BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033460
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SNY|A Chain A, Carbonyl Reductase Sniffer Of D. Melanogaster
Length = 267
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 58 SSVLGSEEAAKDALLYSYKTAASGFSA-------KLTPQQVDEISKQPG 99
SS+LGS + D Y+Y+T+ S +A L PQ++ +S PG
Sbjct: 172 SSILGSIQGNTDGGXYAYRTSKSALNAATKSLSVDLYPQRIXCVSLHPG 220
>pdb|3ZSS|A Chain A, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|B Chain B, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|C Chain C, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|D Chain D, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZST|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZST|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZT5|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT6|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT7|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
Length = 695
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 47 EEPESFHLRILSSVLGSEE-----AAKDALLYSYKTAASGFSAKLTPQQVDEISKQP 98
EE + R + V G E+ AA DAL + AAS +A LTPQ +++ P
Sbjct: 153 EEGARLYERAAADVPGREDRRELLAAVDALRDESRPAASRLAAALTPQVDAVLARHP 209
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 47 EEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPS 106
EEP + R + ++ + A + KT +A Q++D K P L + P+
Sbjct: 42 EEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAAL---QRIDTSVKAPQALXLAPT 98
Query: 107 RTLQLH 112
R L L
Sbjct: 99 RELALQ 104
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 47 EEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPS 106
EEP + R + ++ + A + KT +A Q++D K P L + P+
Sbjct: 43 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL---QRIDTSVKAPQALMLAPT 99
Query: 107 RTLQLH 112
R L L
Sbjct: 100 RELALQ 105
>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|D Chain D, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 137
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 6 RKNFLSSAVILWILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSVL 61
+ F + W+ + +T +P + S + +YT+ + E P+ ++ + L
Sbjct: 36 KSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKEINIDFQTKTL 91
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs2
Length = 146
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 6 RKNFLSSAVILWILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSVL 61
+ F + W+ + +T +P + S + +YT+ + E P+ ++ + L
Sbjct: 45 KSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKEINIDFQTKTL 100
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 61 LGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQ-PGVLQV-VPSRTLQLH 112
+GSEE + LL K A + L P++VD + ++ P V+ + + S T++L+
Sbjct: 401 VGSEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIASTTMKLN 454
>pdb|2K6V|A Chain A, Solution Structures Of Apo Sco1 Protein From Thermus
Thermophilus
Length = 172
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 18 ILIVEMAETTAPPQAESAVQIVYTE-RPQDEEPE-------SFHLRILSSVLGSEEAAKD 69
+L ++ A PP+A+ VQ+++ P+ + PE +FH L + GS EA ++
Sbjct: 55 LLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFL-GLSGSPEAVRE 113
Query: 70 A 70
A
Sbjct: 114 A 114
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 18 ILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSV-LGSEEAAKDALLYSYK 76
I +VE T+ E+ QIV+T Q + +S IL V G +AA L + +
Sbjct: 340 IDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQR 399
Query: 77 TAASGFSAKLTPQQV 91
AA+ AK++ +QV
Sbjct: 400 QAAALTQAKMSLEQV 414
>pdb|1JJU|A Chain A, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|A Chain A, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 489
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 28 APPQAESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASG-----F 82
A +A++A Q++ + + E LR+ + LGS+ + + S ++A +G
Sbjct: 268 AAVKADAAPQVLAVAPARLKIGEETQLRVAGTGLGSDLTLPEGVAGSVESAGNGVTVLKL 327
Query: 83 SAKLTP---------QQVDEIS-KQPGVLQVVPSRTLQLHSGHG 116
+A TP Q+VD ++ +P + +VP T+ G+G
Sbjct: 328 TATGTPGPVSLELGGQKVDLVAYDRPDRISIVPDLTIARIGGNG 371
>pdb|2XHG|A Chain A, Crystal Structure Of The Epimerization Domain From The
Initiation Module Of Tyrocidine Biosynthesis
Length = 466
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 49 PESFHLRILSSVLGSEEAAKDALLYSYKTAAS-------GFSAKLTPQQVDEISKQPGVL 101
PE F +++ SV+ DAL Y+ G +L ++ QP V
Sbjct: 47 PEGFDPKVIQSVMDKIIEHHDALRMVYQHENGNVVQHNRGLGGQLYDFFSYNLTAQPDVQ 106
Query: 102 QVVPSRTLQLHS 113
Q + + T +LHS
Sbjct: 107 QAIEAETQRLHS 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,121,816
Number of Sequences: 62578
Number of extensions: 95256
Number of successful extensions: 153
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 15
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)