Query 033463
Match_columns 118
No_of_seqs 120 out of 1496
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 03:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9t_B SLIT homolog 2 protein 99.6 1.2E-14 4.2E-19 93.9 11.0 101 5-106 42-147 (220)
2 2v70_A SLIT-2, SLIT homolog 2 99.6 3.9E-14 1.3E-18 91.5 11.0 93 14-107 52-149 (220)
3 3rgz_A Protein brassinosteroid 99.6 5.5E-15 1.9E-19 110.1 7.9 101 5-106 618-723 (768)
4 3m19_A Variable lymphocyte rec 99.6 6.3E-14 2.2E-18 91.9 11.8 69 35-104 104-172 (251)
5 3e6j_A Variable lymphocyte rec 99.6 6.2E-14 2.1E-18 91.0 11.7 103 2-106 47-154 (229)
6 3m19_A Variable lymphocyte rec 99.6 7.5E-14 2.6E-18 91.6 11.9 112 3-115 43-162 (251)
7 1w8a_A SLIT protein; signaling 99.5 4.8E-14 1.6E-18 89.3 9.5 71 34-105 50-120 (192)
8 2o6s_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 87.7 11.8 111 4-115 37-155 (208)
9 4fcg_A Uncharacterized protein 99.5 9.8E-14 3.3E-18 94.4 10.3 100 10-110 197-300 (328)
10 2v70_A SLIT-2, SLIT homolog 2 99.5 8.5E-14 2.9E-18 89.9 9.5 100 4-104 66-170 (220)
11 2je0_A Acidic leucine-rich nuc 99.5 3.9E-14 1.3E-18 86.1 7.0 101 4-104 26-130 (149)
12 2ell_A Acidic leucine-rich nuc 99.5 7.2E-14 2.5E-18 86.5 8.1 102 3-104 32-137 (168)
13 3rfs_A Internalin B, repeat mo 99.5 3.5E-13 1.2E-17 89.3 11.8 98 7-105 97-199 (272)
14 2o6r_A Variable lymphocyte rec 99.5 2.5E-13 8.6E-18 84.7 10.0 86 19-105 28-118 (177)
15 4g8a_A TOLL-like receptor 4; l 99.5 2.3E-13 7.7E-18 98.4 10.9 97 5-102 62-163 (635)
16 2wfh_A SLIT homolog 2 protein 99.5 2.7E-13 9.3E-18 86.0 10.0 86 19-105 31-120 (193)
17 1ogq_A PGIP-2, polygalacturona 99.5 2.8E-14 9.7E-19 96.4 5.7 94 10-104 67-166 (313)
18 2wfh_A SLIT homolog 2 protein 99.5 4.9E-13 1.7E-17 84.8 10.8 92 10-102 45-141 (193)
19 2xot_A Amphoterin-induced prot 99.5 2.4E-13 8.3E-18 93.4 10.0 94 11-105 55-154 (361)
20 3v47_A TOLL-like receptor 5B a 99.5 2.6E-13 9E-18 95.2 10.2 100 6-106 286-390 (455)
21 2v9t_B SLIT homolog 2 protein 99.5 2.5E-13 8.7E-18 87.7 9.1 99 3-102 64-167 (220)
22 1w8a_A SLIT protein; signaling 99.5 2.9E-13 1E-17 85.7 9.2 99 5-104 39-143 (192)
23 2o6q_A Variable lymphocyte rec 99.5 8.1E-13 2.8E-17 87.4 11.4 94 9-103 51-149 (270)
24 2o6q_A Variable lymphocyte rec 99.5 1.1E-12 3.6E-17 86.9 11.8 70 35-105 130-199 (270)
25 4g8a_A TOLL-like receptor 4; l 99.5 4.5E-13 1.6E-17 96.8 10.7 109 6-115 456-574 (635)
26 3g39_A Variable lymphocyte rec 99.5 7.8E-13 2.7E-17 82.3 10.3 91 11-104 24-119 (170)
27 1ozn_A Reticulon 4 receptor; N 99.5 5.5E-13 1.9E-17 88.7 10.2 67 35-102 102-168 (285)
28 2o6s_A Variable lymphocyte rec 99.5 1.3E-12 4.4E-17 83.4 11.1 101 4-105 61-166 (208)
29 2r9u_A Variable lymphocyte rec 99.5 9.3E-13 3.2E-17 82.3 10.2 92 10-104 26-122 (174)
30 1ogq_A PGIP-2, polygalacturona 99.5 1.2E-13 4.1E-18 93.3 6.3 100 5-105 87-192 (313)
31 1wwl_A Monocyte differentiatio 99.4 4.9E-13 1.7E-17 90.2 9.1 111 5-115 159-281 (312)
32 2z66_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 88.1 10.6 99 6-105 137-241 (306)
33 3v47_A TOLL-like receptor 5B a 99.4 7.2E-13 2.5E-17 92.9 10.2 102 3-105 307-413 (455)
34 3rfs_A Internalin B, repeat mo 99.4 1.4E-12 4.9E-17 86.4 11.0 102 3-105 117-223 (272)
35 1dce_A Protein (RAB geranylger 99.4 1.1E-12 3.6E-17 95.3 11.2 98 4-106 450-552 (567)
36 1p9a_G Platelet glycoprotein I 99.4 2.1E-12 7.1E-17 86.6 11.8 95 10-105 91-190 (290)
37 3rgz_A Protein brassinosteroid 99.4 6.6E-13 2.3E-17 99.0 10.1 98 6-104 429-531 (768)
38 1ozn_A Reticulon 4 receptor; N 99.4 1.6E-12 5.5E-17 86.4 10.9 110 5-115 42-160 (285)
39 2xot_A Amphoterin-induced prot 99.4 1.1E-12 3.8E-17 90.1 9.9 102 3-105 72-181 (361)
40 3oja_B Anopheles plasmodium-re 99.4 1.1E-12 3.9E-17 95.3 10.4 90 15-105 71-165 (597)
41 2o6r_A Variable lymphocyte rec 99.4 4.6E-12 1.6E-16 78.9 11.7 100 4-104 37-141 (177)
42 3o6n_A APL1; leucine-rich repe 99.4 1.8E-12 6.3E-17 89.6 10.4 90 15-105 65-159 (390)
43 3e6j_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 82.8 10.4 100 3-104 72-176 (229)
44 1p9a_G Platelet glycoprotein I 99.4 2.8E-12 9.5E-17 85.9 10.1 73 33-106 95-167 (290)
45 3t6q_A CD180 antigen; protein- 99.4 2.4E-12 8.1E-17 93.2 10.5 99 4-103 42-145 (606)
46 2z62_A TOLL-like receptor 4, v 99.4 3.6E-12 1.2E-16 84.4 10.2 89 12-101 45-138 (276)
47 3vq2_A TLR4, TOLL-like recepto 99.4 1.5E-12 5.3E-17 94.2 9.1 94 7-101 44-142 (606)
48 4ezg_A Putative uncharacterize 99.4 2.8E-12 9.5E-17 81.3 9.2 99 14-115 83-188 (197)
49 3vq2_A TLR4, TOLL-like recepto 99.4 2E-12 6.9E-17 93.6 9.4 103 5-108 66-174 (606)
50 4ezg_A Putative uncharacterize 99.4 5.8E-12 2E-16 79.8 10.5 103 11-115 59-166 (197)
51 4fcg_A Uncharacterized protein 99.4 1.6E-12 5.4E-17 88.4 8.2 65 37-104 182-246 (328)
52 2ifg_A High affinity nerve gro 99.4 5.7E-12 1.9E-16 85.9 10.7 91 10-103 23-119 (347)
53 2id5_A Lingo-1, leucine rich r 99.4 2.5E-12 8.7E-17 90.9 9.1 95 9-104 46-145 (477)
54 2z62_A TOLL-like receptor 4, v 99.4 2.6E-12 8.8E-17 85.1 8.3 101 4-105 61-167 (276)
55 3o6n_A APL1; leucine-rich repe 99.4 3.7E-12 1.3E-16 88.0 9.4 110 5-115 79-193 (390)
56 3oja_B Anopheles plasmodium-re 99.4 2.9E-12 9.8E-17 93.2 9.2 111 4-115 84-199 (597)
57 1ziw_A TOLL-like receptor 3; i 99.4 6.1E-12 2.1E-16 92.2 11.0 99 6-105 36-139 (680)
58 4eco_A Uncharacterized protein 99.4 5.5E-13 1.9E-17 97.7 5.3 97 6-104 194-322 (636)
59 3j0a_A TOLL-like receptor 5; m 99.4 4.3E-12 1.5E-16 95.5 9.8 112 5-116 34-156 (844)
60 2z63_A TOLL-like receptor 4, v 99.4 5.5E-12 1.9E-16 90.5 10.0 91 14-105 416-512 (570)
61 2z66_A Variable lymphocyte rec 99.4 6.5E-12 2.2E-16 84.2 9.6 102 13-115 120-230 (306)
62 2z81_A CD282 antigen, TOLL-lik 99.4 3.7E-12 1.3E-16 91.2 8.9 66 34-100 46-111 (549)
63 2id5_A Lingo-1, leucine rich r 99.3 5.6E-12 1.9E-16 89.1 9.1 99 5-104 66-169 (477)
64 4b8c_D Glucose-repressible alc 99.3 1.8E-12 6.3E-17 96.3 6.9 89 12-103 217-309 (727)
65 2z80_A TOLL-like receptor 2, v 99.3 6.3E-12 2.2E-16 85.9 8.9 84 20-104 53-141 (353)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.5E-11 5.2E-16 88.6 11.2 97 4-103 61-162 (562)
67 1a9n_A U2A', U2A'; complex (nu 99.3 7E-12 2.4E-16 78.1 7.9 85 20-104 43-130 (176)
68 2z63_A TOLL-like receptor 4, v 99.3 1.4E-11 4.9E-16 88.3 10.5 101 4-105 430-536 (570)
69 3zyj_A Leucine-rich repeat-con 99.3 9.6E-12 3.3E-16 87.3 9.4 93 14-107 180-275 (440)
70 1ziw_A TOLL-like receptor 3; i 99.3 9E-12 3.1E-16 91.3 9.6 101 4-105 58-163 (680)
71 2z7x_B TOLL-like receptor 1, v 99.3 1.2E-11 4E-16 88.2 9.9 91 7-101 33-129 (520)
72 3t6q_A CD180 antigen; protein- 99.3 1.5E-11 5.3E-16 89.0 10.4 94 10-105 440-541 (606)
73 3zyi_A Leucine-rich repeat-con 99.3 1E-11 3.4E-16 87.5 9.0 65 11-75 91-160 (452)
74 4eco_A Uncharacterized protein 99.3 3.1E-12 1.1E-16 93.7 6.6 93 11-104 239-347 (636)
75 4glp_A Monocyte differentiatio 99.3 3.4E-12 1.2E-16 85.9 6.2 109 5-115 155-279 (310)
76 3g39_A Variable lymphocyte rec 99.3 3.3E-11 1.1E-15 74.9 10.2 94 21-115 11-109 (170)
77 3zyj_A Leucine-rich repeat-con 99.3 1.6E-11 5.3E-16 86.3 9.6 65 11-75 80-149 (440)
78 3zyi_A Leucine-rich repeat-con 99.3 2.2E-11 7.5E-16 85.8 10.3 99 4-102 108-211 (452)
79 2r9u_A Variable lymphocyte rec 99.3 4E-11 1.4E-15 74.9 10.0 91 22-115 15-112 (174)
80 2z80_A TOLL-like receptor 2, v 99.3 8E-11 2.7E-15 80.4 12.1 111 5-115 62-181 (353)
81 2z81_A CD282 antigen, TOLL-lik 99.3 6E-12 2E-16 90.1 6.8 99 4-103 35-140 (549)
82 2ell_A Acidic leucine-rich nuc 99.3 1.3E-11 4.6E-16 76.2 7.4 93 13-105 65-165 (168)
83 1xku_A Decorin; proteoglycan, 99.3 4.9E-11 1.7E-15 80.7 10.7 108 6-114 63-198 (330)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.9E-11 1E-15 87.1 10.1 87 16-102 350-443 (562)
85 2z7x_B TOLL-like receptor 1, v 99.3 2.6E-11 9E-16 86.4 9.5 68 33-100 343-412 (520)
86 2ifg_A High affinity nerve gro 99.3 3.3E-11 1.1E-15 82.1 9.2 78 30-109 24-102 (347)
87 3oja_A Leucine-rich immune mol 99.3 2.9E-11 1E-15 86.2 9.2 98 4-105 129-232 (487)
88 1h6t_A Internalin B; cell adhe 99.3 1.3E-10 4.4E-15 77.8 11.6 83 15-102 86-171 (291)
89 1h6t_A Internalin B; cell adhe 99.2 1.7E-10 5.8E-15 77.2 11.9 98 13-115 106-207 (291)
90 2xwt_C Thyrotropin receptor; s 99.2 4.6E-11 1.6E-15 77.6 8.7 99 15-115 123-233 (239)
91 1h6u_A Internalin H; cell adhe 99.2 1.9E-10 6.4E-15 77.5 11.7 61 36-101 105-165 (308)
92 1wwl_A Monocyte differentiatio 99.2 1.4E-11 4.8E-16 83.0 6.1 71 33-103 168-244 (312)
93 2xwt_C Thyrotropin receptor; s 99.2 1.5E-11 5.2E-16 79.9 6.0 90 12-104 48-148 (239)
94 4ecn_A Leucine-rich repeat pro 99.2 1.1E-11 3.6E-16 93.9 5.8 89 11-100 481-586 (876)
95 4fmz_A Internalin; leucine ric 99.2 7.1E-11 2.4E-15 80.2 9.4 97 15-114 239-339 (347)
96 3j0a_A TOLL-like receptor 5; m 99.2 9.2E-11 3.2E-15 88.3 10.7 94 9-103 280-378 (844)
97 4b8c_D Glucose-repressible alc 99.2 3.7E-11 1.3E-15 89.4 8.4 94 10-106 238-335 (727)
98 2je0_A Acidic leucine-rich nuc 99.2 7.8E-11 2.7E-15 71.3 8.5 95 18-115 16-120 (149)
99 1xku_A Decorin; proteoglycan, 99.2 1.8E-10 6E-15 78.0 10.8 72 32-105 210-281 (330)
100 1a9n_A U2A', U2A'; complex (nu 99.2 7.2E-11 2.5E-15 73.5 8.3 100 13-115 13-120 (176)
101 4ecn_A Leucine-rich repeat pro 99.2 1.7E-10 5.8E-15 87.4 11.6 96 19-116 728-835 (876)
102 1h6u_A Internalin H; cell adhe 99.2 3.5E-10 1.2E-14 76.2 11.9 85 15-104 125-212 (308)
103 3o53_A Protein LRIM1, AGAP0063 99.2 1.1E-10 3.8E-15 78.8 9.2 108 4-115 129-244 (317)
104 2ft3_A Biglycan; proteoglycan, 99.2 2.7E-10 9.3E-15 77.2 10.6 85 12-100 71-160 (332)
105 1m9s_A Internalin B; cell inva 99.2 3.1E-10 1.1E-14 83.0 11.3 82 15-101 83-167 (605)
106 1xeu_A Internalin C; cellular 99.2 6.3E-10 2.1E-14 73.5 11.8 60 38-102 106-165 (263)
107 1m9s_A Internalin B; cell inva 99.2 3.4E-10 1.2E-14 82.8 11.5 84 14-102 104-190 (605)
108 2ft3_A Biglycan; proteoglycan, 99.2 9.8E-11 3.3E-15 79.4 8.0 107 3-111 86-196 (332)
109 4fmz_A Internalin; leucine ric 99.2 1.7E-10 5.9E-15 78.3 8.7 85 13-100 259-346 (347)
110 3oja_A Leucine-rich immune mol 99.1 2E-10 6.9E-15 81.9 8.5 21 7-27 46-66 (487)
111 4glp_A Monocyte differentiatio 99.1 6.1E-11 2.1E-15 79.8 5.2 88 17-104 143-241 (310)
112 1dce_A Protein (RAB geranylger 99.1 2.6E-10 9E-15 82.8 8.3 92 20-115 442-540 (567)
113 1xeu_A Internalin C; cellular 99.1 1.2E-09 4.2E-14 72.1 10.8 95 14-114 58-156 (263)
114 3o53_A Protein LRIM1, AGAP0063 99.1 7.2E-11 2.5E-15 79.7 4.6 47 5-51 44-93 (317)
115 1o6v_A Internalin A; bacterial 99.1 2E-09 6.9E-14 76.0 10.9 85 15-104 283-370 (466)
116 3bz5_A Internalin-J, INLJ; leu 99.1 9.8E-10 3.3E-14 77.8 9.2 92 14-112 59-152 (457)
117 3bz5_A Internalin-J, INLJ; leu 99.0 3.7E-09 1.3E-13 74.9 11.3 101 8-115 31-134 (457)
118 1o6v_A Internalin A; bacterial 99.0 4.2E-09 1.4E-13 74.4 11.3 63 36-103 263-325 (466)
119 1ds9_A Outer arm dynein; leuci 99.0 6.9E-12 2.4E-16 79.5 -3.5 86 14-103 43-131 (198)
120 3cvr_A Invasion plasmid antige 98.9 1.1E-08 3.9E-13 74.3 11.2 14 38-51 100-113 (571)
121 1ds9_A Outer arm dynein; leuci 98.9 1E-11 3.5E-16 78.8 -4.5 97 4-104 57-157 (198)
122 3goz_A Leucine-rich repeat-con 98.9 1.9E-10 6.4E-15 79.0 1.3 100 5-104 8-126 (362)
123 2ast_B S-phase kinase-associat 98.9 2.4E-09 8.3E-14 72.3 6.6 86 15-101 89-183 (336)
124 1jl5_A Outer protein YOPM; leu 98.9 2E-08 6.8E-13 71.1 11.3 88 11-103 146-253 (454)
125 2ca6_A RAN GTPase-activating p 98.9 4.5E-10 1.5E-14 77.5 1.8 68 33-101 211-288 (386)
126 3cvr_A Invasion plasmid antige 98.9 3.1E-08 1.1E-12 72.1 11.0 90 17-116 98-188 (571)
127 2ast_B S-phase kinase-associat 98.9 5.6E-10 1.9E-14 75.4 1.8 38 59-97 219-257 (336)
128 2ca6_A RAN GTPase-activating p 98.9 2.6E-09 9E-14 73.7 4.9 91 14-104 211-320 (386)
129 1jl5_A Outer protein YOPM; leu 98.8 9.1E-08 3.1E-12 67.7 11.4 83 14-103 190-273 (454)
130 4ay9_X Follicle-stimulating ho 98.8 2.1E-08 7E-13 68.6 7.5 93 11-106 24-123 (350)
131 4ay9_X Follicle-stimulating ho 98.8 5.2E-08 1.8E-12 66.6 8.7 105 8-114 93-229 (350)
132 3goz_A Leucine-rich repeat-con 98.7 1E-08 3.4E-13 70.4 4.4 65 39-104 168-242 (362)
133 3g06_A SSPH2 (leucine-rich rep 98.7 1.7E-07 5.7E-12 68.9 10.9 53 19-75 61-114 (622)
134 3g06_A SSPH2 (leucine-rich rep 98.7 8.7E-08 3E-12 70.4 8.1 80 19-104 221-301 (622)
135 3rw6_A Nuclear RNA export fact 98.6 7.1E-08 2.4E-12 64.1 6.0 68 36-104 168-237 (267)
136 1z7x_W Ribonuclease inhibitor; 98.5 1.3E-08 4.4E-13 71.4 -0.1 66 36-102 339-413 (461)
137 3ogk_B Coronatine-insensitive 98.4 8.5E-08 2.9E-12 69.1 1.4 90 13-102 430-528 (592)
138 3rw6_A Nuclear RNA export fact 98.4 5.8E-07 2E-11 59.7 5.1 76 16-93 167-257 (267)
139 1z7x_W Ribonuclease inhibitor; 98.4 1.2E-07 4.2E-12 66.4 1.9 64 12-75 220-297 (461)
140 3sb4_A Hypothetical leucine ri 98.3 1.6E-06 5.3E-11 58.7 7.2 89 18-109 225-319 (329)
141 3un9_A NLR family member X1; l 98.3 7.9E-07 2.7E-11 61.5 4.8 85 18-102 154-254 (372)
142 3sb4_A Hypothetical leucine ri 98.3 2.7E-06 9.2E-11 57.5 7.2 86 7-94 238-328 (329)
143 2p1m_B Transport inhibitor res 98.1 2.2E-07 7.6E-12 66.9 -0.6 85 15-99 428-518 (594)
144 1io0_A Tropomodulin; LRR prote 98.1 5E-06 1.7E-10 52.1 5.2 89 14-102 31-138 (185)
145 1io0_A Tropomodulin; LRR prote 98.0 5.1E-06 1.7E-10 52.0 4.0 88 13-100 59-164 (185)
146 3un9_A NLR family member X1; l 97.9 1.4E-06 4.7E-11 60.3 0.3 85 18-102 125-226 (372)
147 3e4g_A ATP synthase subunit S, 97.9 1.8E-05 6.3E-10 49.4 4.5 90 11-101 53-154 (176)
148 2p1m_B Transport inhibitor res 97.8 8.3E-06 2.9E-10 58.7 2.0 81 17-97 128-221 (594)
149 3ogk_B Coronatine-insensitive 97.7 4.5E-05 1.5E-09 54.9 4.4 56 14-70 187-251 (592)
150 4fdw_A Leucine rich hypothetic 97.6 0.0003 1E-08 49.1 8.2 92 12-107 264-365 (401)
151 3rfe_A Platelet glycoprotein I 97.5 0.00056 1.9E-08 40.4 6.6 35 40-74 33-67 (130)
152 2ra8_A Uncharacterized protein 97.3 0.0002 6.7E-09 49.5 3.4 41 61-101 251-293 (362)
153 4fdw_A Leucine rich hypothetic 97.2 0.0023 7.8E-08 44.6 8.2 71 32-105 265-340 (401)
154 3e4g_A ATP synthase subunit S, 97.1 0.0003 1E-08 43.9 2.4 63 13-75 79-152 (176)
155 3rfe_A Platelet glycoprotein I 96.9 0.0012 4.2E-08 39.0 4.1 58 41-101 11-69 (130)
156 2ra8_A Uncharacterized protein 96.8 0.0017 5.7E-08 44.8 4.4 55 15-70 168-227 (362)
157 4gt6_A Cell surface protein; l 96.7 0.015 5.3E-07 40.0 9.0 63 33-98 306-368 (394)
158 4fs7_A Uncharacterized protein 96.6 0.0072 2.4E-07 41.7 6.9 80 15-97 293-376 (394)
159 4h09_A Hypothetical leucine ri 96.6 0.0092 3.1E-07 40.8 7.3 62 33-96 281-342 (379)
160 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0089 3E-07 37.9 4.7 81 17-97 39-136 (197)
161 4h09_A Hypothetical leucine ri 96.0 0.074 2.5E-06 36.2 9.0 88 15-105 236-327 (379)
162 4gt6_A Cell surface protein; l 95.8 0.11 3.7E-06 35.7 9.2 89 13-105 259-351 (394)
163 1pgv_A TMD-1, tropomodulin TMD 95.5 0.02 6.7E-07 36.3 4.2 68 35-102 38-113 (197)
164 4fs7_A Uncharacterized protein 94.6 0.25 8.5E-06 33.9 8.1 70 33-106 292-361 (394)
165 2lz0_A Uncharacterized protein 42.2 42 0.0014 18.3 4.2 38 33-71 15-52 (100)
No 1
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=1.2e-14 Score=93.91 Aligned_cols=101 Identities=21% Similarity=0.145 Sum_probs=77.9
Q ss_pred eeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
+.+.+..+..+..+++|+.|+++++. +..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+
T Consensus 42 n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH
Confidence 34444455567888888888888554 5567788888889998888886655567788888999999998886655
Q ss_pred hhhhcCCCCCCEEEcCCCCCCCCCcCC
Q 033463 80 VREFDSFNNLEVLDLSWNEIDNLVVPQ 106 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N~l~~~~~~~ 106 (118)
. .|..+++|+.|++++|.+++.++..
T Consensus 122 ~-~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 122 D-AFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp T-TTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred H-HcCCCCCCCEEECCCCcCCEECHHH
Confidence 4 4888888999999999888887753
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=3.9e-14 Score=91.49 Aligned_cols=93 Identities=19% Similarity=0.141 Sum_probs=76.7
Q ss_pred ccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCC
Q 033463 14 TIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNN 88 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~ 88 (118)
.+..+++|+.|+++++. +..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+. .|..+++
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~ 130 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSS 130 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTT
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCcc
Confidence 47788899999998654 33677889999999999999887777788899999999999999876554 4888899
Q ss_pred CCEEEcCCCCCCCCCcCCC
Q 033463 89 LEVLDLSWNEIDNLVVPQG 107 (118)
Q Consensus 89 L~~l~ls~N~l~~~~~~~~ 107 (118)
|+.|++++|.+++.++...
T Consensus 131 L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CSEEECTTSCCCCBCTTTT
T ss_pred CCEEECCCCcCCEECHHHh
Confidence 9999999999998877643
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.57 E-value=5.5e-15 Score=110.07 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=91.4
Q ss_pred eeecCCCccccccCccccEEEecc-----CchhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILC-----HLVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
....+..|..+..+++|+.|++++ ..|..++.++.|+.|++++|.+++.+|..++.+++|+.|++++|++.+.+|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 445566788899999999999984 447889999999999999999999999999999999999999999999888
Q ss_pred hhhhcCCCCCCEEEcCCCCCCCCCcCC
Q 033463 80 VREFDSFNNLEVLDLSWNEIDNLVVPQ 106 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N~l~~~~~~~ 106 (118)
. .+..+++|+.+++++|+++|.+|..
T Consensus 698 ~-~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 698 Q-AMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp G-GGGGCCCCSEEECCSSEEEEECCSS
T ss_pred h-HHhCCCCCCEEECcCCcccccCCCc
Confidence 7 4999999999999999999988864
No 4
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=6.3e-14 Score=91.91 Aligned_cols=69 Identities=26% Similarity=0.361 Sum_probs=32.3
Q ss_pred cCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 35 TGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 35 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
..+++|+.|++++|.++...+..+..+++|++|++++|.+.+..+. .|..+++|+.|++++|.+++.++
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG-AFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH-HcCcCcCCCEEECCCCcCCccCH
Confidence 3444444444444444433333344445555555555555433322 24445555555555555555444
No 5
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=6.2e-14 Score=91.01 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=82.4
Q ss_pred CCceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCC
Q 033463 2 IDKFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG 76 (118)
Q Consensus 2 i~~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~ 76 (118)
++.+.+++..|..+..+++|+.|+++++. +..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 47 Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~- 125 (229)
T 3e6j_A 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT- 125 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred cCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-
Confidence 34556667677888899999999998654 234577899999999999998776666788999999999999998
Q ss_pred CCChhhhcCCCCCCEEEcCCCCCCCCCcCC
Q 033463 77 TFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 106 (118)
Q Consensus 77 ~~~~~~~~~l~~L~~l~ls~N~l~~~~~~~ 106 (118)
.+|. .+..+++|+.|++++|++++.++..
T Consensus 126 ~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 126 ELPR-GIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp SCCT-TGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred ccCc-ccccCCCCCEEECCCCcCCccCHHH
Confidence 4554 4788899999999999999887653
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=7.5e-14 Score=91.55 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=88.2
Q ss_pred CceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC
Q 033463 3 DKFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 77 (118)
Q Consensus 3 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~ 77 (118)
+.+.+.+..+..+..+++|++|+++++. +..+..+++|+.|++++|.++...+..+..+++|++|++++|.+.+.
T Consensus 43 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 122 (251)
T 3m19_A 43 QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCc
Confidence 3455566667778889999999998554 34577889999999999999877677788899999999999999965
Q ss_pred CChhhhcCCCCCCEEEcCCCCCCCCCcCCC---CCcceEEE
Q 033463 78 FDVREFDSFNNLEVLDLSWNEIDNLVVPQG---KQLKCYLI 115 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~l~~~~~~~~---~~l~~~~~ 115 (118)
.+. .|..+++|+.|++++|.+++.++... ..++.+.+
T Consensus 123 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 123 PSG-VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp CTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred Chh-HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 553 47889999999999999998887533 45555544
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=4.8e-14 Score=89.33 Aligned_cols=71 Identities=24% Similarity=0.257 Sum_probs=35.8
Q ss_pred ccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 34 FTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 34 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+. .|..+++|+.|++++|++++.++.
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK-MFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS-SSTTCTTCCEEECCSSCCCEECTT
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCeeCHH
Confidence 44455555555555555544444555555555555555555533332 244555555555555555554443
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=1.5e-13 Score=87.71 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=80.5
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
.+.+....+..+..+++|++|+++++. +..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 116 (208)
T 2o6s_A 37 TNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccC
Confidence 344554455557788888888888553 233567888899999988888665666788888999999999888555
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCcCCC---CCcceEEE
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVVPQG---KQLKCYLI 115 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~~~~---~~l~~~~~ 115 (118)
+. .+..+++|+.|++++|.+++.++... ..++.+.+
T Consensus 117 ~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 117 DG-VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred Hh-HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 43 47888889999999998888776532 34444443
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.52 E-value=9.8e-14 Score=94.42 Aligned_cols=100 Identities=23% Similarity=0.108 Sum_probs=80.0
Q ss_pred CCccccccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcC
Q 033463 10 GTTNTIKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDS 85 (118)
Q Consensus 10 ~~p~~~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~ 85 (118)
.+|..+..+++|+.|+++++. |+.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.. +..
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~ 275 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHR 275 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGG
T ss_pred cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhc
Confidence 567778888888888888543 556778888899999988888888888888888999999988888777764 888
Q ss_pred CCCCCEEEcCCCCCCCCCcCCCCCc
Q 033463 86 FNNLEVLDLSWNEIDNLVVPQGKQL 110 (118)
Q Consensus 86 l~~L~~l~ls~N~l~~~~~~~~~~l 110 (118)
+++|+.|++++|++.+..|.....+
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CCCCCEEeCCCCCchhhccHHHhhc
Confidence 8899999999988888777644333
No 10
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=8.5e-14 Score=89.91 Aligned_cols=100 Identities=20% Similarity=0.180 Sum_probs=85.2
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
.+.++...+..+..+++|+.|+++++. +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..
T Consensus 66 ~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 66 NNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred CCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 344555566689999999999999654 445888999999999999999888888999999999999999999776
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
+. .|..+++|+.+++++|.+.+..+
T Consensus 146 ~~-~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 146 PG-AFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TT-TTTTCTTCCEEECCSCCEECSGG
T ss_pred HH-HhcCCCCCCEEEecCcCCcCCCc
Confidence 65 59999999999999999876543
No 11
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=3.9e-14 Score=86.11 Aligned_cols=101 Identities=19% Similarity=0.162 Sum_probs=83.6
Q ss_pred ceeec-CCCccccccCccccEEEeccCch---hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 4 KFVVS-KGTTNTIKKCQLLQISWILCHLV---YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 4 ~~~~~-~~~p~~~~~l~~L~~L~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
.+.+. +.+|..+..+++|+.|+++++.. +.+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+...
T Consensus 26 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~ 105 (149)
T 2je0_A 26 NSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105 (149)
T ss_dssp TCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHH
T ss_pred CCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHH
Confidence 44455 56788889999999999996553 556788999999999999998678777889999999999999986432
Q ss_pred hhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 80 VREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
...+..+++|+.+++++|.+++.++
T Consensus 106 ~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 106 IEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp HGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred HHHHhhCCCCCEEeCcCCcccchHH
Confidence 2358899999999999999998876
No 12
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=7.2e-14 Score=86.46 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=83.4
Q ss_pred Cceeec-CCCccccccCccccEEEeccCch---hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 3 DKFVVS-KGTTNTIKKCQLLQISWILCHLV---YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 3 ~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
+.+.+. +.+|..+..+++|+.|+++++.. ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus 32 ~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 111 (168)
T 2ell_A 32 DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111 (168)
T ss_dssp CSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSG
T ss_pred CCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcch
Confidence 344454 46777889999999999996543 45677899999999999998767777777999999999999999654
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
....+..+++|+.+++++|.+++.++
T Consensus 112 ~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 112 TLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp GGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred hHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 32358899999999999999998876
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=3.5e-13 Score=89.33 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=55.9
Q ss_pred ecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChh
Q 033463 7 VSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVR 81 (118)
Q Consensus 7 ~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~ 81 (118)
+.+..+..+..+++|++|+++++. +..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+.
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 175 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG- 175 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH-
Confidence 333344445556666666665332 22345566666666666666655444455666666666666666644332
Q ss_pred hhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 82 EFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 82 ~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.+..+++|+.|++++|.+++.++.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HhcCCccCCEEECCCCcCCccCHH
Confidence 356666666666666666666554
No 14
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=2.5e-13 Score=84.71 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=52.5
Q ss_pred ccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEE
Q 033463 19 QLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLD 93 (118)
Q Consensus 19 ~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ 93 (118)
++++.|+++++. +..+..+++|+.|++++|.++...+..+..+++|++|++++|.+.+.++. .+..+++|+.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG-VFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH-HhhCCcccCEEE
Confidence 456666666433 22345566677777777666655444456666677777777766644432 356666677777
Q ss_pred cCCCCCCCCCcC
Q 033463 94 LSWNEIDNLVVP 105 (118)
Q Consensus 94 ls~N~l~~~~~~ 105 (118)
+++|.+++.++.
T Consensus 107 l~~N~l~~~~~~ 118 (177)
T 2o6r_A 107 LDTNQLKSVPDG 118 (177)
T ss_dssp CCSSCCSCCCTT
T ss_pred CcCCcceEeCHH
Confidence 777766666654
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=2.3e-13 Score=98.36 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=63.0
Q ss_pred eeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
+.+++..+..|..+++|++|+++++. +..|.++++|++|++++|.++...+..|.++++|++|++++|.+.+..+
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence 34444445566777777777777543 3346667777777777777766555566777777777777777764443
Q ss_pred hhhhcCCCCCCEEEcCCCCCCCC
Q 033463 80 VREFDSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N~l~~~ 102 (118)
. .|+++++|+.|++++|.+++.
T Consensus 142 ~-~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 142 F-PIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp C-CCTTCTTCCEEECCSSCCCCC
T ss_pred h-hhhcCcccCeeccccCccccC
Confidence 3 367777777777777777654
No 16
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=2.7e-13 Score=86.01 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=59.0
Q ss_pred ccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEc
Q 033463 19 QLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 94 (118)
Q Consensus 19 ~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~l 94 (118)
++++.|+++++. |..+..+++|+.|++++|.++...+..+..+++|++|++++|.+.+..+. .|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCCEEEC
Confidence 466777777443 45566677777777777777766566677777777777777777754443 4777777777777
Q ss_pred CCCCCCCCCcC
Q 033463 95 SWNEIDNLVVP 105 (118)
Q Consensus 95 s~N~l~~~~~~ 105 (118)
++|.+++.++.
T Consensus 110 ~~N~l~~~~~~ 120 (193)
T 2wfh_A 110 HGNDISVVPEG 120 (193)
T ss_dssp CSSCCCBCCTT
T ss_pred CCCCCCeeChh
Confidence 77777776664
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.49 E-value=2.8e-14 Score=96.43 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=60.8
Q ss_pred CCccccccCccccEEEecc-C-----chhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhh
Q 033463 10 GTTNTIKKCQLLQISWILC-H-----LVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREF 83 (118)
Q Consensus 10 ~~p~~~~~l~~L~~L~l~~-~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~ 83 (118)
.+|..+..+++|++|++++ + .|+.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~ 145 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SI 145 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HH
Confidence 4566667777777777663 2 255566667777777777766666666666667777777777776655554 36
Q ss_pred cCCCCCCEEEcCCCCCCCCCc
Q 033463 84 DSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 84 ~~l~~L~~l~ls~N~l~~~~~ 104 (118)
..+++|+.|++++|.+++..|
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECC
T ss_pred hcCCCCCeEECcCCcccCcCC
Confidence 666677777777776665444
No 18
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=4.9e-13 Score=84.84 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=80.1
Q ss_pred CCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhc
Q 033463 10 GTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD 84 (118)
Q Consensus 10 ~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~ 84 (118)
.+|..+..+++|+.|+++++. +..|..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+ ..|.
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~ 123 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFN 123 (193)
T ss_dssp SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTT
T ss_pred hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhh
Confidence 467889999999999999654 3457889999999999999998878889999999999999999995444 3588
Q ss_pred CCCCCCEEEcCCCCCCCC
Q 033463 85 SFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 85 ~l~~L~~l~ls~N~l~~~ 102 (118)
.+++|+.+++++|.+...
T Consensus 124 ~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 124 DLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCTTCCEEECCSSCEECS
T ss_pred cCccccEEEeCCCCeecC
Confidence 999999999999998764
No 19
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=2.4e-13 Score=93.45 Aligned_cols=94 Identities=18% Similarity=0.128 Sum_probs=59.5
Q ss_pred Cccccc-cCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhc
Q 033463 11 TTNTIK-KCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD 84 (118)
Q Consensus 11 ~p~~~~-~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~ 84 (118)
.+..+. .+++|+.|+++++. +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+. .|.
T Consensus 55 ~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~ 133 (361)
T 2xot_A 55 RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN-AFE 133 (361)
T ss_dssp CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTT
T ss_pred ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH-HhC
Confidence 334444 66677777776443 23456667777777777777655555566677777777777777644333 366
Q ss_pred CCCCCCEEEcCCCCCCCCCcC
Q 033463 85 SFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 85 ~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.+++|+.|++++|.+++.+..
T Consensus 134 ~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp TCTTCCEEECCSSCCCSCCGG
T ss_pred CcccCCEEECCCCcCCeeCHH
Confidence 677777777777777766554
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.48 E-value=2.6e-13 Score=95.17 Aligned_cols=100 Identities=18% Similarity=0.086 Sum_probs=73.2
Q ss_pred eecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCCh
Q 033463 6 VVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV 80 (118)
Q Consensus 6 ~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~ 80 (118)
.+.+..|..+..+++|+.|+++++. +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+.
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence 3344456667778888888887543 44666778888888888888776677777788888888888888755554
Q ss_pred hhhcCCCCCCEEEcCCCCCCCCCcCC
Q 033463 81 REFDSFNNLEVLDLSWNEIDNLVVPQ 106 (118)
Q Consensus 81 ~~~~~l~~L~~l~ls~N~l~~~~~~~ 106 (118)
.+..+++|+.|++++|++++.++..
T Consensus 366 -~~~~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 366 -SFLGLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp -TTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -hccccccccEEECCCCccccCCHhH
Confidence 4777888888888888888777653
No 21
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=2.5e-13 Score=87.68 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=84.4
Q ss_pred CceeecCCCccccccCccccEEEeccCc----h-hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC
Q 033463 3 DKFVVSKGTTNTIKKCQLLQISWILCHL----V-YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 77 (118)
Q Consensus 3 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~----~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~ 77 (118)
+.+.++...|..+..+++|++|+++++. + ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 64 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 64 SNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp CSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence 4455666678889999999999999665 3 3467899999999999999988888899999999999999999966
Q ss_pred CChhhhcCCCCCCEEEcCCCCCCCC
Q 033463 78 FDVREFDSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~l~~~ 102 (118)
.+. .|..+++|+.+++++|.+...
T Consensus 144 ~~~-~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 144 AKG-TFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CTT-TTTTCTTCCEEECCSSCEECS
T ss_pred CHH-HHhCCCCCCEEEeCCCCcCCC
Confidence 654 589999999999999998653
No 22
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=2.9e-13 Score=85.68 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=83.5
Q ss_pred eeecCCCcc-ccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 5 FVVSKGTTN-TIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 5 ~~~~~~~p~-~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
+.+....+. .+..+++|+.|+++++. +..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 39 n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 118 (192)
T 1w8a_A 39 NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118 (192)
T ss_dssp CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC
Confidence 344444443 38899999999999654 567888999999999999999887878999999999999999999776
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
+. .+..+++|+.+++++|.+++..+
T Consensus 119 ~~-~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 119 PG-SFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TT-SSTTCTTCCEEECTTCCBCCSGG
T ss_pred HH-HhhcCCCCCEEEeCCCCccCcCc
Confidence 65 58999999999999999998654
No 23
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=8.1e-13 Score=87.44 Aligned_cols=94 Identities=22% Similarity=0.290 Sum_probs=42.4
Q ss_pred CCCccccccCccccEEEeccCc----h-hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhh
Q 033463 9 KGTTNTIKKCQLLQISWILCHL----V-YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREF 83 (118)
Q Consensus 9 ~~~p~~~~~l~~L~~L~l~~~~----~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~ 83 (118)
...+..+..+++|++|+++++. + ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+. .|
T Consensus 51 ~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~ 129 (270)
T 2o6q_A 51 SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR-VF 129 (270)
T ss_dssp CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT-TT
T ss_pred eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH-Hh
Confidence 3333445555566666655332 1 1233445555555555555443333344444455555554444433222 24
Q ss_pred cCCCCCCEEEcCCCCCCCCC
Q 033463 84 DSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 84 ~~l~~L~~l~ls~N~l~~~~ 103 (118)
..+++|+.|++++|.+++.+
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCC
T ss_pred CcCcCCCEEECCCCcCCccC
Confidence 44444444444444444433
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=1.1e-12 Score=86.87 Aligned_cols=70 Identities=26% Similarity=0.324 Sum_probs=33.4
Q ss_pred cCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 35 TGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 35 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. .|..+++|+.|++++|.+++.++.
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG-AFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh-HhccCCCcCEEECCCCcCCcCCHH
Confidence 3444445555555544433333344455555555555555433322 244555555555555555554443
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=4.5e-13 Score=96.77 Aligned_cols=109 Identities=20% Similarity=0.200 Sum_probs=87.0
Q ss_pred eecCCCccccccCccccEEEeccCc------hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 6 VVSKGTTNTIKKCQLLQISWILCHL------VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 6 ~~~~~~p~~~~~l~~L~~L~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
.+....+..+..++.++.++++++. |..+..+++|+.|++++|.+++..|..+..+++|++|++++|++.+..+
T Consensus 456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 3444556667778888899888552 4567888999999999999998888889999999999999999996666
Q ss_pred hhhhcCCCCCCEEEcCCCCCCCCCcCCC----CCcceEEE
Q 033463 80 VREFDSFNNLEVLDLSWNEIDNLVVPQG----KQLKCYLI 115 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N~l~~~~~~~~----~~l~~~~~ 115 (118)
. .|..+++|+.|++++|++++.++... ..++.+.+
T Consensus 536 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 536 F-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp G-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred h-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 4 58899999999999999999888643 34554444
No 26
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=7.8e-13 Score=82.30 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=74.4
Q ss_pred CccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcC
Q 033463 11 TTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDS 85 (118)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~ 85 (118)
+|..+ .++++.|+++++. +..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+. .|..
T Consensus 24 ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~ 100 (170)
T 3g39_A 24 VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG-AFDN 100 (170)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTT
T ss_pred cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHH-HhcC
Confidence 55544 3788999998554 45678899999999999999977666778999999999999999965553 4888
Q ss_pred CCCCCEEEcCCCCCCCCCc
Q 033463 86 FNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 86 l~~L~~l~ls~N~l~~~~~ 104 (118)
+++|+.+++++|.++...+
T Consensus 101 l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 101 LKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CTTCCEEECCSSCBCTTBG
T ss_pred CCCCCEEEeCCCCCCCCch
Confidence 9999999999999987754
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.46 E-value=5.5e-13 Score=88.70 Aligned_cols=67 Identities=27% Similarity=0.311 Sum_probs=26.6
Q ss_pred cCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCC
Q 033463 35 TGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 35 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~ 102 (118)
..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++.
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-TFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCEE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh-HhccCCCccEEECCCCccccc
Confidence 3344444444444444433333334444444444444444422221 233344444444444444433
No 28
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=1.3e-12 Score=83.35 Aligned_cols=101 Identities=20% Similarity=0.144 Sum_probs=82.4
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
.+.+.+..+..+..+++|++|+++++. +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 61 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 61 GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 444555555567899999999999654 234678999999999999999776667889999999999999999655
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
+. .+..+++|+.+++++|.+.+..+.
T Consensus 141 ~~-~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 141 DG-VFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp TT-TTTTCTTCCEEECCSCCBCCCTTT
T ss_pred HH-HhccCCCccEEEecCCCeecCCCC
Confidence 53 488899999999999998876653
No 29
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=9.3e-13 Score=82.33 Aligned_cols=92 Identities=22% Similarity=0.185 Sum_probs=74.1
Q ss_pred CCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhc
Q 033463 10 GTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD 84 (118)
Q Consensus 10 ~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~ 84 (118)
.+|..+. ++|+.|+++++. +..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.++. .|.
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~ 102 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG-AFD 102 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH-Hhc
Confidence 4555543 788999998554 45677899999999999999876566678899999999999999965553 488
Q ss_pred CCCCCCEEEcCCCCCCCCCc
Q 033463 85 SFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 85 ~l~~L~~l~ls~N~l~~~~~ 104 (118)
.+++|+.+++++|.+...+.
T Consensus 103 ~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 103 NLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TCTTCSEEECCSSCBCTTBG
T ss_pred cccCCCEEEeCCCCcccccc
Confidence 89999999999999887764
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.45 E-value=1.2e-13 Score=93.34 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=80.0
Q ss_pred eeecCCCccccccCccccEEEeccC-----chhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCH-----LVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
+.+.+.+|..+..+++|++|+++++ .|+.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 3455678888899999999998843 36678888889999999998887778888888889999999998886666
Q ss_pred hhhhcCCC-CCCEEEcCCCCCCCCCcC
Q 033463 80 VREFDSFN-NLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 80 ~~~~~~l~-~L~~l~ls~N~l~~~~~~ 105 (118)
. .+..++ +|+.+++++|.+++..+.
T Consensus 167 ~-~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 167 D-SYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp G-GGGCCCTTCCEEECCSSEEEEECCG
T ss_pred H-HHhhhhhcCcEEECcCCeeeccCCh
Confidence 5 377777 888888888888766554
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=4.9e-13 Score=90.22 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=70.9
Q ss_pred eeecCCCccccccCccccEEEeccCc-------hhhc--cCCCCCCEEecCCCcCCcc--cc-ccccCCCCCcEEecCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHL-------VYYF--TGLSKLKSLGLAGIKLNRS--IL-SSLTVFSSLRELHLRDT 72 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~-------~~~~--~~l~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~l~ls~n 72 (118)
+.+.+..|..+..+++|++|+++++. +..+ ..+++|+.|++++|.++.. .+ ..+..+++|++|++++|
T Consensus 159 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred CCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 34445555677777777777777554 2233 6677777888877777631 12 22346677888888888
Q ss_pred CCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcCCCCCcceEEE
Q 033463 73 GFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLI 115 (118)
Q Consensus 73 ~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~~~~~l~~~~~ 115 (118)
.+.+..+...+..+++|+.|++++|.++..+......++.+++
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~L 281 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL 281 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEEC
T ss_pred cCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEEC
Confidence 8776554334566777888888888777665554455555544
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.45 E-value=1e-12 Score=88.14 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=72.3
Q ss_pred eecCCCccccccCccccEEEeccCc------hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 6 VVSKGTTNTIKKCQLLQISWILCHL------VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 6 ~~~~~~p~~~~~l~~L~~L~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
.+....+..+..+++|+.|+++++. |..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+
T Consensus 137 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp CCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred cCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence 3444455666777777777777442 4456677888888888888877667777788888888888888875544
Q ss_pred hhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 80 VREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
. .+..+++|+.+++++|.+++.++.
T Consensus 217 ~-~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 217 F-PYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp G-GGTTCTTCCEEECTTSCCCBCSSS
T ss_pred h-hccCcccCCEeECCCCCCcccCHH
Confidence 3 477788888888888888877665
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.45 E-value=7.2e-13 Score=92.94 Aligned_cols=102 Identities=22% Similarity=0.134 Sum_probs=87.9
Q ss_pred CceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC
Q 033463 3 DKFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 77 (118)
Q Consensus 3 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~ 77 (118)
+.+.+.+..|..+..+++|+.|+++++. +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+.
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 3445556667789999999999999654 56678899999999999999988888899999999999999999965
Q ss_pred CChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 78 FDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
++. .+..+++|+.+++++|++++..+.
T Consensus 387 ~~~-~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 387 PDG-IFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTT-TTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHh-HhccCCcccEEEccCCCcccCCCc
Confidence 543 588999999999999999998774
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=1.4e-12 Score=86.40 Aligned_cols=102 Identities=19% Similarity=0.123 Sum_probs=85.1
Q ss_pred CceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC
Q 033463 3 DKFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 77 (118)
Q Consensus 3 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~ 77 (118)
..+.+.+..+..+..+++|++|+++++. +..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 3455566666668999999999999654 33467899999999999999987777788999999999999999976
Q ss_pred CChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 78 FDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.+. .+..+++|+.+++++|.+.+..+.
T Consensus 197 ~~~-~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 197 PDG-VFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CTT-TTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHH-HHhCCcCCCEEEccCCCccccCcH
Confidence 664 488999999999999999887653
No 35
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=1.1e-12 Score=95.27 Aligned_cols=98 Identities=15% Similarity=0.063 Sum_probs=83.4
Q ss_pred ceeecCCCccccccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC-
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF- 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~- 78 (118)
.+.+++ +|. +..+++|+.|+++++. |..++.+++|+.|++++|.+++ +| .+..+++|+.|++++|.+.+..
T Consensus 450 ~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~ 525 (567)
T 1dce_A 450 HKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAA 525 (567)
T ss_dssp TSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSST
T ss_pred CCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCC
Confidence 344444 565 8999999999999554 6788899999999999999997 46 7999999999999999999775
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCcCC
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVVPQ 106 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~~~ 106 (118)
|. .++.+++|+.|++++|++++.++..
T Consensus 526 p~-~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 526 IQ-PLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp TG-GGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred cH-HHhcCCCCCEEEecCCcCCCCccHH
Confidence 54 5999999999999999999988754
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.44 E-value=2.1e-12 Score=86.56 Aligned_cols=95 Identities=19% Similarity=0.139 Sum_probs=60.1
Q ss_pred CCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhc
Q 033463 10 GTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD 84 (118)
Q Consensus 10 ~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~ 84 (118)
.+|..+..+++|+.|+++.+. +..+..+++|+.|++++|.++...+..+..+++|+.|++++|++...++ ..|.
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~ 169 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLN 169 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTT
T ss_pred cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH-HHhc
Confidence 345556666667777766443 2345566777777777777765555556666777777777777764333 2466
Q ss_pred CCCCCCEEEcCCCCCCCCCcC
Q 033463 85 SFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 85 ~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.+++|+.|++++|+++..+..
T Consensus 170 ~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 170 GLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCTT
T ss_pred CcCCCCEEECCCCcCCccChh
Confidence 677777777777777766554
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.44 E-value=6.6e-13 Score=98.95 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=48.2
Q ss_pred eecCCCccccccCccccEEEeccC-----chhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCCh
Q 033463 6 VVSKGTTNTIKKCQLLQISWILCH-----LVYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV 80 (118)
Q Consensus 6 ~~~~~~p~~~~~l~~L~~L~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~ 80 (118)
.+.+..|..+..+++|+.|+++++ .|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|.
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 333444444444445555544422 233444455555555555555544455555555555555555555544443
Q ss_pred hhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 81 REFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 81 ~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
.++.+++|+.|++++|.+++..|
T Consensus 509 -~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 509 -WIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp -GGGGCTTCCEEECCSSCCEEECC
T ss_pred -HHhcCCCCCEEECCCCcccCcCC
Confidence 24555555555555555554444
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=1.6e-12 Score=86.43 Aligned_cols=110 Identities=23% Similarity=0.300 Sum_probs=81.4
Q ss_pred eeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCc-CCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIK-LNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
+.+....+..+..+++|++|+++++. +..+..+++|+.|++++|. +....+..+..+++|++|++++|.+.+..
T Consensus 42 n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 121 (285)
T 1ozn_A 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC
Confidence 33444445567788888888888553 4567778889999998886 77666777888888999999999888655
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCcCC---CCCcceEEE
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVVPQ---GKQLKCYLI 115 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~~~---~~~l~~~~~ 115 (118)
+. .+..+++|+.+++++|.+++.++.. ...++.+.+
T Consensus 122 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 122 PG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred Hh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 54 4888889999999999988877653 244555444
No 39
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=1.1e-12 Score=90.14 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=83.5
Q ss_pred CceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC
Q 033463 3 DKFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 77 (118)
Q Consensus 3 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~ 77 (118)
+.+.+....+..+..+++|++|+++++. +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 72 ~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 72 SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 3445555566779999999999999665 34577899999999999999988788899999999999999999954
Q ss_pred CChhhh---cCCCCCCEEEcCCCCCCCCCcC
Q 033463 78 FDVREF---DSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 78 ~~~~~~---~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.+ ..| ..+++|+.|++++|.+++.++.
T Consensus 152 ~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 152 PV-ELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp CG-GGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred CH-HHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 44 345 5689999999999999988753
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=1.1e-12 Score=95.28 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=46.4
Q ss_pred cccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCC
Q 033463 15 IKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNL 89 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L 89 (118)
+..+++|+.|+++++. +..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+.++. .|..+++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG-IFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH-HhccCCCC
Confidence 4455555555555332 22444555555555555555554444455555555555555555533322 24555555
Q ss_pred CEEEcCCCCCCCCCcC
Q 033463 90 EVLDLSWNEIDNLVVP 105 (118)
Q Consensus 90 ~~l~ls~N~l~~~~~~ 105 (118)
+.|++++|.+++.++.
T Consensus 150 ~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 150 TTLSMSNNNLERIEDD 165 (597)
T ss_dssp CEEECCSSCCCBCCTT
T ss_pred CEEEeeCCcCCCCChh
Confidence 5555555555555443
No 41
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=4.6e-12 Score=78.94 Aligned_cols=100 Identities=22% Similarity=0.128 Sum_probs=82.3
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
.+.+.+..+..+..+++|++|+++++. +..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+.+
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 37 SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeC
Confidence 444555555667899999999999654 234678999999999999999776667889999999999999999555
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
+ ..+..+++|+.+++++|.+.+..+
T Consensus 117 ~-~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 117 D-GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp T-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred H-HHhcCCcccCEEEecCCCeeccCc
Confidence 4 357889999999999999998765
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=1.8e-12 Score=89.55 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=49.2
Q ss_pred cccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCC
Q 033463 15 IKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNL 89 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L 89 (118)
+..+++|++|+++++. +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+...++ ..|..+++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH-HHhcCCCCC
Confidence 4555666666665332 2244555666666666666655545555556666666666666653222 234555566
Q ss_pred CEEEcCCCCCCCCCcC
Q 033463 90 EVLDLSWNEIDNLVVP 105 (118)
Q Consensus 90 ~~l~ls~N~l~~~~~~ 105 (118)
+.|++++|.+++.++.
T Consensus 144 ~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDD 159 (390)
T ss_dssp CEEECCSSCCCBCCTT
T ss_pred cEEECCCCccCccChh
Confidence 6666666655555443
No 43
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=3.4e-12 Score=82.76 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=82.8
Q ss_pred CceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC
Q 033463 3 DKFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 77 (118)
Q Consensus 3 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~ 77 (118)
+.+.+....+..+..+++|+.|+++++. +..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.
T Consensus 72 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence 4455555555667899999999999665 334678999999999999999 5688889999999999999999965
Q ss_pred CChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 78 FDVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
.+ ..+..+++|+.+++++|.+.+..+
T Consensus 151 ~~-~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 151 PH-GAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CT-TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CH-HHHhCCCCCCEEEeeCCCccCCcc
Confidence 55 358999999999999999987654
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=2.8e-12 Score=85.94 Aligned_cols=73 Identities=23% Similarity=0.184 Sum_probs=48.1
Q ss_pred hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcCC
Q 033463 33 YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 106 (118)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~~ 106 (118)
.+..+++|+.|++++|.++...+..+..+++|++|++++|++.+..+. .|..+++|+.|++++|++++.++..
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~ 167 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-LLTPTPKLEKLSLANNNLTELPAGL 167 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh-hcccccCCCEEECCCCcCCccCHHH
Confidence 344566677777777777655555666777777777777777744433 4666777777777777777666643
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.40 E-value=2.4e-12 Score=93.22 Aligned_cols=99 Identities=19% Similarity=0.109 Sum_probs=76.6
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
.+.+.+..|..+..+++|++|+++++. |..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 344555567778888888888888553 556778888888888888888777778888888888888888888543
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCC
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~ 103 (118)
+. .+.++++|+.|++++|.+++..
T Consensus 122 ~~-~~~~l~~L~~L~L~~n~l~~~~ 145 (606)
T 3t6q_A 122 FI-PLHNQKTLESLYLGSNHISSIK 145 (606)
T ss_dssp GS-CCTTCTTCCEEECCSSCCCCCC
T ss_pred cc-hhccCCcccEEECCCCcccccC
Confidence 33 4788888888888888888754
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=3.6e-12 Score=84.38 Aligned_cols=89 Identities=20% Similarity=0.202 Sum_probs=49.0
Q ss_pred ccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCC
Q 033463 12 TNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSF 86 (118)
Q Consensus 12 p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l 86 (118)
+..+..+++|++|+++++. +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+. .+..+
T Consensus 45 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l 123 (276)
T 2z62_A 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHL 123 (276)
T ss_dssp TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC-CCTTC
T ss_pred HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch-hcccC
Confidence 3355556666666666432 22345556666666666666555445555555666666666655543332 25555
Q ss_pred CCCCEEEcCCCCCCC
Q 033463 87 NNLEVLDLSWNEIDN 101 (118)
Q Consensus 87 ~~L~~l~ls~N~l~~ 101 (118)
++|+.|++++|.+++
T Consensus 124 ~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 124 KTLKELNVAHNLIQS 138 (276)
T ss_dssp TTCCEEECCSSCCCC
T ss_pred CCCCEEECcCCccce
Confidence 555566665555554
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.39 E-value=1.5e-12 Score=94.21 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=49.0
Q ss_pred ecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChh
Q 033463 7 VSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVR 81 (118)
Q Consensus 7 ~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~ 81 (118)
+.+..+..+..+++|++|+++++. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+.
T Consensus 44 l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~- 122 (606)
T 3vq2_A 44 LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF- 122 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS-
T ss_pred cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccc-
Confidence 333344455556666666665332 33445555566666665555554455555555555555555555533322
Q ss_pred hhcCCCCCCEEEcCCCCCCC
Q 033463 82 EFDSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 82 ~~~~l~~L~~l~ls~N~l~~ 101 (118)
.++++++|+.|++++|.+++
T Consensus 123 ~~~~l~~L~~L~L~~n~l~~ 142 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNFIHS 142 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCC
T ss_pred ccCCCCCCCEEeCCCCcccc
Confidence 25555555555555555543
No 48
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=2.8e-12 Score=81.30 Aligned_cols=99 Identities=15% Similarity=0.247 Sum_probs=57.6
Q ss_pred ccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCC-CCCCCChhhhcCCC
Q 033463 14 TIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTG-FKGTFDVREFDSFN 87 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~-l~~~~~~~~~~~l~ 87 (118)
.+..+++|++|+++++. +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..++
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~ 159 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLP 159 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCS
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCC
Confidence 45555666666665332 3445566666666666666665555566666666677776666 44 333 366666
Q ss_pred CCCEEEcCCCCCCCCCc-CCCCCcceEEE
Q 033463 88 NLEVLDLSWNEIDNLVV-PQGKQLKCYLI 115 (118)
Q Consensus 88 ~L~~l~ls~N~l~~~~~-~~~~~l~~~~~ 115 (118)
+|+.+++++|.+++.++ .....++.+.+
T Consensus 160 ~L~~L~l~~n~i~~~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 160 ELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188 (197)
T ss_dssp SCCEEECTTBCCCCCTTGGGCSSCCEEEE
T ss_pred CCCEEECCCCCCcChHHhccCCCCCEEEe
Confidence 67777777776666532 12344444443
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.39 E-value=2e-12 Score=93.60 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=74.1
Q ss_pred eeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCC-CC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG-TF 78 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~-~~ 78 (118)
+.+.+..|..+..+++|++|+++++. |..++.+++|++|++++|.+....+..++.+++|++|++++|.+.+ .+
T Consensus 66 n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l 145 (606)
T 3vq2_A 66 CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145 (606)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCC
T ss_pred CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceec
Confidence 34445556677788888888887443 5567778888888888888876655667788888888888888875 33
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCcCCCC
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVVPQGK 108 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~~~~~ 108 (118)
|. .++++++|+.|++++|.+++.++....
T Consensus 146 p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 146 PA-YFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp CG-GGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred hH-hHhhcCCCCEEEccCCcceecChhhhh
Confidence 44 477788888888888888877665443
No 50
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=5.8e-12 Score=79.83 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=81.5
Q ss_pred CccccccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCC
Q 033463 11 TTNTIKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFN 87 (118)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~ 87 (118)
+| .+..+++|++|+++++. ++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. .+..++
T Consensus 59 l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~ 136 (197)
T 4ezg_A 59 LT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLP 136 (197)
T ss_dssp CT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH-HHTTCS
T ss_pred hH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH-HHhhCC
Confidence 44 58889999999998554 45678899999999999999887788899999999999999999865554 588999
Q ss_pred CCCEEEcCCCC-CCCCCcC-CCCCcceEEE
Q 033463 88 NLEVLDLSWNE-IDNLVVP-QGKQLKCYLI 115 (118)
Q Consensus 88 ~L~~l~ls~N~-l~~~~~~-~~~~l~~~~~ 115 (118)
+|+.|++++|. ++..++- ....++.+.+
T Consensus 137 ~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l 166 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNI 166 (197)
T ss_dssp SCCEEECCSCTBCCCCGGGGGCSSCCEEEC
T ss_pred CCCEEEccCCCCccccHhhcCCCCCCEEEC
Confidence 99999999998 7766431 2244555443
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.38 E-value=1.6e-12 Score=88.45 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=27.1
Q ss_pred CCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 37 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 37 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+.++ .+..+++|+.|++++|++.+..|
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG--GGGGCTTCCEEECTTCTTCCBCC
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch--hhccCCCCCEEECcCCcchhhhH
Confidence 344444444444443 233334444444444444444443222 24444444444444444444333
No 52
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=5.7e-12 Score=85.88 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=73.3
Q ss_pred CCccccccCccccEEEecc-Cc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhh
Q 033463 10 GTTNTIKKCQLLQISWILC-HL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREF 83 (118)
Q Consensus 10 ~~p~~~~~l~~L~~L~l~~-~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~ 83 (118)
.+|. +..+++|+.|++++ +. +..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++.+.++. .|
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK-TV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST-TT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH-Hc
Confidence 3677 88888999999985 54 35677889999999999999988777888999999999999999865553 46
Q ss_pred cCCCCCCEEEcCCCCCCCCC
Q 033463 84 DSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 84 ~~l~~L~~l~ls~N~l~~~~ 103 (118)
..+. |+.|++.+|.+....
T Consensus 101 ~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 101 QGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp CSCC-CCEEECCSSCCCCCG
T ss_pred ccCC-ceEEEeeCCCccCCC
Confidence 6555 999999999887643
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=2.5e-12 Score=90.86 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=50.7
Q ss_pred CCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhh
Q 033463 9 KGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREF 83 (118)
Q Consensus 9 ~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~ 83 (118)
+..|..+..+++|++|+++++. +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+. .|
T Consensus 46 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~ 124 (477)
T 2id5_A 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MF 124 (477)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TT
T ss_pred eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-Hc
Confidence 3334455556666666665332 34455556666666666655544334455555666666666655543332 35
Q ss_pred cCCCCCCEEEcCCCCCCCCCc
Q 033463 84 DSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 84 ~~l~~L~~l~ls~N~l~~~~~ 104 (118)
..+++|+.|++++|.+++..+
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECT
T ss_pred cccccCCEEECCCCccceeCh
Confidence 555555555555555555443
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.37 E-value=2.6e-12 Score=85.07 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=77.3
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC-
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT- 77 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~- 77 (118)
.+.+.+..+..+..+++|++|+++++. +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.
T Consensus 61 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 140 (276)
T 2z62_A 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec
Confidence 334444455678888899999998654 35677888899999999888876665688888899999999988853
Q ss_pred CChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 78 FDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.+. .+..+++|+.|++++|.+++.++.
T Consensus 141 l~~-~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 141 LPE-YFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCEECGG
T ss_pred Cch-hhccCCCCCEEECCCCCCCcCCHH
Confidence 344 488888899999998888877654
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.37 E-value=3.7e-12 Score=88.04 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=78.8
Q ss_pred eeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
+.+....+..+..+++|++|+++++. +..++.+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus 79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 33444455677888888888888543 3456778888888888888875544446778888888888888885554
Q ss_pred hhhhcCCCCCCEEEcCCCCCCCCCcCCCCCcceEEE
Q 033463 80 VREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLI 115 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N~l~~~~~~~~~~l~~~~~ 115 (118)
. .+..+++|+.|++++|.+++.+......++.+.+
T Consensus 159 ~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 159 D-TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193 (390)
T ss_dssp T-TTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEEC
T ss_pred h-hccCCCCCCEEECCCCcCCccccccccccceeec
Confidence 3 4788888888888888888776655555555443
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=2.9e-12 Score=93.17 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=86.0
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
.+.+....|..+..+++|++|+++++. +..++.+++|+.|++++|.+....+..+..+++|++|++++|.+.+..
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 344555566688889999999998553 445678899999999999988665555788899999999999998666
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCcCCCCCcceEEE
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLI 115 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~~~~~~l~~~~~ 115 (118)
+. .|..+++|+.|++++|.+++.+......++.+.+
T Consensus 164 ~~-~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l 199 (597)
T 3oja_B 164 DD-TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199 (597)
T ss_dssp TT-TTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEEC
T ss_pred hh-hhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhc
Confidence 54 4888899999999999998887666666665544
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.37 E-value=6.1e-12 Score=92.23 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=59.7
Q ss_pred eecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCCh
Q 033463 6 VVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV 80 (118)
Q Consensus 6 ~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~ 80 (118)
.+.+..+..+..+++|++|+++++. +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+.
T Consensus 36 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 115 (680)
T 1ziw_A 36 QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115 (680)
T ss_dssp CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSC
T ss_pred CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChh
Confidence 3444444556667777777776432 34455666666677666666654444566666666666666666644433
Q ss_pred hhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 81 REFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 81 ~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.|+++++|++|++++|.+++.++.
T Consensus 116 -~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 116 -PFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp -TTTTCTTCCEEECCSSCCSCCCCC
T ss_pred -HccccCCCCEEECCCCcccccCch
Confidence 366666666666666666665544
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.36 E-value=5.5e-13 Score=97.68 Aligned_cols=97 Identities=7% Similarity=0.185 Sum_probs=66.9
Q ss_pred eecCCCccccccCccccEEEeccC----------------------chhhcc--CCCCCCEEecCCCcCCccccccccCC
Q 033463 6 VVSKGTTNTIKKCQLLQISWILCH----------------------LVYYFT--GLSKLKSLGLAGIKLNRSILSSLTVF 61 (118)
Q Consensus 6 ~~~~~~p~~~~~l~~L~~L~l~~~----------------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l 61 (118)
.+++ +|..+.++++|++|+++++ .|+.++ .+++|++|++++|.+.+..|..+..+
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3444 6777777777777777732 455555 77777777777777777777777777
Q ss_pred CCCcEEecCCCC-CCC-CCChhhhcCC------CCCCEEEcCCCCCCCCCc
Q 033463 62 SSLRELHLRDTG-FKG-TFDVREFDSF------NNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 62 ~~L~~l~ls~n~-l~~-~~~~~~~~~l------~~L~~l~ls~N~l~~~~~ 104 (118)
++|++|++++|. +.+ .+|.. ++.+ ++|+.|++++|.++..+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPV 322 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred CCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCccCc
Confidence 777777777777 665 45542 5444 777777777777775544
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.36 E-value=4.3e-12 Score=95.46 Aligned_cols=112 Identities=22% Similarity=0.175 Sum_probs=81.0
Q ss_pred eeecCCCccccccCccccEEEeccCc------hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHL------VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
+.+....|..+..+++|++|+++++. +..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus 34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 113 (844)
T 3j0a_A 34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113 (844)
T ss_dssp CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence 44455567778888888888888552 556778888888888888888777888888888888888888887644
Q ss_pred Ch-hhhcCCCCCCEEEcCCCCCCCCCcC----CCCCcceEEEe
Q 033463 79 DV-REFDSFNNLEVLDLSWNEIDNLVVP----QGKQLKCYLIT 116 (118)
Q Consensus 79 ~~-~~~~~l~~L~~l~ls~N~l~~~~~~----~~~~l~~~~~~ 116 (118)
+. ..+.++++|+.|++++|.+++..+. ....|+.+.++
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 32 2377788888888888888776542 23455555543
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.35 E-value=5.5e-12 Score=90.52 Aligned_cols=91 Identities=22% Similarity=0.236 Sum_probs=53.3
Q ss_pred ccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCC-ccccccccCCCCCcEEecCCCCCCCCCChhhhcCCC
Q 033463 14 TIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLN-RSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFN 87 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~ 87 (118)
.+..+++|++|+++++. +..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+.+..+. .+..++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~ 494 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLS 494 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhccc
Confidence 45566666666666332 344555666666666666654 34555566666666666666666644343 355666
Q ss_pred CCCEEEcCCCCCCCCCcC
Q 033463 88 NLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 88 ~L~~l~ls~N~l~~~~~~ 105 (118)
+|+.+++++|.+++.++.
T Consensus 495 ~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp TCCEEECCSSCCSCCCTT
T ss_pred CCCEEeCCCCcCCCCCHH
Confidence 666666666666665554
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=6.5e-12 Score=84.20 Aligned_cols=102 Identities=23% Similarity=0.198 Sum_probs=71.8
Q ss_pred cccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCc-cccccccCCCCCcEEecCCCCCCCCCChhhhcCC
Q 033463 13 NTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNR-SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSF 86 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l 86 (118)
..+..+++|++|+++++. +..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.+..+. .+..+
T Consensus 120 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l 198 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSL 198 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTC
T ss_pred hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCC
Confidence 456677777777777443 3446677888888888888765 4566777888888888888888865454 47778
Q ss_pred CCCCEEEcCCCCCCCCCcCC---CCCcceEEE
Q 033463 87 NNLEVLDLSWNEIDNLVVPQ---GKQLKCYLI 115 (118)
Q Consensus 87 ~~L~~l~ls~N~l~~~~~~~---~~~l~~~~~ 115 (118)
++|+.|++++|.+++.++.. ...++.+.+
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 88888888888888776532 234444443
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.35 E-value=3.7e-12 Score=91.17 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=28.9
Q ss_pred ccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCC
Q 033463 34 FTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEID 100 (118)
Q Consensus 34 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~ 100 (118)
+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .++++++|+.|++++|.++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCTTCCEEECTTCCCS
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-HhccCCCCcEEECCCCccc
Confidence 34444444444444444443334444444444444444444433222 2444444444444444444
No 63
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.34 E-value=5.6e-12 Score=89.08 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=63.5
Q ss_pred eeecCCCccccccCccccEEEeccCc----h-hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHL----V-YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~----~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
+.+....|..+..+++|++|+++++. + ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus 66 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence 34444556677777788888777443 2 235567777777777777776666666667777777777777664443
Q ss_pred hhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 80 VREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
. .|.++++|+.|++++|.+++.++
T Consensus 146 ~-~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 146 R-AFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp T-SSTTCTTCCEEEEESCCCSSCCH
T ss_pred h-hccCCCCCCEEECCCCcCcccCh
Confidence 3 36666666666666666665543
No 64
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=1.8e-12 Score=96.34 Aligned_cols=89 Identities=19% Similarity=0.133 Sum_probs=41.9
Q ss_pred ccccccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCC
Q 033463 12 TNTIKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFN 87 (118)
Q Consensus 12 p~~~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~ 87 (118)
|..+..++.|+.|+++++. +..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. .+|. .++.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA-ELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS-SGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh-hhcCCC
Confidence 4445555555555555322 333444555555555555555 34444555555555555555555 3332 245555
Q ss_pred CCCEEEcCCCCCCCCC
Q 033463 88 NLEVLDLSWNEIDNLV 103 (118)
Q Consensus 88 ~L~~l~ls~N~l~~~~ 103 (118)
+|+.|+|++|.++.++
T Consensus 294 ~L~~L~L~~N~l~~lp 309 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLP 309 (727)
T ss_dssp TCSEEECCSSCCCCCC
T ss_pred CCCEEECCCCCCCccC
Confidence 5555555555555443
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.33 E-value=6.3e-12 Score=85.88 Aligned_cols=84 Identities=18% Similarity=0.097 Sum_probs=40.8
Q ss_pred cccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEc
Q 033463 20 LLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 94 (118)
Q Consensus 20 ~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~l 94 (118)
++++|+++++. +..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+.++++|+.|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-HHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-hHhCCCccCCEEEC
Confidence 45555555332 1134445555555555555554444445555555555555555553222 22455555555555
Q ss_pred CCCCCCCCCc
Q 033463 95 SWNEIDNLVV 104 (118)
Q Consensus 95 s~N~l~~~~~ 104 (118)
++|.+++.+.
T Consensus 132 ~~n~l~~l~~ 141 (353)
T 2z80_A 132 LGNPYKTLGE 141 (353)
T ss_dssp TTCCCSSSCS
T ss_pred CCCCCcccCc
Confidence 5555554443
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.33 E-value=1.5e-11 Score=88.59 Aligned_cols=97 Identities=22% Similarity=0.184 Sum_probs=63.6
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
.+.+.+..|..+..+++|++|+++++. ++.+..+++|++|++++|.++. +|.. .+++|++|++++|.+.+..
T Consensus 61 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLP 137 (562)
T ss_dssp SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCC
T ss_pred CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccC
Confidence 344555555667777777777777443 4456667777777777777763 3443 6777777777777777432
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCC
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~ 103 (118)
....|+++++|+.|++++|.+++..
T Consensus 138 ~p~~~~~l~~L~~L~L~~n~l~~~~ 162 (562)
T 3a79_B 138 VCKEFGNLTKLTFLGLSAAKFRQLD 162 (562)
T ss_dssp CCGGGGGCTTCCEEEEECSBCCTTT
T ss_pred chHhhcccCcccEEecCCCccccCc
Confidence 1124777777777777777776643
No 67
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=7e-12 Score=78.13 Aligned_cols=85 Identities=19% Similarity=0.106 Sum_probs=52.8
Q ss_pred cccEEEeccCch---hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCC
Q 033463 20 LLQISWILCHLV---YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 96 (118)
Q Consensus 20 ~L~~L~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~ 96 (118)
+|++|+++++.. +.+..+++|+.|++++|.++...+..+..+++|++|++++|.+........+..+++|+.+++++
T Consensus 43 ~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp CCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC
Confidence 677777765442 34455667777777777776543333466677777777777776333222466677777777777
Q ss_pred CCCCCCCc
Q 033463 97 NEIDNLVV 104 (118)
Q Consensus 97 N~l~~~~~ 104 (118)
|.++..+.
T Consensus 123 N~i~~~~~ 130 (176)
T 1a9n_A 123 NPVTNKKH 130 (176)
T ss_dssp SGGGGSTT
T ss_pred CCCCCcHh
Confidence 77765543
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.32 E-value=1.4e-11 Score=88.33 Aligned_cols=101 Identities=20% Similarity=0.162 Sum_probs=81.8
Q ss_pred ceeecCCCccccccCccccEEEeccCc------hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL------VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 77 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~ 77 (118)
.+.+....|..+..+++|+.|+++++. |..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 344455577778889999999998543 55677889999999999999887788888899999999999999866
Q ss_pred CChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 78 FDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
++. .+.++++|+.+++++|++++..+.
T Consensus 510 ~~~-~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 510 PDG-IFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTT-TTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHH-HhhcccCCcEEEecCCcccCCCcc
Confidence 554 488889999999999999887664
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=9.6e-12 Score=87.34 Aligned_cols=93 Identities=19% Similarity=0.161 Sum_probs=68.7
Q ss_pred ccccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCC
Q 033463 14 TIKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE 90 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~ 90 (118)
.+..+++|++|+++++. .+.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .|..+++|+
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 258 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLV 258 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-SSTTCTTCC
T ss_pred hhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh-hhcCCCCCC
Confidence 45566667777776443 22355667788888888888877777788888888888888888855554 488888888
Q ss_pred EEEcCCCCCCCCCcCCC
Q 033463 91 VLDLSWNEIDNLVVPQG 107 (118)
Q Consensus 91 ~l~ls~N~l~~~~~~~~ 107 (118)
.|++++|++++.++...
T Consensus 259 ~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLF 275 (440)
T ss_dssp EEECTTSCCCCCCTTTT
T ss_pred EEECCCCCCCccChhHh
Confidence 88998888888877643
No 70
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.32 E-value=9e-12 Score=91.34 Aligned_cols=101 Identities=21% Similarity=0.126 Sum_probs=77.6
Q ss_pred ceeecCCCccccccCccccEEEeccCc----hh-hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL----VY-YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~----~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
.+.+.+..|..+..+++|++|+++++. ++ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus 58 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp SSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC
Confidence 344556667778888888999888543 33 4777888888888888888766677888888888888888888665
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
+. .+.++++|+.|++++|.+++.++.
T Consensus 138 ~~-~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 138 LG-TQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CC-SSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ch-hhcccccCCEEEccCCcccccCHH
Confidence 54 477788888888888888877654
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.32 E-value=1.2e-11 Score=88.20 Aligned_cols=91 Identities=25% Similarity=0.253 Sum_probs=46.8
Q ss_pred ecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC-CCh
Q 033463 7 VSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT-FDV 80 (118)
Q Consensus 7 ~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~-~~~ 80 (118)
+.+..|..+..+++|++|+++++. |+.+..+++|++|++++|.++. +|.. .+++|++|++++|.+.+. .|.
T Consensus 33 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~ 109 (520)
T 2z7x_B 33 ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICK 109 (520)
T ss_dssp CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCG
T ss_pred ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchh
Confidence 333344455555555555555332 3345555555555555555552 3332 455555555555555532 222
Q ss_pred hhhcCCCCCCEEEcCCCCCCC
Q 033463 81 REFDSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 81 ~~~~~l~~L~~l~ls~N~l~~ 101 (118)
.++++++|+.|++++|.+++
T Consensus 110 -~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 110 -EFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp -GGGGCTTCCEEEEEESSCCG
T ss_pred -hhccCCcceEEEecCcccch
Confidence 35555556666665555554
No 72
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.31 E-value=1.5e-11 Score=88.98 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=48.4
Q ss_pred CCccccccCccccEEEeccCch--------hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChh
Q 033463 10 GTTNTIKKCQLLQISWILCHLV--------YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVR 81 (118)
Q Consensus 10 ~~p~~~~~l~~L~~L~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~ 81 (118)
..|..+..+++|++|+++++.. ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+.
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 518 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE- 518 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG-
T ss_pred cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh-
Confidence 3444445555555555553321 2244455555555555555554455555555555555555555544433
Q ss_pred hhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 82 EFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 82 ~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.+..+++| .+++++|++++.++.
T Consensus 519 ~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp GGTTCCSC-EEECCSSCCCCCCGG
T ss_pred HhCccccc-EEECcCCcccccCHh
Confidence 35555555 555555555555543
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.31 E-value=1e-11 Score=87.50 Aligned_cols=65 Identities=26% Similarity=0.301 Sum_probs=29.5
Q ss_pred CccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCC
Q 033463 11 TTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFK 75 (118)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~ 75 (118)
.|..+..+++|+.|+++++. +..+..+++|+.|++++|.++...+..+..+++|++|++++|.+.
T Consensus 91 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 91 QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 34444445555555554332 223344444555555555444333333444444444444444444
No 74
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.31 E-value=3.1e-12 Score=93.71 Aligned_cols=93 Identities=14% Similarity=0.273 Sum_probs=82.1
Q ss_pred Cccccc--cCccccEEEeccC-----chhhccCCCCCCEEecCCCc-CCc-cccccccCC------CCCcEEecCCCCCC
Q 033463 11 TTNTIK--KCQLLQISWILCH-----LVYYFTGLSKLKSLGLAGIK-LNR-SILSSLTVF------SSLRELHLRDTGFK 75 (118)
Q Consensus 11 ~p~~~~--~l~~L~~L~l~~~-----~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~l~ls~n~l~ 75 (118)
+|+.+. .+++|++|+++++ .|+.++.+++|+.|++++|. +++ ..|..+..+ ++|++|++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 899998 9999999999854 47889999999999999998 998 788888776 99999999999999
Q ss_pred CCCCh-hhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 76 GTFDV-REFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 76 ~~~~~-~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
.+|. ..++++++|+.|++++|.++|..|
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 6664 249999999999999999996666
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=3.4e-12 Score=85.94 Aligned_cols=109 Identities=10% Similarity=0.073 Sum_probs=64.7
Q ss_pred eeecCCCccccccCccccEEEeccCch---------hhccCCCCCCEEecCCCcCCccccc----cccCCCCCcEEecCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHLV---------YYFTGLSKLKSLGLAGIKLNRSILS----SLTVFSSLRELHLRD 71 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~l~ls~ 71 (118)
+.+....|..+..+++|++|+++++.. ..++.+++|++|++++|.++.. +. .+..+++|++|++++
T Consensus 155 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 155 AHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTT
T ss_pred CCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCC
Confidence 344455556677777777777775531 1124566777777777776532 21 134567777777777
Q ss_pred CCCCCCCChhhhcCC---CCCCEEEcCCCCCCCCCcCCCCCcceEEE
Q 033463 72 TGFKGTFDVREFDSF---NNLEVLDLSWNEIDNLVVPQGKQLKCYLI 115 (118)
Q Consensus 72 n~l~~~~~~~~~~~l---~~L~~l~ls~N~l~~~~~~~~~~l~~~~~ 115 (118)
|.+.+..|. .+..+ ++|+.|++++|+++..+......++.+.+
T Consensus 234 N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~L 279 (310)
T 4glp_A 234 NSLRATVNP-SAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDL 279 (310)
T ss_dssp SCCCCCCCS-CCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEEC
T ss_pred CCCCccchh-hHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEEC
Confidence 777755332 23333 57777777777777665555555555544
No 76
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=3.3e-11 Score=74.91 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=74.7
Q ss_pred ccEEEeccCchhhcc--CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCC
Q 033463 21 LQISWILCHLVYYFT--GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNE 98 (118)
Q Consensus 21 L~~L~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~ 98 (118)
.+.++++++....+. -.++++.|++++|.+++..|..+..+++|++|++++|.+.+..+. .|..+++|+.|++++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG-VFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh-hccCCCCCCEEECCCCc
Confidence 467888855433322 147899999999999988888899999999999999999965554 58899999999999999
Q ss_pred CCCCCcCCC---CCcceEEE
Q 033463 99 IDNLVVPQG---KQLKCYLI 115 (118)
Q Consensus 99 l~~~~~~~~---~~l~~~~~ 115 (118)
+++.++... ..++.+.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEEC
T ss_pred cCEeCHHHhcCCCCCCEEEe
Confidence 999988643 34444443
No 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.30 E-value=1.6e-11 Score=86.27 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=32.0
Q ss_pred CccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCC
Q 033463 11 TTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFK 75 (118)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~ 75 (118)
.+..+..+++|+.|+++++. +..+.++++|+.|++++|.++...+..+..+++|++|++++|.+.
T Consensus 80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 33445555555555555332 233444555555555555555433334445555555555555544
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.30 E-value=2.2e-11 Score=85.77 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=56.3
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF 78 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~ 78 (118)
.+.+....|..+..+++|++|+++++. +..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+.+
T Consensus 108 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence 344455556677778888888887543 233666777888888887777554444555555555555553322233
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCC
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~ 102 (118)
+...|.++++|+.|++++|.+++.
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC
T ss_pred ChhhccCCCCCCEEECCCCccccc
Confidence 322344444444444444444443
No 79
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=4e-11 Score=74.87 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=73.1
Q ss_pred cEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCC
Q 033463 22 QISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 97 (118)
Q Consensus 22 ~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N 97 (118)
+.++++++. |..+ .++++.|++++|.+.+..|..+..+++|++|++++|++.+.++. .|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG-VFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh-HhCCcchhhEEECCCC
Confidence 567777544 3333 37899999999999988888899999999999999999965553 5889999999999999
Q ss_pred CCCCCCcCCC---CCcceEEE
Q 033463 98 EIDNLVVPQG---KQLKCYLI 115 (118)
Q Consensus 98 ~l~~~~~~~~---~~l~~~~~ 115 (118)
++++.++... ..++.+.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEEC
T ss_pred ccceeCHHHhccccCCCEEEe
Confidence 9999887633 34554443
No 80
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.28 E-value=8e-11 Score=80.41 Aligned_cols=111 Identities=19% Similarity=0.149 Sum_probs=86.1
Q ss_pred eeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
+.+.+..+..+..+++|+.|+++++. +..+..+++|++|++++|.++...+..+..+++|++|++++|.+.....
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 141 (353)
T 2z80_A 62 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS
T ss_pred CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc
Confidence 34444445578999999999999654 4568889999999999999997656568999999999999999995444
Q ss_pred hhhhcCCCCCCEEEcCCC-CCCCCCcCCC---CCcceEEE
Q 033463 80 VREFDSFNNLEVLDLSWN-EIDNLVVPQG---KQLKCYLI 115 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N-~l~~~~~~~~---~~l~~~~~ 115 (118)
...+..+++|+.+++++| .+++.++... ..++.+.+
T Consensus 142 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 235889999999999999 5777766543 34454444
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.28 E-value=6e-12 Score=90.12 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=73.6
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC-
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT- 77 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~- 77 (118)
.+.+.+..|..+..+++|++|+++++. ++.+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+.
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 344555567778888899999888554 45677888888889888888877666688888888888888888753
Q ss_pred CChhhhcCCCCCCEEEcCCCC-CCCCC
Q 033463 78 FDVREFDSFNNLEVLDLSWNE-IDNLV 103 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~-l~~~~ 103 (118)
.+. .++++++|+.|++++|. +...+
T Consensus 115 ~~~-~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 115 VTS-LFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp SSC-SCTTCTTCCEEEEEESSSCCEEC
T ss_pred hhh-hhhccCCccEEECCCCccccccC
Confidence 222 47778888888888887 34343
No 82
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=1.3e-11 Score=76.16 Aligned_cols=93 Identities=22% Similarity=0.143 Sum_probs=77.5
Q ss_pred cccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccc-cccccCCCCCcEEecCCCCCCCCCC--hhhhc
Q 033463 13 NTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSI-LSSLTVFSSLRELHLRDTGFKGTFD--VREFD 84 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~ls~n~l~~~~~--~~~~~ 84 (118)
..+..+++|++|+++++. +..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..+ ...+.
T Consensus 65 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 144 (168)
T 2ell_A 65 SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144 (168)
T ss_dssp SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT
T ss_pred hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH
Confidence 678889999999999554 445566999999999999998742 3678899999999999999996655 13588
Q ss_pred CCCCCCEEEcCCCCCCCCCcC
Q 033463 85 SFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 85 ~l~~L~~l~ls~N~l~~~~~~ 105 (118)
.+++|+.+++++|.+...+.+
T Consensus 145 ~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 145 LLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp TCSSCCEETTEETTSCBCCSS
T ss_pred hCccCcEecCCCCChhhcccc
Confidence 999999999999999887654
No 83
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.28 E-value=4.9e-11 Score=80.73 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=57.1
Q ss_pred eecCCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCC---------------------cccccccc
Q 033463 6 VVSKGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLN---------------------RSILSSLT 59 (118)
Q Consensus 6 ~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~---------------------~~~~~~~~ 59 (118)
.+....+..+..+++|++|+++++. |..+..+++|++|++++|.+. ...+..+.
T Consensus 63 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~ 142 (330)
T 1xku_A 63 KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 142 (330)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHT
T ss_pred cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhc
Confidence 3344344456666666666666332 344555666666666666554 33333345
Q ss_pred CCCCCcEEecCCCCCCC--CCChhhhcCCCCCCEEEcCCCCCCCCCcCCCCCcceEE
Q 033463 60 VFSSLRELHLRDTGFKG--TFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYL 114 (118)
Q Consensus 60 ~l~~L~~l~ls~n~l~~--~~~~~~~~~l~~L~~l~ls~N~l~~~~~~~~~~l~~~~ 114 (118)
.+++|+.+++++|.+.. ..+ ..+..+++|+.+++++|.+++.+......++.+.
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~ 198 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEE
T ss_pred CCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccccCCccccccCCEEE
Confidence 55556666666665542 222 2355566666666666666655544444444443
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.28 E-value=2.9e-11 Score=87.13 Aligned_cols=87 Identities=17% Similarity=0.085 Sum_probs=43.1
Q ss_pred ccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCc--cccccccCCCCCcEEecCCCCCCCCCChhhhcCCCC
Q 033463 16 KKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNR--SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNN 88 (118)
Q Consensus 16 ~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~ 88 (118)
..+++|++|+++++. +..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+.+..+...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 344555555555332 3444555556666666555554 223345555555556665555554233223444444
Q ss_pred CCEEEcCCCCCCCC
Q 033463 89 LEVLDLSWNEIDNL 102 (118)
Q Consensus 89 L~~l~ls~N~l~~~ 102 (118)
|+.+++++|.+++.
T Consensus 430 L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 430 ILVLNLSSNMLTGS 443 (562)
T ss_dssp CCEEECCSSCCCGG
T ss_pred CCEEECCCCCCCcc
Confidence 44444444444443
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.27 E-value=2.6e-11 Score=86.40 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=27.8
Q ss_pred hccCCCCCCEEecCCCcCCc--cccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCC
Q 033463 33 YFTGLSKLKSLGLAGIKLNR--SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEID 100 (118)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~ 100 (118)
.+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.+..+...+..+++|+.+++++|.++
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 33444444444444444443 222334444444444444444443222222333344444444444443
No 86
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=3.3e-11 Score=82.11 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=69.0
Q ss_pred chhhccCCCCCCEEecCC-CcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcCCCC
Q 033463 30 LVYYFTGLSKLKSLGLAG-IKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK 108 (118)
Q Consensus 30 ~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~~~~ 108 (118)
.|. +..+++|+.|++++ |.+++..+..+..+++|+.|++++|.+.+.++. .|.++++|+.|+|++|++++.++....
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-HhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 366 88899999999996 999988778899999999999999999976665 599999999999999999999887654
Q ss_pred C
Q 033463 109 Q 109 (118)
Q Consensus 109 ~ 109 (118)
.
T Consensus 102 ~ 102 (347)
T 2ifg_A 102 G 102 (347)
T ss_dssp S
T ss_pred c
Confidence 4
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.26 E-value=2.9e-11 Score=86.18 Aligned_cols=98 Identities=14% Similarity=0.013 Sum_probs=72.3
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhcc-CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYFT-GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 77 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~ 77 (118)
.+.+++..|..+..+++|+.|+++++. |..+. .+++|+.|++++|.+++. + ....+++|+.|++++|.+.+.
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC
Confidence 344555566677888888888888553 44444 678888888888888765 2 244578888888888888865
Q ss_pred CChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 78 FDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
++ .+..+++|+.|++++|.+++.++.
T Consensus 207 ~~--~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 207 GP--EFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp CG--GGGGGTTCSEEECTTSCCCEECTT
T ss_pred CH--hHcCCCCccEEEecCCcCcccchh
Confidence 55 377888899999999988886654
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.25 E-value=1.3e-10 Score=77.84 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=33.9
Q ss_pred cccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCE
Q 033463 15 IKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 91 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~ 91 (118)
+..+++|+.|+++++. ++.+..+++|+.|++++|.+... +.+..+++|+.|++++|.+.+. + .+..+++|+.
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~ 160 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T--VLSRLTKLDT 160 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-G--GGGGCTTCSE
T ss_pred cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-h--hhccCCCCCE
Confidence 3444444444444222 22233444444444444444331 2233444444444444444422 1 2344444444
Q ss_pred EEcCCCCCCCC
Q 033463 92 LDLSWNEIDNL 102 (118)
Q Consensus 92 l~ls~N~l~~~ 102 (118)
|++++|.+++.
T Consensus 161 L~L~~N~l~~~ 171 (291)
T 1h6t_A 161 LSLEDNQISDI 171 (291)
T ss_dssp EECCSSCCCCC
T ss_pred EEccCCccccc
Confidence 44444444443
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.25 E-value=1.7e-10 Score=77.23 Aligned_cols=98 Identities=22% Similarity=0.236 Sum_probs=73.9
Q ss_pred cccccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCC
Q 033463 13 NTIKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNL 89 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L 89 (118)
+.+..+++|+.|+++++. .+.+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+ +..+++|
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L 180 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKL 180 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTC
T ss_pred hhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh---hcCCCcc
Confidence 347888899999998654 34567788899999999988764 467788889999999998886543 7788889
Q ss_pred CEEEcCCCCCCCCCcC-CCCCcceEEE
Q 033463 90 EVLDLSWNEIDNLVVP-QGKQLKCYLI 115 (118)
Q Consensus 90 ~~l~ls~N~l~~~~~~-~~~~l~~~~~ 115 (118)
+.|++++|.+++.+.- ....++.+.+
T Consensus 181 ~~L~L~~N~i~~l~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 181 QNLYLSKNHISDLRALAGLKNLDVLEL 207 (291)
T ss_dssp CEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred CEEECCCCcCCCChhhccCCCCCEEEC
Confidence 9999999988876432 2345555544
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.24 E-value=4.6e-11 Score=77.57 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=63.2
Q ss_pred cccCcccc---EEEeccC-c-----hhhccCCCCCC-EEecCCCcCCccccccccCCCCCcEEecCCCC-CCCCCChhhh
Q 033463 15 IKKCQLLQ---ISWILCH-L-----VYYFTGLSKLK-SLGLAGIKLNRSILSSLTVFSSLRELHLRDTG-FKGTFDVREF 83 (118)
Q Consensus 15 ~~~l~~L~---~L~l~~~-~-----~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~-l~~~~~~~~~ 83 (118)
+..+++|+ .|+++++ . +..+..+++|+ .+++++|.++...+..+.. ++|+.+++++|+ +....+ ..|
T Consensus 123 ~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~ 200 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-DAF 200 (239)
T ss_dssp CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT-TTT
T ss_pred cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH-HHh
Confidence 44455554 6666544 2 22356677777 7777777777332223333 677888888884 763333 347
Q ss_pred cCC-CCCCEEEcCCCCCCCCCcCCCCCcceEEE
Q 033463 84 DSF-NNLEVLDLSWNEIDNLVVPQGKQLKCYLI 115 (118)
Q Consensus 84 ~~l-~~L~~l~ls~N~l~~~~~~~~~~l~~~~~ 115 (118)
..+ ++|+.+++++|++++.++.....++.+.+
T Consensus 201 ~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l 233 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233 (239)
T ss_dssp TTCSBCCSEEECTTCCCCCCCCTTCTTCSEEEC
T ss_pred hccccCCcEEECCCCccccCChhHhccCceeec
Confidence 777 78888888888888877776666666554
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.23 E-value=1.9e-10 Score=77.54 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=24.0
Q ss_pred CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCC
Q 033463 36 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 36 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~ 101 (118)
.+++|+.|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 105 ~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCC
Confidence 334444444444444321 1 13344444444444444432221 3334444444444444443
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=1.4e-11 Score=83.04 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=37.6
Q ss_pred hccCCCCCCEEecCCCcCCcc--ccccc--cCCCCCcEEecCCCCCCCC--CChhhhcCCCCCCEEEcCCCCCCCCC
Q 033463 33 YFTGLSKLKSLGLAGIKLNRS--ILSSL--TVFSSLRELHLRDTGFKGT--FDVREFDSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~l~ls~n~l~~~--~~~~~~~~l~~L~~l~ls~N~l~~~~ 103 (118)
.++.+++|+.|++++|.+.+. .+..+ ..+++|++|++++|.+.+. .+...+..+++|+.|++++|.+++.+
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 344555555555555554432 12222 4555666666666665521 11122345567777777777776655
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.23 E-value=1.5e-11 Score=79.88 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=46.9
Q ss_pred ccccccCccccEEEeccCc------hhhccCCCCCCEEecCC-CcCCccccccccCCCCCcEEecCCCCCCCCCChhhhc
Q 033463 12 TNTIKKCQLLQISWILCHL------VYYFTGLSKLKSLGLAG-IKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD 84 (118)
Q Consensus 12 p~~~~~l~~L~~L~l~~~~------~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~ 84 (118)
+..+..+++|+.|+++++. +..+..+++|+.|++++ |.++...+..+..+++|++|++++|.+.+ +| .+.
T Consensus 48 ~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp--~~~ 124 (239)
T 2xwt_C 48 SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FP--DLT 124 (239)
T ss_dssp TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CC--CCT
T ss_pred HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cc--ccc
Confidence 3345556666666666442 12345556666666665 66654444455556666666666665553 22 144
Q ss_pred CCCCCC---EEEcCCC-CCCCCCc
Q 033463 85 SFNNLE---VLDLSWN-EIDNLVV 104 (118)
Q Consensus 85 ~l~~L~---~l~ls~N-~l~~~~~ 104 (118)
.+++|+ .+++++| .+++.++
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECT
T ss_pred cccccccccEEECCCCcchhhcCc
Confidence 444444 5555555 4444443
No 94
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=1.1e-11 Score=93.87 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=40.6
Q ss_pred Cccccc--cCccccEEEeccC-----chhhccCCCCCCEEecCCCc-CCc-cccccccCC-------CCCcEEecCCCCC
Q 033463 11 TTNTIK--KCQLLQISWILCH-----LVYYFTGLSKLKSLGLAGIK-LNR-SILSSLTVF-------SSLRELHLRDTGF 74 (118)
Q Consensus 11 ~p~~~~--~l~~L~~L~l~~~-----~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~l~ls~n~l 74 (118)
+|+.+. .+++|+.|+++.+ .|..+..+++|+.|++++|. +++ .+|..+..+ ++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 444443 4444444444422 13444444445555555444 444 334333222 2455555555555
Q ss_pred CCCCCh-hhhcCCCCCCEEEcCCCCCC
Q 033463 75 KGTFDV-REFDSFNNLEVLDLSWNEID 100 (118)
Q Consensus 75 ~~~~~~-~~~~~l~~L~~l~ls~N~l~ 100 (118)
. .+|. ..+.++++|+.|++++|.++
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 4 3332 12555555555555555555
No 95
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.23 E-value=7.1e-11 Score=80.24 Aligned_cols=97 Identities=21% Similarity=0.166 Sum_probs=63.9
Q ss_pred cccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCE
Q 033463 15 IKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 91 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~ 91 (118)
+..+++|+.|+++++. .+.+..+++|+.|++++|.+... +.+..+++|+.|++++|.+.+..+. .+..+++|+.
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~ 315 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTT 315 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSE
T ss_pred hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCE
Confidence 5566666777666443 23456677777777777777653 3466677788888888877754443 4777888888
Q ss_pred EEcCCCCCCCCCc-CCCCCcceEE
Q 033463 92 LDLSWNEIDNLVV-PQGKQLKCYL 114 (118)
Q Consensus 92 l~ls~N~l~~~~~-~~~~~l~~~~ 114 (118)
+++++|++++.++ .....++.+.
T Consensus 316 L~L~~n~l~~~~~~~~l~~L~~L~ 339 (347)
T 4fmz_A 316 LFLSQNHITDIRPLASLSKMDSAD 339 (347)
T ss_dssp EECCSSSCCCCGGGGGCTTCSEES
T ss_pred EEccCCccccccChhhhhccceee
Confidence 8888888887766 2234444443
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.22 E-value=9.2e-11 Score=88.26 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=61.8
Q ss_pred CCCccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhh
Q 033463 9 KGTTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREF 83 (118)
Q Consensus 9 ~~~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~ 83 (118)
+..|..+..+++|+.|+++.+. +..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+....+. .|
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~ 358 (844)
T 3j0a_A 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ-TF 358 (844)
T ss_dssp EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS-CS
T ss_pred ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh-hh
Confidence 3345556667777777776443 34566677777777777777666666677777777777777777644443 46
Q ss_pred cCCCCCCEEEcCCCCCCCCC
Q 033463 84 DSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 84 ~~l~~L~~l~ls~N~l~~~~ 103 (118)
..+++|+.|++++|.+++.+
T Consensus 359 ~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 359 KFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CSCCCCCEEEEETCCSCCCS
T ss_pred cCCCCCCEEECCCCCCCccc
Confidence 66777777777777766644
No 97
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=3.7e-11 Score=89.36 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=82.8
Q ss_pred CCccccccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcC
Q 033463 10 GTTNTIKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDS 85 (118)
Q Consensus 10 ~~p~~~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~ 85 (118)
.+|..+..+++|++|+++++. |+.+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+. .+|.. |+.
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~-~~~ 314 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE-FGN 314 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS-TTS
T ss_pred CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh-hhc
Confidence 577788899999999999554 677889999999999999999 66888999999999999999998 55554 999
Q ss_pred CCCCCEEEcCCCCCCCCCcCC
Q 033463 86 FNNLEVLDLSWNEIDNLVVPQ 106 (118)
Q Consensus 86 l~~L~~l~ls~N~l~~~~~~~ 106 (118)
+++|+.|+|++|.+++.++..
T Consensus 315 l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CTTCCCEECTTSCCCSHHHHH
T ss_pred CCCccEEeCCCCccCCCChHH
Confidence 999999999999999887653
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=7.8e-11 Score=71.33 Aligned_cols=95 Identities=22% Similarity=0.229 Sum_probs=75.3
Q ss_pred CccccEEEeccCc------hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCE
Q 033463 18 CQLLQISWILCHL------VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 91 (118)
Q Consensus 18 l~~L~~L~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~ 91 (118)
.++++.|+++++. |+.+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.++. .+..+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCE
Confidence 4678999998443 45567889999999999999865 6788899999999999999976664 4777999999
Q ss_pred EEcCCCCCCCCC--cC--CCCCcceEEE
Q 033463 92 LDLSWNEIDNLV--VP--QGKQLKCYLI 115 (118)
Q Consensus 92 l~ls~N~l~~~~--~~--~~~~l~~~~~ 115 (118)
+++++|.+++.+ .. ....++.+.+
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 999999999864 22 2344555544
No 99
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.22 E-value=1.8e-10 Score=78.01 Aligned_cols=72 Identities=25% Similarity=0.275 Sum_probs=45.2
Q ss_pred hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 32 YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 32 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|. .+..+++|+.+++++|++++.++.
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG-GLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT-TTTTCSSCCEEECCSSCCCCCCTT
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh-hhccCCCcCEEECCCCcCCccChh
Confidence 34555666666666666666555555666666667777776666 3333 366666777777777777666554
No 100
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=7.2e-11 Score=73.50 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=77.2
Q ss_pred cccccCccccEEEeccCchhh---ccCC-CCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCC
Q 033463 13 NTIKKCQLLQISWILCHLVYY---FTGL-SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNN 88 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~~~~---~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~ 88 (118)
..+..+.+++.|+++++.... +..+ ++|+.|++++|.+++. ..+..+++|++|++++|.+.+.++. .+..+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG-LDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC-HHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc-hhhcCCC
Confidence 345678899999999665333 3344 4999999999999865 5788999999999999999965443 4688999
Q ss_pred CCEEEcCCCCCCCCCc--C--CCCCcceEEE
Q 033463 89 LEVLDLSWNEIDNLVV--P--QGKQLKCYLI 115 (118)
Q Consensus 89 L~~l~ls~N~l~~~~~--~--~~~~l~~~~~ 115 (118)
|+.|++++|.++..+. . ....++.+.+
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 9999999999987665 2 2345555544
No 101
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=1.7e-10 Score=87.38 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=68.9
Q ss_pred ccccEEEeccCc----hhhcc--CCCCCCEEecCCCcCCccccccccCCCCCcEEecCC------CCCCCCCChhhhcCC
Q 033463 19 QLLQISWILCHL----VYYFT--GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRD------TGFKGTFDVREFDSF 86 (118)
Q Consensus 19 ~~L~~L~l~~~~----~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~------n~l~~~~~~~~~~~l 86 (118)
++|+.|+++++. |..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+.+|. .+..+
T Consensus 728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L 805 (876)
T 4ecn_A 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTC 805 (876)
T ss_dssp GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGC
T ss_pred CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH-HHhcC
Confidence 377778777443 55555 77888888888888876 577777888888888865 666666665 47778
Q ss_pred CCCCEEEcCCCCCCCCCcCCCCCcceEEEe
Q 033463 87 NNLEVLDLSWNEIDNLVVPQGKQLKCYLIT 116 (118)
Q Consensus 87 ~~L~~l~ls~N~l~~~~~~~~~~l~~~~~~ 116 (118)
++|+.|++++|.+..++......|+.++++
T Consensus 806 ~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs 835 (876)
T 4ecn_A 806 PSLIQLQIGSNDIRKVDEKLTPQLYILDIA 835 (876)
T ss_dssp SSCCEEECCSSCCCBCCSCCCSSSCEEECC
T ss_pred CCCCEEECCCCCCCccCHhhcCCCCEEECC
Confidence 888888888888865665555666666554
No 102
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.21 E-value=3.5e-10 Score=76.23 Aligned_cols=85 Identities=20% Similarity=0.260 Sum_probs=43.7
Q ss_pred cccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCE
Q 033463 15 IKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 91 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~ 91 (118)
+..+++|+.|+++++. .+.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.
T Consensus 125 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~ 199 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP---LASLPNLIE 199 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCE
T ss_pred hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh---hcCCCCCCE
Confidence 4444455555554332 1124445555555555555553222 5555566666666666553322 555566666
Q ss_pred EEcCCCCCCCCCc
Q 033463 92 LDLSWNEIDNLVV 104 (118)
Q Consensus 92 l~ls~N~l~~~~~ 104 (118)
|++++|.+++.++
T Consensus 200 L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 200 VHLKNNQISDVSP 212 (308)
T ss_dssp EECTTSCCCBCGG
T ss_pred EEccCCccCcccc
Confidence 6666666665543
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=1.1e-10 Score=78.83 Aligned_cols=108 Identities=14% Similarity=0.039 Sum_probs=74.8
Q ss_pred ceeecCCCccccccCccccEEEeccCc-----hhhc-cCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL-----VYYF-TGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 77 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~-----~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~ 77 (118)
.+.+....+..+..+++|+.|+++++. +..+ ..+++|+.|++++|.++.. + ....+++|++|++++|.+.+.
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc
Confidence 334445456677778888888888554 3333 3678888888888888754 2 234578889999999988854
Q ss_pred CChhhhcCCCCCCEEEcCCCCCCCCCcCC--CCCcceEEE
Q 033463 78 FDVREFDSFNNLEVLDLSWNEIDNLVVPQ--GKQLKCYLI 115 (118)
Q Consensus 78 ~~~~~~~~l~~L~~l~ls~N~l~~~~~~~--~~~l~~~~~ 115 (118)
++ .+..+++|+.+++++|.+++.+... ...++.+.+
T Consensus 207 ~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 207 GP--EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (317)
T ss_dssp CG--GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred hh--hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEc
Confidence 44 3778889999999999888766542 234444443
No 104
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.18 E-value=2.7e-10 Score=77.17 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=42.2
Q ss_pred ccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCC
Q 033463 12 TNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSF 86 (118)
Q Consensus 12 p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l 86 (118)
|..+..+++|++|+++++. +..+..+++|++|++++|.+.. .|..+. ++|++|++++|.+....+. .+.++
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~-~~~~l 146 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKG-VFSGL 146 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSG-GGSSC
T ss_pred HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHh-HhCCC
Confidence 3445555555555555332 3344455555555555555542 222222 4555555555555533332 35556
Q ss_pred CCCCEEEcCCCCCC
Q 033463 87 NNLEVLDLSWNEID 100 (118)
Q Consensus 87 ~~L~~l~ls~N~l~ 100 (118)
++|+.+++++|.++
T Consensus 147 ~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 147 RNMNCIEMGGNPLE 160 (332)
T ss_dssp SSCCEEECCSCCCB
T ss_pred ccCCEEECCCCccc
Confidence 66666666666554
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=3.1e-10 Score=83.01 Aligned_cols=82 Identities=21% Similarity=0.260 Sum_probs=33.6
Q ss_pred cccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCE
Q 033463 15 IKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 91 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~ 91 (118)
+..+++|+.|+++++. ++.+..+++|+.|+++.|.+... +.+..+++|+.|++++|.+.+. + .+..+++|+.
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~ 157 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T--VLSRLTKLDT 157 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G--GGGSCTTCSE
T ss_pred hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-h--hhcccCCCCE
Confidence 4445555555554332 22333444444444444444431 2233444444444444444422 1 2333444444
Q ss_pred EEcCCCCCCC
Q 033463 92 LDLSWNEIDN 101 (118)
Q Consensus 92 l~ls~N~l~~ 101 (118)
|+|++|.+++
T Consensus 158 L~Ls~N~l~~ 167 (605)
T 1m9s_A 158 LSLEDNQISD 167 (605)
T ss_dssp EECCSSCCCC
T ss_pred EECcCCcCCC
Confidence 4444444433
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.18 E-value=6.3e-10 Score=73.52 Aligned_cols=60 Identities=33% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCC
Q 033463 38 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 38 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~ 102 (118)
++|+.|++++|.+++. +.+..+++|+.|++++|++.+. + .+..+++|+.|++++|.+++.
T Consensus 106 ~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G--GGGGCTTCCEEECTTSCCCBC
T ss_pred CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h--HHccCCCCCEEECCCCcCcch
Confidence 3444444444444432 2355666666666666666643 2 355666666666666666665
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=3.4e-10 Score=82.75 Aligned_cols=84 Identities=24% Similarity=0.276 Sum_probs=44.2
Q ss_pred ccccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCC
Q 033463 14 TIKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE 90 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~ 90 (118)
.+..+++|+.|+++++. ++.+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~ 178 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQ 178 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCC
T ss_pred hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh---hccCCCCC
Confidence 44555555555555332 23344555555555555555543 345555555555555555554333 44555555
Q ss_pred EEEcCCCCCCCC
Q 033463 91 VLDLSWNEIDNL 102 (118)
Q Consensus 91 ~l~ls~N~l~~~ 102 (118)
.|+|++|.+++.
T Consensus 179 ~L~Ls~N~i~~l 190 (605)
T 1m9s_A 179 NLYLSKNHISDL 190 (605)
T ss_dssp EEECCSSCCCBC
T ss_pred EEECcCCCCCCC
Confidence 555555555554
No 108
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.17 E-value=9.8e-11 Score=79.37 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=73.9
Q ss_pred CceeecCCCccccccCccccEEEeccCchhhcc--CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCC--CC
Q 033463 3 DKFVVSKGTTNTIKKCQLLQISWILCHLVYYFT--GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG--TF 78 (118)
Q Consensus 3 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~--~~ 78 (118)
+.+.+.+..|..+..+++|++|+++++....+. ..++|+.|++++|.+....+..+..+++|+.|++++|.+.. ..
T Consensus 86 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 86 VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp CSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred CCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 344555566888999999999999966533222 12789999999999987666678889999999999998863 23
Q ss_pred ChhhhcCCCCCCEEEcCCCCCCCCCcCCCCCcc
Q 033463 79 DVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK 111 (118)
Q Consensus 79 ~~~~~~~l~~L~~l~ls~N~l~~~~~~~~~~l~ 111 (118)
+. .+..+ +|+.+++++|.+++.+......++
T Consensus 166 ~~-~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~ 196 (332)
T 2ft3_A 166 PG-AFDGL-KLNYLRISEAKLTGIPKDLPETLN 196 (332)
T ss_dssp TT-SSCSC-CCSCCBCCSSBCSSCCSSSCSSCS
T ss_pred cc-cccCC-ccCEEECcCCCCCccCccccCCCC
Confidence 32 35555 666666666666665544333333
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.16 E-value=1.7e-10 Score=78.34 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=72.6
Q ss_pred cccccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCC
Q 033463 13 NTIKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNL 89 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L 89 (118)
+.+..+++|+.|+++++. .+.+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+.+..+ +..+++|
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L 335 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKM 335 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTC
T ss_pred hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhcc
Confidence 457889999999999665 3457788999999999999998888889999999999999999996655 7789999
Q ss_pred CEEEcCCCCCC
Q 033463 90 EVLDLSWNEID 100 (118)
Q Consensus 90 ~~l~ls~N~l~ 100 (118)
+.+++++|.++
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 99999999986
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=2e-10 Score=81.86 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=9.8
Q ss_pred ecCCCccccccCccccEEEec
Q 033463 7 VSKGTTNTIKKCQLLQISWIL 27 (118)
Q Consensus 7 ~~~~~p~~~~~l~~L~~L~l~ 27 (118)
+....|..+..+++|++|+++
T Consensus 46 l~~~~~~~~~~l~~L~~L~Ls 66 (487)
T 3oja_A 46 LSQISAADLAPFTKLELLNLS 66 (487)
T ss_dssp CCCCCGGGGTTCTTCCEEECT
T ss_pred CCCCCHHHHhCCCCCCEEEee
Confidence 333334444455555555554
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.12 E-value=6.1e-11 Score=79.81 Aligned_cols=88 Identities=22% Similarity=0.147 Sum_probs=46.8
Q ss_pred cCccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCcc--cc--ccccCCCCCcEEecCCCCCCCCCCh--hhhcC
Q 033463 17 KCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRS--IL--SSLTVFSSLRELHLRDTGFKGTFDV--REFDS 85 (118)
Q Consensus 17 ~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~--~~--~~~~~l~~L~~l~ls~n~l~~~~~~--~~~~~ 85 (118)
.+++|++|+++++. +..+..+++|++|++++|.+.+. .+ ..+..+++|++|++++|.+...... ..+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 34455555555332 23444555666666666654431 11 1124455666666666666521110 11456
Q ss_pred CCCCCEEEcCCCCCCCCCc
Q 033463 86 FNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 86 l~~L~~l~ls~N~l~~~~~ 104 (118)
+++|+.|++++|.+++..|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp TCCCSSEECTTSCCCCCCC
T ss_pred CCCCCEEECCCCCCCccch
Confidence 6888888888888888743
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=2.6e-10 Score=82.78 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=75.1
Q ss_pred cccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCC
Q 033463 20 LLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 96 (118)
Q Consensus 20 ~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~ 96 (118)
.|+.|+++++. .+.++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCC
Confidence 47788888554 223788999999999999999 668899999999999999999996 55 499999999999999
Q ss_pred CCCCCCC-cCC---CCCcceEEE
Q 033463 97 NEIDNLV-VPQ---GKQLKCYLI 115 (118)
Q Consensus 97 N~l~~~~-~~~---~~~l~~~~~ 115 (118)
|.+++.. |.. ...|+.+.+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEe
Confidence 9999985 543 244555544
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.11 E-value=1.2e-09 Score=72.09 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=61.0
Q ss_pred ccccCccccEEEeccCch---hhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCC
Q 033463 14 TIKKCQLLQISWILCHLV---YYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE 90 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~ 90 (118)
.+..+++|+.|+++++.. +.+..+++|+.|++++|.+++. |. +.. ++|++|++++|.+.+ .+ .+..+++|+
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~ 131 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLE 131 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCC
T ss_pred HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch--hhcCccccc
Confidence 466677777777774431 1266677777777777777653 22 222 777777777777774 33 477888888
Q ss_pred EEEcCCCCCCCCCcC-CCCCcceEE
Q 033463 91 VLDLSWNEIDNLVVP-QGKQLKCYL 114 (118)
Q Consensus 91 ~l~ls~N~l~~~~~~-~~~~l~~~~ 114 (118)
.|++++|++++.+.- ....++.+.
T Consensus 132 ~L~Ls~N~i~~~~~l~~l~~L~~L~ 156 (263)
T 1xeu_A 132 ILSIRNNKLKSIVMLGFLSKLEVLD 156 (263)
T ss_dssp EEECTTSCCCBCGGGGGCTTCCEEE
T ss_pred EEECCCCcCCCChHHccCCCCCEEE
Confidence 888888888876431 224444443
No 114
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.10 E-value=7.2e-11 Score=79.73 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=22.8
Q ss_pred eeecCCCccccccCccccEEEeccCch---hhccCCCCCCEEecCCCcCC
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHLV---YYFTGLSKLKSLGLAGIKLN 51 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 51 (118)
+.+....|..+..+++|+.|+++++.. ..+..+++|+.|++++|.++
T Consensus 44 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 44 NPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEE
T ss_pred CccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccc
Confidence 334444445566666666666654331 11444445555555444443
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.06 E-value=2e-09 Score=76.03 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=48.0
Q ss_pred cccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCE
Q 033463 15 IKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 91 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~ 91 (118)
+..+++|+.|+++++. ...+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.+. + .+..+++|+.
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~ 357 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINW 357 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCE
T ss_pred ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhccCCCCCE
Confidence 4455555555555332 1124455666666666666654433 45566666666666666643 2 3566666666
Q ss_pred EEcCCCCCCCCCc
Q 033463 92 LDLSWNEIDNLVV 104 (118)
Q Consensus 92 l~ls~N~l~~~~~ 104 (118)
+++++|++++.+|
T Consensus 358 L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 358 LSAGHNQISDLTP 370 (466)
T ss_dssp EECCSSCCCBCGG
T ss_pred EeCCCCccCccch
Confidence 6776666666554
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.06 E-value=9.8e-10 Score=77.82 Aligned_cols=92 Identities=18% Similarity=0.129 Sum_probs=48.1
Q ss_pred ccccCccccEEEeccCchh--hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCE
Q 033463 14 TIKKCQLLQISWILCHLVY--YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 91 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~ 91 (118)
.+..+++|++|+++++... .++.+++|++|++++|.+++. + ++.+++|++|++++|.+.+ .+ ++.+++|+.
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~ 131 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTY 131 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCE
T ss_pred hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCE
Confidence 3555555555555533311 144555556666666655542 1 5555666666666666653 22 555566666
Q ss_pred EEcCCCCCCCCCcCCCCCcce
Q 033463 92 LDLSWNEIDNLVVPQGKQLKC 112 (118)
Q Consensus 92 l~ls~N~l~~~~~~~~~~l~~ 112 (118)
+++++|.+++.+......++.
T Consensus 132 L~l~~N~l~~l~l~~l~~L~~ 152 (457)
T 3bz5_A 132 LNCARNTLTEIDVSHNTQLTE 152 (457)
T ss_dssp EECTTSCCSCCCCTTCTTCCE
T ss_pred EECCCCccceeccccCCcCCE
Confidence 666666666654333333433
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.03 E-value=3.7e-09 Score=74.85 Aligned_cols=101 Identities=16% Similarity=0.057 Sum_probs=73.6
Q ss_pred cCCCccccccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhc
Q 033463 8 SKGTTNTIKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD 84 (118)
Q Consensus 8 ~~~~p~~~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~ 84 (118)
....+..+..+++|++|+++++. .+.+..+++|+.|++++|.+++. | +..+++|++|++++|.+.+. + ++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~ 103 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D---VT 103 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C---CT
T ss_pred CcccccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e---cC
Confidence 34455667788888888888543 23567788888888888888764 3 77788888888888888853 3 77
Q ss_pred CCCCCCEEEcCCCCCCCCCcCCCCCcceEEE
Q 033463 85 SFNNLEVLDLSWNEIDNLVVPQGKQLKCYLI 115 (118)
Q Consensus 85 ~l~~L~~l~ls~N~l~~~~~~~~~~l~~~~~ 115 (118)
.+++|+.|++++|.+++.+......++.+.+
T Consensus 104 ~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l 134 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNC 134 (457)
T ss_dssp TCTTCCEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred CCCcCCEEECCCCcCCeecCCCCCcCCEEEC
Confidence 7888888888888888875444455555543
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.02 E-value=4.2e-09 Score=74.37 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=28.7
Q ss_pred CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCC
Q 033463 36 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 36 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~ 103 (118)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++.+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCG
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCch
Confidence 34444444444444443211 3444445555555554443222 444555555555555555544
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=6.9e-12 Score=79.54 Aligned_cols=86 Identities=21% Similarity=0.231 Sum_probs=54.2
Q ss_pred ccccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCC
Q 033463 14 TIKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE 90 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~ 90 (118)
.+..+++|++|+++++. .+.+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccccCCCCC
Confidence 67777777877777433 125555677777777777766 345445555667777777777664 33 355566666
Q ss_pred EEEcCCCCCCCCC
Q 033463 91 VLDLSWNEIDNLV 103 (118)
Q Consensus 91 ~l~ls~N~l~~~~ 103 (118)
.+++++|.+++.+
T Consensus 119 ~L~l~~N~i~~~~ 131 (198)
T 1ds9_A 119 VLYMSNNKITNWG 131 (198)
T ss_dssp EEEESEEECCCHH
T ss_pred EEECCCCcCCchh
Confidence 6666666666543
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.95 E-value=1.1e-08 Score=74.35 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=6.1
Q ss_pred CCCCEEecCCCcCC
Q 033463 38 SKLKSLGLAGIKLN 51 (118)
Q Consensus 38 ~~L~~L~l~~n~l~ 51 (118)
++|+.|++++|.++
T Consensus 100 ~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 100 ASLEYLDACDNRLS 113 (571)
T ss_dssp TTCCEEECCSSCCS
T ss_pred CCCCEEEccCCCCC
Confidence 44444444444444
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=1e-11 Score=78.76 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=76.8
Q ss_pred ceeecCCCccccccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCC
Q 033463 4 KFVVSKGTTNTIKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD 79 (118)
Q Consensus 4 ~~~~~~~~p~~~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~ 79 (118)
.+.+.. +| .+..+++|+.|+++++. |..+..+++|+.|++++|.+++. | .+..+++|+.|++++|.+.+..+
T Consensus 57 ~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 57 TNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGE 132 (198)
T ss_dssp EEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHH
T ss_pred CCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhH
Confidence 344444 56 88899999999999554 44455678999999999999863 4 57888999999999999985443
Q ss_pred hhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 80 VREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
...+..+++|+.+++++|.+++..+
T Consensus 133 ~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 133 IDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred HHHHhcCCCCCEEEecCCccccccc
Confidence 2358889999999999999877644
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.93 E-value=1.9e-10 Score=78.97 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=54.3
Q ss_pred eeecCCCccccccCccccEEEeccCc-----h----hhccCCC-CCCEEecCCCcCCccccccccCC-----CCCcEEec
Q 033463 5 FVVSKGTTNTIKKCQLLQISWILCHL-----V----YYFTGLS-KLKSLGLAGIKLNRSILSSLTVF-----SSLRELHL 69 (118)
Q Consensus 5 ~~~~~~~p~~~~~l~~L~~L~l~~~~-----~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l 69 (118)
+.+++.+|..+...++|++|+++++. + +.+..++ +|+.|++++|.+....+..+..+ ++|++|++
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 33444444445555557777776443 1 3344555 67777777776665544444332 66666666
Q ss_pred CCCCCCCCCChh---hhcCC-CCCCEEEcCCCCCCCCCc
Q 033463 70 RDTGFKGTFDVR---EFDSF-NNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 70 s~n~l~~~~~~~---~~~~l-~~L~~l~ls~N~l~~~~~ 104 (118)
++|.+.+..+.. .+... ++|+.|++++|.+++..+
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 666666433321 13333 566666666666655543
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.92 E-value=2.4e-09 Score=72.29 Aligned_cols=86 Identities=26% Similarity=0.337 Sum_probs=62.9
Q ss_pred cccCccccEEEeccCc------hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCC-CCCCC-CChhhhcCC
Q 033463 15 IKKCQLLQISWILCHL------VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDT-GFKGT-FDVREFDSF 86 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n-~l~~~-~~~~~~~~l 86 (118)
+..+++|++|+++++. +..+..+++|+.|++++|.+.+..+..+..+++|++|++++| .+.+. .+. .+..+
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~ 167 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSC 167 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHC
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcC
Confidence 5567888888887543 345667888888888888887766777777888888888888 56642 332 36677
Q ss_pred CCCCEEEcCCC-CCCC
Q 033463 87 NNLEVLDLSWN-EIDN 101 (118)
Q Consensus 87 ~~L~~l~ls~N-~l~~ 101 (118)
++|+.|++++| .+++
T Consensus 168 ~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 168 SRLDELNLSWCFDFTE 183 (336)
T ss_dssp TTCCEEECCCCTTCCH
T ss_pred CCCCEEcCCCCCCcCh
Confidence 88888888888 7765
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.92 E-value=2e-08 Score=71.09 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=43.4
Q ss_pred CccccccCccccEEEeccCchhhcc-CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCC-------------
Q 033463 11 TTNTIKKCQLLQISWILCHLVYYFT-GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG------------- 76 (118)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~------------- 76 (118)
+| .+..+++|++|+++++....+. ..++|+.|++++|.+++ .| .++.+++|+++++++|.+.+
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l 222 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVA 222 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEEC
Confidence 44 4666666777766644432221 12345555555555543 22 34444444444444444432
Q ss_pred ------CCChhhhcCCCCCCEEEcCCCCCCCCC
Q 033463 77 ------TFDVREFDSFNNLEVLDLSWNEIDNLV 103 (118)
Q Consensus 77 ------~~~~~~~~~l~~L~~l~ls~N~l~~~~ 103 (118)
.+| .++.+++|+.+++++|++++.+
T Consensus 223 ~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 223 GNNILEELP--ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred cCCcCCccc--ccCCCCCCCEEECCCCcCCccc
Confidence 222 2455556666666666665543
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.88 E-value=4.5e-10 Score=77.52 Aligned_cols=68 Identities=26% Similarity=0.298 Sum_probs=31.9
Q ss_pred hccCCCCCCEEecCCCcCC----ccccccccCCCCCcEEecCCCCCCCC----CChhhh--cCCCCCCEEEcCCCCCCC
Q 033463 33 YFTGLSKLKSLGLAGIKLN----RSILSSLTVFSSLRELHLRDTGFKGT----FDVREF--DSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~l~ls~n~l~~~----~~~~~~--~~l~~L~~l~ls~N~l~~ 101 (118)
.+..+++|+.|++++|.++ ..+|..+..+++|+.|++++|.+.+. ++. .+ +.+++|+.|++++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCH
Confidence 3444555555555555553 23344444555555555555555432 111 12 224555555555555544
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.86 E-value=3.1e-08 Score=72.07 Aligned_cols=90 Identities=16% Similarity=0.086 Sum_probs=60.0
Q ss_pred cCccccEEEeccCchhhccCCC-CCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcC
Q 033463 17 KCQLLQISWILCHLVYYFTGLS-KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 95 (118)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls 95 (118)
.+++|+.|++++|....+..+. +|+.|++++|.+++ +|. .+++|+.|++++|.+.+ +|. .+++|+.|+++
T Consensus 98 ~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls 168 (571)
T 3cvr_A 98 LPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVR 168 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECC
T ss_pred ccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECC
Confidence 4567777777755432222222 78888888888876 344 56788888888888875 442 46788888888
Q ss_pred CCCCCCCCcCCCCCcceEEEe
Q 033463 96 WNEIDNLVVPQGKQLKCYLIT 116 (118)
Q Consensus 96 ~N~l~~~~~~~~~~l~~~~~~ 116 (118)
+|.+++++. ....|+.+.++
T Consensus 169 ~N~L~~lp~-l~~~L~~L~Ls 188 (571)
T 3cvr_A 169 NNQLTFLPE-LPESLEALDVS 188 (571)
T ss_dssp SSCCSCCCC-CCTTCCEEECC
T ss_pred CCCCCCcch-hhCCCCEEECc
Confidence 888888665 44566655543
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.86 E-value=5.6e-10 Score=75.43 Aligned_cols=38 Identities=32% Similarity=0.285 Sum_probs=15.8
Q ss_pred cCCCCCcEEecCCCC-CCCCCChhhhcCCCCCCEEEcCCC
Q 033463 59 TVFSSLRELHLRDTG-FKGTFDVREFDSFNNLEVLDLSWN 97 (118)
Q Consensus 59 ~~l~~L~~l~ls~n~-l~~~~~~~~~~~l~~L~~l~ls~N 97 (118)
..+++|+.|++++|. +.+..+. .+..+++|+.|++++|
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTC
T ss_pred hhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCC
Confidence 334444444444444 2222221 2444444444444444
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.85 E-value=2.6e-09 Score=73.67 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=74.0
Q ss_pred ccccCccccEEEeccCc---------hhhccCCCCCCEEecCCCcCCcc----cccccc--CCCCCcEEecCCCCCCC--
Q 033463 14 TIKKCQLLQISWILCHL---------VYYFTGLSKLKSLGLAGIKLNRS----ILSSLT--VFSSLRELHLRDTGFKG-- 76 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~---------~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~--~l~~L~~l~ls~n~l~~-- 76 (118)
.+..+++|+.|+++++. +..+..+++|+.|++++|.+.+. ++..+. .+++|+.|++++|.+.+
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 67789999999999654 45577899999999999999865 455553 48999999999999996
Q ss_pred --CCChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 77 --TFDVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 77 --~~~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
.++...+.++++|+.|++++|.+++..+
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 2554323668999999999999998763
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.80 E-value=9.1e-08 Score=67.69 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=56.7
Q ss_pred ccccCccccEEEeccCchhhccC-CCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEE
Q 033463 14 TIKKCQLLQISWILCHLVYYFTG-LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL 92 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l 92 (118)
.+..+++|+.|+++++....+.. .++|+.|++++|.+. .+| .+..+++|+++++++|.+.+... .+++|+.+
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L 262 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD-----LPPSLEAL 262 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEE
T ss_pred cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc-----cccccCEE
Confidence 57777888888887665443322 357788888888777 445 37788888888888888875322 13567777
Q ss_pred EcCCCCCCCCC
Q 033463 93 DLSWNEIDNLV 103 (118)
Q Consensus 93 ~ls~N~l~~~~ 103 (118)
++++|.+++.+
T Consensus 263 ~l~~N~l~~l~ 273 (454)
T 1jl5_A 263 NVRDNYLTDLP 273 (454)
T ss_dssp ECCSSCCSCCC
T ss_pred ECCCCcccccC
Confidence 77777776643
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.78 E-value=2.1e-08 Score=68.56 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=69.1
Q ss_pred CccccccCccccEEEeccCc----h-hhccCCCCCCEEecCCCcCCcccc-ccccCCCCCcE-EecCCCCCCCCCChhhh
Q 033463 11 TTNTIKKCQLLQISWILCHL----V-YYFTGLSKLKSLGLAGIKLNRSIL-SSLTVFSSLRE-LHLRDTGFKGTFDVREF 83 (118)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~~~----~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-l~ls~n~l~~~~~~~~~ 83 (118)
+|..+ .+++++|+++++. + ..|.++++|+.|++++|.+.+.+| ..|..++++.+ +.+..|++....+. .|
T Consensus 24 iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-~f 100 (350)
T 4ay9_X 24 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-AF 100 (350)
T ss_dssp CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT-SB
T ss_pred cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch-hh
Confidence 45544 2578899998664 3 357788999999999998865444 45778887765 56667888855554 58
Q ss_pred cCCCCCCEEEcCCCCCCCCCcCC
Q 033463 84 DSFNNLEVLDLSWNEIDNLVVPQ 106 (118)
Q Consensus 84 ~~l~~L~~l~ls~N~l~~~~~~~ 106 (118)
..+++|+.+++++|.+++.++..
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~ 123 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVH 123 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCT
T ss_pred hhccccccccccccccccCCchh
Confidence 89999999999999998877653
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.75 E-value=5.2e-08 Score=66.57 Aligned_cols=105 Identities=21% Similarity=0.102 Sum_probs=73.1
Q ss_pred cCCCccccccCccccEEEeccCc------------------------------hhhccCC-CCCCEEecCCCcCCccccc
Q 033463 8 SKGTTNTIKKCQLLQISWILCHL------------------------------VYYFTGL-SKLKSLGLAGIKLNRSILS 56 (118)
Q Consensus 8 ~~~~p~~~~~l~~L~~L~l~~~~------------------------------~~~~~~l-~~L~~L~l~~n~l~~~~~~ 56 (118)
....|..+..+++|++|+++++. +..+..+ ..++.|++++|.++.. +.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~ 171 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HN 171 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CT
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC-Ch
Confidence 34446667788888888776321 0112222 3467788999988854 44
Q ss_pred cccCCCCCcEEecCC-CCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcCCCCCcceEE
Q 033463 57 SLTVFSSLRELHLRD-TGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYL 114 (118)
Q Consensus 57 ~~~~l~~L~~l~ls~-n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~~~~~l~~~~ 114 (118)
......+++.+++++ |.+. .++...|..+++|+.|++++|+++..++.....++-+.
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred hhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence 444567888999976 5555 56555689999999999999999999887666665543
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.72 E-value=1e-08 Score=70.37 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=36.7
Q ss_pred CCCEEecCCCcCCcccccc----ccCC-CCCcEEecCCCCCCCC----CChhhhcC-CCCCCEEEcCCCCCCCCCc
Q 033463 39 KLKSLGLAGIKLNRSILSS----LTVF-SSLRELHLRDTGFKGT----FDVREFDS-FNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 39 ~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~l~ls~n~l~~~----~~~~~~~~-l~~L~~l~ls~N~l~~~~~ 104 (118)
+|+.|++++|.++...+.. +... ++|++|++++|.+.+. ++. .+.. .++|+.|++++|.+++...
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCCCCCH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCCcHHH
Confidence 6666666666665544332 2233 4677777777776642 111 2333 3467777777777766544
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.72 E-value=1.7e-07 Score=68.91 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=24.8
Q ss_pred ccccEEEeccCchhhcc-CCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCC
Q 033463 19 QLLQISWILCHLVYYFT-GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFK 75 (118)
Q Consensus 19 ~~L~~L~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~ 75 (118)
++|+.|+++++....+. .+++|+.|++++|.++. +|. .+++|++|++++|.+.
T Consensus 61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC
Confidence 45566666544322221 34555555555555542 222 3344444444444444
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.66 E-value=8.7e-08 Score=70.37 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=43.8
Q ss_pred ccccEEEeccCchhhc-cCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCC
Q 033463 19 QLLQISWILCHLVYYF-TGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 97 (118)
Q Consensus 19 ~~L~~L~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N 97 (118)
++|+.|++++|....+ ..+++|+.|++++|.++. +|. .+++|+.|++++|.+. .+|. .+.++++|+.+++++|
T Consensus 221 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEGN 294 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCG-GGGGSCTTCEEECCSC
T ss_pred CCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCH-HHhhccccCEEEecCC
Confidence 3445555554332222 234556666666666553 232 3456666666666666 3443 3666677777777777
Q ss_pred CCCCCCc
Q 033463 98 EIDNLVV 104 (118)
Q Consensus 98 ~l~~~~~ 104 (118)
++++..+
T Consensus 295 ~l~~~~~ 301 (622)
T 3g06_A 295 PLSERTL 301 (622)
T ss_dssp CCCHHHH
T ss_pred CCCCcCH
Confidence 6665443
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.62 E-value=7.1e-08 Score=64.12 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=54.1
Q ss_pred CCCCCCEEecCCCcCCc--cccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCc
Q 033463 36 GLSKLKSLGLAGIKLNR--SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 104 (118)
Q Consensus 36 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~ 104 (118)
.+++|+.|+++.|.+.+ .+|..+..+++|+.|++++|.+.+......+..+ +|+.|++++|.+.+..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence 57899999999999987 3345567899999999999999965333334444 99999999999987443
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.50 E-value=1.3e-08 Score=71.37 Aligned_cols=66 Identities=24% Similarity=0.207 Sum_probs=33.7
Q ss_pred CCCCCCEEecCCCcCCccccccccC-----CCCCcEEecCCCCCCC----CCChhhhcCCCCCCEEEcCCCCCCCC
Q 033463 36 GLSKLKSLGLAGIKLNRSILSSLTV-----FSSLRELHLRDTGFKG----TFDVREFDSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 36 ~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~l~ls~n~l~~----~~~~~~~~~l~~L~~l~ls~N~l~~~ 102 (118)
.+++|+.|++++|.+....+..+.. .++|++|++++|.+.+ .++. .+..+++|+.+++++|++++.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCHH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCCCCCCHH
Confidence 3455555555555554432222211 3456666666666553 2222 245556666666666666543
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.37 E-value=8.5e-08 Score=69.12 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=67.1
Q ss_pred cccccCccccEEEec---cCc----hhhc-cCCCCCCEEecCCCcCCcc-ccccccCCCCCcEEecCCCCCCCCCChhhh
Q 033463 13 NTIKKCQLLQISWIL---CHL----VYYF-TGLSKLKSLGLAGIKLNRS-ILSSLTVFSSLRELHLRDTGFKGTFDVREF 83 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~---~~~----~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~ 83 (118)
..+..+++|+.|+++ +.. +..+ ..+++|+.|+++.|.+++. .+..+..+++|+.|++++|.+.+.......
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 336678899999984 211 2333 3488999999999998763 344557889999999999998644222235
Q ss_pred cCCCCCCEEEcCCCCCCCC
Q 033463 84 DSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 84 ~~l~~L~~l~ls~N~l~~~ 102 (118)
..+++|+.|++++|++++.
T Consensus 510 ~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHCSSCCEEEEESCBCCTT
T ss_pred HhcCccCeeECcCCcCCHH
Confidence 6789999999999998876
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=5.8e-07 Score=59.70 Aligned_cols=76 Identities=25% Similarity=0.261 Sum_probs=58.0
Q ss_pred ccCccccEEEeccCchh-------hccCCCCCCEEecCCCcCCccccccccCCC--CCcEEecCCCCCCCCCCh------
Q 033463 16 KKCQLLQISWILCHLVY-------YFTGLSKLKSLGLAGIKLNRSILSSLTVFS--SLRELHLRDTGFKGTFDV------ 80 (118)
Q Consensus 16 ~~l~~L~~L~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~l~ls~n~l~~~~~~------ 80 (118)
..+++|+.|+++.|... .+..+++|+.|++++|.+.+. ..+..+. +|++|++++|.+.+..+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45789999999976643 334789999999999999864 2344343 999999999999865441
Q ss_pred hhhcCCCCCCEEE
Q 033463 81 REFDSFNNLEVLD 93 (118)
Q Consensus 81 ~~~~~l~~L~~l~ 93 (118)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2377789999885
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.35 E-value=1.2e-07 Score=66.39 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=31.6
Q ss_pred ccccccCccccEEEeccCchh----------hccCCCCCCEEecCCCcCCcc----ccccccCCCCCcEEecCCCCCC
Q 033463 12 TNTIKKCQLLQISWILCHLVY----------YFTGLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFK 75 (118)
Q Consensus 12 p~~~~~l~~L~~L~l~~~~~~----------~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~ls~n~l~ 75 (118)
+..+..+++|+.|+++++... .+..+++|+.|++++|.++.. .+..+..+++|++|++++|.+.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 344445566666666644311 112355566666666655542 2333444555555555555553
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=1.6e-06 Score=58.71 Aligned_cols=89 Identities=16% Similarity=0.030 Sum_probs=70.6
Q ss_pred CccccEEEeccCc-----hhhccCCCCCCEEecCCCcCCccccccccCCCCCc-EEecCCCCCCCCCChhhhcCCCCCCE
Q 033463 18 CQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLR-ELHLRDTGFKGTFDVREFDSFNNLEV 91 (118)
Q Consensus 18 l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~l~ls~n~l~~~~~~~~~~~l~~L~~ 91 (118)
+++|+.++++.+. ...|.++++|+.+++..| +....+..|..+++|+ .+++.+ .+. .++...|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence 6789999998643 345778899999999887 6666667788999999 999988 666 344446999999999
Q ss_pred EEcCCCCCCCCCcCCCCC
Q 033463 92 LDLSWNEIDNLVVPQGKQ 109 (118)
Q Consensus 92 l~ls~N~l~~~~~~~~~~ 109 (118)
++++.|.++.+.......
T Consensus 302 l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGN 319 (329)
T ss_dssp EEECSSCCCEECTTTTCT
T ss_pred EEeCCCccCccchhhhcC
Confidence 999999998888775543
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.29 E-value=7.9e-07 Score=61.52 Aligned_cols=85 Identities=20% Similarity=0.183 Sum_probs=47.1
Q ss_pred CccccEEEeccCch---------hhccCCCCCCEEecCCCcCCccc----cccccCCCCCcEEecCCCCCCCCCCh---h
Q 033463 18 CQLLQISWILCHLV---------YYFTGLSKLKSLGLAGIKLNRSI----LSSLTVFSSLRELHLRDTGFKGTFDV---R 81 (118)
Q Consensus 18 l~~L~~L~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~l~ls~n~l~~~~~~---~ 81 (118)
.++|+.|+++++.. ..+...++|+.|++++|.+.... +..+...++|+.|++++|.+.+.... .
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 34566666664432 12345566777777777665421 33344556677777777776632110 1
Q ss_pred hhcCCCCCCEEEcCCCCCCCC
Q 033463 82 EFDSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 82 ~~~~l~~L~~l~ls~N~l~~~ 102 (118)
.+...++|+.|++++|.+++.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHH
T ss_pred HHHhCCCCCEEeccCCCCCHH
Confidence 233456677777777776543
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=2.7e-06 Score=57.52 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=69.7
Q ss_pred ecCCCccccccCccccEEEeccCc----hhhccCCCCCC-EEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChh
Q 033463 7 VSKGTTNTIKKCQLLQISWILCHL----VYYFTGLSKLK-SLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVR 81 (118)
Q Consensus 7 ~~~~~p~~~~~l~~L~~L~l~~~~----~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~ 81 (118)
+....+..|..+++|+.+++..+. ...|.++++|+ .+.+.. .+....+..|..+++|+.+++++|.+. .++..
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~ 315 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDE 315 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTT
T ss_pred cceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchh
Confidence 444455668899999999998553 45688899999 999988 676666788999999999999999998 44444
Q ss_pred hhcCCCCCCEEEc
Q 033463 82 EFDSFNNLEVLDL 94 (118)
Q Consensus 82 ~~~~l~~L~~l~l 94 (118)
.|.++++|+.++.
T Consensus 316 aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 316 LFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCCCEEEC
T ss_pred hhcCCcchhhhcc
Confidence 6999999998863
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.14 E-value=2.2e-07 Score=66.91 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=50.8
Q ss_pred cccCccccEEEeccCc----hhhccC-CCCCCEEecCCCcCCccccccc-cCCCCCcEEecCCCCCCCCCChhhhcCCCC
Q 033463 15 IKKCQLLQISWILCHL----VYYFTG-LSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNN 88 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~----~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~ 88 (118)
+..+++|+.|+++++. +..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+.+.........+++
T Consensus 428 ~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred HhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 4456667777776432 222333 6677777777777765434333 456777777777777743222222344677
Q ss_pred CCEEEcCCCCC
Q 033463 89 LEVLDLSWNEI 99 (118)
Q Consensus 89 L~~l~ls~N~l 99 (118)
|+.|++++|.+
T Consensus 508 L~~L~l~~~~~ 518 (594)
T 2p1m_B 508 MRSLWMSSCSV 518 (594)
T ss_dssp SSEEEEESSCC
T ss_pred CCEEeeeCCCC
Confidence 77777777766
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.11 E-value=5e-06 Score=52.07 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=59.5
Q ss_pred ccccCccccEEEeccC-c---------hhhccCCCCCCEEecCCCcCCccc----cccccCCCCCcEEecCCCCCCCCC-
Q 033463 14 TIKKCQLLQISWILCH-L---------VYYFTGLSKLKSLGLAGIKLNRSI----LSSLTVFSSLRELHLRDTGFKGTF- 78 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~-~---------~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~l~ls~n~l~~~~- 78 (118)
.+...+.|++|+++++ . ...+...++|+.|++++|.+.... ...+...++|++|++++|.+.+.-
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455677888888866 3 223455678888888888886532 223444577888888888887431
Q ss_pred --ChhhhcCCCCCCEEEc--CCCCCCCC
Q 033463 79 --DVREFDSFNNLEVLDL--SWNEIDNL 102 (118)
Q Consensus 79 --~~~~~~~l~~L~~l~l--s~N~l~~~ 102 (118)
-...+...++|+.|++ ++|.+...
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 0123666678888888 77887653
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=5.1e-06 Score=52.01 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=65.6
Q ss_pred cccccCccccEEEeccCch---------hhccCCCCCCEEecCCCcCCcc----ccccccCCCCCcEEec--CCCCCCCC
Q 033463 13 NTIKKCQLLQISWILCHLV---------YYFTGLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHL--RDTGFKGT 77 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l--s~n~l~~~ 77 (118)
..+...++|++|+++++.. ..+...++|+.|++++|.+... +...+...++|++|++ ++|.+.+.
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 3455668899999996652 2344568899999999999863 3445666789999999 88999843
Q ss_pred CC---hhhhcCCCCCCEEEcCCCCCC
Q 033463 78 FD---VREFDSFNNLEVLDLSWNEID 100 (118)
Q Consensus 78 ~~---~~~~~~l~~L~~l~ls~N~l~ 100 (118)
-. ...+...++|+.|++++|.+.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 21 123556689999999999875
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.94 E-value=1.4e-06 Score=60.33 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=49.7
Q ss_pred CccccEEEeccCch-----hhc-----cCCCCCCEEecCCCcCCcc----ccccccCCCCCcEEecCCCCCCCCCC---h
Q 033463 18 CQLLQISWILCHLV-----YYF-----TGLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---V 80 (118)
Q Consensus 18 l~~L~~L~l~~~~~-----~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~ls~n~l~~~~~---~ 80 (118)
+++|+.|+++++.. ..+ ...++|+.|++++|.++.. ++..+...++|++|++++|.+.+... .
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 44566666664432 111 2346677777777777542 22333556777777777777763210 1
Q ss_pred hhhcCCCCCCEEEcCCCCCCCC
Q 033463 81 REFDSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 81 ~~~~~l~~L~~l~ls~N~l~~~ 102 (118)
..+...++|+.|++++|.+++.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCCcCeEECCCCCCCHH
Confidence 2355566788888888777653
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=1.8e-05 Score=49.39 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=63.1
Q ss_pred CccccccCccccEEEeccCc-----hhhccCCCCCCEEecCCCc-CCccccccccCC----CCCcEEecCCCC-CCCCCC
Q 033463 11 TTNTIKKCQLLQISWILCHL-----VYYFTGLSKLKSLGLAGIK-LNRSILSSLTVF----SSLRELHLRDTG-FKGTFD 79 (118)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~~~-----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~l~ls~n~-l~~~~~ 79 (118)
+|.....-..|+.|++++.. ...+..+++|+.|++++|. ++...-..+..+ ++|++|++++|. +++.-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G- 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG- 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-
Confidence 44433233468999998543 3456789999999999984 776544455554 479999999986 66322
Q ss_pred hhhhcCCCCCCEEEcCCCC-CCC
Q 033463 80 VREFDSFNNLEVLDLSWNE-IDN 101 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N~-l~~ 101 (118)
...+..+++|+.|+++++. ++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 2347789999999999874 443
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.77 E-value=8.3e-06 Score=58.72 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=37.0
Q ss_pred cCccccEEEeccCc-------hhhccCCCCCCEEecCCCcCCccccccc----cCCCCCcEEecCCCC--CCCCCChhhh
Q 033463 17 KCQLLQISWILCHL-------VYYFTGLSKLKSLGLAGIKLNRSILSSL----TVFSSLRELHLRDTG--FKGTFDVREF 83 (118)
Q Consensus 17 ~l~~L~~L~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~l~ls~n~--l~~~~~~~~~ 83 (118)
.+++|+.|+++++. +.....+++|+.|++++|.+++..+..+ ..+++|+.|++++|. +.........
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 34555555555331 1222345666666666665543322222 234566666666654 1100000112
Q ss_pred cCCCCCCEEEcCCC
Q 033463 84 DSFNNLEVLDLSWN 97 (118)
Q Consensus 84 ~~l~~L~~l~ls~N 97 (118)
..+++|+.|++++|
T Consensus 208 ~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 208 TRCPNLKSLKLNRA 221 (594)
T ss_dssp HHCTTCCEEECCTT
T ss_pred HhCCCCcEEecCCC
Confidence 23466666666655
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.66 E-value=4.5e-05 Score=54.93 Aligned_cols=56 Identities=9% Similarity=0.035 Sum_probs=30.1
Q ss_pred ccccCccccEEEeccCc---------hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecC
Q 033463 14 TIKKCQLLQISWILCHL---------VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLR 70 (118)
Q Consensus 14 ~~~~l~~L~~L~l~~~~---------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls 70 (118)
....+++|+.|+++.+. +..+..+++|+.|++++|.+.+ .+..+..+++|++++++
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 34556677777776332 1223456777777777766553 23334444444444443
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.64 E-value=0.0003 Score=49.11 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=61.4
Q ss_pred ccccccCccccEEEeccCc----------hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChh
Q 033463 12 TNTIKKCQLLQISWILCHL----------VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVR 81 (118)
Q Consensus 12 p~~~~~l~~L~~L~l~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~ 81 (118)
...|..+++|+.+.+.++. ...|.++++|+.+.+. +.+.......|..+++|+.+.+..+ +. .+...
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~ 340 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFS 340 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EECTT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEcHH
Confidence 4456677777877776322 2356677788888877 3455555566777888888888655 44 33334
Q ss_pred hhcCCCCCCEEEcCCCCCCCCCcCCC
Q 033463 82 EFDSFNNLEVLDLSWNEIDNLVVPQG 107 (118)
Q Consensus 82 ~~~~l~~L~~l~ls~N~l~~~~~~~~ 107 (118)
.|.+. +|+.+++.+|.+........
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred hCCCC-CCCEEEEcCCCCcccccccc
Confidence 58877 88888888887766555433
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.46 E-value=0.00056 Score=40.41 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=15.8
Q ss_pred CCEEecCCCcCCccccccccCCCCCcEEecCCCCC
Q 033463 40 LKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGF 74 (118)
Q Consensus 40 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l 74 (118)
++.|++++|.++...+..|..+++|+.+++++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333344444444444444444
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.26 E-value=0.0002 Score=49.46 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=18.7
Q ss_pred CCCCcEEecCCCCCCCCCChhh--hcCCCCCCEEEcCCCCCCC
Q 033463 61 FSSLRELHLRDTGFKGTFDVRE--FDSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 61 l~~L~~l~ls~n~l~~~~~~~~--~~~l~~L~~l~ls~N~l~~ 101 (118)
+++|+.|++.+|.+.+...... ...+++|+.|+++.|.+.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 4555555555555542211110 1124455555555555544
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.19 E-value=0.0023 Score=44.64 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=43.3
Q ss_pred hhccCCCCCCEEecCCCcCC-----ccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcC
Q 033463 32 YYFTGLSKLKSLGLAGIKLN-----RSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 32 ~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~ 105 (118)
..|.++++|+.+.+..+.+. ...+..|..+++|+.+.+.+ .+. .++...|.++++|+.+.+..| ++.+...
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 34556777777777666543 23345567777777777773 355 344445777777877777544 5444443
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.05 E-value=0.0003 Score=43.87 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=48.2
Q ss_pred cccccCccccEEEeccCc------hhhccCC----CCCCEEecCCC-cCCccccccccCCCCCcEEecCCCCCC
Q 033463 13 NTIKKCQLLQISWILCHL------VYYFTGL----SKLKSLGLAGI-KLNRSILSSLTVFSSLRELHLRDTGFK 75 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~------~~~~~~l----~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~ls~n~l~ 75 (118)
..+..+++|+.|+++++. ...+..+ ++|+.|++++| +++..--..+..+++|+.|++++|.-.
T Consensus 79 ~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 79 DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 446789999999999543 3345553 47999999998 487655566778999999999999743
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.91 E-value=0.0012 Score=38.95 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=42.7
Q ss_pred CEEecCCCcCC-ccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCC
Q 033463 41 KSLGLAGIKLN-RSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN 101 (118)
Q Consensus 41 ~~L~l~~n~l~-~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~ 101 (118)
..++-+++.++ ..+|.. -.++++.|++++|.++. ++...|..+++|+.++|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCeec
Confidence 36677777775 133432 23579999999999995 444468999999999999998753
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.76 E-value=0.0017 Score=44.81 Aligned_cols=55 Identities=22% Similarity=0.132 Sum_probs=25.6
Q ss_pred cccCccccEEEeccCc---hhhccCCCCCCEEecCCCcCCcccccccc--CCCCCcEEecC
Q 033463 15 IKKCQLLQISWILCHL---VYYFTGLSKLKSLGLAGIKLNRSILSSLT--VFSSLRELHLR 70 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~l~ls 70 (118)
+..+++|+.|+++++. .+.+ .+++|+.|++..+.+.......+. .+++|+.|+++
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3445555555555331 0111 245566666655555432222222 45666666653
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.71 E-value=0.015 Score=39.98 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=36.1
Q ss_pred hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCC
Q 033463 33 YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNE 98 (118)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~ 98 (118)
.|.++.+|+.+.+..+ ++......|..+.+|+.+.+..+ +. .+...+|.+..+|+.+++.++.
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 3455666666666543 33333445666677777776544 33 3333357777777777776553
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.63 E-value=0.0072 Score=41.67 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=48.0
Q ss_pred cccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCC
Q 033463 15 IKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE 90 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~ 90 (118)
+..+.+|+.+.+..+. ...|.++.+|+.+.+..+ ++......|..+.+|+.+.+..+ +. .+...+|.+..+|+
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCC
T ss_pred ccccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCC
Confidence 4455566666665221 234566777777777543 44344556777777777777665 44 33334577777777
Q ss_pred EEEcCCC
Q 033463 91 VLDLSWN 97 (118)
Q Consensus 91 ~l~ls~N 97 (118)
.+++..+
T Consensus 370 ~i~lp~~ 376 (394)
T 4fs7_A 370 KVELPKR 376 (394)
T ss_dssp EEEEEGG
T ss_pred EEEECCC
Confidence 7777543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.61 E-value=0.0092 Score=40.76 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=36.3
Q ss_pred hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCC
Q 033463 33 YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 96 (118)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~ 96 (118)
.|.++++|+.+.+..+.++......|..+.+|+.+.+..+ ++ .+...+|.+..+|+.+.+..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 3455666777766666555444555666677777776544 33 23333466666666666643
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.14 E-value=0.0089 Score=37.87 Aligned_cols=81 Identities=12% Similarity=0.017 Sum_probs=52.6
Q ss_pred cCccccEEEeccC-c---------hhhccCCCCCCEEecCCCcCCcccccc----ccCCCCCcEEecCCCCCCCCCC---
Q 033463 17 KCQLLQISWILCH-L---------VYYFTGLSKLKSLGLAGIKLNRSILSS----LTVFSSLRELHLRDTGFKGTFD--- 79 (118)
Q Consensus 17 ~l~~L~~L~l~~~-~---------~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~l~ls~n~l~~~~~--- 79 (118)
.-+.|++|+++.+ . -+.+..-+.|+.|+++.|.+....... +..-+.|++|++++|.+.+.--
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456888888753 2 122444577889999999887533322 3344778999999999874311
Q ss_pred hhhhcCCCCCCEEEcCCC
Q 033463 80 VREFDSFNNLEVLDLSWN 97 (118)
Q Consensus 80 ~~~~~~l~~L~~l~ls~N 97 (118)
.+.+..-+.|+.|++++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 123555667899988765
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.95 E-value=0.074 Score=36.21 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=56.9
Q ss_pred cccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCC
Q 033463 15 IKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE 90 (118)
Q Consensus 15 ~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~ 90 (118)
+..+..|+.+.+..+. ...+.++.+++.+.+..+ +.......|..+++|+.+.+.++.+. .++...|.+..+|+
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCC
Confidence 3445566666665321 234556777777777543 33333456778899999999888887 44444688889999
Q ss_pred EEEcCCCCCCCCCcC
Q 033463 91 VLDLSWNEIDNLVVP 105 (118)
Q Consensus 91 ~l~ls~N~l~~~~~~ 105 (118)
.+.+..+ ++.+...
T Consensus 314 ~i~lp~~-l~~I~~~ 327 (379)
T 4h09_A 314 SVTLPTA-LKTIQVY 327 (379)
T ss_dssp EEECCTT-CCEECTT
T ss_pred EEEcCcc-ccEEHHH
Confidence 9998654 4444443
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.78 E-value=0.11 Score=35.75 Aligned_cols=89 Identities=11% Similarity=0.186 Sum_probs=62.5
Q ss_pred cccccCccccEEEeccCc----hhhccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCC
Q 033463 13 NTIKKCQLLQISWILCHL----VYYFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNN 88 (118)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~ 88 (118)
..|..+..|+.+.+.... ...+.+++.|+.+.+.. .+.......|..+.+|+.+.+..+ +. .+....|.+..+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTT
T ss_pred ceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCC
Confidence 346667788888886322 34567788899998864 444444567888999999999865 44 344446999999
Q ss_pred CCEEEcCCCCCCCCCcC
Q 033463 89 LEVLDLSWNEIDNLVVP 105 (118)
Q Consensus 89 L~~l~ls~N~l~~~~~~ 105 (118)
|+.+.+..+ ++.+...
T Consensus 336 L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPES 351 (394)
T ss_dssp CCEEEECTT-CCBCCGG
T ss_pred CCEEEECcc-cCEEhHh
Confidence 999999754 5555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.48 E-value=0.02 Score=36.29 Aligned_cols=68 Identities=12% Similarity=0.244 Sum_probs=50.1
Q ss_pred cCCCCCCEEecCCC-cCCcc----ccccccCCCCCcEEecCCCCCCCCCC---hhhhcCCCCCCEEEcCCCCCCCC
Q 033463 35 TGLSKLKSLGLAGI-KLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDNL 102 (118)
Q Consensus 35 ~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~l~ls~n~l~~~~~---~~~~~~l~~L~~l~ls~N~l~~~ 102 (118)
..-+.|+.|+++.| .+... +.+.+..-..|+.|++++|.+.+.-- ...+..-+.|+.|+|+.|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 34578999999985 77642 33445556889999999999983311 12355668999999999999764
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.60 E-value=0.25 Score=33.92 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=49.2
Q ss_pred hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCCCCCCCCCChhhhcCCCCCCEEEcCCCCCCCCCcCC
Q 033463 33 YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 106 (118)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~~~~~~~~~l~~L~~l~ls~N~l~~~~~~~ 106 (118)
.+..+.+|+.+.+..+ +.......|..+.+|+.+++..+ +. .+...+|.+..+|+.+++..| ++.+....
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence 3556777888877654 44344566888899999999754 55 344446999999999999866 66555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.15 E-value=42 Score=18.28 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=17.5
Q ss_pred hccCCCCCCEEecCCCcCCccccccccCCCCCcEEecCC
Q 033463 33 YFTGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRD 71 (118)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~ 71 (118)
.|.++.+|+.+.+..+ ++..-...|..+.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3445555555555432 1212233455555555555543
Done!