 0.002 17.4 2.8 20 14-33 4-23 (75)
60 3tve_T 50S ribosomal protein L 26.6 42 0.0014 20.2 2.2 21 14-34 25-45 (92)
61 4aj5_K Spindle and kinetochore 25.5 1.4E+02 0.0046 19.1 4.8 45 22-66 20-64 (123)
62 2xpn_B SPT6, chromatin structu 25.2 17 0.00057 16.6 0.1 10 10-19 4-13 (26)
63 2e6o_A HMG box-containing prot 24.4 1E+02 0.0035 17.6 3.7 41 27-74 29-69 (87)
64 2d7l_A WD repeat and HMG-box D 24.4 68 0.0023 18.5 2.8 42 27-75 17-58 (81)
65 1xs0_A Inhibitor of vertebrate 24.1 44 0.0015 21.7 2.1 32 12-43 94-127 (136)
66 3hm5_A DNA methyltransferase 1 24.0 60 0.002 19.6 2.6 20 20-39 66-85 (93)
67 3u2b_C Transcription factor SO 23.6 1E+02 0.0035 17.0 3.9 41 27-74 14-54 (79)
68 1gt0_D Transcription factor SO 23.4 83 0.0029 17.6 3.1 41 27-74 14-54 (80)
69 1cf7_A Protein (transcription 22.4 54 0.0018 18.9 2.1 44 20-76 9-52 (76)
70 2b7e_A PRE-mRNA processing pro 22.1 1.1E+02 0.0038 16.8 5.7 50 24-78 3-57 (59)
71 1hme_A High mobility group pro 22.1 1.1E+02 0.0038 16.8 4.5 41 27-74 18-58 (77)
72 1r5q_A KAI A, circadian oscill 21.8 1.5E+02 0.005 18.1 4.9 18 24-41 12-29 (102)
73 1v2z_A Circadian clock protein 21.2 1.6E+02 0.0054 18.3 4.9 19 23-41 18-36 (111)
74 1k99_A Upstream binding factor 21.1 1.4E+02 0.0047 17.6 4.1 41 27-74 22-62 (99)
75 2co9_A Thymus high mobility gr 21.1 1.1E+02 0.0036 18.2 3.4 38 27-71 29-66 (102)
76 4iej_A DNA methyltransferase 1 21.1 75 0.0026 19.2 2.6 18 20-37 66-83 (93)
77 2hzc_A Splicing factor U2AF 65 21.0 84 0.0029 17.2 2.8 21 14-34 11-31 (87)
78 4euw_A Transcription factor SO 20.9 1.2E+02 0.004 18.2 3.6 41 27-74 41-81 (106)
79 2bye_A Phospholipase C, epsilo 20.8 57 0.002 20.4 2.1 24 6-29 17-40 (110)
80 1hry_A Human SRY; DNA, DNA-bin 20.6 77 0.0026 17.5 2.5 40 27-74 16-55 (76)
81 1wz6_A HMG-box transcription f 20.4 89 0.0031 17.6 2.8 41 27-75 19-59 (82)
82 2mss_A Protein (musashi1); RNA 20.3 64 0.0022 17.2 2.1 20 14-33 4-23 (75)
No 1
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.91 E-value=2.9e-25 Score=140.66 Aligned_cols=79 Identities=27% Similarity=0.429 Sum_probs=69.6
Q ss_pred CCCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----ccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459 1 MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATN----QKEMSANEFIKIHAAYSTLSDPHKRANYDRA 76 (119)
Q Consensus 1 m~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~----~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 76 (119)
|+.......|||+||||+++++.++||++|++|++++|||+++.. ..+.+.+.|+.|++||+||+||.+|..||..
T Consensus 8 ~~~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 87 (94)
T 1wjz_A 8 MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ 87 (94)
T ss_dssp SCCSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred cccccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 445556778999999999999999999999999999999997632 2367889999999999999999999999997
Q ss_pred hHh
Q 033459 77 LFV 79 (119)
Q Consensus 77 l~~ 79 (119)
+..
T Consensus 88 l~~ 90 (94)
T 1wjz_A 88 RSG 90 (94)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
No 2
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=7.8e-24 Score=132.80 Aligned_cols=74 Identities=39% Similarity=0.602 Sum_probs=67.0
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459 4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV 80 (119)
Q Consensus 4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 80 (119)
++....|||+||||+++++.++||++|++|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+...
T Consensus 2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 2 SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK---SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp CSCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC---SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC---ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 4567789999999999999999999999999999999976 3568899999999999999999999999976543
No 3
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=137.52 Aligned_cols=74 Identities=38% Similarity=0.604 Sum_probs=66.6
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459 4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV 79 (119)
Q Consensus 4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 79 (119)
......|||+||||+++++.++||++|++|++++|||+++.. +.+.+.|+.|++||+||+||.+|..||..|..
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--AEAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC--SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 346678999999999999999999999999999999997643 45788999999999999999999999997654
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=5.5e-24 Score=131.71 Aligned_cols=74 Identities=41% Similarity=0.602 Sum_probs=66.5
Q ss_pred CCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 3 AAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 3 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
.+.+...|||+||||+++++.++||++|+++++++|||+++.. .+.+.+.|+.|++||++|+||.+|..||..+
T Consensus 3 ~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 3 SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SCCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT-HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 3556778999999999999999999999999999999998643 3567889999999999999999999999854
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=3.9e-24 Score=131.54 Aligned_cols=72 Identities=38% Similarity=0.609 Sum_probs=65.5
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
+.....|||+||||+++++.++||++|++|++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..+
T Consensus 2 s~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 2 SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD--PKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp CSSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC--TTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 567788999999999999999999999999999999998643 347889999999999999999999999854
No 6
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=8.1e-24 Score=133.63 Aligned_cols=74 Identities=43% Similarity=0.638 Sum_probs=66.5
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..+...|||+||||+++++.++||++|++|++++|||+++.. .+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN-KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC-SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 456678999999999999999999999999999999998643 35688999999999999999999999998653
No 7
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=6.2e-24 Score=130.38 Aligned_cols=72 Identities=38% Similarity=0.603 Sum_probs=65.6
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
++....|||+||||+++++.++||++|+++++++|||++.. +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA---PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS---HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 56778899999999999999999999999999999999653 5678999999999999999999999998553
No 8
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=136.50 Aligned_cols=74 Identities=26% Similarity=0.393 Sum_probs=66.6
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459 4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV 79 (119)
Q Consensus 4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 79 (119)
......|||+||||+++++.++||++||+|++++|||+++.+ +.+.+.|+.|++||+||+||.+|..||..+..
T Consensus 15 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 15 RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN--PKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC--STHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 345678999999999999999999999999999999998744 34788999999999999999999999998764
No 9
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.3e-23 Score=130.94 Aligned_cols=72 Identities=35% Similarity=0.607 Sum_probs=64.2
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhhc
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRK 82 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~~ 82 (119)
....|||+||||+++++.++||++|++|++++|||+++.. .+.|++|++||++|+||.+|..||..+.....
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 76 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILNDPQKREIYDQYGLEAAR 76 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-----HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence 4567999999999999999999999999999999997643 35899999999999999999999998765444
No 10
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=133.00 Aligned_cols=69 Identities=45% Similarity=0.683 Sum_probs=63.6
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.|||+||||+++++.++||++|+++++++|||+++.. .+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC-CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999999998643 45688999999999999999999999999765
No 11
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=2.9e-23 Score=130.22 Aligned_cols=71 Identities=38% Similarity=0.568 Sum_probs=64.2
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 5 ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.....|||+||||+++++.++||++|+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD---PGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS---TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 3457799999999999999999999999999999999764 3477899999999999999999999998653
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.89 E-value=3.5e-23 Score=125.57 Aligned_cols=67 Identities=42% Similarity=0.654 Sum_probs=60.6
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 77 (119)
....|||+||||+++++.++||++|+++++++|||+++.. .+.|+.|++||++|+||.+|..||..+
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-----AEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-----HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-----HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 4567999999999999999999999999999999997642 468999999999999999999999854
No 13
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.89 E-value=3.9e-23 Score=126.51 Aligned_cols=68 Identities=40% Similarity=0.563 Sum_probs=62.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++++.++||++|+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 4699999999999999999999999999999999763 3477899999999999999999999999654
No 14
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.88 E-value=5e-23 Score=141.13 Aligned_cols=82 Identities=27% Similarity=0.411 Sum_probs=72.7
Q ss_pred CCCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----cHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459 1 MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ----KEMSANEFIKIHAAYSTLSDPHKRANYDRA 76 (119)
Q Consensus 1 m~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~----~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 76 (119)
|+...+..+|||+||||+++++.++||++||+|++++|||+++... .+.+.+.|..|++||+||+||.+|+.||..
T Consensus 2 m~~~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~ 81 (155)
T 2l6l_A 2 MAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQ 81 (155)
T ss_dssp CCCCCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHH
T ss_pred CCcccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6777788899999999999999999999999999999999987542 345678999999999999999999999998
Q ss_pred hHhhhc
Q 033459 77 LFVVRK 82 (119)
Q Consensus 77 l~~~~~ 82 (119)
+.....
T Consensus 82 ~~~~~~ 87 (155)
T 2l6l_A 82 RCEDDL 87 (155)
T ss_dssp HHHHHH
T ss_pred cchhhc
Confidence 876544
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=1.1e-22 Score=132.31 Aligned_cols=72 Identities=39% Similarity=0.580 Sum_probs=65.4
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 5 ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.....+||+||||+++++.++||++|++|++++|||+++.. +.+.+.|+.|++||+||+||.+|..||..+.
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC--HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 45678999999999999999999999999999999998643 5678999999999999999999999998654
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.87 E-value=9e-23 Score=132.52 Aligned_cols=74 Identities=36% Similarity=0.531 Sum_probs=67.0
Q ss_pred CCCccCccccccCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-cccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 5 ASSSSSLYDVLGIPVSA-DGNEIKAAYRRLARTCHPDVVAT-NQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~a-s~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.....|||+||||++++ +.++||++||++++++|||++++ ...+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 35678999999999999 99999999999999999999874 3456788999999999999999999999999775
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.86 E-value=7.5e-23 Score=131.72 Aligned_cols=69 Identities=36% Similarity=0.634 Sum_probs=62.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
..|||+||||+++++.++||++||+|++++|||+++.. +.+.++|+.|++||++|+||.+|..||..+.
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT--CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 47999999999999999999999999999999998643 3477899999999999999999999998664
No 18
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.85 E-value=1.2e-21 Score=136.74 Aligned_cols=74 Identities=30% Similarity=0.584 Sum_probs=64.3
Q ss_pred CccCccccccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCccc---HHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459 7 SSSSLYDVLGIPVSAD--GNEIKAAYRRLARTCHPDVVATNQK---EMSANEFIKIHAAYSTLSDPHKRANYDRALFVV 80 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 80 (119)
.++|||+||||+++++ .++||++||++++++|||++++... ..+.+.|..|++||+||+||.+|..||..+.+.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~ 80 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGI 80 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccCC
Confidence 4679999999999887 9999999999999999999875432 237789999999999999999999999988643
No 19
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=135.28 Aligned_cols=75 Identities=24% Similarity=0.404 Sum_probs=65.2
Q ss_pred CCCccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459 5 ASSSSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALFV 79 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 79 (119)
.....|||+||||+++ ++.++||++||+|++++|||++++.. ...+.+.|+.|++||+||+||.+|..||..+.+
T Consensus 39 ~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G 118 (207)
T 3bvo_A 39 PDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG 118 (207)
T ss_dssp CCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 3446799999999986 79999999999999999999987542 335678899999999999999999999987764
No 20
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.82 E-value=6.7e-21 Score=132.65 Aligned_cols=70 Identities=26% Similarity=0.463 Sum_probs=63.2
Q ss_pred CccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459 10 SLYDVLGIPVSA--DGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALFV 79 (119)
Q Consensus 10 ~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 79 (119)
|||+||||++++ +..+||++||+|++++|||+++... ...+.+.|..|++||+||+||.+|..||..+.+
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g 76 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence 899999999998 9999999999999999999987543 235678999999999999999999999998763
No 21
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.82 E-value=1.2e-20 Score=133.38 Aligned_cols=68 Identities=34% Similarity=0.592 Sum_probs=62.5
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.|||+||||+++++.++||+|||+|++++|||+++.. +.+.++|+.|++||++|+||.+|..||..+.
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~--~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~ 69 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 69 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC--TTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 5899999999999999999999999999999998644 3478899999999999999999999999654
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6.6e-21 Score=119.95 Aligned_cols=62 Identities=31% Similarity=0.445 Sum_probs=56.0
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHH
Q 033459 7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 71 (119)
...|||+||||+++++.++||++||+|++++|||+++. +.+.+.|+.|++||++|+|+.+|.
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA---PGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC---TTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCccccc
Confidence 35799999999999999999999999999999999763 447788999999999999998775
No 23
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.79 E-value=2.3e-20 Score=117.08 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=56.7
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHH
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R 70 (119)
....++|+||||+++++.++||++||+|++++|||+++... +.+.+.|+.|++||++|+|...|
T Consensus 13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~-~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH-DIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch-HHHHHHHHHHHHHHHHHHhhccc
Confidence 45568999999999999999999999999999999987543 56889999999999999987555
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.78 E-value=2.5e-21 Score=126.81 Aligned_cols=62 Identities=29% Similarity=0.408 Sum_probs=57.2
Q ss_pred ccCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 8 SSSLYDVLGIPVSADG--NEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
..++|+||||+++++. ++||++||+|++++|||+++. .++|++|++||+||+||.+|..||.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~------~e~f~~I~~AYevL~d~~~R~~~~~ 70 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPD 70 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc------HHHHHHHHHHHHHHCCHHHHHHhhh
Confidence 4689999999999998 999999999999999999654 3589999999999999999999985
No 25
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.78 E-value=9.2e-20 Score=127.92 Aligned_cols=69 Identities=28% Similarity=0.592 Sum_probs=61.3
Q ss_pred CCCCccCccccc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459 4 AASSSSSLYDVL------GIPV-SADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRA 76 (119)
Q Consensus 4 ~~~~~~~~Y~iL------gv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 76 (119)
+.....|||+|| |+++ +++..+||++||+|++++|||++++ +.+.|..|++||+||+||.+|..||..
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-----CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-----HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 445678999999 4665 8999999999999999999999764 556899999999999999999999998
Q ss_pred h
Q 033459 77 L 77 (119)
Q Consensus 77 l 77 (119)
+
T Consensus 81 l 81 (181)
T 3uo3_A 81 L 81 (181)
T ss_dssp H
T ss_pred H
Confidence 8
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.77 E-value=5.8e-20 Score=128.75 Aligned_cols=65 Identities=17% Similarity=0.384 Sum_probs=58.8
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccc-HHHHHHHHHHHHHHHHcCCchHHHHH
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQK-EMSANEFIKIHAAYSTLSDPHKRANY 73 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Y 73 (119)
.|+|+||||+++++.++||++||++++++|||+++.... ..+.+.|+.|++||+||+|+.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 699999999999999999999999999999999875432 24788999999999999999999876
No 27
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.77 E-value=2e-20 Score=141.80 Aligned_cols=71 Identities=37% Similarity=0.593 Sum_probs=0.0
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 5 ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 5 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
.+...|||+||||+++|+.++||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|..||+.+.
T Consensus 24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE---NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC---hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 3456899999999999999999999999999999999653 3578899999999999999999999998643
No 28
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.77 E-value=1.3e-19 Score=111.52 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=53.8
Q ss_pred ccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHH
Q 033459 8 SSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANY 73 (119)
Q Consensus 8 ~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 73 (119)
..++|+||||+++ ++.++||++||+|++++|||++. ..+.|++|++||++|+|+.+|..+
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~------~~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG------SHALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC------CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC------CHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3589999999999 99999999999999999999954 246899999999999999888763
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.75 E-value=3.5e-20 Score=129.11 Aligned_cols=66 Identities=26% Similarity=0.268 Sum_probs=57.3
Q ss_pred CccCccccccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 7 SSSSLYDVLGIPVSAD--GNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
...|+|+||||+++++ .++||+|||++++++|||++++ .++|++|++||++|+||.+|+.||+...
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~------~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3469999999999998 6999999999999999999654 3579999999999999999999999664
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.75 E-value=4e-19 Score=112.13 Aligned_cols=58 Identities=16% Similarity=0.340 Sum_probs=51.9
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccc-HHHHHHHHHHHHHHHHcCC
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQK-EMSANEFIKIHAAYSTLSD 66 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~f~~i~~Ay~~L~d 66 (119)
.++|++|||++.++.++||+|||++++++|||++++... ..+.+.|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999875432 3578899999999999974
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.73 E-value=9.5e-19 Score=113.16 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=52.5
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----ccHHHHHHHHHHHHHHHHcCCch
Q 033459 7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATN-----QKEMSANEFIKIHAAYSTLSDPH 68 (119)
Q Consensus 7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~~f~~i~~Ay~~L~d~~ 68 (119)
...|||+|||++. |+.++||+|||++++++||||++.. ....+.++|+.|++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 3469999999996 9999999999999999999997521 12356889999999999999985
No 32
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.9e-19 Score=106.17 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=51.3
Q ss_pred CCccCccccccCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHH
Q 033459 6 SSSSSLYDVLGIPV-SADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R 70 (119)
+...++|+||||++ +++.++||++||+|++++|||+.. ..+.|++|++||++|+++..|
T Consensus 11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g------~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG------SPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC------CHHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC------CHHHHHHHHHHHHHHhhhhhc
Confidence 44568999999999 799999999999999999999942 245899999999999987654
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.67 E-value=3.1e-18 Score=140.46 Aligned_cols=71 Identities=32% Similarity=0.567 Sum_probs=40.5
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF 78 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 78 (119)
....|||+||||+++|+.++||+|||+|++++|||+++.. +.+.++|++|++||++|+||.+|..||+.+.
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~--~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-------------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 4567999999999999999999999999999999997543 4578899999999999999999999998654
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.31 E-value=1.3e-12 Score=98.19 Aligned_cols=68 Identities=38% Similarity=0.623 Sum_probs=56.7
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-cHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ-KEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
..++|++||+.+.++.++|+++|+++++++|||+.+... +..+.+.|..|.+||++|+|+.+|..||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 358999999999999999999999999999999976432 35688899999999999999999999997
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.19 E-value=9.3e-12 Score=73.55 Aligned_cols=51 Identities=18% Similarity=0.058 Sum_probs=44.7
Q ss_pred CccccccCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCC
Q 033459 10 SLYDVLGIPVS---ADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSD 66 (119)
Q Consensus 10 ~~Y~iLgv~~~---as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d 66 (119)
.-|.||||+++ ++.++|+++||+|+..+|||+ .+.......|++|.++|..
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDk------GGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEK------GGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGG------TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCC------CCCHHHHHHHHHHHHHHHH
Confidence 45789999999 999999999999999999998 3455678889999999863
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.83 E-value=0.021 Score=46.12 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=37.3
Q ss_pred CCccCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHH
Q 033459 6 SSSSSLYDVLGIPVSADG--NEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYST 63 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~ 63 (119)
+..+++|.|||++.+... .+|+++||++++..+++ .+++..|..|..|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHhccc
Confidence 345679999999776655 67999999999965544 3578888888876
No 37
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=77.08 E-value=8.8 Score=22.46 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCC-chHHHHHHHHhHhh
Q 033459 21 ADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSD-PHKRANYDRALFVV 80 (119)
Q Consensus 21 as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~l~~~ 80 (119)
.-...++..|+.+.+...|.......=+.+...|.... +|..|.+ ..++..|+..+...
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~~L 65 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFMHVL 65 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHHHH
Confidence 34677899999999988887765544455556666555 7999976 46778888877643
No 38
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=71.37 E-value=2.4 Score=31.91 Aligned_cols=30 Identities=0% Similarity=0.030 Sum_probs=22.7
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCC
Q 033459 9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPD 40 (119)
Q Consensus 9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPD 40 (119)
..++++|.. +.+.++|+..++.++..+.-.
T Consensus 219 ~~W~~~~~~--~vt~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 219 KHWWEYVDA--TVTLELLDELTHEFLQILEKT 248 (358)
T ss_dssp CCTTTTSCS--SCCHHHHHHHHHHHHHHTTTC
T ss_pred cchHHHHhc--cCCHHHHHHHHHHHHHHHHhC
Confidence 457777743 568999999999998877433
No 39
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=57.93 E-value=7.1 Score=25.54 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=27.9
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033459 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDV 41 (119)
Q Consensus 10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk 41 (119)
-++..|.|....+.++++++=..+..++||+=
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 34677888888999999999999999999994
No 40
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=51.68 E-value=8.6 Score=23.51 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 033459 20 SADGNEIKAAYRRLARTCHPDV 41 (119)
Q Consensus 20 ~as~~~Ik~ayr~l~~~~HPDk 41 (119)
+-++.+|+.+|+.|++.+|-..
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999887654
No 41
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=44.03 E-value=48 Score=19.48 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhh
Q 033459 48 EMSANEFIKIHAAYSTLSDPHKRANYDRALFVVR 81 (119)
Q Consensus 48 ~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~ 81 (119)
+.+.+....+.+.|. ....|..||..|....
T Consensus 49 pqaae~ln~liegyt---~geerklydsalskie 79 (95)
T 1xou_B 49 PQAAEKLNKLIEGYT---YGEERKLYDSALSKIE 79 (95)
T ss_dssp HHHHHHHHHHHHHHH---HSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc---chhHHHHHHHHHHHHH
Confidence 567777777777776 5689999999886543
No 42
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=40.04 E-value=30 Score=21.09 Aligned_cols=43 Identities=9% Similarity=-0.030 Sum_probs=35.0
Q ss_pred CCCCCCCccCccccccCCCC---CCHHHHHHHHHHHHHHhCCCCCC
Q 033459 1 MAAAASSSSSLYDVLGIPVS---ADGNEIKAAYRRLARTCHPDVVA 43 (119)
Q Consensus 1 m~~~~~~~~~~Y~iLgv~~~---as~~~Ik~ayr~l~~~~HPDk~~ 43 (119)
|+.|.+-..|+|=||.=... .|.+|+....+.+......|-.|
T Consensus 1 M~d~lmyq~D~yVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~LP 46 (94)
T 2krx_A 1 MPDPLMYQQDNFVVLETNQPEQFLTTIELLEKLKGELEKISFSDLP 46 (94)
T ss_dssp CCCCCSCCCCCEEEEESSSCSEEECHHHHHHHHHHHHHHSCTTTSC
T ss_pred CCchhhcccCCEEEecCCCCcccCCHHHHHHHHHHHHHhCccccCC
Confidence 88999999999999976543 69999999988887777657544
No 43
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=39.23 E-value=45 Score=18.46 Aligned_cols=39 Identities=8% Similarity=0.184 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
.+.+|..++.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-------VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC-------HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4456677778899852 35677889999999987 555654
No 44
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=36.71 E-value=33 Score=15.52 Aligned_cols=18 Identities=11% Similarity=0.467 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 033459 24 NEIKAAYRRLARTCHPDV 41 (119)
Q Consensus 24 ~~Ik~ayr~l~~~~HPDk 41 (119)
+..++.|+++.++..|-.
T Consensus 4 krfrkkfkklfkklspvi 21 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPVI 21 (27)
T ss_dssp HHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 456888889988888863
No 45
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=42.20 E-value=7.6 Score=22.45 Aligned_cols=22 Identities=9% Similarity=0.295 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 033459 20 SADGNEIKAAYRRLARTCHPDV 41 (119)
Q Consensus 20 ~as~~~Ik~ayr~l~~~~HPDk 41 (119)
+-++++|+.+|+.|++.+|-.|
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 5577888888888888887654
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=35.44 E-value=31 Score=19.82 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=17.9
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
|=||+.+++.++|+..|.+.-
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 348999999999999998764
No 47
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=35.25 E-value=56 Score=17.72 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
.+.++..++.-||+.. ..+....|.+.|..|++..+. .|..
T Consensus 14 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~~eK~-~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-------NAELSKMLGKSWKALTLAEKR-PFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC-------HHHHHHHHHHHHHHSCHHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHhcCCHHHHH-HHHH
Confidence 4556777888899852 356778899999999865544 4443
No 48
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=35.23 E-value=53 Score=17.52 Aligned_cols=27 Identities=7% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459 53 EFIKIHAAYSTLSDPHKRANYDRALFV 79 (119)
Q Consensus 53 ~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 79 (119)
+....+-|-+.++||..|..|+..+..
T Consensus 4 Kltl~~l~kdCi~np~~r~~Fe~ki~~ 30 (49)
T 3bbz_A 4 KVMITKMITDSVANPQMKQAFEQRLAK 30 (49)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566788899999999999987753
No 49
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=31.90 E-value=71 Score=17.95 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
.+.++..++.-||+.. ..+....|.+.|..|++..+..-++.
T Consensus 16 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-------NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC-------HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 3455667777788852 35567889999999997776555554
No 50
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=31.76 E-value=72 Score=17.95 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
.+.+|..++.-||+.. ..+....|.+.|..|++..+..-.+
T Consensus 18 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-------NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC-------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566777888899952 3567788999999998655444333
No 51
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=30.91 E-value=32 Score=20.43 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=18.0
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
+|-|++.|+.-+||+|..++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577899999999999988764
No 52
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.10 E-value=71 Score=18.56 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 71 (119)
.+..|..++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 19 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~eeK~~ 56 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS-------LEDATLQIEELWKTLSEEEKLK 56 (92)
T ss_dssp HHHHHHHHHHHCCSSC-------HHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHhcCCHHHHHH
Confidence 3455667778899852 3567788999999998665443
No 53
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=29.66 E-value=86 Score=18.18 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
.+..|..++.-||+.. ..+..+.|.+.|..|++..+..-.+
T Consensus 19 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 19 LNERREQIRTRHPDLP-------FPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp HHHHHHHHHHHCTTCC-------HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456677778899852 4567788999999999776544333
No 54
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=29.07 E-value=36 Score=20.59 Aligned_cols=20 Identities=45% Similarity=0.537 Sum_probs=15.9
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRL 33 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l 33 (119)
+|-|++.|+.-+||+|..++
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46678888999999887765
No 55
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=28.67 E-value=76 Score=18.37 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
.+.+|..++.-||+.. ..+....|.+.|..|++..+ ..|..
T Consensus 32 ~~~~r~~~k~~~P~~~-------~~eisk~lg~~Wk~ls~eeK-~~Y~~ 72 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS-------ESELTRLLARMWNDLSEKKK-AKYKA 72 (90)
T ss_dssp HHHTHHHHHHHCTTSC-------HHHHHHHHHHHHHHSCHHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHhCCHHHH-HHHHH
Confidence 4455667777899852 45667889999999996554 45544
No 56
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=28.37 E-value=37 Score=20.61 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=17.7
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
+|-|++.|+.-+||+|..++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 678899999999999987764
No 57
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.46 E-value=40 Score=20.06 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=17.1
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
+|-|.+.|+..+||+|-.++.
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf 47 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIF 47 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHHHHHc
Confidence 467888999999999987764
No 58
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=27.40 E-value=91 Score=17.73 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
.+.++..++.-||+.. ..+....|.+.|..|++..+ ..|.
T Consensus 16 ~~~~r~~~~~~~P~~~-------~~eisk~lg~~Wk~ls~eeK-~~y~ 55 (85)
T 1j46_A 16 SRDQRRKMALENPRMR-------NSEISKQLGYQWKMLTEAEK-WPFF 55 (85)
T ss_dssp HHHHHHHHHHHSTTSC-------HHHHHHHHHHHHTTSCHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHHCCHHHH-HHHH
Confidence 3456666777889852 34567889999999985554 4443
No 59
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=26.76 E-value=57 Score=17.41 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=16.9
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRL 33 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l 33 (119)
|=+|+.+++.++|+..|.+.
T Consensus 4 v~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 4 VGGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp ESCCCSSCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 44789999999999999875
No 60
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=26.61 E-value=42 Score=20.21 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=17.5
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
+|-|++.|+.-+||+|-.++-
T Consensus 25 ~F~V~~~AnK~qIK~aVe~lf 45 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETAF 45 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 477889999999999987763
No 61
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=25.46 E-value=1.4e+02 Score=19.07 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCC
Q 033459 22 DGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSD 66 (119)
Q Consensus 22 s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d 66 (119)
+-+.|..+...=.+..|||.......-...+....|..-|.+|..
T Consensus 20 DLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~ 64 (123)
T 4aj5_K 20 DLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYA 64 (123)
T ss_dssp HHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHHH
Confidence 345566666666778899974333334456677777777777764
No 62
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=25.16 E-value=17 Score=16.61 Aligned_cols=10 Identities=10% Similarity=0.534 Sum_probs=7.2
Q ss_pred CccccccCCC
Q 033459 10 SLYDVLGIPV 19 (119)
Q Consensus 10 ~~Y~iLgv~~ 19 (119)
=+|+|+|+..
T Consensus 4 lFyEIFGtG~ 13 (26)
T 2xpn_B 4 MFFEIFGTGE 13 (26)
T ss_pred EEEEEecCCc
Confidence 3788888753
No 63
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=24.39 E-value=1e+02 Score=17.61 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
.+.+|..++.-||+.. ..+..+.|.+.|..|++..+..-.+
T Consensus 29 ~~~~r~~~~~~~P~~~-------~~eisk~lg~~Wk~ls~eeK~~y~~ 69 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD-------NRAISVILGDRWKKMKNEERRMYTL 69 (87)
T ss_dssp HHHTHHHHHHHCTTSC-------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4556667777889852 3456788999999998655444333
No 64
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.39 E-value=68 Score=18.47 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
-..+|..++.-||+.. ...+..+.|.+.|..|++..+. .|..
T Consensus 17 ~~e~R~~ik~~~P~~~------~~~eisK~lge~Wk~ls~eeK~-~y~~ 58 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS------DEADIIKEGMIRFRVLSTEERK-VWAN 58 (81)
T ss_dssp HHHHHHHHHHHCTTCC------SHHHHHHHHHHHHSSSCHHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCCc------hhHHHHHHHHHHHHcCCHHHHH-HHHH
Confidence 4456777888899962 1456778899999999965554 4544
No 65
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=24.05 E-value=44 Score=21.73 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=25.1
Q ss_pred cccccCCCC--CCHHHHHHHHHHHHHHhCCCCCC
Q 033459 12 YDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVA 43 (119)
Q Consensus 12 Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~ 43 (119)
|.-||.+.. ++-+.|-.|+..=++..|||.+.
T Consensus 94 ~~WLG~Pd~~sidg~t~l~a~lt~sl~nhP~~f~ 127 (136)
T 1xs0_A 94 LTWLNVNDALSIDGKTVLFAALTGSLENHPDGFN 127 (136)
T ss_dssp EEEECSSCCCCHHHHHHHHHHHHTHHHHSTTSCC
T ss_pred eEecCCCChhhcccHHHHHHHHhcchhcCccccc
Confidence 556888654 45677899999999999999864
No 66
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=24.04 E-value=60 Score=19.63 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHhCC
Q 033459 20 SADGNEIKAAYRRLARTCHP 39 (119)
Q Consensus 20 ~as~~~Ik~ayr~l~~~~HP 39 (119)
.-+.++||.+|..++++..-
T Consensus 66 ~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 66 KRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 46899999999998887643
No 67
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=23.58 E-value=1e+02 Score=17.03 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
.+.++..++.-||+.. ..+....|.+.|..|++..+..-.+
T Consensus 14 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH-------NAEISKRLGKRWKLLKDSDKIPFIQ 54 (79)
T ss_dssp HHHHHHHHHTTSTTSC-------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC-------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556677777888852 3457788999999998555444333
No 68
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=23.38 E-value=83 Score=17.55 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
.+.++..++.-||+.. ..+....|.+.|..|++..+..-.+
T Consensus 14 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMH-------NSEISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHHHTTSTTSC-------HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3445666777888852 3456788999999998655444333
No 69
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=22.44 E-value=54 Score=18.91 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459 20 SADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRA 76 (119)
Q Consensus 20 ~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 76 (119)
+.+-..+-+.|-++... +|+.. ..|++|-+.|.-..+|+.||-.
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~~------------i~l~~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDGV------------LDLKLAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTTE------------EEHHHHHHHTTTCCTHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCCc------------CcHHHHHHHhCCccceehhhHH
Confidence 34667778888887764 34421 2367777777754799999953
No 70
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.13 E-value=1.1e+02 Score=16.85 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHH---HHHHHHcCC-ch-HHHHHHHHhH
Q 033459 24 NEIKAAYRRLARTCHPDVVATNQKEMSANEFIKI---HAAYSTLSD-PH-KRANYDRALF 78 (119)
Q Consensus 24 ~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i---~~Ay~~L~d-~~-~R~~YD~~l~ 78 (119)
+|..++|.+|.+...=|..- . -.+....| ..-|.+|.| |. ++..|+..+.
T Consensus 3 eEae~aF~~lL~~~~V~s~w--s---weqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~ 57 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTW--S---FSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS 57 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSC--C---HHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCC--c---HHHHHHHhccCCCccccccCCHHHHHHHHHHHHh
Confidence 56788999999987555321 1 23344444 458999997 65 7788887664
No 71
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=22.11 E-value=1.1e+02 Score=16.83 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
.+..|..++.-||+.. ..+....|.+.|..|++..+..-.+
T Consensus 18 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS-------IGDVAKKLGEMWNNTAADDKQPYEK 58 (77)
T ss_dssp HHHHHHHHHHHCTTCC-------HHHHHHHHHHHHHHSCGGGSHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455666777789851 4567788999999999766544433
No 72
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=21.80 E-value=1.5e+02 Score=18.15 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 033459 24 NEIKAAYRRLARTCHPDV 41 (119)
Q Consensus 24 ~~Ik~ayr~l~~~~HPDk 41 (119)
++++.-||.+++.|-.+-
T Consensus 12 ~~L~~~YR~ill~YF~~d 29 (102)
T 1r5q_A 12 QQLKSDYRQILLSYFTTD 29 (102)
T ss_dssp HHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 678999999999987663
No 73
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=21.19 E-value=1.6e+02 Score=18.30 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhCCCC
Q 033459 23 GNEIKAAYRRLARTCHPDV 41 (119)
Q Consensus 23 ~~~Ik~ayr~l~~~~HPDk 41 (119)
-++++.-||.+++.|-.+-
T Consensus 18 l~~L~~~YR~ill~YF~~d 36 (111)
T 1v2z_A 18 LDELRSIYRTIVLEYFNTD 36 (111)
T ss_dssp HHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 4678999999999987663
No 74
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=21.13 E-value=1.4e+02 Score=17.62 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
.+..|..++.-||+.. ..+....|.+.|..|++..+..-.+
T Consensus 22 ~~~~r~~ik~~~P~~~-------~~eisk~lg~~Wk~ls~eeK~~Y~~ 62 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMS-------NLDLTKILSKKYKELPEKKKMKYIQ 62 (99)
T ss_dssp HHHHHHHHHTTCTTSC-------SHHHHHHHHHHHHHSCSTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455666777788852 3456788999999999876544443
No 75
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.11 E-value=1.1e+02 Score=18.19 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 71 (119)
.+.+|..++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 29 ~~~~r~~i~~~~P~~~-------~~eisk~lg~~Wk~ls~eeK~~ 66 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT-------FGEVSKIVASMWDGLGEEQKQV 66 (102)
T ss_dssp HHHHHHHHHHHCTTSC-------HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHccCCHHHHHH
Confidence 3455666777899852 3556778888999888665433
No 76
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=21.09 E-value=75 Score=19.24 Aligned_cols=18 Identities=11% Similarity=0.253 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 033459 20 SADGNEIKAAYRRLARTC 37 (119)
Q Consensus 20 ~as~~~Ik~ayr~l~~~~ 37 (119)
.-+.++||.+|..++++.
T Consensus 66 ~RtvEdLK~RYY~V~~~l 83 (93)
T 4iej_A 66 KRSVEDLKERYYHICAKL 83 (93)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 468899999999988875
No 77
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=21.03 E-value=84 Score=17.22 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.0
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRLA 34 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l~ 34 (119)
|=+|+.+++.++|+..|.+..
T Consensus 11 V~nLp~~~t~~~l~~~F~~~~ 31 (87)
T 2hzc_A 11 VGNIPFGITEEAMMDFFNAQM 31 (87)
T ss_dssp EESCCTTCCHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHh
Confidence 457899999999999998874
No 78
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=20.92 E-value=1.2e+02 Score=18.22 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
.+.+|..++.-||+.. ..+..+.|.+.|..|++..+..-.+
T Consensus 41 ~~~~r~~~k~~~P~~~-------~~eisk~lg~~Wk~ls~eeK~~Y~~ 81 (106)
T 4euw_A 41 AQAARRKLADQYPHLH-------NAELSKTLGKLWRLLNESEKRPFVE 81 (106)
T ss_dssp HHHHHHHHHHHCTTSC-------HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566777788899852 3457788999999998655544433
No 79
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.82 E-value=57 Score=20.43 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=19.1
Q ss_pred CCccCccccccCCCCCCHHHHHHH
Q 033459 6 SSSSSLYDVLGIPVSADGNEIKAA 29 (119)
Q Consensus 6 ~~~~~~Y~iLgv~~~as~~~Ik~a 29 (119)
..++.+|.||.++...+..+|-+.
T Consensus 17 v~~~ePftI~~~~~~STAkdvl~q 40 (110)
T 2bye_A 17 VPGPEPFTVFTINGGTKAKQLLQQ 40 (110)
T ss_dssp CSSSSSSEEEECCTTCCHHHHHHH
T ss_pred CCCCCCcEEEEecCCCcHHHHHHH
Confidence 356789999999999888776544
No 80
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=20.60 E-value=77 Score=17.48 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD 74 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 74 (119)
.+.+|..++.-||+... .+..+.|.+.|..|++..+ ..|.
T Consensus 16 ~~~~r~~~~~~~p~~~~-------~eisk~lg~~Wk~ls~~eK-~~y~ 55 (76)
T 1hry_A 16 SRDQRRKMALENPRMRN-------SEISKQLGYQWKMLTEAEK-WPFF 55 (76)
T ss_dssp HHHHHHHHHHHCSCCSS-------SHHHHHHHHHHHTCCHHHH-HHHH
T ss_pred HHHHHHHHHHHCcCCCH-------HHHHHHHHhHHHhCCHHHH-HHHH
Confidence 34566677778998632 2356788999999985544 4444
No 81
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=20.42 E-value=89 Score=17.55 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459 27 KAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 75 (119)
Q Consensus 27 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 75 (119)
.+.++..++.-||+... .+..+.|.+.|..|++.. |..|..
T Consensus 19 ~~~~r~~~~~~~p~~~~-------~eisk~lg~~Wk~ls~~e-K~~y~~ 59 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN-------RGATKILADWWAVLDPKE-KQKYTD 59 (82)
T ss_dssp HHHHHHHHHHHCSSSCT-------THHHHHHHHHHHTCCHHH-HHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-------HHHHHHHHHHHhhCCHHH-HHHHHH
Confidence 45567777788998532 345678999999998655 445543
No 82
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=20.26 E-value=64 Score=17.25 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=16.2
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033459 14 VLGIPVSADGNEIKAAYRRL 33 (119)
Q Consensus 14 iLgv~~~as~~~Ik~ayr~l 33 (119)
|=+|+++++.++|+..|.+.
T Consensus 4 v~nlp~~~t~~~l~~~F~~~ 23 (75)
T 2mss_A 4 VGGLSVNTTVEDVKHYFEQF 23 (75)
T ss_dssp EECCCSSCCHHHHHHHHHTT
T ss_pred EecCCCCCCHHHHHHHHHhc
Confidence 34789999999999988653
Done!