Query 033463
Match_columns 118
No_of_seqs 120 out of 1496
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:34:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.3 3.6E-12 7.9E-17 98.1 7.6 102 3-105 483-589 (968)
2 PLN00113 leucine-rich repeat r 99.3 5.9E-12 1.3E-16 96.9 6.9 99 6-105 151-254 (968)
3 PF13855 LRR_8: Leucine rich r 99.2 1.5E-11 3.3E-16 65.0 3.1 61 38-99 1-61 (61)
4 PLN03150 hypothetical protein; 99.2 2.3E-10 4.9E-15 85.0 8.6 74 31-105 435-508 (623)
5 PLN03150 hypothetical protein; 99.1 1.8E-10 3.8E-15 85.6 7.6 97 4-101 427-529 (623)
6 PF14580 LRR_9: Leucine-rich r 99.0 7.9E-10 1.7E-14 70.0 4.2 85 17-102 40-128 (175)
7 KOG0617 Ras suppressor protein 98.9 4.3E-11 9.2E-16 75.5 -2.4 96 11-108 48-148 (264)
8 PF13855 LRR_8: Leucine rich r 98.9 4.1E-09 8.9E-14 55.6 4.3 56 19-74 1-61 (61)
9 KOG4194 Membrane glycoprotein 98.9 5.1E-10 1.1E-14 81.5 0.6 104 5-109 327-438 (873)
10 KOG4194 Membrane glycoprotein 98.8 8.7E-10 1.9E-14 80.3 1.0 101 4-105 206-311 (873)
11 PF14580 LRR_9: Leucine-rich r 98.7 1.8E-08 4E-13 63.8 4.0 85 16-103 16-104 (175)
12 KOG0472 Leucine-rich repeat pr 98.7 1.2E-09 2.5E-14 76.6 -1.9 97 9-107 196-295 (565)
13 KOG0617 Ras suppressor protein 98.7 1.1E-09 2.4E-14 69.2 -2.0 95 9-105 69-168 (264)
14 KOG0472 Leucine-rich repeat pr 98.6 8.8E-09 1.9E-13 72.3 0.0 98 5-105 421-545 (565)
15 PF12799 LRR_4: Leucine Rich r 98.5 1.2E-07 2.7E-12 46.7 3.2 37 63-101 2-38 (44)
16 KOG0444 Cytoskeletal regulator 98.5 1.2E-08 2.6E-13 75.4 -1.8 73 29-104 213-285 (1255)
17 KOG0444 Cytoskeletal regulator 98.4 5.2E-08 1.1E-12 72.2 0.8 91 8-100 92-186 (1255)
18 PF12799 LRR_4: Leucine Rich r 98.4 6.3E-07 1.4E-11 44.2 3.6 38 38-76 1-38 (44)
19 KOG0618 Serine/threonine phosp 98.4 5.8E-08 1.3E-12 73.8 -0.3 101 12-116 376-484 (1081)
20 KOG4237 Extracellular matrix p 98.4 1.1E-07 2.5E-12 66.6 0.9 87 13-100 268-359 (498)
21 KOG0618 Serine/threonine phosp 98.3 3.1E-08 6.7E-13 75.2 -3.3 97 18-116 358-460 (1081)
22 PLN03210 Resistant to P. syrin 98.3 6.9E-06 1.5E-10 65.2 8.9 83 13-97 628-714 (1153)
23 KOG4237 Extracellular matrix p 98.2 6.8E-08 1.5E-12 67.6 -3.3 83 22-105 70-158 (498)
24 KOG1259 Nischarin, modulator o 98.2 2.5E-07 5.4E-12 63.3 -1.1 47 58-104 370-416 (490)
25 cd00116 LRR_RI Leucine-rich re 98.1 5.5E-06 1.2E-10 56.5 4.0 64 37-100 164-234 (319)
26 cd00116 LRR_RI Leucine-rich re 98.0 2.9E-06 6.3E-11 57.9 2.5 64 38-101 137-207 (319)
27 KOG0531 Protein phosphatase 1, 98.0 1.7E-06 3.7E-11 61.6 1.1 86 14-104 90-179 (414)
28 PRK15370 E3 ubiquitin-protein 98.0 1.7E-05 3.6E-10 60.5 5.7 37 63-103 263-299 (754)
29 KOG1644 U2-associated snRNP A' 98.0 2.3E-05 5E-10 50.7 5.4 91 20-115 43-136 (233)
30 PLN03210 Resistant to P. syrin 98.0 6.2E-05 1.3E-09 60.0 8.7 89 10-104 793-887 (1153)
31 KOG1259 Nischarin, modulator o 97.9 1.5E-06 3.2E-11 59.6 -0.5 88 14-103 279-390 (490)
32 PRK15370 E3 ubiquitin-protein 97.9 7.8E-05 1.7E-09 57.0 8.4 91 19-116 199-291 (754)
33 PRK15387 E3 ubiquitin-protein 97.9 8.7E-05 1.9E-09 56.8 8.1 32 20-51 223-255 (788)
34 PRK15387 E3 ubiquitin-protein 97.9 2.3E-05 5E-10 59.9 4.9 62 38-105 402-463 (788)
35 KOG3207 Beta-tubulin folding c 97.8 5.3E-06 1.1E-10 58.9 -0.2 86 13-98 140-233 (505)
36 KOG2739 Leucine-rich acidic nu 97.8 2.3E-05 5.1E-10 52.2 2.8 91 11-101 35-130 (260)
37 KOG0532 Leucine-rich repeat (L 97.7 4.8E-06 1E-10 61.0 -1.5 93 9-105 156-252 (722)
38 KOG1859 Leucine-rich repeat pr 97.6 3.5E-06 7.6E-11 63.4 -2.6 85 13-102 181-269 (1096)
39 COG4886 Leucine-rich repeat (L 97.6 5.4E-05 1.2E-09 53.5 2.6 63 39-104 141-203 (394)
40 KOG0532 Leucine-rich repeat (L 97.5 4.9E-06 1.1E-10 61.0 -3.1 65 9-75 111-179 (722)
41 KOG4579 Leucine-rich repeat (L 97.5 1.5E-05 3.3E-10 48.8 -1.1 81 20-103 54-139 (177)
42 COG4886 Leucine-rich repeat (L 97.4 6.7E-05 1.4E-09 53.0 1.5 90 10-102 130-224 (394)
43 KOG4658 Apoptotic ATPase [Sign 97.4 8.3E-05 1.8E-09 57.8 2.0 64 34-99 567-630 (889)
44 KOG4579 Leucine-rich repeat (L 97.4 3E-05 6.4E-10 47.6 -0.4 68 35-105 50-118 (177)
45 KOG0531 Protein phosphatase 1, 97.2 0.00011 2.5E-09 52.4 1.1 84 18-105 71-158 (414)
46 KOG4658 Apoptotic ATPase [Sign 97.1 0.00019 4.2E-09 55.8 1.4 86 11-98 563-653 (889)
47 KOG3665 ZYG-1-like serine/thre 97.1 0.00065 1.4E-08 51.7 3.6 81 17-99 146-232 (699)
48 KOG3207 Beta-tubulin folding c 97.0 0.00019 4.1E-09 51.3 0.4 13 63-75 247-259 (505)
49 KOG3665 ZYG-1-like serine/thre 96.8 0.00069 1.5E-08 51.6 1.9 95 19-116 122-228 (699)
50 KOG2123 Uncharacterized conser 96.8 4.6E-05 1E-09 51.8 -3.9 70 32-103 35-104 (388)
51 KOG1909 Ran GTPase-activating 96.8 0.0012 2.5E-08 46.1 2.7 87 15-101 181-284 (382)
52 KOG2982 Uncharacterized conser 96.5 0.0012 2.7E-08 45.5 1.3 62 36-97 95-156 (418)
53 KOG1644 U2-associated snRNP A' 96.4 0.0054 1.2E-07 40.0 3.7 78 22-102 22-103 (233)
54 PF00560 LRR_1: Leucine Rich R 96.3 0.0024 5.2E-08 26.4 1.3 18 40-58 2-19 (22)
55 PF13504 LRR_7: Leucine rich r 96.3 0.0028 6E-08 24.6 1.3 14 88-101 2-15 (17)
56 KOG1909 Ran GTPase-activating 95.9 0.0031 6.6E-08 44.1 0.7 88 13-100 207-311 (382)
57 KOG1859 Leucine-rich repeat pr 95.7 0.00032 6.9E-09 53.4 -5.0 88 14-103 204-295 (1096)
58 KOG2982 Uncharacterized conser 95.4 0.015 3.4E-07 40.3 2.6 38 38-75 71-110 (418)
59 PF13306 LRR_5: Leucine rich r 95.3 0.14 2.9E-06 30.2 6.3 81 14-97 7-91 (129)
60 KOG2739 Leucine-rich acidic nu 95.1 0.02 4.4E-07 38.5 2.5 64 35-101 40-105 (260)
61 smart00370 LRR Leucine-rich re 95.1 0.023 5.1E-07 24.2 1.9 19 87-105 2-20 (26)
62 smart00369 LRR_TYP Leucine-ric 95.1 0.023 5.1E-07 24.2 1.9 19 87-105 2-20 (26)
63 KOG2123 Uncharacterized conser 95.0 0.0011 2.4E-08 45.3 -3.5 79 15-93 37-123 (388)
64 PRK15386 type III secretion pr 94.9 0.16 3.5E-06 36.8 6.7 16 88-103 157-172 (426)
65 COG5238 RNA1 Ran GTPase-activa 94.4 0.086 1.9E-06 36.3 4.2 72 32-104 86-174 (388)
66 PF13306 LRR_5: Leucine rich r 92.4 0.49 1.1E-05 27.7 4.9 80 13-96 29-112 (129)
67 smart00365 LRR_SD22 Leucine-ri 91.3 0.22 4.7E-06 21.4 1.8 16 87-102 2-17 (26)
68 smart00364 LRR_BAC Leucine-ric 90.6 0.21 4.7E-06 21.5 1.4 18 87-104 2-19 (26)
69 COG5238 RNA1 Ran GTPase-activa 89.8 0.39 8.4E-06 33.2 2.9 89 13-101 24-134 (388)
70 PF13516 LRR_6: Leucine Rich r 89.8 0.087 1.9E-06 21.9 -0.1 15 38-52 2-16 (24)
71 KOG2120 SCF ubiquitin ligase, 89.8 0.16 3.6E-06 35.4 1.1 61 36-96 311-372 (419)
72 PRK15386 type III secretion pr 89.5 0.9 1.9E-05 33.1 4.6 54 16-72 49-104 (426)
73 smart00368 LRR_RI Leucine rich 88.7 0.48 1E-05 20.5 1.9 15 87-101 2-16 (28)
74 KOG2120 SCF ubiquitin ligase, 88.3 0.027 5.9E-07 39.1 -3.4 80 21-100 187-273 (419)
75 KOG3864 Uncharacterized conser 87.2 0.14 3.1E-06 33.5 -0.5 65 32-96 119-185 (221)
76 KOG3763 mRNA export factor TAP 85.7 0.49 1.1E-05 35.4 1.5 66 36-102 216-285 (585)
77 KOG1947 Leucine rich repeat pr 83.8 0.88 1.9E-05 32.7 2.1 84 15-98 210-306 (482)
78 KOG0473 Leucine-rich repeat pr 82.6 0.018 3.9E-07 38.7 -6.2 82 15-99 38-123 (326)
79 KOG3864 Uncharacterized conser 82.6 0.28 6E-06 32.2 -0.7 58 14-71 120-185 (221)
80 TIGR00864 PCC polycystin catio 77.0 2.4 5.2E-05 37.6 2.7 32 44-75 1-32 (2740)
81 KOG0473 Leucine-rich repeat pr 76.7 0.031 6.7E-07 37.6 -6.5 72 33-107 37-108 (326)
82 smart00367 LRR_CC Leucine-rich 61.5 7.3 0.00016 16.2 1.4 12 62-73 2-13 (26)
83 TIGR00864 PCC polycystin catio 57.8 8.5 0.00018 34.6 2.2 20 32-51 13-32 (2740)
84 KOG3763 mRNA export factor TAP 44.9 15 0.00032 28.0 1.6 62 17-78 216-286 (585)
85 smart00446 LRRcap occurring C- 21.6 39 0.00084 14.4 0.3 15 82-96 8-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.34 E-value=3.6e-12 Score=98.08 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=80.0
Q ss_pred CceeecCCCccccccCccccEEEeccC-----chhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC
Q 033463 3 DKFVVSKGTTNTIKKCQLLQISWILCH-----LVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 77 (118)
Q Consensus 3 ~~~~~~~~~p~~~~~l~~L~~L~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~ 77 (118)
+.+.+++..|..+..+++|+.|+++++ .|+.+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence 344555667777888888888888744 366777888888888888888888888888888888888888888877
Q ss_pred CChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 78 FDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.|. .+.++++|+.+++++|++++..|.
T Consensus 563 ~p~-~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 563 IPK-NLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCh-hHhcCcccCEEeccCCcceeeCCC
Confidence 776 377788888888888888876664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.30 E-value=5.9e-12 Score=96.93 Aligned_cols=99 Identities=23% Similarity=0.270 Sum_probs=58.6
Q ss_pred eecCCCccccccCccccEEEeccC-----chhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCCh
Q 033463 6 VVSKGTTNTIKKCQLLQISWILCH-----LVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV 80 (118)
Q Consensus 6 ~~~~~~p~~~~~l~~L~~L~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~ 80 (118)
.+.+..|..+..+++|++|+++++ .|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|.
T Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 334455666666666666666533 244555666666666666666655566666666666666666666655554
Q ss_pred hhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 81 REFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 81 ~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.++++++|+.|++++|.+++..|.
T Consensus 231 -~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 231 -EIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred -hHhcCCCCCEEECcCceeccccCh
Confidence 255666666666666666554443
No 3
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.20 E-value=1.5e-11 Score=64.99 Aligned_cols=61 Identities=30% Similarity=0.396 Sum_probs=52.8
Q ss_pred CCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCC
Q 033463 38 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEI 99 (118)
Q Consensus 38 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l 99 (118)
|+|+.|++++|.+....+..|..+++|+++++++|.+....+ ..|.++++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 578999999999997766788999999999999999985444 4699999999999999975
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.15 E-value=2.3e-10 Score=84.98 Aligned_cols=74 Identities=26% Similarity=0.382 Sum_probs=43.1
Q ss_pred hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 31 VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 31 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
|+.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|. .++++++|+.|++++|.++|..|.
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEECcCCcccccCCh
Confidence 44555556666666666666555555555666666666666666555554 255566666666666666555543
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=1.8e-10 Score=85.56 Aligned_cols=97 Identities=21% Similarity=0.154 Sum_probs=82.3
Q ss_pred ceeecCCCccccccCccccEEEeccC-----chhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCH-----LVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
.+.+++.+|..+..+++|+.|+++++ .|+.++.+++|+.|+++.|.+++..|..+..+++|+.|++++|.+.+.+
T Consensus 427 ~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i 506 (623)
T PLN03150 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506 (623)
T ss_pred CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC
Confidence 44556788999999999999999844 4668899999999999999999999999999999999999999999988
Q ss_pred ChhhhcC-CCCCCEEEcCCCCCCC
Q 033463 79 DVREFDS-FNNLEVLDLSWNEIDN 101 (118)
Q Consensus 79 ~~~~~~~-l~~L~~l~ls~N~l~~ 101 (118)
|.. ++. ..++..+++.+|....
T Consensus 507 P~~-l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 507 PAA-LGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred ChH-HhhccccCceEEecCCcccc
Confidence 864 554 3467789999886444
No 6
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=7.9e-10 Score=70.05 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=34.1
Q ss_pred cCccccEEEeccCch---hhccCCCCCCEEecCCCcCCccccccc-cCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEE
Q 033463 17 KCQLLQISWILCHLV---YYFTGLSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL 92 (118)
Q Consensus 17 ~l~~L~~L~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l 92 (118)
.+.+|+.|+++.|.. +.+..++.|+.|+++.|.++.. .+.+ ..+++|+.|++++|++...-....+..+++|+.|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 355677777776553 3444557777777777777643 2223 3467777777777777654444456667777777
Q ss_pred EcCCCCCCCC
Q 033463 93 DLSWNEIDNL 102 (118)
Q Consensus 93 ~ls~N~l~~~ 102 (118)
++.+|+++..
T Consensus 119 ~L~~NPv~~~ 128 (175)
T PF14580_consen 119 SLEGNPVCEK 128 (175)
T ss_dssp E-TT-GGGGS
T ss_pred eccCCcccch
Confidence 7777776643
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.93 E-value=4.3e-11 Score=75.48 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=70.3
Q ss_pred CccccccCccccEEEeccC----chhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCC-CCChhhhcC
Q 033463 11 TTNTIKKCQLLQISWILCH----LVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG-TFDVREFDS 85 (118)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~-~~~~~~~~~ 85 (118)
.|+.++.+.+|+.|++..+ .|..+..++.|+.|.++.|++. ..|..|+.++.|+.|+++.|.+.. ..|+ .|..
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpg-nff~ 125 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPG-NFFY 125 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCc-chhH
Confidence 5677788888888888733 3667777888888888888777 557778888888888888877764 3444 3666
Q ss_pred CCCCCEEEcCCCCCCCCCcCCCC
Q 033463 86 FNNLEVLDLSWNEIDNLVVPQGK 108 (118)
Q Consensus 86 l~~L~~l~ls~N~l~~~~~~~~~ 108 (118)
++.|+.+.++.|.++-.+++.++
T Consensus 126 m~tlralyl~dndfe~lp~dvg~ 148 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVGK 148 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhhh
Confidence 77777777777777777776543
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=4.1e-09 Score=55.56 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=48.8
Q ss_pred ccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCC
Q 033463 19 QLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGF 74 (118)
Q Consensus 19 ~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l 74 (118)
++|+.|+++.+. +..|..+++|++|++++|.+....+..|..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468889998654 35778899999999999999988788899999999999999975
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.86 E-value=5.1e-10 Score=81.50 Aligned_cols=104 Identities=24% Similarity=0.284 Sum_probs=74.5
Q ss_pred eeecCCCccccccCccccEEEeccCchhh-----ccCCCCCCEEecCCCcCCccccc---cccCCCCCcEEecCCCCCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHLVYY-----FTGLSKLKSLGLAGIKLNRSILS---SLTVFSSLRELHLRDTGFKG 76 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~l~ls~n~l~~ 76 (118)
+.+..-.+..+..+..|+.|.++.|..+. |..+++|+.|++..|.+++.+.. .|..+++|+.|.+.+|+++
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk- 405 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK- 405 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-
Confidence 34444445555556666666666555443 44678889999999988874433 4667899999999999998
Q ss_pred CCChhhhcCCCCCCEEEcCCCCCCCCCcCCCCC
Q 033463 77 TFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQ 109 (118)
Q Consensus 77 ~~~~~~~~~l~~L~~l~ls~N~l~~~~~~~~~~ 109 (118)
.++..+|.++.+|++|||.+|.+.++.+.....
T Consensus 406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred ecchhhhccCcccceecCCCCcceeeccccccc
Confidence 455446999999999999999998888775543
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.83 E-value=8.7e-10 Score=80.31 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=58.3
Q ss_pred ceeecCCCccccccCccccEEEeccCchh-----hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHLVY-----YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
++.++--.+..|+.+++|+.|++..|... .|.++++|+.+.++.|.+.......|..+..+++++++.|++...-
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 34444555566777888888888755422 2445566666666666665554555555556666666666665322
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
. +++.+++.|++|++|+|.|+.+..+
T Consensus 286 ~-g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 286 E-GWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred c-ccccccchhhhhccchhhhheeecc
Confidence 2 2355556666666666655555444
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=1.8e-08 Score=63.83 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=29.1
Q ss_pred ccCccccEEEeccCchhhc---c-CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCE
Q 033463 16 KKCQLLQISWILCHLVYYF---T-GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 91 (118)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~---~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~ 91 (118)
.+...+++|+++++..+.+ + .+.+++.|+++.|.+... +.+..++.|+.|++++|.++...+ .....+++|+.
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT--E
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCcCCE
Confidence 3444678999998775544 4 357899999999999853 357788999999999999995433 21246899999
Q ss_pred EEcCCCCCCCCC
Q 033463 92 LDLSWNEIDNLV 103 (118)
Q Consensus 92 l~ls~N~l~~~~ 103 (118)
|++++|++....
T Consensus 93 L~L~~N~I~~l~ 104 (175)
T PF14580_consen 93 LYLSNNKISDLN 104 (175)
T ss_dssp EE-TTS---SCC
T ss_pred EECcCCcCCChH
Confidence 999999998753
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.69 E-value=1.2e-09 Score=76.62 Aligned_cols=97 Identities=26% Similarity=0.275 Sum_probs=75.4
Q ss_pred CCCccccccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcC
Q 033463 9 KGTTNTIKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDS 85 (118)
Q Consensus 9 ~~~p~~~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~ 85 (118)
..+|++++.+..|..||+..+. .+.|+++..|..+.++.|.++-...+....++++..||+.+|+++ ..|.+ .--
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde-~cl 273 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE-ICL 273 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH-HHH
Confidence 4578888888888888888554 347778888888888888887443334457899999999999999 55543 666
Q ss_pred CCCCCEEEcCCCCCCCCCcCCC
Q 033463 86 FNNLEVLDLSWNEIDNLVVPQG 107 (118)
Q Consensus 86 l~~L~~l~ls~N~l~~~~~~~~ 107 (118)
+.+|..+|+|+|.+++.+++.+
T Consensus 274 LrsL~rLDlSNN~is~Lp~sLg 295 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISSLPYSLG 295 (565)
T ss_pred hhhhhhhcccCCccccCCcccc
Confidence 8889999999999999988754
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.69 E-value=1.1e-09 Score=69.16 Aligned_cols=95 Identities=24% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCccccccCccccEEEec----cCchhhccCCCCCCEEecCCCcCCc-cccccccCCCCCcEEecCCCCCCCCCChhhh
Q 033463 9 KGTTNTIKKCQLLQISWIL----CHLVYYFTGLSKLKSLGLAGIKLNR-SILSSLTVFSSLRELHLRDTGFKGTFDVREF 83 (118)
Q Consensus 9 ~~~p~~~~~l~~L~~L~l~----~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~ 83 (118)
..+|..+..++.|+.|++. ...|..|+.+|-|+.||+..|++.. ..|..|.-+..|+.|++++|.+. ..|. ..
T Consensus 69 e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~-dv 146 (264)
T KOG0617|consen 69 EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPP-DV 146 (264)
T ss_pred hhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCCh-hh
Confidence 3478888888888888887 3347888888888888888887753 55666666677777777777777 3333 36
Q ss_pred cCCCCCCEEEcCCCCCCCCCcC
Q 033463 84 DSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 84 ~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
+++++|+.+.+..|.+-+.+..
T Consensus 147 g~lt~lqil~lrdndll~lpke 168 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLLSLPKE 168 (264)
T ss_pred hhhcceeEEeeccCchhhCcHH
Confidence 7777777777777776666544
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.59 E-value=8.8e-09 Score=72.31 Aligned_cols=98 Identities=17% Similarity=0.092 Sum_probs=70.3
Q ss_pred eeecCCCccccccCccccEEEeccC----chhhccCCCCCCEEecCCCcCCc-----------------------ccccc
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCH----LVYYFTGLSKLKSLGLAGIKLNR-----------------------SILSS 57 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~----~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~ 57 (118)
+++-+..|..++.++++..|+++.+ .|..++.+..|+.++++.|+|.. ..|+.
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHH
Confidence 3344557777888888888888844 37777777778888888877652 12222
Q ss_pred ccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 58 LTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 58 ~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
+.++.+|..|++.+|.+...+| .++++++++++++++|+|. .|+.
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp--~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPP--ILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred hhhhhhcceeccCCCchhhCCh--hhccccceeEEEecCCccC-CCHH
Confidence 5567788888888888885444 4888888888888888887 5544
No 15
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.53 E-value=1.2e-07 Score=46.69 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=16.8
Q ss_pred CCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCC
Q 033463 63 SLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 63 ~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~ 101 (118)
+|++|++++|++.. ++. .+.++++|+.+++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~-l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-HGG-HGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-cCc-hHhCCCCCCEEEecCCCCCC
Confidence 34455555555552 221 24555555555555555543
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.48 E-value=1.2e-08 Score=75.42 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=42.6
Q ss_pred CchhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 29 HLVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 29 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
|.|..+..+.+|+.++++.|++. .+|+++.++++|+.|++|+|+++..-. ..+...+++.|++|.|+++..|.
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~--~~~~W~~lEtLNlSrNQLt~LP~ 285 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM--TEGEWENLETLNLSRNQLTVLPD 285 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec--cHHHHhhhhhhccccchhccchH
Confidence 34556666666666666666666 446666666666666666666662221 13333455666666666555443
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.45 E-value=5.2e-08 Score=72.17 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=63.9
Q ss_pred cCCCccccccCccccEEEeccC----chhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhh
Q 033463 8 SKGTTNTIKKCQLLQISWILCH----LVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREF 83 (118)
Q Consensus 8 ~~~~p~~~~~l~~L~~L~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~ 83 (118)
.+++|.++..+..|+.|+++.| .|..+..-.++-.|+++.|++.....+-+.+++.|-.|++|+|++...+| ..
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP--Q~ 169 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP--QI 169 (1255)
T ss_pred cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH--HH
Confidence 3667888888888888888844 36666667777777888887774433445667777777888888774444 36
Q ss_pred cCCCCCCEEEcCCCCCC
Q 033463 84 DSFNNLEVLDLSWNEID 100 (118)
Q Consensus 84 ~~l~~L~~l~ls~N~l~ 100 (118)
..+..|++|+|++|.+.
T Consensus 170 RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred HHHhhhhhhhcCCChhh
Confidence 67777777777777654
No 18
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.38 E-value=6.3e-07 Score=44.15 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=31.6
Q ss_pred CCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCC
Q 033463 38 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG 76 (118)
Q Consensus 38 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~ 76 (118)
++|++|++++|.++. +|+.+..+++|+.+++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 478999999999995 56679999999999999999984
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.37 E-value=5.8e-08 Score=73.77 Aligned_cols=101 Identities=22% Similarity=0.360 Sum_probs=66.7
Q ss_pred ccccccCccccEEEeccCc----hh-hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCC
Q 033463 12 TNTIKKCQLLQISWILCHL----VY-YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSF 86 (118)
Q Consensus 12 p~~~~~l~~L~~L~l~~~~----~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l 86 (118)
-+.+..+++|+.|+++.|. |+ .+.+++.|+.|.+|+|.+. .+|....++..|+.|...+|++. .+| .+..+
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP--e~~~l 451 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP--ELAQL 451 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech--hhhhc
Confidence 3445667777777777543 32 3456677777777777776 44666777777777777777777 444 37778
Q ss_pred CCCCEEEcCCCCCCCCCcC---CCCCcceEEEe
Q 033463 87 NNLEVLDLSWNEIDNLVVP---QGKQLKCYLIT 116 (118)
Q Consensus 87 ~~L~~l~ls~N~l~~~~~~---~~~~l~~~~~~ 116 (118)
+.|+++|++.|+++..... .+..||.+++|
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCCCcccceeecc
Confidence 8888888888888764322 12556666554
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.36 E-value=1.1e-07 Score=66.56 Aligned_cols=87 Identities=23% Similarity=0.187 Sum_probs=61.4
Q ss_pred cccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCC
Q 033463 13 NTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFN 87 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~ 87 (118)
..|.++++|+.|++++|. +.+|.+...++.|.+..|.+.......|.++..|+.|++.+|+++-..|+ .|..+.
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-aF~~~~ 346 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-AFQTLF 346 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-cccccc
Confidence 346777777888777554 44566777777787877777765555677777777888888887744444 477777
Q ss_pred CCCEEEcCCCCCC
Q 033463 88 NLEVLDLSWNEID 100 (118)
Q Consensus 88 ~L~~l~ls~N~l~ 100 (118)
+|..+++-.|.+.
T Consensus 347 ~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 347 SLSTLNLLSNPFN 359 (498)
T ss_pred eeeeeehccCccc
Confidence 7777777777653
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.29 E-value=3.1e-08 Score=75.19 Aligned_cols=97 Identities=23% Similarity=0.195 Sum_probs=78.9
Q ss_pred CccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEE
Q 033463 18 CQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL 92 (118)
Q Consensus 18 l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l 92 (118)
++.|+.|++++|. .+.+.++++|+.|++++|++.......+.++..|++|++|+|+++ .+|. ....+..|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhhhHHH
Confidence 4456677777544 456778999999999999998666667889999999999999999 5554 58889999999
Q ss_pred EcCCCCCCCCCcC-CCCCcceEEEe
Q 033463 93 DLSWNEIDNLVVP-QGKQLKCYLIT 116 (118)
Q Consensus 93 ~ls~N~l~~~~~~-~~~~l~~~~~~ 116 (118)
...+|++...|-- ....+++.+++
T Consensus 436 ~ahsN~l~~fPe~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 436 RAHSNQLLSFPELAQLPQLKVLDLS 460 (1081)
T ss_pred hhcCCceeechhhhhcCcceEEecc
Confidence 9999999998842 45788888876
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=6.9e-06 Score=65.24 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=41.0
Q ss_pred cccccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCC
Q 033463 13 NTIKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNN 88 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~ 88 (118)
..+..+++|+.++++++. .+.+..+++|+.|++++|......|..+..+++|+.|++++|.....+|.. + ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCC
Confidence 334455555555555221 223444555666666555443445555555666666666655433333321 1 3455
Q ss_pred CCEEEcCCC
Q 033463 89 LEVLDLSWN 97 (118)
Q Consensus 89 L~~l~ls~N 97 (118)
|+.|++++|
T Consensus 706 L~~L~Lsgc 714 (1153)
T PLN03210 706 LYRLNLSGC 714 (1153)
T ss_pred CCEEeCCCC
Confidence 555555544
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.18 E-value=6.8e-08 Score=67.65 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=53.3
Q ss_pred cEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCC-CCCCCCCChhhhcCCCCCCEEEcC
Q 033463 22 QISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRD-TGFKGTFDVREFDSFNNLEVLDLS 95 (118)
Q Consensus 22 ~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~-n~l~~~~~~~~~~~l~~L~~l~ls 95 (118)
.++++..|. +..|+.+++|+.++++.|.++...|..|.+++++..|.+-+ |+|+ .+|...|+++.+++.|.+.
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC
Confidence 445555332 34566777777777777777777777777777766665555 7777 3444457777666666666
Q ss_pred CCCCCCCCcC
Q 033463 96 WNEIDNLVVP 105 (118)
Q Consensus 96 ~N~l~~~~~~ 105 (118)
-|.+......
T Consensus 149 an~i~Cir~~ 158 (498)
T KOG4237|consen 149 ANHINCIRQD 158 (498)
T ss_pred hhhhcchhHH
Confidence 6666655544
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.15 E-value=2.5e-07 Score=63.25 Aligned_cols=47 Identities=26% Similarity=0.261 Sum_probs=31.2
Q ss_pred ccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 58 LTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 58 ~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
+.++.+|..|++++|++........++++|.|+++.+.+|.+.+.+.
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 45566677777777777644444457777777777777777776653
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.06 E-value=5.5e-06 Score=56.52 Aligned_cols=64 Identities=27% Similarity=0.357 Sum_probs=27.1
Q ss_pred CCCCCEEecCCCcCCcc----ccccccCCCCCcEEecCCCCCCCCCCh---hhhcCCCCCCEEEcCCCCCC
Q 033463 37 LSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEID 100 (118)
Q Consensus 37 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~ls~n~l~~~~~~---~~~~~l~~L~~l~ls~N~l~ 100 (118)
+++++.|++++|.+.+. .+..+...++|+++++++|.+.+.... ..+..+++|+.|++++|.++
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 34455555555544421 111222334555555555554422110 11333445555555555554
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.05 E-value=2.9e-06 Score=57.86 Aligned_cols=64 Identities=28% Similarity=0.351 Sum_probs=33.7
Q ss_pred CCCCEEecCCCcCCcc----ccccccCCCCCcEEecCCCCCCCCCCh---hhhcCCCCCCEEEcCCCCCCC
Q 033463 38 SKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 38 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~ls~n~l~~~~~~---~~~~~l~~L~~l~ls~N~l~~ 101 (118)
++++.+++++|.+++. .+..+..+++|+.+++++|.+.+.... ..+...++|+.+++++|.+++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 5666666666666531 222334445666666666666532110 123344566667776666653
No 27
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=1.7e-06 Score=61.65 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=66.2
Q ss_pred ccccCccccEEEeccCchhh----ccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCC
Q 033463 14 TIKKCQLLQISWILCHLVYY----FTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNL 89 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L 89 (118)
.+..+++++.+++.++.+.. +..+++|+.|++++|.++.. ..+..++.|+.|++++|.+.. +. .+..+++|
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~~--~~~~l~~L 164 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-IS--GLESLKSL 164 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-cc--CCccchhh
Confidence 36678888888888776544 44478899999999998753 346667779999999999984 33 36668889
Q ss_pred CEEEcCCCCCCCCCc
Q 033463 90 EVLDLSWNEIDNLVV 104 (118)
Q Consensus 90 ~~l~ls~N~l~~~~~ 104 (118)
+.+++++|.+..+..
T Consensus 165 ~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIEN 179 (414)
T ss_pred hcccCCcchhhhhhh
Confidence 999999998888776
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.99 E-value=1.7e-05 Score=60.54 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=17.6
Q ss_pred CCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCC
Q 033463 63 SLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 63 ~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~ 103 (118)
+|+.|++++|++.. +|.. +. ++|+.|++++|++++.+
T Consensus 263 ~L~~L~Ls~N~L~~-LP~~-l~--~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 263 ALQSLDLFHNKISC-LPEN-LP--EELRYLSVYDNSIRTLP 299 (754)
T ss_pred CCCEEECcCCccCc-cccc-cC--CCCcEEECCCCccccCc
Confidence 45555555555552 2221 21 34555555555555443
No 29
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.98 E-value=2.3e-05 Score=50.75 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=64.6
Q ss_pred cccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCC
Q 033463 20 LLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 96 (118)
Q Consensus 20 ~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~ 96 (118)
+...++++.+. .+.+..++.|++|.++.|+++...|.--..++.|..|.+.+|.+...-..+.+..+|.|+.|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 34556776554 445667788889999999998665544445688999999999998554444677888899998888
Q ss_pred CCCCCCCcCCCCCcceEEE
Q 033463 97 NEIDNLVVPQGKQLKCYLI 115 (118)
Q Consensus 97 N~l~~~~~~~~~~l~~~~~ 115 (118)
|+.+.-. .-+||+|
T Consensus 123 Npv~~k~-----~YR~yvl 136 (233)
T KOG1644|consen 123 NPVEHKK-----NYRLYVL 136 (233)
T ss_pred Cchhccc-----CceeEEE
Confidence 8766433 4455544
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.96 E-value=6.2e-05 Score=59.99 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=52.2
Q ss_pred CCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhc
Q 033463 10 GTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD 84 (118)
Q Consensus 10 ~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~ 84 (118)
.+|..+..+++|+.|+++.+. |..+ .+++|+.|++++|..-...|. ...+++.|++++|.+. .+|. .+.
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~-si~ 866 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPW-WIE 866 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cChH-HHh
Confidence 356666667777777776321 2222 456666666666543222222 1256777777777776 3443 367
Q ss_pred CCCCCCEEEcCC-CCCCCCCc
Q 033463 85 SFNNLEVLDLSW-NEIDNLVV 104 (118)
Q Consensus 85 ~l~~L~~l~ls~-N~l~~~~~ 104 (118)
.+++|+.|++++ |++.+.+.
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCc
Confidence 777888888876 45555443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=1.5e-06 Score=59.61 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=53.9
Q ss_pred ccccCccccEEEeccCchhhccC----CCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC----------
Q 033463 14 TIKKCQLLQISWILCHLVYYFTG----LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD---------- 79 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~---------- 79 (118)
.+.....|+.+++++|.+..+.. .|.++.|+++.|.+.. ...+..+++|+.|++|+|.+.....
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 34455667777887776555442 4777777777777652 2346667777777777777652211
Q ss_pred ----------hhhhcCCCCCCEEEcCCCCCCCCC
Q 033463 80 ----------VREFDSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 80 ----------~~~~~~l~~L~~l~ls~N~l~~~~ 103 (118)
...++.+.+|..||+++|+++...
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhHH
Confidence 002444556677777777776554
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.93 E-value=7.8e-05 Score=56.98 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=63.7
Q ss_pred ccccEEEeccCchhhcc--CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCC
Q 033463 19 QLLQISWILCHLVYYFT--GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 96 (118)
Q Consensus 19 ~~L~~L~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~ 96 (118)
++++.|++++|....+. ..++|+.|++++|.++. +|..+ .++|+.|++++|.+. .+|.. +. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls~N~L~-~LP~~-l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTS-IPATL--PDTIQEMELSINRIT-ELPER-LP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCcccc-CChhh--hccccEEECcCCccC-cCChh-Hh--CCCCEEECcC
Confidence 46788888866533322 13589999999998874 35433 357899999999998 45543 33 5799999999
Q ss_pred CCCCCCCcCCCCCcceEEEe
Q 033463 97 NEIDNLVVPQGKQLKCYLIT 116 (118)
Q Consensus 97 N~l~~~~~~~~~~l~~~~~~ 116 (118)
|+++.++......|+.+.++
T Consensus 272 N~L~~LP~~l~~sL~~L~Ls 291 (754)
T PRK15370 272 NKISCLPENLPEELRYLSVY 291 (754)
T ss_pred CccCccccccCCCCcEEECC
Confidence 99998766555566666543
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.89 E-value=8.7e-05 Score=56.84 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=15.2
Q ss_pred cccEEEeccCchhhccC-CCCCCEEecCCCcCC
Q 033463 20 LLQISWILCHLVYYFTG-LSKLKSLGLAGIKLN 51 (118)
Q Consensus 20 ~L~~L~l~~~~~~~~~~-l~~L~~L~l~~n~l~ 51 (118)
+++.|++..|....+.. .++|+.|++++|.++
T Consensus 223 ~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 223 HITTLVIPDNNLTSLPALPPELRTLEVSGNQLT 255 (788)
T ss_pred CCCEEEccCCcCCCCCCCCCCCcEEEecCCccC
Confidence 45555555443332222 345555555555554
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.88 E-value=2.3e-05 Score=59.90 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=39.2
Q ss_pred CCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 38 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 38 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
++|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+|. .+.++++++.+++++|++++..+.
T Consensus 402 s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~-sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccCh-HHhhccCCCeEECCCCCCCchHHH
Confidence 345555555555543 2321 234566777777776 4454 377788899999999999876543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=5.3e-06 Score=58.95 Aligned_cols=86 Identities=26% Similarity=0.192 Sum_probs=59.8
Q ss_pred cccccCccccEEEeccCc-------hhhccCCCCCCEEecCCCcCCccccccc-cCCCCCcEEecCCCCCCCCCChhhhc
Q 033463 13 NTIKKCQLLQISWILCHL-------VYYFTGLSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFD 84 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~ls~n~l~~~~~~~~~~ 84 (118)
.....+++++.|+++++. ......+|+|+.|.++.|++.....+.. .-+++++.|.+++|.+++..-.....
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 356788899999999665 2345578999999999998864333322 24578888888888888544333455
Q ss_pred CCCCCCEEEcCCCC
Q 033463 85 SFNNLEVLDLSWNE 98 (118)
Q Consensus 85 ~l~~L~~l~ls~N~ 98 (118)
..|+++.|++..|.
T Consensus 220 ~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 220 TFPSLEVLYLEANE 233 (505)
T ss_pred hCCcHHHhhhhccc
Confidence 56677777777664
No 36
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.75 E-value=2.3e-05 Score=52.18 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=61.3
Q ss_pred CccccccCccccEEEeccC---chhhccCCCCCCEEecCCC--cCCccccccccCCCCCcEEecCCCCCCCCCChhhhcC
Q 033463 11 TTNTIKKCQLLQISWILCH---LVYYFTGLSKLKSLGLAGI--KLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDS 85 (118)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~~---~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~ 85 (118)
+......+..++.+.+... ....+..+++|+.|.++.| ++.+-++.....+++|+++++++|+++..-....+..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 3333444445555554422 2445667889999999999 6655555555667999999999999984322234677
Q ss_pred CCCCCEEEcCCCCCCC
Q 033463 86 FNNLEVLDLSWNEIDN 101 (118)
Q Consensus 86 l~~L~~l~ls~N~l~~ 101 (118)
+.+|..|++.+|..+.
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 7888888888887655
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.67 E-value=4.8e-06 Score=61.00 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=72.2
Q ss_pred CCCccccccCccccEEEeccC----chhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhc
Q 033463 9 KGTTNTIKKCQLLQISWILCH----LVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD 84 (118)
Q Consensus 9 ~~~p~~~~~l~~L~~L~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~ 84 (118)
+.+|+.++....|..++.+.| .|..++++.+|+.|.+..|++.. +|+++..++ |..||+|.|++. .+|. .|.
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis-~iPv-~fr 231 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKIS-YLPV-DFR 231 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCcee-ecch-hhh
Confidence 456777777777777777744 36777888888888888888884 466666544 788999999998 6666 499
Q ss_pred CCCCCCEEEcCCCCCCCCCcC
Q 033463 85 SFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 85 ~l~~L~~l~ls~N~l~~~~~~ 105 (118)
++..|++|-|.+|.+.+-+..
T Consensus 232 ~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred hhhhheeeeeccCCCCCChHH
Confidence 999999999999999876655
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=3.5e-06 Score=63.43 Aligned_cols=85 Identities=25% Similarity=0.273 Sum_probs=61.8
Q ss_pred cccccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccc-cccCCCCCcEEecCCCCCCCCCChhhhcCCCC
Q 033463 13 NTIKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILS-SLTVFSSLRELHLRDTGFKGTFDVREFDSFNN 88 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~ 88 (118)
.++.-++.++.|++++|. -+.+..+++|++||+++|++... |. ....+. |..|.+.+|.+. ... .+.++.+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~v-p~l~~~gc~-L~~L~lrnN~l~-tL~--gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHV-PQLSMVGCK-LQLLNLRNNALT-TLR--GIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccc-cccchhhhh-heeeeecccHHH-hhh--hHHhhhh
Confidence 345556678888888765 34566788999999999998743 32 122233 888899999888 443 4778899
Q ss_pred CCEEEcCCCCCCCC
Q 033463 89 LEVLDLSWNEIDNL 102 (118)
Q Consensus 89 L~~l~ls~N~l~~~ 102 (118)
|+.||+++|-+++.
T Consensus 256 L~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEH 269 (1096)
T ss_pred hhccchhHhhhhcc
Confidence 99999999988764
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.56 E-value=5.4e-05 Score=53.47 Aligned_cols=63 Identities=30% Similarity=0.382 Sum_probs=31.0
Q ss_pred CCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 39 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 39 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
+++.|++++|.+.. .|..++.++.|+.|++++|++....+ .....+.|+.+++++|+++..++
T Consensus 141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~--~~~~~~~L~~L~ls~N~i~~l~~ 203 (394)
T COG4886 141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPK--LLSNLSNLNNLDLSGNKISDLPP 203 (394)
T ss_pred hcccccccccchhh-hhhhhhccccccccccCCchhhhhhh--hhhhhhhhhheeccCCccccCch
Confidence 55555555555542 22344555555555555555553332 12234555555555555555544
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.53 E-value=4.9e-06 Score=60.97 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=35.6
Q ss_pred CCCccccccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCC
Q 033463 9 KGTTNTIKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFK 75 (118)
Q Consensus 9 ~~~p~~~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~ 75 (118)
..+|..++.+..|++++++.+. |..+..++ |+.|-++.|+++ ..|+.++....|..++.+.|.+.
T Consensus 111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh
Confidence 3467777777778887777332 33444444 455555555554 23444444445555555555544
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.46 E-value=1.5e-05 Score=48.83 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=45.6
Q ss_pred cccEEEeccCc----hhhcc-CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEc
Q 033463 20 LLQISWILCHL----VYYFT-GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 94 (118)
Q Consensus 20 ~L~~L~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~l 94 (118)
.|+.+++++|. |+.|. .++.++.++++.|.++ .+|.++..++.|+.++++.|++...+. .+..+.++..|+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~--vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPR--VIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchH--HHHHHHhHHHhcC
Confidence 34445555443 33332 2445666666666666 345556666666666666666664444 2333666666666
Q ss_pred CCCCCCCCC
Q 033463 95 SWNEIDNLV 103 (118)
Q Consensus 95 s~N~l~~~~ 103 (118)
.+|.+..++
T Consensus 131 ~~na~~eid 139 (177)
T KOG4579|consen 131 PENARAEID 139 (177)
T ss_pred CCCccccCc
Confidence 666655544
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.41 E-value=6.7e-05 Score=53.01 Aligned_cols=90 Identities=26% Similarity=0.192 Sum_probs=65.8
Q ss_pred CCccccccCc-cccEEEeccCch----hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhc
Q 033463 10 GTTNTIKKCQ-LLQISWILCHLV----YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD 84 (118)
Q Consensus 10 ~~p~~~~~l~-~L~~L~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~ 84 (118)
.+++....++ +|+.++++.+.. ..++.+++|+.|+++.|.+... |......+.|..+++++|++....+ ...
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~~l~~--~~~ 206 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKISDLPP--EIE 206 (394)
T ss_pred cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheeccCCccccCch--hhh
Confidence 3566666664 899999986653 3567899999999999999843 5444578899999999999995443 234
Q ss_pred CCCCCCEEEcCCCCCCCC
Q 033463 85 SFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 85 ~l~~L~~l~ls~N~l~~~ 102 (118)
....|+.+.+++|.+...
T Consensus 207 ~~~~L~~l~~~~N~~~~~ 224 (394)
T COG4886 207 LLSALEELDLSNNSIIEL 224 (394)
T ss_pred hhhhhhhhhhcCCcceec
Confidence 455688888888853333
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.40 E-value=8.3e-05 Score=57.75 Aligned_cols=64 Identities=28% Similarity=0.360 Sum_probs=42.9
Q ss_pred ccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCC
Q 033463 34 FTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEI 99 (118)
Q Consensus 34 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l 99 (118)
|..++.|+.||+++|.--+..|..++.+-+|++|++++..+. ..|. .++++..|.+|++..+.-
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccc
Confidence 556777777777766555566777777777777777777776 4444 366677777777766543
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=3e-05 Score=47.61 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=54.7
Q ss_pred cCCCCCCEEecCCCcCCccccccc-cCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 35 TGLSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 35 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.....|...++++|.+... |+.| ..++.++.+++++|.+. .+|.+ +..++.|+.++++.|.+...+.-
T Consensus 50 ~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred hCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhhhcccccCccccchHH
Confidence 3445677789999999865 5445 45678999999999999 56665 99999999999999999876643
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.24 E-value=0.00011 Score=52.45 Aligned_cols=84 Identities=20% Similarity=0.171 Sum_probs=63.2
Q ss_pred CccccEEEeccCchh----hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEE
Q 033463 18 CQLLQISWILCHLVY----YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLD 93 (118)
Q Consensus 18 l~~L~~L~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ 93 (118)
+..++.+++..+... .++.+.+++.+++..|.+... ...+..+++|++|++++|.|..... +..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc---hhhccchhhhe
Confidence 444555555544333 367789999999999999853 2226778999999999999995554 66788899999
Q ss_pred cCCCCCCCCCcC
Q 033463 94 LSWNEIDNLVVP 105 (118)
Q Consensus 94 ls~N~l~~~~~~ 105 (118)
+++|.++.+..-
T Consensus 147 l~~N~i~~~~~~ 158 (414)
T KOG0531|consen 147 LSGNLISDISGL 158 (414)
T ss_pred eccCcchhccCC
Confidence 999999877543
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.14 E-value=0.00019 Score=55.80 Aligned_cols=86 Identities=21% Similarity=0.196 Sum_probs=67.1
Q ss_pred CccccccCccccEEEecc-----CchhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcC
Q 033463 11 TTNTIKKCQLLQISWILC-----HLVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDS 85 (118)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~ 85 (118)
.+..|..++.|..|++++ ..|..++++-+|++|+++...+. ..|..++++..|.+|++..+.-...++. ....
T Consensus 563 s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~ 640 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLE 640 (889)
T ss_pred CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhh
Confidence 334477788999999983 34888888999999999998888 5688899999999999988776655554 3666
Q ss_pred CCCCCEEEcCCCC
Q 033463 86 FNNLEVLDLSWNE 98 (118)
Q Consensus 86 l~~L~~l~ls~N~ 98 (118)
+++|+++.+....
T Consensus 641 L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 641 LQSLRVLRLPRSA 653 (889)
T ss_pred cccccEEEeeccc
Confidence 8899999886554
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.06 E-value=0.00065 Score=51.70 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=39.1
Q ss_pred cCccccEEEeccCc------hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCC
Q 033463 17 KCQLLQISWILCHL------VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE 90 (118)
Q Consensus 17 ~l~~L~~L~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~ 90 (118)
.++.|+.|.+.+-. .....++|+|..||+++.+++.. ..++.+.+|+.|.+.+=.+........+.++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 34555555555211 22233556666666666655522 33444555555544443343222222344466666
Q ss_pred EEEcCCCCC
Q 033463 91 VLDLSWNEI 99 (118)
Q Consensus 91 ~l~ls~N~l 99 (118)
+||+|....
T Consensus 224 vLDIS~~~~ 232 (699)
T KOG3665|consen 224 VLDISRDKN 232 (699)
T ss_pred eeecccccc
Confidence 666665443
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00019 Score=51.30 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=5.6
Q ss_pred CCcEEecCCCCCC
Q 033463 63 SLRELHLRDTGFK 75 (118)
Q Consensus 63 ~L~~l~ls~n~l~ 75 (118)
.|+.|++++|++.
T Consensus 247 ~L~~LdLs~N~li 259 (505)
T KOG3207|consen 247 TLQELDLSNNNLI 259 (505)
T ss_pred HHhhccccCCccc
Confidence 3444444444444
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.81 E-value=0.00069 Score=51.55 Aligned_cols=95 Identities=23% Similarity=0.219 Sum_probs=65.8
Q ss_pred ccccEEEeccCc------hhhcc-CCCCCCEEecCCCcCCc-cccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCC
Q 033463 19 QLLQISWILCHL------VYYFT-GLSKLKSLGLAGIKLNR-SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE 90 (118)
Q Consensus 19 ~~L~~L~l~~~~------~~~~~-~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~ 90 (118)
.+|++|+++|.. +..++ .+|.|++|.+.+-.+.. ..-.....+++|..||+|+.+++.. . ++.++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~--GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-S--GISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-H--HHhccccHH
Confidence 367788887533 33343 47999999988866643 2233456789999999999999844 3 588899999
Q ss_pred EEEcCCCCCCCCCc----CCCCCcceEEEe
Q 033463 91 VLDLSWNEIDNLVV----PQGKQLKCYLIT 116 (118)
Q Consensus 91 ~l~ls~N~l~~~~~----~~~~~l~~~~~~ 116 (118)
+|-+.+=.++.-.. -.-+.|+.++||
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecc
Confidence 99888777765221 134677777765
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=4.6e-05 Score=51.82 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=52.5
Q ss_pred hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCC
Q 033463 32 YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 32 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~ 103 (118)
.....|+-|+.|.|+-|.++... .+..+++|++|+|..|.|.+.....-+.++++|+.|+|..|.-.|.-
T Consensus 35 sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccccc
Confidence 34457788888888888887533 36778888888888888886655555777888888888888776653
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.78 E-value=0.0012 Score=46.15 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=49.5
Q ss_pred cccCccccEEEeccCc---------hhhccCCCCCCEEecCCCcCCcc----ccccccCCCCCcEEecCCCCCCCCCCh-
Q 033463 15 IKKCQLLQISWILCHL---------VYYFTGLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV- 80 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~---------~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~ls~n~l~~~~~~- 80 (118)
+...+.|+.+.+..+. ...+..+++|+.|++..|.|+.. +...+..+++|+.+++++|.+...-..
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 3344555655555221 22345677777777777777642 223345567777777777777633111
Q ss_pred --hh-hcCCCCCCEEEcCCCCCCC
Q 033463 81 --RE-FDSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 81 --~~-~~~l~~L~~l~ls~N~l~~ 101 (118)
.. -...++|+++.+.+|.++.
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHH
Confidence 11 2224677777777777653
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.0012 Score=45.50 Aligned_cols=62 Identities=29% Similarity=0.302 Sum_probs=30.1
Q ss_pred CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCC
Q 033463 36 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 97 (118)
Q Consensus 36 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N 97 (118)
++|.++.|+++.|.+...+-..-....+|+.+.+.+..+.+.-....+..+|.++.+.++.|
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 45666666666665543221111233455556555555553322222444555555555555
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.40 E-value=0.0054 Score=40.03 Aligned_cols=78 Identities=19% Similarity=0.164 Sum_probs=56.1
Q ss_pred cEEEeccCchhhccC----CCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCC
Q 033463 22 QISWILCHLVYYFTG----LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 97 (118)
Q Consensus 22 ~~L~l~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N 97 (118)
+.+++.+...+.+++ ..+...++++.|.+.. -..+..++.|.+|.+++|.+...-|. .-..++++..|.+.+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCc
Confidence 345555444444443 2566789999998863 34577789999999999999976664 2344678999999999
Q ss_pred CCCCC
Q 033463 98 EIDNL 102 (118)
Q Consensus 98 ~l~~~ 102 (118)
.+...
T Consensus 99 si~~l 103 (233)
T KOG1644|consen 99 SIQEL 103 (233)
T ss_pred chhhh
Confidence 87664
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.35 E-value=0.0024 Score=26.37 Aligned_cols=18 Identities=50% Similarity=0.591 Sum_probs=9.4
Q ss_pred CCEEecCCCcCCccccccc
Q 033463 40 LKSLGLAGIKLNRSILSSL 58 (118)
Q Consensus 40 L~~L~l~~n~l~~~~~~~~ 58 (118)
|++|++++|+++ .+|+.+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455666666555 344433
No 55
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.30 E-value=0.0028 Score=24.56 Aligned_cols=14 Identities=50% Similarity=0.653 Sum_probs=6.0
Q ss_pred CCCEEEcCCCCCCC
Q 033463 88 NLEVLDLSWNEIDN 101 (118)
Q Consensus 88 ~L~~l~ls~N~l~~ 101 (118)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45555555555544
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.87 E-value=0.0031 Score=44.11 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=65.9
Q ss_pred cccccCccccEEEeccCc---------hhhccCCCCCCEEecCCCcCCcccccc----c-cCCCCCcEEecCCCCCCCCC
Q 033463 13 NTIKKCQLLQISWILCHL---------VYYFTGLSKLKSLGLAGIKLNRSILSS----L-TVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~---------~~~~~~l~~L~~L~l~~n~l~~~~~~~----~-~~l~~L~~l~ls~n~l~~~~ 78 (118)
..+..+++|+.|+++.|. ...+..+++|+.+.+++|.+...-... + ...|+|+.+.+.+|.++..-
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 346678899999999664 345677899999999999997533322 2 23689999999999998331
Q ss_pred ---ChhhhcCCCCCCEEEcCCCCCC
Q 033463 79 ---DVREFDSFNNLEVLDLSWNEID 100 (118)
Q Consensus 79 ---~~~~~~~l~~L~~l~ls~N~l~ 100 (118)
-.......+.|..|++++|.+.
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCccccc
Confidence 1123556789999999999983
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.66 E-value=0.00032 Score=53.37 Aligned_cols=88 Identities=19% Similarity=0.119 Sum_probs=61.4
Q ss_pred ccccCccccEEEeccCchhhccCC----CCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCC
Q 033463 14 TIKKCQLLQISWILCHLVYYFTGL----SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNL 89 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L 89 (118)
.+..++.|+.|+++-|....+..+ ..|+.|.+.+|-++.. ..+.++.+|+.||++.|.+.+.-....+..+..|
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL 281 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence 566788899999986553332221 3388888888877632 2466788888999999988865544445556778
Q ss_pred CEEEcCCCCCCCCC
Q 033463 90 EVLDLSWNEIDNLV 103 (118)
Q Consensus 90 ~~l~ls~N~l~~~~ 103 (118)
+.|+|.+|.+-.-+
T Consensus 282 ~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 282 IVLWLEGNPLCCAP 295 (1096)
T ss_pred HHHhhcCCccccCH
Confidence 88888888875544
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.015 Score=40.29 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=18.7
Q ss_pred CCCCEEecCCCcCCcc--ccccccCCCCCcEEecCCCCCC
Q 033463 38 SKLKSLGLAGIKLNRS--ILSSLTVFSSLRELHLRDTGFK 75 (118)
Q Consensus 38 ~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~l~ls~n~l~ 75 (118)
+.++.+++.+|.++.. +...+.++|.++.|+++.|++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 4455555555555431 2222344555555555555555
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.26 E-value=0.14 Score=30.20 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=37.0
Q ss_pred ccccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCC
Q 033463 14 TIKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNL 89 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L 89 (118)
.+..+++|+.+.+.... ...|.++++++.+.+..+ +.......+..+++++.+.+.+ .+. ..+...|...+++
T Consensus 7 ~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence 35555566666665221 223555666777766554 4433334455666677777654 332 2222246666666
Q ss_pred CEEEcCCC
Q 033463 90 EVLDLSWN 97 (118)
Q Consensus 90 ~~l~ls~N 97 (118)
+.+++..+
T Consensus 84 ~~i~~~~~ 91 (129)
T PF13306_consen 84 KNIDIPSN 91 (129)
T ss_dssp CEEEETTT
T ss_pred cccccCcc
Confidence 66666544
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.09 E-value=0.02 Score=38.49 Aligned_cols=64 Identities=28% Similarity=0.457 Sum_probs=45.4
Q ss_pred cCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCC--CCCCCCChhhhcCCCCCCEEEcCCCCCCC
Q 033463 35 TGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDT--GFKGTFDVREFDSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 35 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n--~l~~~~~~~~~~~l~~L~~l~ls~N~l~~ 101 (118)
..+..++.+.+....++. -..+-.+++|+.|.++.| .+.+.++.- ....++|+++++++|++..
T Consensus 40 d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred ccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc
Confidence 345566777766666653 224556789999999999 555444442 4456999999999999885
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.05 E-value=0.023 Score=24.15 Aligned_cols=19 Identities=42% Similarity=0.443 Sum_probs=9.4
Q ss_pred CCCCEEEcCCCCCCCCCcC
Q 033463 87 NNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 87 ~~L~~l~ls~N~l~~~~~~ 105 (118)
++|+.|++++|.++..++.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555555554443
No 62
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.05 E-value=0.023 Score=24.15 Aligned_cols=19 Identities=42% Similarity=0.443 Sum_probs=9.4
Q ss_pred CCCCEEEcCCCCCCCCCcC
Q 033463 87 NNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 87 ~~L~~l~ls~N~l~~~~~~ 105 (118)
++|+.|++++|.++..++.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555555554443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.0011 Score=45.29 Aligned_cols=79 Identities=23% Similarity=0.210 Sum_probs=59.4
Q ss_pred cccCccccEEEeccCchh---hccCCCCCCEEecCCCcCCcccc-ccccCCCCCcEEecCCCCCCCCCC----hhhhcCC
Q 033463 15 IKKCQLLQISWILCHLVY---YFTGLSKLKSLGLAGIKLNRSIL-SSLTVFSSLRELHLRDTGFKGTFD----VREFDSF 86 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~ls~n~l~~~~~----~~~~~~l 86 (118)
+.+|+.|+.|.++.|.+. .+..+++|+.|.|..|.+..... ..++++++|+.|.+..|...+.-+ ...+.-+
T Consensus 37 c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 457889999999977654 45568899999999999975322 346889999999999999986543 1235567
Q ss_pred CCCCEEE
Q 033463 87 NNLEVLD 93 (118)
Q Consensus 87 ~~L~~l~ 93 (118)
|+|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 7777764
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.90 E-value=0.16 Score=36.79 Aligned_cols=16 Identities=25% Similarity=0.071 Sum_probs=9.6
Q ss_pred CCCEEEcCCCCCCCCC
Q 033463 88 NLEVLDLSWNEIDNLV 103 (118)
Q Consensus 88 ~L~~l~ls~N~l~~~~ 103 (118)
+|+.|++++|.....+
T Consensus 157 SLk~L~Is~c~~i~LP 172 (426)
T PRK15386 157 SLKTLSLTGCSNIILP 172 (426)
T ss_pred cccEEEecCCCcccCc
Confidence 5667777766554433
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.43 E-value=0.086 Score=36.34 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=53.3
Q ss_pred hhccCCCCCCEEecCCCcCCccccccc----cCCCCCcEEecCCCCCCCCCChhhhc-------------CCCCCCEEEc
Q 033463 32 YYFTGLSKLKSLGLAGIKLNRSILSSL----TVFSSLRELHLRDTGFKGTFDVREFD-------------SFNNLEVLDL 94 (118)
Q Consensus 32 ~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~l~ls~n~l~~~~~~~~~~-------------~l~~L~~l~l 94 (118)
+.+-.||+++..++|.|-|....|+.+ ..-+.|.+|.+++|.+. .+.+..++ .-|.|+++.+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 345578999999999999987767654 44577999999999987 33322232 3467899999
Q ss_pred CCCCCCCCCc
Q 033463 95 SWNEIDNLVV 104 (118)
Q Consensus 95 s~N~l~~~~~ 104 (118)
..|.+...+.
T Consensus 165 grNRlengs~ 174 (388)
T COG5238 165 GRNRLENGSK 174 (388)
T ss_pred ccchhccCcH
Confidence 9998876654
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.45 E-value=0.49 Score=27.74 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=47.0
Q ss_pred cccccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCC
Q 033463 13 NTIKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNN 88 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~ 88 (118)
..+..+++++.+.+.... ...+..++.++.+.+.. .+.......+..+++++.+.+..+ +. .++...|.+. .
T Consensus 29 ~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~ 104 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-N 104 (129)
T ss_dssp TTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T
T ss_pred hhcccccccccccccccccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-C
Confidence 346777789999887432 23466777899999975 444344556777899999999776 54 3444458776 8
Q ss_pred CCEEEcCC
Q 033463 89 LEVLDLSW 96 (118)
Q Consensus 89 L~~l~ls~ 96 (118)
++.+.+..
T Consensus 105 l~~i~~~~ 112 (129)
T PF13306_consen 105 LKEINIPS 112 (129)
T ss_dssp --EEE-TT
T ss_pred ceEEEECC
Confidence 88888775
No 67
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=91.31 E-value=0.22 Score=21.45 Aligned_cols=16 Identities=56% Similarity=0.735 Sum_probs=10.8
Q ss_pred CCCCEEEcCCCCCCCC
Q 033463 87 NNLEVLDLSWNEIDNL 102 (118)
Q Consensus 87 ~~L~~l~ls~N~l~~~ 102 (118)
++|+.|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677777777777544
No 68
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.59 E-value=0.21 Score=21.49 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=13.5
Q ss_pred CCCCEEEcCCCCCCCCCc
Q 033463 87 NNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 87 ~~L~~l~ls~N~l~~~~~ 104 (118)
++|+.|++++|++++.|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467788888888887764
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.83 E-value=0.39 Score=33.25 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=59.7
Q ss_pred cccccCccccEEEeccCchh---------hccCCCCCCEEecCCCcC---Cccccc-------cccCCCCCcEEecCCCC
Q 033463 13 NTIKKCQLLQISWILCHLVY---------YFTGLSKLKSLGLAGIKL---NRSILS-------SLTVFSSLRELHLRDTG 73 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~~~---------~~~~l~~L~~L~l~~n~l---~~~~~~-------~~~~l~~L~~l~ls~n~ 73 (118)
..+..+..++.++++||... .+.+-.+|+...++.--. ...+++ .+-++|+++..++|+|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34556778888999977621 233456677776665321 112333 24578999999999999
Q ss_pred CCCCCCh---hhhcCCCCCCEEEcCCCCCCC
Q 033463 74 FKGTFDV---REFDSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 74 l~~~~~~---~~~~~l~~L~~l~ls~N~l~~ 101 (118)
+....+. .-+...+.|.+|.+++|.+.-
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 9876553 235667889999999997653
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.81 E-value=0.087 Score=21.87 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=6.9
Q ss_pred CCCCEEecCCCcCCc
Q 033463 38 SKLKSLGLAGIKLNR 52 (118)
Q Consensus 38 ~~L~~L~l~~n~l~~ 52 (118)
++|+.|++++|.++.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555543
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=0.16 Score=35.42 Aligned_cols=61 Identities=21% Similarity=0.124 Sum_probs=32.7
Q ss_pred CCCCCCEEecCCCc-CCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCC
Q 033463 36 GLSKLKSLGLAGIK-LNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 96 (118)
Q Consensus 36 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~ 96 (118)
.++++..||++.+. +.......+.+++.|+++.+++|-....-....++..|+|..|++-+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 35666677776653 33333344556666777766666544111112355566666666543
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.48 E-value=0.9 Score=33.07 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=30.3
Q ss_pred ccCccccEEEeccCchhhccCCC-CCCEEecCCC-cCCccccccccCCCCCcEEecCCC
Q 033463 16 KKCQLLQISWILCHLVYYFTGLS-KLKSLGLAGI-KLNRSILSSLTVFSSLRELHLRDT 72 (118)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~ls~n 72 (118)
..+.+++.|+++.+....+..+| +|+.|.++++ .++ ..|..+ .++|+.|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPVLPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCc
Confidence 34566777777755444444443 4777777653 332 333322 256777777776
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.73 E-value=0.48 Score=20.52 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=11.0
Q ss_pred CCCCEEEcCCCCCCC
Q 033463 87 NNLEVLDLSWNEIDN 101 (118)
Q Consensus 87 ~~L~~l~ls~N~l~~ 101 (118)
++|+.|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467888888887753
No 74
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.33 E-value=0.027 Score=39.14 Aligned_cols=80 Identities=26% Similarity=0.257 Sum_probs=42.7
Q ss_pred ccEEEeccCc------hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCC-CCCCChhhhcCCCCCCEEE
Q 033463 21 LQISWILCHL------VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGF-KGTFDVREFDSFNNLEVLD 93 (118)
Q Consensus 21 L~~L~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l-~~~~~~~~~~~l~~L~~l~ 93 (118)
+++++++... ...+..+.+|+.+.+.++++.+.+...+.+-..|+.++++.+.= +..-....+.++..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5666665222 22344566666666666666655555555556666666665432 2111112355556666666
Q ss_pred cCCCCCC
Q 033463 94 LSWNEID 100 (118)
Q Consensus 94 ls~N~l~ 100 (118)
++++.+.
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 6666443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.21 E-value=0.14 Score=33.49 Aligned_cols=65 Identities=26% Similarity=0.183 Sum_probs=34.7
Q ss_pred hhccCCCCCCEEecCCCc-CCccccccccC-CCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCC
Q 033463 32 YYFTGLSKLKSLGLAGIK-LNRSILSSLTV-FSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 96 (118)
Q Consensus 32 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~ 96 (118)
+.+..++.++.+.+.++. +....-+.+++ .++|+.|++++|.-....-...+..+++|+.+.+.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 344556666666665542 22222222333 377888888877654333333466666776666543
No 76
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.73 E-value=0.49 Score=35.42 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=32.9
Q ss_pred CCCCCCEEecCCCcCCccc-ccc-ccCCCCCcEEecCCC--CCCCCCChhhhcCCCCCCEEEcCCCCCCCC
Q 033463 36 GLSKLKSLGLAGIKLNRSI-LSS-LTVFSSLRELHLRDT--GFKGTFDVREFDSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 36 ~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~l~ls~n--~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~ 102 (118)
+.+.+..+.++.|++.... ... ....|.|..|+|++| .+........++ ..-|+.+.+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccccc
Confidence 3455666666666665421 111 233466667777776 444322222222 22356666666665543
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.81 E-value=0.88 Score=32.70 Aligned_cols=84 Identities=27% Similarity=0.224 Sum_probs=44.6
Q ss_pred cccCccccEEEeccC--c--------hhhccCCCCCCEEecCCCc-CCcccccccc-CCCCCcEEecCCCC-CCCCCChh
Q 033463 15 IKKCQLLQISWILCH--L--------VYYFTGLSKLKSLGLAGIK-LNRSILSSLT-VFSSLRELHLRDTG-FKGTFDVR 81 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~--~--------~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~l~ls~n~-l~~~~~~~ 81 (118)
....++|+.+++++. . ......+++++.++++... ++...-..+. .+++|+.|.+.++. +++.--..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 344556666666531 0 1123345667777777665 4433222232 25677777766666 44322222
Q ss_pred hhcCCCCCCEEEcCCCC
Q 033463 82 EFDSFNNLEVLDLSWNE 98 (118)
Q Consensus 82 ~~~~l~~L~~l~ls~N~ 98 (118)
.....++|+.++++++.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 34456667777777554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.63 E-value=0.018 Score=38.65 Aligned_cols=82 Identities=9% Similarity=-0.027 Sum_probs=46.3
Q ss_pred cccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCC
Q 033463 15 IKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE 90 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~ 90 (118)
+......+.|+++.+. -..++.++.+..++++.|.+. ..|..++....+..+++-.|... ..|. .++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccCCcc
Confidence 4445555666665332 223334455566666666655 34555666666666666656555 3343 366667777
Q ss_pred EEEcCCCCC
Q 033463 91 VLDLSWNEI 99 (118)
Q Consensus 91 ~l~ls~N~l 99 (118)
.+++-.|++
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 776666664
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.60 E-value=0.28 Score=32.19 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=37.9
Q ss_pred ccccCccccEEEeccCc------hhhcc-CCCCCCEEecCCC-cCCccccccccCCCCCcEEecCC
Q 033463 14 TIKKCQLLQISWILCHL------VYYFT-GLSKLKSLGLAGI-KLNRSILSSLTVFSSLRELHLRD 71 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~------~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~ls~ 71 (118)
.+..++.++.+.+.... .+.++ -.++|+.|++++| +++..--..+..+++|+.|.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34556666777776222 33333 3589999999977 66655455667788888887654
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=77.04 E-value=2.4 Score=37.65 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=26.7
Q ss_pred ecCCCcCCccccccccCCCCCcEEecCCCCCC
Q 033463 44 GLAGIKLNRSILSSLTVFSSLRELHLRDTGFK 75 (118)
Q Consensus 44 ~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~ 75 (118)
+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888766677888899999999998876
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.68 E-value=0.031 Score=37.60 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=55.8
Q ss_pred hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcCCC
Q 033463 33 YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 107 (118)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~~~ 107 (118)
.+..+...+.||++.|++. .+-..++.++.+..++++.|++. ..|.+ +++...++.+++..|..+-.|-+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKD-AKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhh-HHHHHHHHHHHhhccchhhCCcccc
Confidence 4556778889999999876 33455777788999999999998 66654 8888888888888888887776644
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.48 E-value=7.3 Score=16.17 Aligned_cols=12 Identities=42% Similarity=0.565 Sum_probs=7.3
Q ss_pred CCCcEEecCCCC
Q 033463 62 SSLRELHLRDTG 73 (118)
Q Consensus 62 ~~L~~l~ls~n~ 73 (118)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666664
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=57.78 E-value=8.5 Score=34.58 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.1
Q ss_pred hhccCCCCCCEEecCCCcCC
Q 033463 32 YYFTGLSKLKSLGLAGIKLN 51 (118)
Q Consensus 32 ~~~~~l~~L~~L~l~~n~l~ 51 (118)
..|..+++|+.|+|++|.+.
T Consensus 13 g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 13 GICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred HHhccCCCceEEEeeCCccc
Confidence 45667888999999998775
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.94 E-value=15 Score=27.96 Aligned_cols=62 Identities=24% Similarity=0.127 Sum_probs=38.4
Q ss_pred cCccccEEEeccCchhhc-------cCCCCCCEEecCCCcCCccccccccC--CCCCcEEecCCCCCCCCC
Q 033463 17 KCQLLQISWILCHLVYYF-------TGLSKLKSLGLAGIKLNRSILSSLTV--FSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~l~ls~n~l~~~~ 78 (118)
+.+.+..+.++.|....+ +..|++..|+|+.|...-....++.+ ...|++|.+.+|++....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 344556666665543222 24688999999999322222233333 355889999999998654
No 85
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.65 E-value=39 Score=14.43 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=10.3
Q ss_pred hhcCCCCCCEEEcCC
Q 033463 82 EFDSFNNLEVLDLSW 96 (118)
Q Consensus 82 ~~~~l~~L~~l~ls~ 96 (118)
.+..+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 366678888887653
Done!