Query 033460
Match_columns 119
No_of_seqs 159 out of 1108
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:31:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05922 Inhibitor_I9: Peptida 99.7 5.6E-18 1.2E-22 108.2 5.7 77 36-112 1-82 (82)
2 KOG1153 Subtilisin-related pro 94.8 0.025 5.4E-07 47.3 2.9 83 31-113 77-180 (501)
3 PF07172 GRP: Glycine rich pro 77.5 2.4 5.3E-05 28.2 2.5 20 7-26 4-23 (95)
4 TIGR00624 tag DNA-3-methyladen 54.9 5.7 0.00012 29.4 0.8 30 72-101 52-85 (179)
5 PF03352 Adenine_glyco: Methyl 50.3 7.7 0.00017 28.7 0.9 30 72-101 48-81 (179)
6 PF09902 DUF2129: Uncharacteri 50.0 23 0.00049 22.4 2.9 27 89-115 44-70 (71)
7 PRK10353 3-methyl-adenine DNA 49.5 6.6 0.00014 29.3 0.4 30 72-101 53-86 (187)
8 COG2818 Tag 3-methyladenine DN 44.0 8.9 0.00019 28.7 0.4 30 72-101 54-87 (188)
9 PRK02302 hypothetical protein; 39.8 31 0.00068 22.7 2.4 28 89-116 50-77 (89)
10 PF12751 Vac7: Vacuolar segreg 37.5 58 0.0013 27.0 4.1 39 5-43 302-340 (387)
11 PRK02886 hypothetical protein; 37.2 38 0.00081 22.3 2.5 29 88-116 47-75 (87)
12 PF00737 PsbH: Photosystem II 33.8 88 0.0019 18.6 3.4 23 2-24 22-46 (52)
13 cd04901 ACT_3PGDH C-terminal A 29.5 71 0.0015 18.4 2.7 19 86-104 49-67 (69)
14 PF11080 DUF2622: Protein of u 28.0 1E+02 0.0022 20.6 3.4 66 31-96 3-70 (96)
15 PF13291 ACT_4: ACT domain; PD 27.3 68 0.0015 19.4 2.4 16 90-105 65-80 (80)
16 PF11837 DUF3357: Domain of un 25.9 23 0.00049 23.8 0.0 24 3-26 25-48 (106)
17 cd04888 ACT_PheB-BS C-terminal 25.6 85 0.0018 18.4 2.6 14 91-104 60-73 (76)
18 MTH00260 ATP8 ATP synthase F0 25.4 1.5E+02 0.0032 17.5 3.5 19 1-19 1-19 (53)
19 cd04877 ACT_TyrR N-terminal AC 25.3 76 0.0016 19.1 2.3 19 89-107 53-71 (74)
20 PF15240 Pro-rich: Proline-ric 24.7 56 0.0012 24.3 1.9 15 12-26 2-16 (179)
21 MTH00147 ATP8 ATP synthase F0 24.7 1.5E+02 0.0033 17.1 3.5 21 1-21 1-21 (51)
22 COG3062 NapD Uncharacterized p 23.9 81 0.0018 21.0 2.3 16 89-104 58-73 (94)
23 cd04879 ACT_3PGDH-like ACT_3PG 23.8 97 0.0021 17.3 2.6 18 87-104 52-69 (71)
24 PF13442 Cytochrome_CBB3: Cyto 23.7 67 0.0014 18.8 1.8 20 77-96 46-65 (67)
25 PRK04561 tatA twin arginine tr 23.1 1.1E+02 0.0024 19.5 2.8 19 1-19 1-19 (75)
26 PRK10894 lipopolysaccharide tr 22.8 1.6E+02 0.0034 21.2 4.0 15 8-22 4-18 (180)
27 PF05887 Trypan_PARP: Procycli 22.6 29 0.00062 24.8 0.0 25 7-31 6-30 (143)
28 PF09625 VP9: VP9 protein; In 21.9 72 0.0016 20.6 1.7 14 33-46 36-49 (79)
29 PF01037 AsnC_trans_reg: AsnC 21.8 1.2E+02 0.0026 17.6 2.8 18 88-105 13-30 (74)
30 PF00633 HHH: Helix-hairpin-he 21.5 36 0.00077 17.7 0.2 12 89-100 8-19 (30)
31 MTH00072 ATP8 ATP synthase F0 21.5 1.7E+02 0.0038 16.6 3.3 22 1-22 1-22 (54)
32 PF08194 DIM: DIM protein; In 21.3 1.3E+02 0.0027 16.6 2.4 6 34-39 23-28 (36)
33 cd04903 ACT_LSD C-terminal ACT 20.9 1.1E+02 0.0024 17.2 2.4 19 86-104 51-69 (71)
34 PRK02958 tatA twin arginine tr 20.0 1.4E+02 0.0031 18.9 2.8 19 1-19 1-19 (73)
No 1
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=99.73 E-value=5.6e-18 Score=108.22 Aligned_cols=77 Identities=34% Similarity=0.508 Sum_probs=58.4
Q ss_pred eEEEEeCCCCCCCc-hHHHHHHHHHhhCch----hhhhcceeeeeccccccccccCCHHHHHHHhcCCCeEEEEcCCcee
Q 033460 36 VQIVYTERPQDEEP-ESFHLRILSSVLGSE----EAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQ 110 (119)
Q Consensus 36 ~YIV~m~~~~~~~~-~~~h~~~l~s~~~s~----~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~~pgV~~V~~D~~~~ 110 (119)
+|||.|+++..... .++|.+|+.+.+.+. ......++|+|+..||||+++|+++++++|++.|+|.+|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999865444 677888888654432 1124579999999999999999999999999999999999999999
Q ss_pred cc
Q 033460 111 LH 112 (119)
Q Consensus 111 lh 112 (119)
+|
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 86
No 2
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.025 Score=47.28 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=62.0
Q ss_pred CCCCCeEEEEeCCCCCCCchHHHHHHHHHhhCchhh-----h------------hc-ceeeeec---cccccccccCCHH
Q 033460 31 QAESAVQIVYTERPQDEEPESFHLRILSSVLGSEEA-----A------------KD-ALLYSYK---TAASGFSAKLTPQ 89 (119)
Q Consensus 31 ~~~~~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~-----~------------~~-~i~ysY~---~~~~GFaa~lt~~ 89 (119)
...++.|||+.++.......+.|.+|+...+..... . .. .+...|. ..++||...++++
T Consensus 77 ~~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~ 156 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGE 156 (501)
T ss_pred cccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccc
Confidence 446899999999766555567788888765431100 0 01 2455565 4899999999999
Q ss_pred HHHHHhcCCCeEEEEcCCceeccc
Q 033460 90 QVDEISKQPGVLQVVPSRTLQLHS 113 (119)
Q Consensus 90 e~~~L~~~pgV~~V~~D~~~~lhT 113 (119)
-...++..|-+..+++|..++..+
T Consensus 157 ~v~~i~~~p~~~~ve~~~~v~~~~ 180 (501)
T KOG1153|consen 157 SVCSIRSDPLIKAVEKDSVVEVDK 180 (501)
T ss_pred eeeeeccCcceeeccccccccccc
Confidence 999999999999999999887765
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=77.49 E-value=2.4 Score=28.16 Aligned_cols=20 Identities=30% Similarity=0.394 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 033460 7 KNFLSSAVILWILIVEMAET 26 (119)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (119)
+.||++.++|+.+++.++..
T Consensus 4 K~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 44666666665544444433
No 4
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.95 E-value=5.7 Score=29.38 Aligned_cols=30 Identities=30% Similarity=0.606 Sum_probs=25.6
Q ss_pred eeeecccccccc----ccCCHHHHHHHhcCCCeE
Q 033460 72 LYSYKTAASGFS----AKLTPQQVDEISKQPGVL 101 (119)
Q Consensus 72 ~ysY~~~~~GFa----a~lt~~e~~~L~~~pgV~ 101 (119)
.-.|..+|.||- |.++|+++++|...|++.
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~II 85 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGII 85 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccch
Confidence 446778899986 889999999999999965
No 5
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=50.29 E-value=7.7 Score=28.69 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=24.0
Q ss_pred eeeecccccccc----ccCCHHHHHHHhcCCCeE
Q 033460 72 LYSYKTAASGFS----AKLTPQQVDEISKQPGVL 101 (119)
Q Consensus 72 ~ysY~~~~~GFa----a~lt~~e~~~L~~~pgV~ 101 (119)
.-.|..+|.||- |.++++++++|.+.|++.
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iI 81 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGII 81 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchh
Confidence 346778999996 899999999999999975
No 6
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=50.02 E-value=23 Score=22.35 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCeEEEEcCCceecccCC
Q 033460 89 QQVDEISKQPGVLQVVPSRTLQLHSGH 115 (119)
Q Consensus 89 ~e~~~L~~~pgV~~V~~D~~~~lhTt~ 115 (119)
+.++.|++.+.|..|++...-.+.|+.
T Consensus 44 ~~~~kl~~l~fVk~Ve~S~~~~l~~~f 70 (71)
T PF09902_consen 44 EIIEKLKKLKFVKKVEPSPRPELDTEF 70 (71)
T ss_pred HHHHHHhcCCCeeEEeccChhhccCCC
Confidence 445788999999999999888887763
No 7
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=49.52 E-value=6.6 Score=29.28 Aligned_cols=30 Identities=17% Similarity=0.468 Sum_probs=25.7
Q ss_pred eeeecccccccc----ccCCHHHHHHHhcCCCeE
Q 033460 72 LYSYKTAASGFS----AKLTPQQVDEISKQPGVL 101 (119)
Q Consensus 72 ~ysY~~~~~GFa----a~lt~~e~~~L~~~pgV~ 101 (119)
...|..+|.||- |.++|+++++|...|++.
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~II 86 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGII 86 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhH
Confidence 456778899986 889999999999999964
No 8
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=43.96 E-value=8.9 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=26.4
Q ss_pred eeeecccccccc----ccCCHHHHHHHhcCCCeE
Q 033460 72 LYSYKTAASGFS----AKLTPQQVDEISKQPGVL 101 (119)
Q Consensus 72 ~ysY~~~~~GFa----a~lt~~e~~~L~~~pgV~ 101 (119)
...|..+|.||- |.++++++++|...+|++
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gII 87 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGII 87 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchh
Confidence 456889999996 899999999999999975
No 9
>PRK02302 hypothetical protein; Provisional
Probab=39.85 E-value=31 Score=22.75 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCeEEEEcCCceecccCCC
Q 033460 89 QQVDEISKQPGVLQVVPSRTLQLHSGHG 116 (119)
Q Consensus 89 ~e~~~L~~~pgV~~V~~D~~~~lhTt~~ 116 (119)
+.+++|++.+-|..|++...-.|.|+..
T Consensus 50 ~~~~kl~~l~fVk~Ve~S~~~~l~~~f~ 77 (89)
T PRK02302 50 QKLEELSKLKFVKKVRPSAIDEIDQNFV 77 (89)
T ss_pred HHHHHHhcCCCeeEEcccCchhccchhh
Confidence 4457889999999999999888887654
No 10
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=37.51 E-value=58 Score=27.03 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCCCCCCCCeEEEEeCC
Q 033460 5 SRKNFLSSAVILWILIVEMAETTAPPQAESAVQIVYTER 43 (119)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YIV~m~~ 43 (119)
...|.++.+++++++-+.+.+--|....-.+.-||.++.
T Consensus 302 ~~~c~~~~i~~lL~ig~~~gFv~AttKpL~~v~v~~I~N 340 (387)
T PF12751_consen 302 FASCIYLSILLLLVIGFAIGFVFATTKPLTDVQVVSIQN 340 (387)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEeee
Confidence 346766666665555454444444434446777777665
No 11
>PRK02886 hypothetical protein; Provisional
Probab=37.25 E-value=38 Score=22.28 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCeEEEEcCCceecccCCC
Q 033460 88 PQQVDEISKQPGVLQVVPSRTLQLHSGHG 116 (119)
Q Consensus 88 ~~e~~~L~~~pgV~~V~~D~~~~lhTt~~ 116 (119)
++.++.|++.+-|..|++...-.|.|+..
T Consensus 47 e~~~~kl~~l~fVk~Ve~S~r~~l~~~y~ 75 (87)
T PRK02886 47 EDIMNKLSSLPFVKRVEPSYRPFLKTEFE 75 (87)
T ss_pred HHHHHHHhcCCCeeEEcccCCchhhhhhh
Confidence 34457889999999999999888888764
No 12
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=33.78 E-value=88 Score=18.61 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=13.5
Q ss_pred CCcch--HHHHHHHHHHHHHHHHHh
Q 033460 2 QGRSR--KNFLSSAVILWILIVEMA 24 (119)
Q Consensus 2 ~~~~~--~~~~~~~~~~~~~~~~~~ 24 (119)
||-.| -.++.+|++++++++-.-
T Consensus 22 WGTtplM~~~m~lf~vfl~iiL~Iy 46 (52)
T PF00737_consen 22 WGTTPLMGVFMALFAVFLLIILEIY 46 (52)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHh
Confidence 55554 556666666666655543
No 13
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=29.50 E-value=71 Score=18.40 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=16.3
Q ss_pred CCHHHHHHHhcCCCeEEEE
Q 033460 86 LTPQQVDEISKQPGVLQVV 104 (119)
Q Consensus 86 lt~~e~~~L~~~pgV~~V~ 104 (119)
..++-+++|++.|+|..|.
T Consensus 49 ~l~~li~~l~~~~~V~~v~ 67 (69)
T cd04901 49 VSEELLEALRAIPGTIRVR 67 (69)
T ss_pred CCHHHHHHHHcCCCeEEEE
Confidence 5667789999999999885
No 14
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=28.01 E-value=1e+02 Score=20.60 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=33.7
Q ss_pred CCCCCeEEEEeCCCCCC-CchHHHHHHHHH-hhCchhhhhcceeeeeccccccccccCCHHHHHHHhc
Q 033460 31 QAESAVQIVYTERPQDE-EPESFHLRILSS-VLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISK 96 (119)
Q Consensus 31 ~~~~~~YIV~m~~~~~~-~~~~~h~~~l~s-~~~s~~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~ 96 (119)
+++-.+|||.++-.... +....-.+.+.. -+........+..|.-...=-|+.-.+++++++.+.+
T Consensus 3 ~~~~~~YVVt~~~~e~~l~d~~~L~~~lt~~GF~~tl~D~~G~~HeLgtntfgl~S~l~~~eV~~la~ 70 (96)
T PF11080_consen 3 SSDITRYVVTFEYQEAGLTDINELNNHLTRAGFSTTLTDEDGNPHELGTNTFGLISALSAEEVAQLAR 70 (96)
T ss_pred CCcceEEEEEEEeccCChHHHHHHHHHHHhcCceeEEecCCCCEeecCCCeEEEEecCCHHHHHHHHH
Confidence 34578999998843322 111111111111 0110001123456666555567777789999987765
No 15
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=27.28 E-value=68 Score=19.44 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=12.8
Q ss_pred HHHHHhcCCCeEEEEc
Q 033460 90 QVDEISKQPGVLQVVP 105 (119)
Q Consensus 90 e~~~L~~~pgV~~V~~ 105 (119)
-++.|++.|||..|+.
T Consensus 65 ii~~L~~i~~V~~V~R 80 (80)
T PF13291_consen 65 IIRKLRQIPGVISVER 80 (80)
T ss_dssp HHHHHCTSTTEEEEEE
T ss_pred HHHHHHCCCCeeEEEC
Confidence 3478899999999873
No 16
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=25.88 E-value=23 Score=23.78 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhh
Q 033460 3 GRSRKNFLSSAVILWILIVEMAET 26 (119)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (119)
+|+.++++.+|.-+++++++++..
T Consensus 25 rR~~k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 25 RRPLKCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp ------------------------
T ss_pred CCcchhHHHHHHHHHHHHHHHHHH
Confidence 344578877777666665555544
No 17
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.64 E-value=85 Score=18.43 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.1
Q ss_pred HHHHhcCCCeEEEE
Q 033460 91 VDEISKQPGVLQVV 104 (119)
Q Consensus 91 ~~~L~~~pgV~~V~ 104 (119)
++.|++.|||..|+
T Consensus 60 ~~~L~~i~~V~~v~ 73 (76)
T cd04888 60 LEELREIDGVEKVE 73 (76)
T ss_pred HHHHhcCCCeEEEE
Confidence 57889999999886
No 18
>MTH00260 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=25.40 E-value=1.5e+02 Score=17.46 Aligned_cols=19 Identities=26% Similarity=0.665 Sum_probs=11.6
Q ss_pred CCCcchHHHHHHHHHHHHH
Q 033460 1 MQGRSRKNFLSSAVILWIL 19 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (119)
|+-.+|..-+.+|+++.+.
T Consensus 1 MPQmsPm~W~~l~~~f~~~ 19 (53)
T MTH00260 1 MPHLSPMSWLTAMIIFWFI 19 (53)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 6677786666665555333
No 19
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=25.27 E-value=76 Score=19.06 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=14.6
Q ss_pred HHHHHHhcCCCeEEEEcCC
Q 033460 89 QQVDEISKQPGVLQVVPSR 107 (119)
Q Consensus 89 ~e~~~L~~~pgV~~V~~D~ 107 (119)
.-.++|++.|||..|+.=.
T Consensus 53 ~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 53 TLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred HHHHHHhCCCCceEEEEee
Confidence 3457889999999998643
No 20
>PF15240 Pro-rich: Proline-rich
Probab=24.73 E-value=56 Score=24.29 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhhh
Q 033460 12 SAVILWILIVEMAET 26 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~ 26 (119)
|+|||++.+++.+++
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 344444444444433
No 21
>MTH00147 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=24.69 E-value=1.5e+02 Score=17.14 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=12.7
Q ss_pred CCCcchHHHHHHHHHHHHHHH
Q 033460 1 MQGRSRKNFLSSAVILWILIV 21 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (119)
|+-.+|..-+++++++.+.+.
T Consensus 1 MPQmsPm~W~~l~~~~~~~~~ 21 (51)
T MTH00147 1 MPQLSPLNWIFLFILFWSAVI 21 (51)
T ss_pred CCCCcchHHHHHHHHHHHHHH
Confidence 667778666666655544433
No 22
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=23.91 E-value=81 Score=21.03 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=13.0
Q ss_pred HHHHHHhcCCCeEEEE
Q 033460 89 QQVDEISKQPGVLQVV 104 (119)
Q Consensus 89 ~e~~~L~~~pgV~~V~ 104 (119)
+.++.+++.|||..|.
T Consensus 58 ~tie~i~nl~gVlav~ 73 (94)
T COG3062 58 ETIESIRNLPGVLAVS 73 (94)
T ss_pred HHHHHHhcCCceeEEE
Confidence 5677889999999875
No 23
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=23.80 E-value=97 Score=17.30 Aligned_cols=18 Identities=22% Similarity=0.589 Sum_probs=15.3
Q ss_pred CHHHHHHHhcCCCeEEEE
Q 033460 87 TPQQVDEISKQPGVLQVV 104 (119)
Q Consensus 87 t~~e~~~L~~~pgV~~V~ 104 (119)
.++-+++|++.|||..|.
T Consensus 52 ~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 52 PEEVLEELKALPGIIRVR 69 (71)
T ss_pred CHHHHHHHHcCCCeEEEE
Confidence 457779999999999886
No 24
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=23.72 E-value=67 Score=18.78 Aligned_cols=20 Identities=10% Similarity=0.408 Sum_probs=16.7
Q ss_pred cccccccccCCHHHHHHHhc
Q 033460 77 TAASGFSAKLTPQQVDEISK 96 (119)
Q Consensus 77 ~~~~GFaa~lt~~e~~~L~~ 96 (119)
..+-+|...|+++|++.|..
T Consensus 46 ~~Mp~~~~~ls~~e~~~l~~ 65 (67)
T PF13442_consen 46 GGMPPFGGQLSDEEIEALAA 65 (67)
T ss_dssp TTBSCTTTTSTHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHH
Confidence 46888888999999998853
No 25
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=23.11 E-value=1.1e+02 Score=19.51 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=10.9
Q ss_pred CCCcchHHHHHHHHHHHHH
Q 033460 1 MQGRSRKNFLSSAVILWIL 19 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (119)
|.|.++.-.+.++++.+++
T Consensus 1 Mgg~s~~ellIIlvIvlLl 19 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVLLV 19 (75)
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 6777776555555544333
No 26
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=22.81 E-value=1.6e+02 Score=21.23 Aligned_cols=15 Identities=13% Similarity=-0.049 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 033460 8 NFLSSAVILWILIVE 22 (119)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (119)
.||.++++++++++.
T Consensus 4 ~~~~~~~~~~ll~~~ 18 (180)
T PRK10894 4 LSLNLLLASSLLAAS 18 (180)
T ss_pred hHHHHHHHHHHHHHH
Confidence 455555555444433
No 27
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=22.57 E-value=29 Score=24.78 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCC
Q 033460 7 KNFLSSAVILWILIVEMAETTAPPQ 31 (119)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (119)
+|||.++++.+.++.....+++++.
T Consensus 6 l~~LavLL~~A~Lfag~g~AaAade 30 (143)
T PF05887_consen 6 LCLLAVLLFGAALFAGVGSAAAADE 30 (143)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5666666666555444444444433
No 28
>PF09625 VP9: VP9 protein; InterPro: IPR018587 VP9 is a protein containing a ferredoxin fold. Two dimers come together to form one asymmetric unit which possesses a DNA recognition fold and specific metal binding sites possibly for zinc. It is postulated that being a non-structural protein VP9 is involved in the transcriptional regulation of the White spot syndrome virus (WSSV), from which it comes. WSSV is the major viral pathogen in shrimp aquaculture []. VP9 is found N-terminal to the IPR009766 from INTERPRO. ; PDB: 2ZUG_A 2GJ2_A 2GJI_A.
Probab=21.86 E-value=72 Score=20.56 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=9.2
Q ss_pred CCCeEEEEeCCCCC
Q 033460 33 ESAVQIVYTERPQD 46 (119)
Q Consensus 33 ~~~~YIV~m~~~~~ 46 (119)
..+.|||.++++..
T Consensus 36 ~d~~~iV~Lk~~~~ 49 (79)
T PF09625_consen 36 RDGVYIVQLKKGEV 49 (79)
T ss_dssp -TTEEEEEE-TT--
T ss_pred ccceEEEEEecCCE
Confidence 47999999998753
No 29
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=21.81 E-value=1.2e+02 Score=17.60 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=13.5
Q ss_pred HHHHHHHhcCCCeEEEEc
Q 033460 88 PQQVDEISKQPGVLQVVP 105 (119)
Q Consensus 88 ~~e~~~L~~~pgV~~V~~ 105 (119)
++-+++|++.|+|..+..
T Consensus 13 ~~~~~~l~~~p~V~~~~~ 30 (74)
T PF01037_consen 13 DEFAEALAEIPEVVECYS 30 (74)
T ss_dssp HHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEE
Confidence 345678888999988764
No 30
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=21.51 E-value=36 Score=17.65 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=8.3
Q ss_pred HHHHHHhcCCCe
Q 033460 89 QQVDEISKQPGV 100 (119)
Q Consensus 89 ~e~~~L~~~pgV 100 (119)
+..++|.+.|||
T Consensus 8 as~eeL~~lpGI 19 (30)
T PF00633_consen 8 ASIEELMKLPGI 19 (30)
T ss_dssp SSHHHHHTSTT-
T ss_pred CCHHHHHhCCCc
Confidence 456778888887
No 31
>MTH00072 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=21.45 E-value=1.7e+02 Score=16.60 Aligned_cols=22 Identities=9% Similarity=0.357 Sum_probs=13.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHH
Q 033460 1 MQGRSRKNFLSSAVILWILIVE 22 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (119)
|+..+|.--+.+|++.++++++
T Consensus 1 MPQL~P~pW~~~~~~~W~~ll~ 22 (54)
T MTH00072 1 MPQLNPGPWFAIFLMSWLIFLL 22 (54)
T ss_pred CCCCCchHHHHHHHHHHHHHHH
Confidence 6677776666666666555443
No 32
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=21.33 E-value=1.3e+02 Score=16.56 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=3.2
Q ss_pred CCeEEE
Q 033460 34 SAVQIV 39 (119)
Q Consensus 34 ~~~YIV 39 (119)
+|+-||
T Consensus 23 pG~ViI 28 (36)
T PF08194_consen 23 PGNVII 28 (36)
T ss_pred CCeEEE
Confidence 565554
No 33
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.93 E-value=1.1e+02 Score=17.20 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=15.5
Q ss_pred CCHHHHHHHhcCCCeEEEE
Q 033460 86 LTPQQVDEISKQPGVLQVV 104 (119)
Q Consensus 86 lt~~e~~~L~~~pgV~~V~ 104 (119)
-.++-+++|++.+||..|.
T Consensus 51 ~~~~~i~~l~~~~~v~~v~ 69 (71)
T cd04903 51 IDEEVIEEIKKIPNIHQVI 69 (71)
T ss_pred CCHHHHHHHHcCCCceEEE
Confidence 4556789999999999875
No 34
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=20.03 E-value=1.4e+02 Score=18.88 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=10.3
Q ss_pred CCCcchHHHHHHHHHHHHH
Q 033460 1 MQGRSRKNFLSSAVILWIL 19 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (119)
|.|.++.-.|.++++.+++
T Consensus 1 mg~~g~~elliIl~Ivlll 19 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLV 19 (73)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 5666665555555444333
Done!