Query 033460
Match_columns 119
No_of_seqs 159 out of 1108
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:21:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2n_P Proprotein convertase s 99.8 1.3E-19 4.3E-24 123.5 4.1 78 33-111 36-113 (114)
2 3cnq_P Subtilisin BPN'; unclea 99.7 1.5E-17 5E-22 106.0 8.8 75 32-116 6-80 (80)
3 2qtw_A Proprotein convertase s 99.6 6.9E-17 2.4E-21 111.6 4.1 77 34-111 47-123 (124)
4 1v5i_B POIA1, IA-1=serine prot 99.6 9.8E-16 3.3E-20 97.3 5.6 71 34-111 2-75 (76)
5 2p4e_P Proprotein convertase s 99.1 4.3E-11 1.5E-15 102.0 4.7 77 35-112 76-152 (692)
6 2z30_B TK-subtilisin; thermoco 98.3 1E-06 3.5E-11 53.8 5.0 63 35-111 2-64 (65)
7 2z2z_A TK-subtilisin precursor 98.1 2.8E-06 9.7E-11 67.3 5.6 67 34-114 2-68 (395)
8 3afg_A Subtilisin-like serine 97.9 7E-06 2.4E-10 67.9 4.3 71 32-113 33-114 (539)
9 3t41_A Epidermin leader peptid 97.8 6.1E-05 2.1E-09 60.6 7.4 45 70-115 67-112 (471)
10 1r6v_A Subtilisin-like serine 94.2 0.13 4.5E-06 43.7 7.3 66 33-112 30-101 (671)
11 2ofk_A 3-methyladenine DNA gly 63.4 2.4 8.1E-05 30.5 1.1 30 72-101 53-86 (183)
12 2jg6_A DNA-3-methyladenine gly 63.2 2.6 9.1E-05 30.3 1.3 30 72-101 53-86 (186)
13 3ftj_A MACB, macrolide export 47.6 13 0.00045 25.6 2.8 24 83-106 32-55 (226)
14 1gks_A Cytochrome C551; haloph 30.8 26 0.00087 20.2 1.8 20 77-96 53-72 (78)
15 3arc_H Photosystem II reaction 28.6 72 0.0025 18.9 3.4 25 2-26 24-50 (65)
16 1c53_A Cytochrome C553; electr 26.3 22 0.00075 20.5 0.9 21 76-96 54-74 (79)
17 1w2l_A Cytochrome oxidase subu 24.6 44 0.0015 19.6 2.1 22 75-96 72-93 (99)
18 2ko1_A CTR148A, GTP pyrophosph 23.5 70 0.0024 18.3 2.9 24 89-112 61-84 (88)
19 2xf7_A GP23.1; viral protein; 22.9 55 0.0019 18.2 2.1 17 83-99 30-46 (51)
20 1ls9_A Cytochrome C6; omega lo 22.2 46 0.0016 19.4 1.8 20 77-96 61-80 (91)
21 2gj2_A WSV230, VP9; ferredoxin 21.6 57 0.0019 20.3 2.1 16 31-46 40-55 (85)
22 3ph2_B Cytochrome C6; photosyn 21.1 48 0.0017 18.8 1.8 20 77-96 57-76 (86)
23 1c6r_A Cytochrome C6; electron 20.4 53 0.0018 18.9 1.8 20 77-96 59-78 (89)
24 1cyi_A Cytochrome C6, cytochro 20.3 53 0.0018 19.0 1.8 20 77-96 58-77 (90)
25 3dmi_A Cytochrome C6; electron 20.2 54 0.0018 18.7 1.8 20 77-96 58-77 (88)
No 1
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=99.77 E-value=1.3e-19 Score=123.54 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=65.6
Q ss_pred CCCeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeeccccccccccCCHHHHHHHhcCCCeEEEEcCCceec
Q 033460 33 ESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQL 111 (119)
Q Consensus 33 ~~~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~~pgV~~V~~D~~~~l 111 (119)
-+++|||+|+++..+.....|.+|+.+++.+. ....++.|+|++.|+||+|+|+++++++|+++|+|.+||||+++++
T Consensus 36 ip~~YIV~lk~~~~~~~~~~h~~~l~s~~~~~-~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 36 LPGTYVVVLKEETHLSQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHHHHhhhc-ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 37899999998765444567889999876531 1234799999999999999999999999999999999999998875
No 2
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=99.73 E-value=1.5e-17 Score=105.98 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=58.2
Q ss_pred CCCCeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeeccccccccccCCHHHHHHHhcCCCeEEEEcCCceec
Q 033460 32 AESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQL 111 (119)
Q Consensus 32 ~~~~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~~pgV~~V~~D~~~~l 111 (119)
..+++|||+++++.... ..+.+++.. ...++.|+|++ |+||+++|++++++.|+++|+|.+||||+++++
T Consensus 6 ~i~~~YIV~~k~~~~~~--~~~~~~~~~-------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~ 75 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKSC--AKKEDVISE-------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRA 75 (80)
T ss_dssp --CCEEEEEECTTCCSH--HHHHHHHHT-------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEE
T ss_pred cCCCCEEEEECCCCChH--HHHHHHHHH-------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEE
Confidence 34799999999876532 112222221 12468999998 999999999999999999999999999999999
Q ss_pred ccCCC
Q 033460 112 HSGHG 116 (119)
Q Consensus 112 hTt~~ 116 (119)
+||.+
T Consensus 76 ~tt~~ 80 (80)
T 3cnq_P 76 LSATS 80 (80)
T ss_dssp CCC--
T ss_pred eeecC
Confidence 99864
No 3
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=99.65 E-value=6.9e-17 Score=111.62 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=60.0
Q ss_pred CCeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeeccccccccccCCHHHHHHHhcCCCeEEEEcCCceec
Q 033460 34 SAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQL 111 (119)
Q Consensus 34 ~~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~~pgV~~V~~D~~~~l 111 (119)
+++|||+||++..+.....|.+|+.+...... ...++.|+|++.||||+|+|++++++.|+++|+|.+||||++++.
T Consensus 47 p~~YIV~~K~~~~~~~~~~~~~~l~~~~~~r~-~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 47 PGTYVVVLKEETHLSQSERTARRLQAQAARRG-YLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT-CCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHhhcc-cCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 78999999998754444445556554321100 123689999999999999999999999999999999999998875
No 4
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=99.60 E-value=9.8e-16 Score=97.27 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeec-cccccccccCCHHHHHHHhcC--CCeEEEEcCCcee
Q 033460 34 SAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYK-TAASGFSAKLTPQQVDEISKQ--PGVLQVVPSRTLQ 110 (119)
Q Consensus 34 ~~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~-~~~~GFaa~lt~~e~~~L~~~--pgV~~V~~D~~~~ 110 (119)
.++|||+||++........|.+|+... ..++.+.|+ +.|+||+++|++++++.|+++ |.|.+||||++++
T Consensus 2 ~~sYIV~lk~~~~~~~~~~~~~~~~~~-------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~ 74 (76)
T 1v5i_B 2 AGKFIVIFKNDVSEDKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAH 74 (76)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEE
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHhh-------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEe
Confidence 479999999876544455677777653 135899994 899999999999999999999 8899999999887
Q ss_pred c
Q 033460 111 L 111 (119)
Q Consensus 111 l 111 (119)
+
T Consensus 75 ~ 75 (76)
T 1v5i_B 75 A 75 (76)
T ss_dssp C
T ss_pred C
Confidence 5
No 5
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Probab=99.11 E-value=4.3e-11 Score=101.98 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=57.6
Q ss_pred CeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeeccccccccccCCHHHHHHHhcCCCeEEEEcCCceecc
Q 033460 35 AVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQLH 112 (119)
Q Consensus 35 ~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~~pgV~~V~~D~~~~lh 112 (119)
++|||++|++........+.+++....... ....++.++|++.|+||+++++++++++|++.|+|.+||||..+...
T Consensus 76 g~YIV~lk~~~~~~~~~~~~~~l~a~~~~~-g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~ 152 (692)
T 2p4e_P 76 GTYVVVLKEETHLSQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ 152 (692)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHHhhc-ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC
Confidence 489999998765433344445554322110 01236899999999999999999999999999999999999987653
No 6
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=98.30 E-value=1e-06 Score=53.75 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=47.6
Q ss_pred CeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeeccccccccccCCHHHHHHHhcCCCeEEEEcCCceec
Q 033460 35 AVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQL 111 (119)
Q Consensus 35 ~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~~pgV~~V~~D~~~~l 111 (119)
.+|||..+.+... . +++.+ ....+.+.|. .++|+++.|+++.++.|++.|||.+||+|..++.
T Consensus 2 ~~~IV~f~~~~~~-~-----~~i~~-------~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a 64 (65)
T 2z30_B 2 IRVIVSVDKAKFN-P-----HEVLG-------IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL 64 (65)
T ss_dssp EEEEEEECGGGCC-G-----GGGGG-------GTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred eeEEEEEcCcchh-H-----HHHHH-------CCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence 4799999864211 0 11111 1245888886 5999999999999999999999999999997753
No 7
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A
Probab=98.13 E-value=2.8e-06 Score=67.32 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=52.9
Q ss_pred CCeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeeccccccccccCCHHHHHHHhcCCCeEEEEcCCceeccc
Q 033460 34 SAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQLHS 113 (119)
Q Consensus 34 ~~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~~pgV~~V~~D~~~~lhT 113 (119)
+.+|||.++++... .+.+... ...+++.|.. ++||+++++++++++|++.|+|.+|+||..+++++
T Consensus 2 ~~~~iV~~~~~~~~------~~~~~~~-------g~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~ 67 (395)
T 2z2z_A 2 TIRVIVSVDKAKFN------PHEVLGI-------GGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLG 67 (395)
T ss_dssp EEEEEEEECTTTCC------HHHHHHT-------TCEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECC
T ss_pred cEEEEEEECCCccH------HHHHHHc-------CCEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEeeeecccC
Confidence 46899999986421 1233321 2357889975 99999999999999999999999999999998865
Q ss_pred C
Q 033460 114 G 114 (119)
Q Consensus 114 t 114 (119)
+
T Consensus 68 ~ 68 (395)
T 2z2z_A 68 K 68 (395)
T ss_dssp E
T ss_pred C
Confidence 4
No 8
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=97.92 E-value=7e-06 Score=67.92 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=52.0
Q ss_pred CCCCeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeeccccccccccCCHHHHHHH-----------hcCCCe
Q 033460 32 AESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEI-----------SKQPGV 100 (119)
Q Consensus 32 ~~~~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L-----------~~~pgV 100 (119)
.+...|||.++++... ....+++... ...+.|+|+ .++||+++++++++++| ++.|+|
T Consensus 33 ~~~~~~iV~~~~~~~~---~~~~~~~~~~-------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V 101 (539)
T 3afg_A 33 DQEVSTIIMFDNQADK---EKAVEILDFL-------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGV 101 (539)
T ss_dssp TCEEEEEEEESSHHHH---HHHHHHHHHH-------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTE
T ss_pred cCceEEEEEECCCCCH---HHHHHHHHhc-------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCe
Confidence 3455799999875321 1112233322 235889996 69999999999999999 889999
Q ss_pred EEEEcCCceeccc
Q 033460 101 LQVVPSRTLQLHS 113 (119)
Q Consensus 101 ~~V~~D~~~~lhT 113 (119)
.+|++|..+++..
T Consensus 102 ~~v~~d~~~~~~~ 114 (539)
T 3afg_A 102 QFIQEDYVVKVAV 114 (539)
T ss_dssp EEEEECCEEECC-
T ss_pred eEEEecccccccC
Confidence 9999999988754
No 9
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=97.77 E-value=6.1e-05 Score=60.55 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=40.1
Q ss_pred ceeeeeccccccccccCCHHHHHHHhc-CCCeEEEEcCCceecccCC
Q 033460 70 ALLYSYKTAASGFSAKLTPQQVDEISK-QPGVLQVVPSRTLQLHSGH 115 (119)
Q Consensus 70 ~i~ysY~~~~~GFaa~lt~~e~~~L~~-~pgV~~V~~D~~~~lhTt~ 115 (119)
.+++.|. .++||+++++++++++|++ .|+|.+|+||..++++++.
T Consensus 67 ~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~ 112 (471)
T 3t41_A 67 NVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEK 112 (471)
T ss_dssp EEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCC
T ss_pred EEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceecccccc
Confidence 4677775 4999999999999999999 9999999999998887654
No 10
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1
Probab=94.16 E-value=0.13 Score=43.67 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=43.9
Q ss_pred CCCeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeeccccccccccCCH---HH-HHHHhc--CCCeEEEEcC
Q 033460 33 ESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTP---QQ-VDEISK--QPGVLQVVPS 106 (119)
Q Consensus 33 ~~~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~~~~~GFaa~lt~---~e-~~~L~~--~pgV~~V~~D 106 (119)
.+++|||.+++... -.+.+... ...+.+.+. .++++++++++ ++ +++|++ .|+|.+||||
T Consensus 30 ~~~~~IV~~k~~~~------~~~~~~~~-------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd 95 (671)
T 1r6v_A 30 TEGKILVGYNDRSE------VDKIVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPS 95 (671)
T ss_dssp CTTEEEEEESSHHH------HHHHHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECC
T ss_pred CCccEEEEECCCcC------HHHHHHhc-------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecC
Confidence 57999999997421 11222221 124566664 58999998865 33 456764 7999999999
Q ss_pred Cceecc
Q 033460 107 RTLQLH 112 (119)
Q Consensus 107 ~~~~lh 112 (119)
..+++.
T Consensus 96 ~~~~l~ 101 (671)
T 1r6v_A 96 YKRELI 101 (671)
T ss_dssp BCCEEC
T ss_pred eEEEec
Confidence 887765
No 11
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=63.36 E-value=2.4 Score=30.49 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=26.3
Q ss_pred eeeecccccccc----ccCCHHHHHHHhcCCCeE
Q 033460 72 LYSYKTAASGFS----AKLTPQQVDEISKQPGVL 101 (119)
Q Consensus 72 ~ysY~~~~~GFa----a~lt~~e~~~L~~~pgV~ 101 (119)
...|+.+|.||- |.++|+++++|.+.||+.
T Consensus 53 Re~fr~AF~~Fd~~~VA~~~e~~ve~Ll~d~~II 86 (183)
T 2ofk_A 53 RENYRACFHQFDPIRIAAMQEEDVERLLQNTGII 86 (183)
T ss_dssp HHHHHHHTGGGCHHHHHTCCHHHHHHHTTCTTSC
T ss_pred HHHHHHHHcCCCHHHHcCCCHHHHHHHhcCCcch
Confidence 446888999995 889999999999999975
No 12
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=63.23 E-value=2.6 Score=30.34 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=26.3
Q ss_pred eeeecccccccc----ccCCHHHHHHHhcCCCeE
Q 033460 72 LYSYKTAASGFS----AKLTPQQVDEISKQPGVL 101 (119)
Q Consensus 72 ~ysY~~~~~GFa----a~lt~~e~~~L~~~pgV~ 101 (119)
...|+.+|.||- |.++|+++++|.+.||+.
T Consensus 53 Re~fR~AF~~FD~~~VA~~~e~dve~Ll~d~gII 86 (186)
T 2jg6_A 53 KEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIV 86 (186)
T ss_dssp HHHHHHHTGGGCHHHHTTCCHHHHHHHTTCTTSC
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccch
Confidence 456888999995 899999999999999975
No 13
>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB; macrolide-specific pump, ABC-type transporter; 2.00A {Actinobacillus actinomycetemcomitans}
Probab=47.65 E-value=13 Score=25.64 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred cccCCHHHHHHHhcCCCeEEEEcC
Q 033460 83 SAKLTPQQVDEISKQPGVLQVVPS 106 (119)
Q Consensus 83 aa~lt~~e~~~L~~~pgV~~V~~D 106 (119)
...|+++++++|++.|+|..|.|-
T Consensus 32 ~~~lt~~d~~~l~~~p~V~~v~~~ 55 (226)
T 3ftj_A 32 IQNLKISDANTLSKQSYIQSVTPN 55 (226)
T ss_dssp SCCCBHHHHHHHHTSTTEEEEEEE
T ss_pred cCCCCHHHHHHHhcCCCceEEEEE
Confidence 357999999999999999999874
No 14
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=30.80 E-value=26 Score=20.23 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=16.6
Q ss_pred cccccccccCCHHHHHHHhc
Q 033460 77 TAASGFSAKLTPQQVDEISK 96 (119)
Q Consensus 77 ~~~~GFaa~lt~~e~~~L~~ 96 (119)
..+-+|...|+++|++.|..
T Consensus 53 ~~Mp~~~~~Lsd~ei~~l~~ 72 (78)
T 1gks_A 53 GAMPAYDGRADREDLVKAIE 72 (78)
T ss_dssp TTBCCCBTTBCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHH
Confidence 46788888999999998764
No 15
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=28.57 E-value=72 Score=18.94 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=15.7
Q ss_pred CCcch--HHHHHHHHHHHHHHHHHhhh
Q 033460 2 QGRSR--KNFLSSAVILWILIVEMAET 26 (119)
Q Consensus 2 ~~~~~--~~~~~~~~~~~~~~~~~~~~ 26 (119)
||-.| -.|+.+|++++++++-.-++
T Consensus 24 WGTtplMgv~m~Lf~vFl~iiLeIYNs 50 (65)
T 3arc_H 24 WGTTPLMAVFMGLFLVFLLIILEIYNS 50 (65)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHhCc
Confidence 45554 56777777776666665444
No 16
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=26.32 E-value=22 Score=20.46 Aligned_cols=21 Identities=5% Similarity=0.300 Sum_probs=17.1
Q ss_pred ccccccccccCCHHHHHHHhc
Q 033460 76 KTAASGFSAKLTPQQVDEISK 96 (119)
Q Consensus 76 ~~~~~GFaa~lt~~e~~~L~~ 96 (119)
...+.+|+..|+++|++.|..
T Consensus 54 ~~~Mp~~~~~Ls~~ei~~l~~ 74 (79)
T 1c53_A 54 KAVMTNLVKRYSDEEMKAMAD 74 (79)
T ss_pred ccchHHHHhhCCHHHHHHHHH
Confidence 356788988999999998764
No 17
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=24.64 E-value=44 Score=19.62 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=17.4
Q ss_pred eccccccccccCCHHHHHHHhc
Q 033460 75 YKTAASGFSAKLTPQQVDEISK 96 (119)
Q Consensus 75 Y~~~~~GFaa~lt~~e~~~L~~ 96 (119)
|...+-.|...|+++|++.|..
T Consensus 72 ~~~~Mp~~~~~ls~~ei~~l~~ 93 (99)
T 1w2l_A 72 YPNVMPASYASLSEREVAALIE 93 (99)
T ss_dssp SCSCCCGGGGGCCHHHHHHHHH
T ss_pred ccccCccccccCCHHHHHHHHH
Confidence 4456778888999999988753
No 18
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=23.49 E-value=70 Score=18.33 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=17.1
Q ss_pred HHHHHHhcCCCeEEEEcCCceecc
Q 033460 89 QQVDEISKQPGVLQVVPSRTLQLH 112 (119)
Q Consensus 89 ~e~~~L~~~pgV~~V~~D~~~~lh 112 (119)
+-+++|++.|+|..|..-..++-|
T Consensus 61 ~l~~~L~~~~~V~~v~~~~~~~~~ 84 (88)
T 2ko1_A 61 TLMDKLRKVQGVFTVERLSNLEHH 84 (88)
T ss_dssp HHHHHHTTCTTEEEEEEECSCCCC
T ss_pred HHHHHHhcCCCceEEEEecccccc
Confidence 345788999999998765554433
No 19
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=22.92 E-value=55 Score=18.20 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.7
Q ss_pred cccCCHHHHHHHhcCCC
Q 033460 83 SAKLTPQQVDEISKQPG 99 (119)
Q Consensus 83 aa~lt~~e~~~L~~~pg 99 (119)
++++|.+|+++|..-|.
T Consensus 30 ~G~iTQ~E~D~I~~ypw 46 (51)
T 2xf7_A 30 AGDLTQEEADKIMSYPW 46 (51)
T ss_dssp HTSSCHHHHHHHHTSCT
T ss_pred cCcccHHHHHHHHhCcc
Confidence 57899999999988775
No 20
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=22.19 E-value=46 Score=19.35 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=16.5
Q ss_pred cccccccccCCHHHHHHHhc
Q 033460 77 TAASGFSAKLTPQQVDEISK 96 (119)
Q Consensus 77 ~~~~GFaa~lt~~e~~~L~~ 96 (119)
..+-+|...|+++|++.|..
T Consensus 61 ~~Mp~~~~~ls~~ei~~l~~ 80 (91)
T 1ls9_A 61 GAMPAWADRLDEDDIEAVSN 80 (91)
T ss_dssp TTBCCCTTTSCHHHHHHHHH
T ss_pred CCCcchhhhCCHHHHHHHHH
Confidence 46788888999999998754
No 21
>2gj2_A WSV230, VP9; ferredoxin fold, metal binding protein; 2.35A {Shrimp white spot syndrome virus} PDB: 2gji_A 2zug_A
Probab=21.60 E-value=57 Score=20.34 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=12.4
Q ss_pred CCCCCeEEEEeCCCCC
Q 033460 31 QAESAVQIVYTERPQD 46 (119)
Q Consensus 31 ~~~~~~YIV~m~~~~~ 46 (119)
+=..++|||.++++..
T Consensus 40 El~d~~~iV~LK~~e~ 55 (85)
T 2gj2_A 40 DLDDRVYMVCLKQGST 55 (85)
T ss_dssp SSCTTEEEEEECTTCC
T ss_pred hcccceEEEEEccCCE
Confidence 3357999999998753
No 22
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=21.09 E-value=48 Score=18.78 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=16.6
Q ss_pred cccccccccCCHHHHHHHhc
Q 033460 77 TAASGFSAKLTPQQVDEISK 96 (119)
Q Consensus 77 ~~~~GFaa~lt~~e~~~L~~ 96 (119)
..+-+|...|+++|++.|..
T Consensus 57 ~~Mp~~~~~ls~~ei~~l~~ 76 (86)
T 3ph2_B 57 AGMPAFKGRLTDDQIAAVAA 76 (86)
T ss_dssp TTBCCCTTTSCHHHHHHHHH
T ss_pred CCCCCcccCCCHHHHHHHHH
Confidence 46778888999999998764
No 23
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=20.36 E-value=53 Score=18.86 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=16.4
Q ss_pred cccccccccCCHHHHHHHhc
Q 033460 77 TAASGFSAKLTPQQVDEISK 96 (119)
Q Consensus 77 ~~~~GFaa~lt~~e~~~L~~ 96 (119)
..+-+|...|+++|++.|..
T Consensus 59 ~~Mp~~~~~ls~~ei~~l~~ 78 (89)
T 1c6r_A 59 GAMPAWSGTLDDDEIAAVAA 78 (89)
T ss_dssp TTBCCCTTTSCHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHH
Confidence 46788888999999988754
No 24
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=20.30 E-value=53 Score=18.95 Aligned_cols=20 Identities=10% Similarity=0.441 Sum_probs=16.4
Q ss_pred cccccccccCCHHHHHHHhc
Q 033460 77 TAASGFSAKLTPQQVDEISK 96 (119)
Q Consensus 77 ~~~~GFaa~lt~~e~~~L~~ 96 (119)
..+-+|...|+++|++.|..
T Consensus 58 ~~Mp~~~~~ls~~ei~~l~~ 77 (90)
T 1cyi_A 58 GAMPAWADRLSEEEIQAVAE 77 (90)
T ss_dssp TTBCCCTTTSCHHHHHHHHH
T ss_pred CCCCcccccCCHHHHHHHHH
Confidence 46778888999999988754
No 25
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=20.18 E-value=54 Score=18.73 Aligned_cols=20 Identities=15% Similarity=0.491 Sum_probs=16.6
Q ss_pred cccccccccCCHHHHHHHhc
Q 033460 77 TAASGFSAKLTPQQVDEISK 96 (119)
Q Consensus 77 ~~~~GFaa~lt~~e~~~L~~ 96 (119)
..+-+|...|+++|++.|..
T Consensus 58 ~~Mp~~~~~ls~~ei~~l~~ 77 (88)
T 3dmi_A 58 NAMPAFGGRLSDEEIANVAA 77 (88)
T ss_dssp TTBCCCTTTSCHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHH
Confidence 46788888999999998754
Done!