Query 033465
Match_columns 118
No_of_seqs 106 out of 774
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:34:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13881 Rad60-SLD_2: Ubiquiti 100.0 8.5E-32 1.8E-36 187.5 10.1 111 6-116 1-111 (111)
2 cd01814 NTGP5 Ubiquitin-like N 100.0 1.7E-31 3.6E-36 185.7 8.1 112 4-115 1-113 (113)
3 cd01807 GDX_N ubiquitin-like d 99.8 4.6E-19 1E-23 114.1 7.5 74 8-95 1-74 (74)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 5.3E-19 1.1E-23 113.9 7.3 74 8-97 1-74 (74)
5 cd01790 Herp_N Homocysteine-re 99.8 7.6E-19 1.6E-23 115.9 7.3 75 7-92 1-78 (79)
6 cd01802 AN1_N ubiquitin-like d 99.8 1.2E-18 2.7E-23 119.7 7.9 79 5-97 25-103 (103)
7 cd01797 NIRF_N amino-terminal 99.8 3.1E-18 6.6E-23 112.1 7.3 75 8-96 1-77 (78)
8 cd01810 ISG15_repeat2 ISG15 ub 99.8 2.7E-18 5.9E-23 110.6 6.9 74 10-97 1-74 (74)
9 cd01794 DC_UbP_C dendritic cel 99.7 2.3E-18 5.1E-23 110.6 6.1 69 10-92 1-69 (70)
10 PTZ00044 ubiquitin; Provisiona 99.7 4.9E-18 1.1E-22 109.1 7.0 76 8-97 1-76 (76)
11 cd01798 parkin_N amino-termina 99.7 7.8E-18 1.7E-22 107.1 6.2 70 10-93 1-70 (70)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.3E-17 2.9E-22 108.1 6.9 70 8-91 2-71 (73)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 3.7E-17 8.1E-22 104.3 8.1 76 8-97 1-76 (76)
14 cd01804 midnolin_N Ubiquitin-l 99.7 5.4E-17 1.2E-21 105.9 7.6 75 8-97 2-76 (78)
15 cd01803 Ubiquitin Ubiquitin. U 99.7 5.2E-17 1.1E-21 103.6 7.1 76 8-97 1-76 (76)
16 cd01808 hPLIC_N Ubiquitin-like 99.7 7.4E-17 1.6E-21 103.0 6.7 71 8-93 1-71 (71)
17 cd01805 RAD23_N Ubiquitin-like 99.7 1.9E-16 4.1E-21 101.8 7.8 74 8-93 1-74 (77)
18 cd01809 Scythe_N Ubiquitin-lik 99.7 2.2E-16 4.7E-21 99.8 7.0 72 8-93 1-72 (72)
19 cd01792 ISG15_repeat1 ISG15 ub 99.7 2.2E-16 4.7E-21 103.2 6.8 75 7-95 2-78 (80)
20 PF00240 ubiquitin: Ubiquitin 99.7 2.6E-16 5.5E-21 99.2 6.7 68 13-94 1-68 (69)
21 KOG0005 Ubiquitin-like protein 99.6 1.3E-16 2.8E-21 100.2 3.9 70 8-91 1-70 (70)
22 cd01796 DDI1_N DNA damage indu 99.6 5.1E-16 1.1E-20 99.6 6.1 63 10-80 1-65 (71)
23 cd01800 SF3a120_C Ubiquitin-li 99.6 4.1E-16 8.9E-21 101.0 5.8 71 15-99 5-75 (76)
24 KOG0003 Ubiquitin/60s ribosoma 99.6 3.3E-17 7.2E-22 113.5 0.4 77 9-99 2-78 (128)
25 KOG0004 Ubiquitin/40S ribosoma 99.6 5.9E-16 1.3E-20 112.8 3.6 79 8-100 1-79 (156)
26 cd01763 Sumo Small ubiquitin-r 99.6 9.9E-15 2.2E-19 97.0 8.7 80 4-97 8-87 (87)
27 cd01812 BAG1_N Ubiquitin-like 99.6 9.7E-15 2.1E-19 92.2 6.6 69 8-91 1-69 (71)
28 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 7.3E-15 1.6E-19 96.0 4.8 58 26-93 18-75 (75)
29 KOG0010 Ubiquitin-like protein 99.5 1.1E-14 2.3E-19 121.8 6.8 77 7-98 15-91 (493)
30 TIGR00601 rad23 UV excision re 99.5 4.8E-14 1E-18 115.7 7.8 68 8-80 1-68 (378)
31 cd01813 UBP_N UBP ubiquitin pr 99.5 1.5E-13 3.2E-18 89.1 6.4 63 9-80 2-67 (74)
32 smart00213 UBQ Ubiquitin homol 99.4 3.1E-13 6.7E-18 82.8 5.7 63 8-79 1-63 (64)
33 KOG0011 Nucleotide excision re 99.4 3.3E-13 7.3E-18 108.4 6.4 67 8-80 1-67 (340)
34 cd01799 Hoil1_N Ubiquitin-like 99.4 1.7E-12 3.7E-17 84.4 6.4 68 9-91 4-73 (75)
35 cd01769 UBL Ubiquitin-like dom 99.2 4.4E-11 9.4E-16 74.0 6.5 61 12-80 2-62 (69)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 1.3E-10 2.9E-15 73.6 5.6 72 8-92 1-72 (72)
37 KOG4248 Ubiquitin-like protein 99.1 1.5E-10 3.2E-15 103.7 6.3 75 8-97 3-77 (1143)
38 cd01795 USP48_C USP ubiquitin- 99.0 1.5E-09 3.2E-14 74.6 6.0 65 19-97 16-81 (107)
39 PF10302 DUF2407: DUF2407 ubiq 99.0 2E-09 4.2E-14 73.5 6.6 88 10-117 3-94 (97)
40 cd01789 Alp11_N Ubiquitin-like 98.9 9.4E-09 2E-13 67.9 7.7 72 8-93 2-81 (84)
41 KOG0001 Ubiquitin and ubiquiti 98.8 3.6E-08 7.7E-13 60.1 7.9 72 10-95 2-73 (75)
42 PLN02560 enoyl-CoA reductase 98.7 4.2E-08 9.2E-13 78.8 6.8 78 8-99 1-87 (308)
43 cd01788 ElonginB Ubiquitin-lik 98.7 7.9E-08 1.7E-12 67.4 6.3 79 7-94 2-81 (119)
44 cd01801 Tsc13_N Ubiquitin-like 98.5 2.8E-07 6E-12 59.6 5.9 48 26-79 20-69 (77)
45 PF14560 Ubiquitin_2: Ubiquiti 98.5 5.5E-07 1.2E-11 59.4 6.6 71 8-92 2-82 (87)
46 cd00196 UBQ Ubiquitin-like pro 98.2 1E-05 2.2E-10 46.3 6.9 60 13-80 3-62 (69)
47 KOG0006 E3 ubiquitin-protein l 97.9 1.9E-05 4.2E-10 64.3 5.5 64 8-79 3-67 (446)
48 PF00789 UBX: UBX domain; Int 97.9 0.00014 3.1E-09 46.9 8.5 71 2-79 1-75 (82)
49 PF11543 UN_NPL4: Nuclear pore 97.9 3.2E-05 6.9E-10 50.9 5.3 65 6-80 3-73 (80)
50 cd01811 OASL_repeat1 2'-5' oli 97.8 5.6E-05 1.2E-09 49.5 5.6 61 8-77 1-66 (80)
51 cd01770 p47_UBX p47-like ubiqu 97.7 0.00036 7.9E-09 45.6 8.4 67 5-78 2-71 (79)
52 KOG4495 RNA polymerase II tran 97.5 0.00021 4.6E-09 49.0 5.0 75 7-90 2-79 (110)
53 KOG1769 Ubiquitin-like protein 97.4 0.0014 3E-08 45.0 8.0 76 6-95 19-94 (99)
54 PF08817 YukD: WXG100 protein 97.4 0.00046 9.9E-09 44.7 5.4 72 7-80 2-74 (79)
55 cd01774 Faf1_like2_UBX Faf1 ik 97.4 0.0023 5.1E-08 42.4 8.3 66 5-79 2-77 (85)
56 cd01767 UBX UBX (ubiquitin reg 97.1 0.0057 1.2E-07 39.2 7.8 63 7-78 2-69 (77)
57 PF13019 Telomere_Sde2: Telome 97.0 0.0062 1.3E-07 45.1 8.3 84 8-100 1-91 (162)
58 smart00166 UBX Domain present 97.0 0.0067 1.5E-07 39.1 7.4 65 6-78 3-72 (80)
59 cd01772 SAKS1_UBX SAKS1-like U 96.9 0.0087 1.9E-07 38.8 7.8 64 6-78 3-71 (79)
60 KOG4583 Membrane-associated ER 96.9 0.00034 7.3E-09 57.2 0.8 82 6-97 8-91 (391)
61 COG5417 Uncharacterized small 96.3 0.035 7.6E-07 36.5 7.1 70 8-80 7-76 (81)
62 KOG0013 Uncharacterized conser 96.2 0.0075 1.6E-07 46.6 4.2 65 7-79 145-210 (231)
63 KOG1872 Ubiquitin-specific pro 96.0 0.012 2.5E-07 50.0 5.1 56 16-79 11-67 (473)
64 cd01771 Faf1_UBX Faf1 UBX doma 95.4 0.23 4.9E-06 32.4 8.4 67 4-79 1-72 (80)
65 cd01773 Faf1_like1_UBX Faf1 ik 95.1 0.14 3E-06 33.9 6.6 67 4-79 2-73 (82)
66 PF15044 CLU_N: Mitochondrial 95.1 0.065 1.4E-06 34.7 4.9 60 25-96 1-61 (76)
67 KOG3493 Ubiquitin-like protein 95.0 0.0069 1.5E-07 38.8 0.1 63 9-79 3-65 (73)
68 COG5227 SMT3 Ubiquitin-like pr 95.0 0.13 2.9E-06 35.0 6.3 66 7-80 24-89 (103)
69 KOG2086 Protein tyrosine phosp 92.9 0.26 5.6E-06 41.0 5.5 68 4-78 302-372 (380)
70 PF09379 FERM_N: FERM N-termin 91.9 1.7 3.6E-05 27.2 7.3 71 12-93 1-77 (80)
71 cd00754 MoaD Ubiquitin domain 90.6 1.6 3.6E-05 27.2 6.3 52 20-80 18-69 (80)
72 PF02597 ThiS: ThiS family; I 90.5 1.6 3.5E-05 27.0 6.1 54 19-80 13-66 (77)
73 PRK06437 hypothetical protein; 89.9 2.7 5.8E-05 26.3 6.8 48 16-80 9-56 (67)
74 PLN02799 Molybdopterin synthas 89.2 1.1 2.5E-05 28.5 4.8 56 16-80 16-71 (82)
75 TIGR01682 moaD molybdopterin c 89.1 3.7 8.1E-05 26.0 7.1 56 16-80 13-69 (80)
76 KOG3206 Alpha-tubulin folding 88.7 2 4.4E-05 33.4 6.5 58 23-93 17-81 (234)
77 TIGR01687 moaD_arch MoaD famil 86.8 6.2 0.00013 25.3 8.0 60 16-80 13-77 (88)
78 KOG1639 Steroid reductase requ 85.8 2.2 4.7E-05 34.1 5.3 66 23-99 17-83 (297)
79 PF11470 TUG-UBL1: GLUT4 regul 85.3 5 0.00011 25.3 5.9 58 14-79 3-60 (65)
80 PF00564 PB1: PB1 domain; Int 84.0 4.2 9.2E-05 25.5 5.3 48 7-62 1-48 (84)
81 smart00295 B41 Band 4.1 homolo 82.5 3.3 7.1E-05 29.9 4.9 64 7-77 3-72 (207)
82 smart00666 PB1 PB1 domain. Pho 82.3 6.3 0.00014 24.7 5.6 45 8-61 2-46 (81)
83 PRK08364 sulfur carrier protei 82.1 8.9 0.00019 23.9 6.1 45 19-80 15-59 (70)
84 cd06409 PB1_MUG70 The MUG70 pr 80.5 3.6 7.8E-05 27.4 4.0 32 10-42 3-34 (86)
85 PF14453 ThiS-like: ThiS-like 79.0 9.1 0.0002 23.6 5.2 44 16-80 6-49 (57)
86 PF08783 DWNN: DWNN domain; I 78.2 4 8.6E-05 26.5 3.6 32 10-41 1-33 (74)
87 cd06406 PB1_P67 A PB1 domain i 77.6 6.4 0.00014 26.0 4.5 44 10-63 5-48 (80)
88 PF10790 DUF2604: Protein of U 74.2 17 0.00036 23.4 5.5 69 15-94 3-72 (76)
89 PF10209 DUF2340: Uncharacteri 72.1 9.5 0.00021 27.1 4.5 56 24-79 21-100 (122)
90 PF12754 Blt1: Cell-cycle cont 70.7 1.4 3E-05 35.9 0.0 67 7-76 78-159 (309)
91 cd01787 GRB7_RA RA (RAS-associ 68.0 14 0.00031 24.6 4.4 62 8-74 3-68 (85)
92 PF02505 MCR_D: Methyl-coenzym 67.1 16 0.00034 27.0 4.9 53 7-74 67-120 (153)
93 TIGR02958 sec_mycoba_snm4 secr 66.5 31 0.00067 29.2 7.3 81 8-97 3-84 (452)
94 KOG4147 Uncharacterized conser 66.3 23 0.0005 24.9 5.4 77 1-79 1-105 (127)
95 cd00565 ThiS ThiaminS ubiquiti 66.1 16 0.00034 22.2 4.2 51 15-80 4-54 (65)
96 PF08337 Plexin_cytopl: Plexin 65.1 15 0.00032 32.1 5.2 80 7-94 189-290 (539)
97 cd01760 RBD Ubiquitin-like dom 63.9 17 0.00037 23.2 4.1 54 10-69 2-57 (72)
98 cd06407 PB1_NLP A PB1 domain i 60.1 20 0.00042 23.4 4.0 33 9-43 2-34 (82)
99 KOG0007 Splicing factor 3a, su 59.0 5.8 0.00013 32.2 1.6 49 15-71 290-339 (341)
100 TIGR03260 met_CoM_red_D methyl 58.9 27 0.00058 25.7 4.8 53 7-74 66-118 (150)
101 smart00144 PI3K_rbd PI3-kinase 58.8 54 0.0012 22.2 6.7 67 7-75 17-87 (108)
102 cd05992 PB1 The PB1 domain is 57.3 23 0.0005 21.9 3.9 33 9-43 2-35 (81)
103 PF00788 RA: Ras association ( 54.0 52 0.0011 20.5 6.1 57 8-70 3-69 (93)
104 PF08154 NLE: NLE (NUC135) dom 53.9 50 0.0011 20.3 5.9 56 7-67 1-59 (65)
105 PF11148 DUF2922: Protein of u 53.7 39 0.00084 20.9 4.4 31 7-38 2-35 (69)
106 smart00455 RBD Raf-like Ras-bi 53.5 49 0.0011 20.7 4.9 49 10-66 2-52 (70)
107 TIGR01683 thiS thiamine biosyn 52.9 49 0.0011 19.9 6.4 51 15-80 3-53 (64)
108 KOG1364 Predicted ubiquitin re 52.8 18 0.00039 30.0 3.4 64 8-78 278-346 (356)
109 PF06234 TmoB: Toluene-4-monoo 52.2 68 0.0015 21.4 7.1 56 23-79 19-76 (85)
110 PF14451 Ub-Mut7C: Mut7-C ubiq 51.9 64 0.0014 21.0 5.7 47 17-80 22-69 (81)
111 COG4055 McrD Methyl coenzyme M 50.9 46 0.001 24.6 5.0 52 8-74 76-128 (165)
112 PF00894 Luteo_coat: Luteoviru 49.6 42 0.00091 24.3 4.5 56 7-63 45-117 (138)
113 PF02192 PI3K_p85B: PI3-kinase 48.8 16 0.00035 23.8 2.2 19 23-41 4-22 (78)
114 PF14454 Prok_Ub: Prokaryotic 47.4 41 0.00088 21.3 3.7 31 11-44 9-39 (65)
115 cd06411 PB1_p51 The PB1 domain 47.3 40 0.00087 22.1 3.8 36 19-62 8-43 (78)
116 PF14533 USP7_C2: Ubiquitin-sp 47.3 55 0.0012 24.7 5.2 49 20-74 36-90 (213)
117 cd06408 PB1_NoxR The PB1 domai 46.9 76 0.0016 21.1 5.2 33 8-42 3-35 (86)
118 PF00794 PI3K_rbd: PI3-kinase 45.9 59 0.0013 21.5 4.7 69 5-75 14-85 (106)
119 PF04233 Phage_Mu_F: Phage Mu 45.9 13 0.00029 24.4 1.5 11 108-118 102-112 (112)
120 PF14941 OAF: Transcriptional 42.3 76 0.0016 25.0 5.2 57 3-66 23-79 (240)
121 PRK11130 moaD molybdopterin sy 42.0 80 0.0017 19.9 4.7 51 23-80 19-70 (81)
122 PF06200 tify: tify domain; I 42.0 28 0.00061 19.4 2.1 13 53-65 5-17 (36)
123 COG5100 NPL4 Nuclear pore prot 39.9 1.9E+02 0.0041 25.0 7.6 65 9-80 2-72 (571)
124 smart00143 PI3K_p85B PI3-kinas 39.8 31 0.00067 22.6 2.4 19 23-41 4-22 (78)
125 KOG3391 Transcriptional co-rep 39.7 27 0.00058 25.5 2.2 62 28-96 61-139 (151)
126 PRK05863 sulfur carrier protei 38.8 90 0.002 18.9 5.3 50 15-80 5-54 (65)
127 KOG0012 DNA damage inducible p 38.5 70 0.0015 26.8 4.8 57 16-80 11-69 (380)
128 PRK05659 sulfur carrier protei 38.0 90 0.0019 18.6 5.0 51 15-80 5-55 (66)
129 cd06396 PB1_NBR1 The PB1 domai 37.7 85 0.0018 20.6 4.3 32 8-41 1-34 (81)
130 KOG2689 Predicted ubiquitin re 36.6 50 0.0011 26.7 3.6 35 6-41 209-243 (290)
131 PTZ00490 Ferredoxin superfamil 36.0 76 0.0016 22.9 4.2 30 4-34 32-61 (143)
132 KOG4250 TANK binding protein k 36.0 1.3E+02 0.0029 27.4 6.4 47 12-66 319-365 (732)
133 KOG4261 Talin [Cytoskeleton] 35.4 74 0.0016 29.6 4.8 67 8-80 4-76 (1003)
134 KOG2561 Adaptor protein NUB1, 34.9 39 0.00085 29.4 2.9 70 3-79 33-103 (568)
135 KOG2507 Ubiquitin regulatory p 32.7 1.2E+02 0.0025 26.3 5.3 68 5-78 312-382 (506)
136 cd01768 RA RA (Ras-associating 32.7 1.3E+02 0.0028 18.8 6.1 54 10-69 2-64 (87)
137 PF02196 RBD: Raf-like Ras-bin 32.6 1.3E+02 0.0028 18.8 6.7 59 10-74 3-61 (71)
138 PF11069 DUF2870: Protein of u 32.0 70 0.0015 21.9 3.2 18 57-74 3-20 (98)
139 TIGR02008 fdx_plant ferredoxin 30.7 1.2E+02 0.0025 19.9 4.2 29 8-37 3-31 (97)
140 PF11620 GABP-alpha: GA-bindin 30.6 1.4E+02 0.0031 20.0 4.5 67 23-100 7-73 (88)
141 COG1551 CsrA RNA-binding globa 30.2 1.3E+02 0.0028 19.5 4.1 35 6-41 16-50 (73)
142 PLN02593 adrenodoxin-like ferr 29.1 92 0.002 21.4 3.5 28 8-36 1-28 (117)
143 PF03633 Glyco_hydro_65C: Glyc 28.9 33 0.00071 20.0 1.1 20 42-66 3-22 (54)
144 KOG3309 Ferredoxin [Energy pro 28.2 1.1E+02 0.0023 22.7 3.9 30 6-36 42-71 (159)
145 cd01777 SNX27_RA Ubiquitin dom 28.2 1.2E+02 0.0026 20.3 3.8 34 7-41 1-34 (87)
146 PTZ00380 microtubule-associate 26.7 80 0.0017 22.3 2.9 45 23-74 45-89 (121)
147 PRK11840 bifunctional sulfur c 26.4 2.6E+02 0.0056 23.0 6.2 51 15-80 5-55 (326)
148 PRK06944 sulfur carrier protei 24.8 1.6E+02 0.0035 17.4 6.9 50 15-80 5-54 (65)
149 PRK06488 sulfur carrier protei 24.0 1.7E+02 0.0037 17.4 6.2 50 15-80 5-54 (65)
150 PRK06083 sulfur carrier protei 23.9 2.1E+02 0.0046 18.5 7.1 57 8-80 17-73 (84)
151 PF02824 TGS: TGS domain; Int 23.8 1.6E+02 0.0034 17.6 3.5 29 10-41 1-29 (60)
152 cd06410 PB1_UP2 Uncharacterize 21.9 1.5E+02 0.0033 19.9 3.4 29 12-41 17-45 (97)
153 PF13670 PepSY_2: Peptidase pr 21.4 1.5E+02 0.0032 18.6 3.2 22 7-29 55-76 (83)
154 PF11816 DUF3337: Domain of un 20.6 1.4E+02 0.0031 24.1 3.6 53 23-75 252-312 (331)
155 smart00314 RA Ras association 20.1 2.4E+02 0.0052 17.7 4.1 24 17-41 15-38 (90)
No 1
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.97 E-value=8.5e-32 Score=187.51 Aligned_cols=111 Identities=49% Similarity=0.924 Sum_probs=84.8
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
+.|+|+|++.+|.++.++.|++++||++||+.|+++||.+|+..|.+++++||||+||+|+|++||++++++.+++|+.+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 47999999999995556999999999999999999999999988889999999999999999999999999998876778
Q ss_pred EEEEEEeCCCCchhhhhhhccCCCCCCeEEe
Q 033465 86 TTMHVVVQPPSTEKAEKKAASQPKQNKCVCV 116 (118)
Q Consensus 86 ~tmhlv~~~~~~~~~~~~~~~~~~~~~c~C~ 116 (118)
++|||+++++.+.+++.+...+.++..|+|+
T Consensus 81 ~vmHlvvrp~~~~~~~~~~~~~~k~~~C~C~ 111 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNEEKKRKKPKQSGCSCC 111 (111)
T ss_dssp EEEEEEE-SSSSSSSSSS-----STT-----
T ss_pred EEEEEEecCCCCCccccccccCcCCCCCCCC
Confidence 9999999999998886545666888999996
No 2
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.97 E-value=1.7e-31 Score=185.69 Aligned_cols=112 Identities=68% Similarity=1.107 Sum_probs=104.8
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
+++.+.|+||+.+|.++.|+.+++++||++||++|+++||.+++++|.++++|||||+||+|+|+.||++|+++.|+.++
T Consensus 1 ~~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~ 80 (113)
T cd01814 1 VEEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAG 80 (113)
T ss_pred CCccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCC
Confidence 46889999999999999999999999999999999999999999998778999999999999999999999999888888
Q ss_pred CeEEEEEEeCCCCchhhh-hhhccCCCCCCeEE
Q 033465 84 GVTTMHVVVQPPSTEKAE-KKAASQPKQNKCVC 115 (118)
Q Consensus 84 ~~~tmhlv~~~~~~~~~~-~~~~~~~~~~~c~C 115 (118)
.++||||++|++.+.+++ +.+....++.+|+|
T Consensus 81 ~~~TmHvvlr~~~~~~~~~k~~~~~~~~~~c~c 113 (113)
T cd01814 81 GVITMHVVVQPPLADKKTEKKVDKAPKAVICTC 113 (113)
T ss_pred CceEEEEEecCCCCCccccccccCCcccCCCCC
Confidence 899999999999999885 77787888899988
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.79 E-value=4.6e-19 Score=114.08 Aligned_cols=74 Identities=26% Similarity=0.413 Sum_probs=66.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+||+.+|+++. +++++++||++||++|++ ..++| +++|||+|+||.|+|+.+|++|+|+++ .+
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tV~~lK~~i~~-----~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~------~~ 66 (74)
T cd01807 1 MFLTVKLLQGRECS-LQVSEKESVSTLKKLVSE-----HLNVP--EEQQRLLFKGKALADDKRLSDYSIGPN------AK 66 (74)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HHCCC--HHHeEEEECCEECCCCCCHHHCCCCCC------CE
Confidence 47899999999998 999999999999999964 46777 599999999999999999999999987 48
Q ss_pred EEEEeCCC
Q 033465 88 MHVVVQPP 95 (118)
Q Consensus 88 mhlv~~~~ 95 (118)
+|++++++
T Consensus 67 l~l~~~~~ 74 (74)
T cd01807 67 LNLVVRPP 74 (74)
T ss_pred EEEEEcCC
Confidence 89998863
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.78 E-value=5.3e-19 Score=113.90 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=64.2
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+||+ ++++. +++++++||++||++|+ +.+++| +++|||||+||.|+|+.+|++|+|+++ .|
T Consensus 1 mqi~vk~--~~~~~-l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~------~t 64 (74)
T cd01793 1 MQLFVRA--QNTHT-LEVTGQETVSDIKAHVA-----GLEGID--VEDQVLLLAGVPLEDDATLGQCGVEEL------CT 64 (74)
T ss_pred CEEEEEC--CCEEE-EEECCcCcHHHHHHHHH-----hhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCC------CE
Confidence 4677877 46777 99999999999999995 446777 599999999999999999999999976 58
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+|++++++++
T Consensus 65 l~l~~~l~GG 74 (74)
T cd01793 65 LEVAGRLLGG 74 (74)
T ss_pred EEEEEecCCC
Confidence 9999998875
No 5
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.78 E-value=7.6e-19 Score=115.85 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=61.9
Q ss_pred eeEEEEEeCCCceeee-eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccC--CCCCCCCC
Q 033465 7 QLEIKFRLTDGSDIGP-KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECR--SPLCDIPG 83 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~-~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~--i~~~~~p~ 83 (118)
.|.|.||+.+|+.+.. +++++++||++||++|++.+|. .| ++++|||||+||+|+|++||++|. +.++
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~----~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~---- 71 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPS----KP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEY---- 71 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCC----CC-ChhHeEEEEcCeeccchhhHHHHhhcccCC----
Confidence 3789999999999440 5558999999999999877542 23 259999999999999999999996 8765
Q ss_pred CeEEEEEEe
Q 033465 84 GVTTMHVVV 92 (118)
Q Consensus 84 ~~~tmhlv~ 92 (118)
.|||||.
T Consensus 72 --~tiHLV~ 78 (79)
T cd01790 72 --HMVHLVC 78 (79)
T ss_pred --ceEEEEe
Confidence 5999985
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.77 E-value=1.2e-18 Score=119.66 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=70.5
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
.+.++|+||+.+|+++. +++++++||++||++|++ .+++| +++|||+|+||.|+|+.+|++|+|.++
T Consensus 25 ~~~M~I~Vk~l~G~~~~-leV~~~~TV~~lK~kI~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~----- 91 (103)
T cd01802 25 YDTMELFIETLTGTCFE-LRVSPFETVISVKAKIQR-----LEGIP--VAQQHLIWNNMELEDEYCLNDYNISEG----- 91 (103)
T ss_pred CCCEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHH-----HhCCC--hHHEEEEECCEECCCCCcHHHcCCCCC-----
Confidence 35699999999999999 999999999999999964 45677 599999999999999999999999987
Q ss_pred eEEEEEEeCCCCc
Q 033465 85 VTTMHVVVQPPST 97 (118)
Q Consensus 85 ~~tmhlv~~~~~~ 97 (118)
.++|++++.+++
T Consensus 92 -stL~l~~~l~GG 103 (103)
T cd01802 92 -CTLKLVLAMRGG 103 (103)
T ss_pred -CEEEEEEecCCC
Confidence 488999988764
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.75 E-value=3.1e-18 Score=112.15 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=65.5
Q ss_pred eEEEEEeCCCce-eeeee-cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 8 LEIKFRLTDGSD-IGPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 8 i~i~~~~~~g~~-~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
++|+||+.+|++ +. ++ +++++||.+||++|.+ .+++| +++|||||+||+|+|+.+|++|||+++
T Consensus 1 M~I~vk~~~G~~~~~-l~~v~~~~TV~~lK~~i~~-----~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~------ 66 (78)
T cd01797 1 MWIQVRTMDGKETRT-VDSLSRLTKVEELREKIQE-----LFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLN------ 66 (78)
T ss_pred CEEEEEcCCCCEEEE-eeccCCcCcHHHHHHHHHH-----HhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCC------
Confidence 579999999997 56 85 8999999999999964 45677 599999999999999999999999987
Q ss_pred EEEEEEeCCCC
Q 033465 86 TTMHVVVQPPS 96 (118)
Q Consensus 86 ~tmhlv~~~~~ 96 (118)
.++|+++++.+
T Consensus 67 ~~i~l~~~~~~ 77 (78)
T cd01797 67 DIIQLLVRQDP 77 (78)
T ss_pred CEEEEEEecCC
Confidence 48899998764
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.75 E-value=2.7e-18 Score=110.57 Aligned_cols=74 Identities=23% Similarity=0.219 Sum_probs=65.7
Q ss_pred EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033465 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH 89 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmh 89 (118)
|+||+..|+++. +++++++||++||++|.+ ..++| +++|||+|+||.|+|+++|++|+|+++ .++|
T Consensus 1 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~-----~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~------~tl~ 66 (74)
T cd01810 1 ILVRNDKGRSSI-YEVQLTQTVATLKQQVSQ-----RERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPG------CTVF 66 (74)
T ss_pred CEEECCCCCEEE-EEECCcChHHHHHHHHHH-----HhCCC--HHHeEEEECCEECCCCCCHHHcCCCCC------CEEE
Confidence 578999999998 999999999999999953 45677 599999999999999999999999987 4888
Q ss_pred EEeCCCCc
Q 033465 90 VVVQPPST 97 (118)
Q Consensus 90 lv~~~~~~ 97 (118)
++++..++
T Consensus 67 l~~~l~gg 74 (74)
T cd01810 67 MNLRLRGG 74 (74)
T ss_pred EEEEccCC
Confidence 88887764
No 9
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.75 E-value=2.3e-18 Score=110.62 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=61.7
Q ss_pred EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033465 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH 89 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmh 89 (118)
++||+.+|+++. +++++++||++||++|++ .+++| +++|||||+||.|+|+.+|++|+|+.+ .++|
T Consensus 1 ~~vk~~~G~~~~-l~v~~~~TV~~lK~~I~~-----~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~------~tv~ 66 (70)
T cd01794 1 LKVRLSTGKDVK-LSVSSKDTVGQLKKQLQA-----AEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKD------YVVQ 66 (70)
T ss_pred CeEEcCCCCEEE-EEECCcChHHHHHHHHHH-----HhCCC--HHHeEEEECCeECCCCCCHHHcCCCCC------CEEE
Confidence 578999999999 999999999999999964 46677 599999999999999999999999965 4888
Q ss_pred EEe
Q 033465 90 VVV 92 (118)
Q Consensus 90 lv~ 92 (118)
|++
T Consensus 67 ~~~ 69 (70)
T cd01794 67 VIV 69 (70)
T ss_pred EEe
Confidence 876
No 10
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=4.9e-18 Score=109.15 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=67.6
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|.||+.+|+++. +++++++||++||++|.+. .++| +++|||+|+|+.|+|+.+|++|+++++ .+
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~------~~ 66 (76)
T PTZ00044 1 MQILIKTLTGKKQS-FNFEPDNTVQQVKMALQEK-----EGID--VKQIRLIYSGKQMSDDLKLSDYKVVPG------ST 66 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEEccCCCcHHHcCCCCC------CE
Confidence 47899999999998 9999999999999999644 5677 499999999999999999999999977 48
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+|+++++.++
T Consensus 67 i~l~~~~~gg 76 (76)
T PTZ00044 67 IHMVLQLRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 8998887764
No 11
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.73 E-value=7.8e-18 Score=107.15 Aligned_cols=70 Identities=27% Similarity=0.399 Sum_probs=62.5
Q ss_pred EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033465 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH 89 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmh 89 (118)
|.||+.+|.++. +++++++||++||++|++. .++| +++|||+|+|+.|+|+.+|++|+|+++ +++|
T Consensus 1 i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~------stl~ 66 (70)
T cd01798 1 VYVRTNTGHTFP-VEVDPDTDIKQLKEVVAKR-----QGVP--PDQLRVIFAGKELRNTTTIQECDLGQQ------SILH 66 (70)
T ss_pred CEEEcCCCCEEE-EEECCCChHHHHHHHHHHH-----HCCC--HHHeEEEECCeECCCCCcHHHcCCCCC------CEEE
Confidence 578999999998 9999999999999999644 5666 589999999999999999999999977 4889
Q ss_pred EEeC
Q 033465 90 VVVQ 93 (118)
Q Consensus 90 lv~~ 93 (118)
++.|
T Consensus 67 l~~~ 70 (70)
T cd01798 67 AVRR 70 (70)
T ss_pred EEeC
Confidence 9875
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.72 E-value=1.3e-17 Score=108.05 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=62.3
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
+.|+|++..|+.+. +++++++||++||++|++. .++| +++|||||+|++|+|+.+|++|||.+| .+
T Consensus 2 ~~i~vkt~~Gk~~~-~~v~~~~TV~~LK~~I~~~-----~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~------st 67 (73)
T cd01791 2 IEVVCNDRLGKKVR-VKCNPDDTIGDLKKLIAAQ-----TGTR--PEKIVLKKWYTIFKDHISLGDYEIHDG------MN 67 (73)
T ss_pred EEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHH-----hCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCC------CE
Confidence 68999999999998 9999999999999999755 2465 599999999999999999999999987 36
Q ss_pred EEEE
Q 033465 88 MHVV 91 (118)
Q Consensus 88 mhlv 91 (118)
+||.
T Consensus 68 v~l~ 71 (73)
T cd01791 68 LELY 71 (73)
T ss_pred EEEE
Confidence 7764
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.72 E-value=3.7e-17 Score=104.33 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=67.2
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++.+|+++. ++++++.||++||++|.+. .++| ++.|||+|+|+.|+|+.+|++|++.+| .+
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g------~~ 66 (76)
T cd01806 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDDKTAADYKLEGG------SV 66 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHhHh-----hCCC--hhhEEEEECCeEccCCCCHHHcCCCCC------CE
Confidence 47899999999998 9999999999999999644 4566 589999999999999999999999987 38
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+|++++.+++
T Consensus 67 i~l~~~~~gg 76 (76)
T cd01806 67 LHLVLALRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 8999887664
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.70 E-value=5.4e-17 Score=105.94 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=65.5
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++..|+.++ +++++++||++||++|+++ .++| +++|||+|+|+.|+|+ +|++|||+++ .+
T Consensus 2 m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~------~~ 66 (78)
T cd01804 2 MNLNIHSTTGTRFD-LSVPPDETVEGLKKRISQR-----LKVP--KERLALLHRETRLSSG-KLQDLGLGDG------SK 66 (78)
T ss_pred eEEEEEECCCCEEE-EEECCcCHHHHHHHHHHHH-----hCCC--hHHEEEEECCcCCCCC-cHHHcCCCCC------CE
Confidence 68999999999998 9999999999999999754 3455 5999999999999999 9999999987 37
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+|++....++
T Consensus 67 i~l~~~~~~~ 76 (78)
T cd01804 67 LTLVPTVEAG 76 (78)
T ss_pred EEEEeecccc
Confidence 8888877654
No 15
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.70 E-value=5.2e-17 Score=103.63 Aligned_cols=76 Identities=25% Similarity=0.378 Sum_probs=67.4
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|.|++.+|+.+. +++++++||++||++|.+. .++| ++.|||+|.|+.|+|+.+|++|++.++ .+
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~ 66 (76)
T cd01803 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (76)
T ss_pred CEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHHH-----hCCC--HHHeEEEECCEECCCCCcHHHcCCCCC------CE
Confidence 47899999999998 9999999999999999643 4666 589999999999999999999999977 48
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+|++++..++
T Consensus 67 i~l~~~~~gg 76 (76)
T cd01803 67 LHLVLRLRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 8999988764
No 16
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.69 E-value=7.4e-17 Score=103.00 Aligned_cols=71 Identities=24% Similarity=0.312 Sum_probs=61.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
+.|.|++.+|. .. ++++++.||++||++|++. .++| +++|||+|+||.|+|+.+|++||++++ .+
T Consensus 1 ~~i~vk~~~g~-~~-l~v~~~~TV~~lK~~I~~~-----~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~------st 65 (71)
T cd01808 1 IKVTVKTPKDK-EE-IEIAEDASVKDFKEAVSKK-----FKAN--QEQLVLIFAGKILKDTDTLTQHNIKDG------LT 65 (71)
T ss_pred CEEEEEcCCCC-EE-EEECCCChHHHHHHHHHHH-----hCCC--HHHEEEEECCeEcCCCCcHHHcCCCCC------CE
Confidence 46889999997 46 9999999999999999765 3455 599999999999999999999999977 47
Q ss_pred EEEEeC
Q 033465 88 MHVVVQ 93 (118)
Q Consensus 88 mhlv~~ 93 (118)
+|++++
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 888765
No 17
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.68 E-value=1.9e-16 Score=101.82 Aligned_cols=74 Identities=27% Similarity=0.343 Sum_probs=62.3
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++.+|+++. +++++++||++||++|.+. .+++.++++|||+|+|+.|+|+.+|++||+++|+ +
T Consensus 1 m~i~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~-----~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~------~ 68 (77)
T cd01805 1 MKITFKTLKQQTFP-IEVDPDDTVAELKEKIEEE-----KGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKD------F 68 (77)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHh-----hCCCCChhHeEEEECCEEccCCCCHHHcCCCCCC------E
Confidence 57899999999998 9999999999999999754 3451125999999999999999999999999874 5
Q ss_pred EEEEeC
Q 033465 88 MHVVVQ 93 (118)
Q Consensus 88 mhlv~~ 93 (118)
++++++
T Consensus 69 i~~~~~ 74 (77)
T cd01805 69 VVVMVS 74 (77)
T ss_pred EEEEEe
Confidence 555554
No 18
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.67 E-value=2.2e-16 Score=99.82 Aligned_cols=72 Identities=28% Similarity=0.419 Sum_probs=64.0
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
|+|+|++.+|.++. +++++++||++||++|++. .++| ++.|||+|.|+.|+|+.+|++||+.++ .+
T Consensus 1 i~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~ 66 (72)
T cd01809 1 IEIKVKTLDSQTHT-FTVEEEITVLDLKEKIAEE-----VGIP--VEQQRLIYSGRVLKDDETLSEYKVEDG------HT 66 (72)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCEECCCcCcHHHCCCCCC------CE
Confidence 57899999999998 9999999999999999755 3566 589999999999999999999999987 47
Q ss_pred EEEEeC
Q 033465 88 MHVVVQ 93 (118)
Q Consensus 88 mhlv~~ 93 (118)
+|++++
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 888764
No 19
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.66 E-value=2.2e-16 Score=103.25 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=65.6
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEE--EeCCeecCCCCcccccCCCCCCCCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL--ISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL--I~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
.++|+|++..|+++. ++++++.||++||++|++. .++| +++||| +|.|++|+|+.+|++||+.+|
T Consensus 2 ~~~i~Vk~~~G~~~~-~~v~~~~TV~~lK~~I~~~-----~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~g----- 68 (80)
T cd01792 2 GWDLKVKMLGGNEFL-VSLRDSMTVSELKQQIAQK-----IGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPG----- 68 (80)
T ss_pred ceEEEEEeCCCCEEE-EEcCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCC-----
Confidence 478999999999998 9999999999999999754 3565 599999 999999999999999999987
Q ss_pred eEEEEEEeCCC
Q 033465 85 VTTMHVVVQPP 95 (118)
Q Consensus 85 ~~tmhlv~~~~ 95 (118)
.++|++++..
T Consensus 69 -s~l~l~~~~~ 78 (80)
T cd01792 69 -STVLLVVQNC 78 (80)
T ss_pred -CEEEEEEEcc
Confidence 3778887643
No 20
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.66 E-value=2.6e-16 Score=99.15 Aligned_cols=68 Identities=25% Similarity=0.406 Sum_probs=60.4
Q ss_pred EeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEe
Q 033465 13 RLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVV 92 (118)
Q Consensus 13 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~ 92 (118)
|+.+|+++. +++++++||.+||++|++.+ ++| ++.|||+|+|+.|+|+.+|++|||.++ .++|+++
T Consensus 1 k~~~g~~~~-~~v~~~~tV~~lK~~i~~~~-----~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~------~~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKTFT-LEVDPDDTVADLKQKIAEET-----GIP--PEQQRLIYNGKELDDDKTLSDYGIKDG------STIHLVI 66 (69)
T ss_dssp EETTSEEEE-EEEETTSBHHHHHHHHHHHH-----TST--GGGEEEEETTEEESTTSBTGGGTTSTT------EEEEEEE
T ss_pred CCCCCcEEE-EEECCCCCHHHhhhhccccc-----ccc--cccceeeeeeecccCcCcHHHcCCCCC------CEEEEEE
Confidence 578999998 99999999999999997653 455 599999999999999999999999987 4888888
Q ss_pred CC
Q 033465 93 QP 94 (118)
Q Consensus 93 ~~ 94 (118)
++
T Consensus 67 k~ 68 (69)
T PF00240_consen 67 KP 68 (69)
T ss_dssp SS
T ss_pred ec
Confidence 75
No 21
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-16 Score=100.20 Aligned_cols=70 Identities=29% Similarity=0.414 Sum_probs=63.5
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
+.|++++++|+.++ ++++|+++|..+|++| ++.+++| |.+|||||+||++.|+.|-++|++.-| ++
T Consensus 1 m~iKvktLt~KeIe-idIep~DkverIKErv-----EEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~G------SV 66 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERV-----EEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGG------SV 66 (70)
T ss_pred CeeeEeeeccceEE-EeeCcchHHHHHHHHh-----hhhcCCC--chhhhhhhccccccccccHHHhhhccc------ee
Confidence 36899999999999 9999999999999999 5678998 589999999999999999999999866 57
Q ss_pred EEEE
Q 033465 88 MHVV 91 (118)
Q Consensus 88 mhlv 91 (118)
+|++
T Consensus 67 lHlv 70 (70)
T KOG0005|consen 67 LHLV 70 (70)
T ss_pred EeeC
Confidence 8874
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.64 E-value=5.1e-16 Score=99.58 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=55.7
Q ss_pred EEEEeC-CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCC-CcccccCCCCCC
Q 033465 10 IKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRSPLCD 80 (118)
Q Consensus 10 i~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~-~tL~~~~i~~~~ 80 (118)
|+|++. +|+++. +++++++||++||++|++ .+++| +++|||||+||.|+|+ .+|++|||++++
T Consensus 1 l~v~~~~~g~~~~-l~v~~~~TV~~lK~~I~~-----~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~ 65 (71)
T cd01796 1 ITVYTARSETTFS-LDVDPDLELENFKALCEA-----ESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGD 65 (71)
T ss_pred CEEEECCCCCEEE-EEECCcCCHHHHHHHHHH-----HhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCC
Confidence 578888 899998 999999999999999953 46777 4999999999999887 689999999874
No 23
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.64 E-value=4.1e-16 Score=101.03 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=62.3
Q ss_pred CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeCC
Q 033465 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQP 94 (118)
Q Consensus 15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~~ 94 (118)
++|+++. +++++++||++||++|.. ..++| +++|||+|.|+.|+|+.+|++|++.+++ ++|+++++
T Consensus 5 l~g~~~~-l~v~~~~TV~~lK~~i~~-----~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~------~l~v~~~~ 70 (76)
T cd01800 5 LNGQMLN-FTLQLSDPVSVLKVKIHE-----ETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGT------IIHLQLKE 70 (76)
T ss_pred cCCeEEE-EEECCCCcHHHHHHHHHH-----HHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCC------EEEEEEec
Confidence 4788898 999999999999999964 35677 5999999999999999999999999874 88999998
Q ss_pred CCchh
Q 033465 95 PSTEK 99 (118)
Q Consensus 95 ~~~~~ 99 (118)
+++.+
T Consensus 71 ~gg~~ 75 (76)
T cd01800 71 RGGRK 75 (76)
T ss_pred CCCcC
Confidence 88654
No 24
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.3e-17 Score=113.54 Aligned_cols=77 Identities=26% Similarity=0.369 Sum_probs=70.3
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEE
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTM 88 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tm 88 (118)
.+.+++..|+++. ++++|++||..||.+| ++.+++| +++|||||+||+|+|..||++|||... .|+
T Consensus 2 ~~~~~~~~GKT~~-le~EpS~ti~~vKA~i-----~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~------~Tl 67 (128)
T KOG0003|consen 2 QIFVKTLTGKTIT-LEVEPSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKE------STL 67 (128)
T ss_pred cEEEEEeeCceEE-EEecccchHHHHHHHh-----ccccCCC--HHHHHHHhcccccccCCcccccCccch------hhh
Confidence 5678889999999 9999999999999999 6788987 699999999999999999999999864 599
Q ss_pred EEEeCCCCchh
Q 033465 89 HVVVQPPSTEK 99 (118)
Q Consensus 89 hlv~~~~~~~~ 99 (118)
|+++++.++.-
T Consensus 68 ~~~~rL~GG~i 78 (128)
T KOG0003|consen 68 HLVLRLRGGII 78 (128)
T ss_pred hhhHHHhcCCC
Confidence 99999999844
No 25
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.9e-16 Score=112.82 Aligned_cols=79 Identities=28% Similarity=0.406 Sum_probs=72.0
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
+.|.++++.|+++. +++++++||..+|.+| ++.++|| +++|||||+|+.|+|..+|+||+|+-. .|
T Consensus 1 m~ifVk~l~~kti~-~eve~~~ti~~~Kaki-----q~~egIp--~dqqrlifag~qLedgrtlSDY~Iqke------st 66 (156)
T KOG0004|consen 1 MQIFVKTLTGKTIT-LEVEANDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (156)
T ss_pred Cccchhhcccccee-eeecccccHHHHHHhh-----hcccCCC--chhhhhhhhhcccccCCcccccccccc------ce
Confidence 35788899999998 9999999999999999 6789998 599999999999999999999999964 69
Q ss_pred EEEEeCCCCchhh
Q 033465 88 MHVVVQPPSTEKA 100 (118)
Q Consensus 88 mhlv~~~~~~~~~ 100 (118)
+||++++.++..+
T Consensus 67 l~l~l~l~Gg~kk 79 (156)
T KOG0004|consen 67 LHLVLRLRGGAKK 79 (156)
T ss_pred EEEEEEecCCccc
Confidence 9999999999764
No 26
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.59 E-value=9.9e-15 Score=96.98 Aligned_cols=80 Identities=15% Similarity=0.297 Sum_probs=71.5
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
.+..|.|++++.+|+.+. +++.+++++..||+++.+ ..++| +++|||+|.|+.|+|++|+++|++.+++
T Consensus 8 ~~~~i~I~v~~~~g~~~~-~~v~~~~~l~~l~~~y~~-----~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d--- 76 (87)
T cd01763 8 ISEHINLKVKGQDGNEVF-FKIKRSTPLKKLMEAYCQ-----RQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGD--- 76 (87)
T ss_pred CCCeEEEEEECCCCCEEE-EEEcCCCHHHHHHHHHHH-----HhCCC--ccceEEEECCeECCCCCCHHHcCCCCCC---
Confidence 456799999999999999 999999999999999964 45676 5899999999999999999999999885
Q ss_pred CeEEEEEEeCCCCc
Q 033465 84 GVTTMHVVVQPPST 97 (118)
Q Consensus 84 ~~~tmhlv~~~~~~ 97 (118)
++|++++..++
T Consensus 77 ---~I~v~l~l~GG 87 (87)
T cd01763 77 ---EIEVMLEQTGG 87 (87)
T ss_pred ---EEEEEEecccC
Confidence 88999988764
No 27
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.56 E-value=9.7e-15 Score=92.22 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=59.5
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
|.|+|++. |..++ +++++++||++||++|++ ..++| +++|||+|.|+.|+|+.+|++|++.+|+ +
T Consensus 1 i~i~vk~~-g~~~~-i~v~~~~tv~~lK~~i~~-----~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~------~ 65 (71)
T cd01812 1 IRVRVKHG-GESHD-LSISSQATFGDLKKMLAP-----VTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGS------K 65 (71)
T ss_pred CEEEEEEC-CEEEE-EEECCCCcHHHHHHHHHH-----hhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCC------E
Confidence 57888886 88888 999999999999999954 45676 5999999999999999999999999874 5
Q ss_pred EEEE
Q 033465 88 MHVV 91 (118)
Q Consensus 88 mhlv 91 (118)
+|++
T Consensus 66 l~v~ 69 (71)
T cd01812 66 VMLL 69 (71)
T ss_pred EEEe
Confidence 6654
No 28
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.54 E-value=7.3e-15 Score=96.02 Aligned_cols=58 Identities=28% Similarity=0.448 Sum_probs=47.8
Q ss_pred CCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeC
Q 033465 26 PAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQ 93 (118)
Q Consensus 26 ~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~ 93 (118)
+.++||.+||++|+++++ ++++ ++++|||||+||+|+|+.||++|||+++ .++|++.+
T Consensus 18 ~~~~TV~~LK~kI~~~~~---egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~g------stlhLv~~ 75 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLP---DSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSG------STIHILRK 75 (75)
T ss_pred CccCcHHHHHHHHHHhhc---cCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCC------CEEEEEeC
Confidence 467999999999976531 3443 2689999999999999999999999987 48888763
No 29
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.54 E-value=1.1e-14 Score=121.80 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=66.9
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~ 86 (118)
.++|+||+.++ .++ +.|+.+.||.+|||.|.... +.| +++++|||+||+|+|++||..|||.+| .
T Consensus 15 ~irV~Vkt~~d-k~~-~~V~~~ssV~qlKE~I~~~f-----~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg------~ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYE-VNVASDSSVLQLKELIAQRF-----GAP--PDQLVLIYAGRILKDDDTLKQYGIQDG------H 79 (493)
T ss_pred eeEEEEecCCc-cee-EecccchHHHHHHHHHHHhc-----CCC--hhHeeeeecCccccChhhHHHcCCCCC------c
Confidence 48899999888 666 99999999999999998653 344 699999999999999999999999987 5
Q ss_pred EEEEEeCCCCch
Q 033465 87 TMHVVVQPPSTE 98 (118)
Q Consensus 87 tmhlv~~~~~~~ 98 (118)
|+|||++.....
T Consensus 80 TvHLVik~~~~~ 91 (493)
T KOG0010|consen 80 TVHLVIKSQPRP 91 (493)
T ss_pred EEEEEeccCCCC
Confidence 999999986443
No 30
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=4.8e-14 Score=115.65 Aligned_cols=68 Identities=26% Similarity=0.395 Sum_probs=59.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
|+|+||+.+|+++. ++|++++||.+||++|.... +...+| +++|||||+||+|+|+.+|++|+|++++
T Consensus 1 MkItVKtl~g~~~~-IeV~~~~TV~dLK~kI~~~~--g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~ 68 (378)
T TIGR00601 1 MTLTFKTLQQQKFK-IDMEPDETVKELKEKIEAEQ--GKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKD 68 (378)
T ss_pred CEEEEEeCCCCEEE-EEeCCcChHHHHHHHHHHhh--CCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCC
Confidence 57999999999998 99999999999999997541 111255 5999999999999999999999999875
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.47 E-value=1.5e-13 Score=89.10 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=54.0
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe---CCeecCCCCcccccCCCCCC
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS---AGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~---~Gk~L~D~~tL~~~~i~~~~ 80 (118)
.|.++. .|++++ +++++++||++||++|++. .++| +++||||| .|+.|+|+.+|++|++++|.
T Consensus 2 ~i~vk~-~g~~~~-v~v~~~~Tv~~lK~~i~~~-----tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~ 67 (74)
T cd01813 2 PVIVKW-GGQEYS-VTTLSEDTVLDLKQFIKTL-----TGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNT 67 (74)
T ss_pred EEEEEE-CCEEEE-EEECCCCCHHHHHHHHHHH-----HCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCC
Confidence 455554 788888 9999999999999999654 4576 59999997 99999999999999999874
No 32
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.43 E-value=3.1e-13 Score=82.78 Aligned_cols=63 Identities=29% Similarity=0.428 Sum_probs=54.9
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~ 79 (118)
++|+||+.+ ..+. +++++++||++||++|++. .++| ++.|||+|+|+.|+|+.+|++||+++|
T Consensus 1 ~~i~vk~~~-~~~~-~~v~~~~tv~~lk~~i~~~-----~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~ 63 (64)
T smart00213 1 IELTVKTLD-GTIT-LEVKPSDTVSELKEKIAEL-----TGIP--VEQQRLIYKGKVLEDDRTLADYNIQDG 63 (64)
T ss_pred CEEEEEECC-ceEE-EEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCEECCCCCCHHHcCCcCC
Confidence 468888888 6777 9999999999999999755 3555 589999999999999999999999865
No 33
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.41 E-value=3.3e-13 Score=108.39 Aligned_cols=67 Identities=21% Similarity=0.352 Sum_probs=59.7
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+.|+||++.|.+++ +++.|++||.+||++|... .+.. .| .++|+|||+||+|+|+.++.+|++++++
T Consensus 1 m~lt~KtL~q~~F~-iev~Pe~tV~evK~kIet~--~g~d-yP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~ 67 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFT-IEVKPEDTVVEVKKKIETE--KGPD-YP--AEQQKLIYSGKILKDETTVGEYKVKEKK 67 (340)
T ss_pred CeeEeeeccCceeE-eecCcchhHHHHHHHHHhc--cCCC-Cc--hhhheeeecceeccCCcchhhhccccCc
Confidence 57999999999999 9999999999999999765 2333 56 5999999999999999999999999875
No 34
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.37 E-value=1.7e-12 Score=84.45 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=54.4
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecC-CCCcccccCCC-CCCCCCCeE
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE-NNRTLGECRSP-LCDIPGGVT 86 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~-D~~tL~~~~i~-~~~~p~~~~ 86 (118)
+|.=+...|.++. +++++++||++||++|. +.+++| +++||| |.|+.|. |+++|++||+. +|+
T Consensus 4 ~~~~~~~~~~t~~-l~v~~~~TV~~lK~kI~-----~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~------ 68 (75)
T cd01799 4 SVEDAQSHTVTIW-LTVRPDMTVAQLKDKVF-----LDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGD------ 68 (75)
T ss_pred EEeccccCCCeEE-EEECCCCcHHHHHHHHH-----HHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCC------
Confidence 3333456788888 99999999999999995 446787 589999 9999884 77999999998 443
Q ss_pred EEEEE
Q 033465 87 TMHVV 91 (118)
Q Consensus 87 tmhlv 91 (118)
++||.
T Consensus 69 ~~~l~ 73 (75)
T cd01799 69 SAFLY 73 (75)
T ss_pred EEEEE
Confidence 56654
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.22 E-value=4.4e-11 Score=74.01 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=53.2
Q ss_pred EEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 12 FRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 12 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++..+|..+. +++++++||++||++|+..+ ++| ++.|||+|.|+.|+|+.+|++|++.++.
T Consensus 2 v~~~~~~~~~-~~~~~~~ti~~lK~~i~~~~-----~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~ 62 (69)
T cd01769 2 VKTLTGKTFE-LEVSPDDTVAELKAKIAAKE-----GVP--PEQQRLIYAGKILKDDKTLSDYGIQDGS 62 (69)
T ss_pred eEccCCCEEE-EEECCCChHHHHHHHHHHHH-----CcC--hHHEEEEECCcCCCCcCCHHHCCCCCCC
Confidence 5666899998 99999999999999998664 355 5899999999999999999999999763
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.13 E-value=1.3e-10 Score=73.61 Aligned_cols=72 Identities=29% Similarity=0.381 Sum_probs=59.6
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
|+|+++..+|+.+. +.+.+++++..|++++.++ .++|. .+.+||+|.|+.|++++|++++++.++| +
T Consensus 1 I~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~-----~~i~~-~~~~~l~fdG~~L~~~~T~~~~~ied~d------~ 67 (72)
T PF11976_consen 1 ITIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEK-----KGIPP-EESIRLIFDGKRLDPNDTPEDLGIEDGD------T 67 (72)
T ss_dssp EEEEEEETTSEEEE-EEEETTSCCHHHHHHHHHH-----HTTTT--TTEEEEETTEEE-TTSCHHHHT-STTE------E
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHh-----hCCCc-cceEEEEECCEEcCCCCCHHHCCCCCCC------E
Confidence 67999999999998 9999999999999999754 45552 2899999999999999999999999885 6
Q ss_pred EEEEe
Q 033465 88 MHVVV 92 (118)
Q Consensus 88 mhlv~ 92 (118)
+++++
T Consensus 68 Idv~I 72 (72)
T PF11976_consen 68 IDVII 72 (72)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 77753
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.5e-10 Score=103.65 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=66.7
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
.+|++||+|.++.+ |.++..+||.++|++|+++ ..|+ .+-|||||.||+|.|++++.+|++ +|+ +
T Consensus 3 ~~v~vktld~r~~t-~~ig~q~ti~~~~d~~r~~-----~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk------~ 67 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRT-FIIGAQMTIKEFKDHIRAS-----VNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGK------V 67 (1143)
T ss_pred cceeeeecccceeE-EEechHHHHHHHHHHHHHh-----cccc--cccceeeecceeeccchhhhhccC-CCe------E
Confidence 45899999999999 9999999999999999754 4576 599999999999999999999999 574 8
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+||+-|++++
T Consensus 68 ~hlverppp~ 77 (1143)
T KOG4248|consen 68 IHLVERPPPQ 77 (1143)
T ss_pred EEeeccCCCC
Confidence 9999997665
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.97 E-value=1.5e-09 Score=74.61 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=52.2
Q ss_pred eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeec-CCCCcccccCCCCCCCCCCeEEEEEEeCCCCc
Q 033465 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKIL-ENNRTLGECRSPLCDIPGGVTTMHVVVQPPST 97 (118)
Q Consensus 19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L-~D~~tL~~~~i~~~~~p~~~~tmhlv~~~~~~ 97 (118)
... +++++++||.+||.+|.+.. +.| +.+|||+|.|+.| +|..||++||+..+ ++++|.+..+..
T Consensus 16 ~~~-L~V~~~~TVg~LK~lImQ~f-----~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sg------Svl~LlideP~~ 81 (107)
T cd01795 16 EKA-LLVSANQTLKELKIQIMHAF-----SVA--PFDQNLSIDGKILSDDCATLGTLGVIPE------SVILLKADEPIA 81 (107)
T ss_pred Cce-EEeCccccHHHHHHHHHHHh-----cCC--cccceeeecCceeccCCccHHhcCCCCC------CEEEEEecCCcc
Confidence 344 89999999999999998652 344 6899999999999 57779999999976 467777765444
No 39
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.97 E-value=2e-09 Score=73.45 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=59.0
Q ss_pred EEEEeCC-CceeeeeecC--CcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465 10 IKFRLTD-GSDIGPKSFP--AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (118)
Q Consensus 10 i~~~~~~-g~~~~~~~v~--~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~ 86 (118)
|.||+.+ --++. ++++ .++||..||+.|.+.+|.+. +-..+||||+||+|.|...|+..-...
T Consensus 3 l~IRFs~sipDl~-L~I~~~~~~Tv~~LK~lIR~~~p~~~-----s~~rLRlI~~Gr~L~d~t~l~~~l~~~-------- 68 (97)
T PF10302_consen 3 LTIRFSDSIPDLP-LDIPSPNTTTVAWLKQLIRERLPPEP-----SRRRLRLIYAGRLLNDHTDLSSELKLP-------- 68 (97)
T ss_pred EEEEECCCCCCce-eecCCCCcccHHHHHHHHHhhcCCCC-----ccccEEeeecCcccCccchhhhhhccc--------
Confidence 4555554 33344 7776 89999999999999876432 358999999999999998776443221
Q ss_pred EEEEEeCCCCchhhhhhhc-cCCCCCCeEEee
Q 033465 87 TMHVVVQPPSTEKAEKKAA-SQPKQNKCVCVI 117 (118)
Q Consensus 87 tmhlv~~~~~~~~~~~~~~-~~~~~~~c~C~i 117 (118)
.......+++++. ......+.+|+|
T Consensus 69 ------~~~~~~~~gk~~~~~~~~~~yIhCsI 94 (97)
T PF10302_consen 69 ------TARSSKGKGKAPERQEAPRIYIHCSI 94 (97)
T ss_pred ------cccCccccCcCccCCCCCeEEEEEec
Confidence 1112333444443 345678999987
No 40
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.90 E-value=9.4e-09 Score=67.92 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=53.6
Q ss_pred eEEEEEeC-CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEE-EeCCe-----ec-CCCCcccccCCCCC
Q 033465 8 LEIKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL-ISAGK-----IL-ENNRTLGECRSPLC 79 (118)
Q Consensus 8 i~i~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL-I~~Gk-----~L-~D~~tL~~~~i~~~ 79 (118)
+.|.|... +....+ ..++++.||.+||++++.. .++| ++.||| +|.|+ .| +|.++|++|++.+|
T Consensus 2 v~v~i~~~~~~~~~e-kr~~~~~Tv~~lK~kl~~~-----~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg 73 (84)
T cd01789 2 VTVNITSSADSFSFE-KKYSRGLTIAELKKKLELV-----VGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDG 73 (84)
T ss_pred EEEEEEeCCCceeee-EecCCCCcHHHHHHHHHHH-----HCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCC
Confidence 34444443 333444 6699999999999999543 4665 589999 58999 45 78889999999988
Q ss_pred CCCCCeEEEEEEeC
Q 033465 80 DIPGGVTTMHVVVQ 93 (118)
Q Consensus 80 ~~p~~~~tmhlv~~ 93 (118)
.++|++-.
T Consensus 74 ------~~IhVvD~ 81 (84)
T cd01789 74 ------CRIHVIDV 81 (84)
T ss_pred ------CEEEEEeC
Confidence 37887653
No 41
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.82 E-value=3.6e-08 Score=60.14 Aligned_cols=72 Identities=29% Similarity=0.417 Sum_probs=61.2
Q ss_pred EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033465 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH 89 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmh 89 (118)
+.+++..|++.. +++.+..+|..+|.+|.. ..++| .++|+|.|.|+.|+|..+|.+|+|..+ .++|
T Consensus 2 ~~~~~~~gk~~~-~~~~~~~~i~~~k~~i~~-----~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~------~~~~ 67 (75)
T KOG0001|consen 2 IFVKTLDGKTIT-LEVSPSDTIEVVKAKIRD-----KEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEG------STLH 67 (75)
T ss_pred EEEEecCCCEEE-EEecCCCHHHHHHHHHHh-----hcCCC--CeeEEEEECCEECcCCCcHHHhCCCCC------CEEE
Confidence 456678899998 999999999999999953 35666 589999999999999999999999865 4888
Q ss_pred EEeCCC
Q 033465 90 VVVQPP 95 (118)
Q Consensus 90 lv~~~~ 95 (118)
++.+..
T Consensus 68 l~~~~~ 73 (75)
T KOG0001|consen 68 LVLSLR 73 (75)
T ss_pred EEEecC
Confidence 877664
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.69 E-value=4.2e-08 Score=78.78 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=58.8
Q ss_pred eEEEEEeCCCcee--eeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC---C----eecCCCCcccccCCCC
Q 033465 8 LEIKFRLTDGSDI--GPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA---G----KILENNRTLGECRSPL 78 (118)
Q Consensus 8 i~i~~~~~~g~~~--~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~---G----k~L~D~~tL~~~~i~~ 78 (118)
+.|.++..+|+.+ ..+++++++||++||++|.++ .++. ++++|||++. | +.|+|+++|+++|+.+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~-----~~~~-~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~ 74 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKR-----KKKY-YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGD 74 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHH-----cCCC-ChhheEEEEecCCCCcCccccCCCCCHHhcCCCC
Confidence 3567777778887 238999999999999999754 2221 2589999983 4 4899999999999987
Q ss_pred CCCCCCeEEEEEEeCCCCchh
Q 033465 79 CDIPGGVTTMHVVVQPPSTEK 99 (118)
Q Consensus 79 ~~~p~~~~tmhlv~~~~~~~~ 99 (118)
+ ++ +.++-.|+|-
T Consensus 75 g------st--Ly~kDLGpQi 87 (308)
T PLN02560 75 G------GT--VVFKDLGPQV 87 (308)
T ss_pred C------ce--EEEEeCCCcC
Confidence 6 34 4466667664
No 43
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.65 E-value=7.9e-08 Score=67.38 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=57.8
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC-CCCe
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI-PGGV 85 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~-p~~~ 85 (118)
++.|.||-....-+ ++..+++||.+||++|. +--..| ++.|||+-.+.+|+|++||++||+..... +..+
T Consensus 2 dvFlmIrR~KTTiF--~dakes~tVlelK~~ie-----gI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~p 72 (119)
T cd01788 2 DVFLMIRRHKTTIF--TDAKESTTVYELKRIVE-----GILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAP 72 (119)
T ss_pred ceEEEEEecceEEE--eecCCcccHHHHHHHHH-----HHhcCC--hhHheeecCceeecccccHHHcCccccccccCCC
Confidence 46677776544333 79999999999999994 333344 69999997778999999999999943211 3334
Q ss_pred EEEEEEeCC
Q 033465 86 TTMHVVVQP 94 (118)
Q Consensus 86 ~tmhlv~~~ 94 (118)
.++-|.+|.
T Consensus 73 A~vgLa~r~ 81 (119)
T cd01788 73 ATVGLAFRS 81 (119)
T ss_pred CeEEEEEec
Confidence 677777774
No 44
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.53 E-value=2.8e-07 Score=59.62 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=39.6
Q ss_pred CCcccHHHHHHHhhhhCCCcccCCCCCCCceEE--EeCCeecCCCCcccccCCCCC
Q 033465 26 PAATSVATLKESVLSQWPKEKENGPRTVKDVKL--ISAGKILENNRTLGECRSPLC 79 (118)
Q Consensus 26 ~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL--I~~Gk~L~D~~tL~~~~i~~~ 79 (118)
+++.||.+||+.|.+++ ...+ +++||| ++.|+.|.|+++|+++|+.+|
T Consensus 20 ~~~aTV~dlk~~i~~~~----~~~~--~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g 69 (77)
T cd01801 20 SGDATIADLKKLIAKSS----PQLT--VNRQSLRLEPKGKSLKDDDTLVDLGVGAG 69 (77)
T ss_pred CCCccHHHHHHHHHHHc----CCCC--cceeEEEeCCCCcccCCcccHhhcCCCCC
Confidence 58899999999998653 1222 478777 699999999999999999876
No 45
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.49 E-value=5.5e-07 Score=59.36 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=52.3
Q ss_pred eEEEEEeCCC--ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC----Ce----ecCCCCcccccCCC
Q 033465 8 LEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA----GK----ILENNRTLGECRSP 77 (118)
Q Consensus 8 i~i~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~----Gk----~L~D~~tL~~~~i~ 77 (118)
|.|.|..... ...+ ..++++.||.+||++|... .|+| ++.|||.|. |. ..+|..+|.+||+.
T Consensus 2 v~l~It~~~~~~~~~e-kr~~~~~Tv~eLK~kl~~~-----~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~ 73 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVE-KRFPKSITVSELKQKLEKL-----TGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK 73 (87)
T ss_dssp EEEEEEESSSSSSEEE-EEEETTSBHHHHHHHHHHH-----HTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S
T ss_pred EEEEEEeCCCCCeeEE-EEcCCCCCHHHHHHHHHHH-----hCCC--cccEEEEEEecCCCccccccCCCccEeecCCCC
Confidence 5666666544 4777 9999999999999999644 4676 599999776 22 33688899999999
Q ss_pred CCCCCCCeEEEEEEe
Q 033465 78 LCDIPGGVTTMHVVV 92 (118)
Q Consensus 78 ~~~~p~~~~tmhlv~ 92 (118)
+| .++|+.-
T Consensus 74 dg------~~i~V~D 82 (87)
T PF14560_consen 74 DG------MRIHVVD 82 (87)
T ss_dssp TT------EEEEEEE
T ss_pred CC------CEEEEEe
Confidence 87 4777653
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.22 E-value=1e-05 Score=46.28 Aligned_cols=60 Identities=32% Similarity=0.436 Sum_probs=50.1
Q ss_pred EeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 13 RLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 13 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+..+|.... +.++++.|+.+||++|.++++ .+ ++.++|.+.|+.+++...+.++++..++
T Consensus 3 ~~~~~~~~~-~~~~~~~tv~~l~~~i~~~~~-----~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (69)
T cd00196 3 KLNDGKTVE-LLVPSGTTVADLKEKLAKKLG-----LP--PEQQRLLVNGKILPDSLTLEDYGLQDGD 62 (69)
T ss_pred EecCCCEEE-EEcCCCCcHHHHHHHHHHHHC-----cC--hHHeEEEECCeECCCCCcHHHcCCCCCC
Confidence 334677787 899999999999999987742 33 5899999999999999988889998764
No 47
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.9e-05 Score=64.28 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=50.2
Q ss_pred eEEEEEe-CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465 8 LEIKFRL-TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (118)
Q Consensus 8 i~i~~~~-~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~ 79 (118)
+.|.|+- .....++ ++|+.+++|.+||+.++.+ .++| ++++|+||+||.|.|+.++..+.+...
T Consensus 3 ~lvqf~~~~~~h~l~-v~v~~~t~I~~lke~Vak~-----~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qq 67 (446)
T KOG0006|consen 3 VLVQFNKTGSSHGLP-VEVDSDTSIFQLKEVVAKR-----QGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQ 67 (446)
T ss_pred EEEEeCCccccCcee-EEEecCCCHHHHHHHHHHh-----hCCC--hhheEEEEeccccccCceeeccccccc
Confidence 3444542 2344565 8999999999999999754 4676 599999999999999999998888753
No 48
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.91 E-value=0.00014 Score=46.90 Aligned_cols=71 Identities=30% Similarity=0.410 Sum_probs=54.0
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecCCC--CcccccCCC
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILENN--RTLGECRSP 77 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~D~--~tL~~~~i~ 77 (118)
+..++.+.|.||+.+|.++. ..|.+++||.+|.+.|.... . .+. ....+|+ |--|.|.+. .||+++|+.
T Consensus 1 ~~~~~~~~I~vRlpdG~~l~-~~F~~~~tl~~l~~~v~~~~----~-~~~-~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~ 73 (82)
T PF00789_consen 1 SEESDVVRIQVRLPDGSRLQ-RRFPKSDTLQDLYDFVESQL----F-SPE-ESDFELITAFPRRELTDEDSKTLEEAGLL 73 (82)
T ss_dssp -STSSEEEEEEEETTSTEEE-EEEETTSBHHHHHHHHHHHH----H-CTT-TSSEEEEESSSTEECCSTTTSBTCCCTTS
T ss_pred CCCCCEEEEEEECCCCCEEE-EEECCcchHHHHHHHHHHhc----C-CCC-CccEEEEeCCCCcCCCccccccHHHhcCC
Confidence 35678899999999999998 99999999999999997652 1 111 1237776 566777544 599999887
Q ss_pred CC
Q 033465 78 LC 79 (118)
Q Consensus 78 ~~ 79 (118)
.+
T Consensus 74 p~ 75 (82)
T PF00789_consen 74 PS 75 (82)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 49
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.90 E-value=3.2e-05 Score=50.87 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=38.0
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe----ec--CCCCcccccCCCCC
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK----IL--ENNRTLGECRSPLC 79 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk----~L--~D~~tL~~~~i~~~ 79 (118)
+.+-|+||..+|... +++++++|+.+|+++|.+..+ +| .+.+.| |..+ .| .+..+|+++||+.|
T Consensus 3 ~~milRvrS~dG~~R--ie~~~~~t~~~L~~kI~~~l~-----~~--~~~~~L-~~~~~~~~~l~s~~~~tl~~lglkHG 72 (80)
T PF11543_consen 3 SSMILRVRSKDGMKR--IEVSPSSTLSDLKEKISEQLS-----IP--DSSQSL-SKDRNNKEELKSSDSKTLSSLGLKHG 72 (80)
T ss_dssp ---EEEEE-SSEEEE--EEE-TTSBHHHHHHHHHHHS----------TTT----BSSGGGGGCSSS-TT-CCCCT---TT
T ss_pred ccEEEEEECCCCCEE--EEcCCcccHHHHHHHHHHHcC-----CC--CcceEE-EecCCCCcccccCCcCCHHHcCCCCc
Confidence 468899999999665 799999999999999987642 33 245554 2222 34 57889999999999
Q ss_pred C
Q 033465 80 D 80 (118)
Q Consensus 80 ~ 80 (118)
|
T Consensus 73 d 73 (80)
T PF11543_consen 73 D 73 (80)
T ss_dssp -
T ss_pred c
Confidence 6
No 50
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.84 E-value=5.6e-05 Score=49.52 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=51.7
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC---Ce--ecCCCCcccccCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA---GK--ILENNRTLGECRSP 77 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~---Gk--~L~D~~tL~~~~i~ 77 (118)
|+++++-..+.... +.++|..+|..+|++|+..| +. ..+|||-|. |+ .|.+..+|++|||=
T Consensus 1 iqVtV~q~g~~dl~-l~vnPy~pI~k~K~kI~~~~-----~~---~g~qrLsfQepgg~rqlL~s~~sLA~yGiF 66 (80)
T cd01811 1 IQVTVEQTGYSDWI-LRVNPYSPIRKIKEKIRRSR-----NC---SGLQRLSFQEPGGERQLLSSRKSLADYGIF 66 (80)
T ss_pred CEEEeeecCCCceE-EEeCCcchHHHHHHHHHHhh-----Cc---ccceEEEeecCCcccccccccccHhhhcce
Confidence 57788888888998 99999999999999998776 34 369999985 33 67899999999995
No 51
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.74 E-value=0.00036 Score=45.59 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=52.9
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeec-CCCCcccccCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL-ENNRTLGECRSPL 78 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L-~D~~tL~~~~i~~ 78 (118)
+....|.||+.+|+++. ..|..++||++|.+.|..+.|... .....|. |=.|.| +++.||.++|+..
T Consensus 2 ~p~t~iqiRlpdG~r~~-~rF~~~~tv~~l~~~v~~~~~~~~------~~~f~L~t~fP~k~l~~~~~Tl~eagL~~ 71 (79)
T cd01770 2 EPTTSIQIRLADGKRLV-QKFNSSHRVSDVRDFIVNARPEFA------ARPFTLMTAFPVKELSDESLTLKEANLLN 71 (79)
T ss_pred CCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHhCCCCC------CCCEEEecCCCCcccCCCCCcHHHCCCcC
Confidence 45789999999999998 999999999999999987643211 2455665 667877 4577999999984
No 52
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.52 E-value=0.00021 Score=48.99 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=52.3
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eecCCCCcccccCCCCCCC-CC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILENNRTLGECRSPLCDI-PG 83 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L~D~~tL~~~~i~~~~~-p~ 83 (118)
++.+.+|-.... +- +..+++.||-+||.+++.- -..| ++.|||.-.. ..|+|.+||+++|+..... |.
T Consensus 2 ~~f~~VrR~ktt-if-~da~es~tV~elK~~l~gi-----~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q 72 (110)
T KOG4495|consen 2 DVFLRVRRHKTT-IF-TDAKESSTVFELKRKLEGI-----LKRP--VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQ 72 (110)
T ss_pred ceeeeeeeccee-EE-eecCccccHHHHHHHHHHH-----HhCC--CcchheeecCHHHHhhccchhhhccccccccccC
Confidence 456677664443 33 7889999999999999532 2344 6999998855 4889999999999864322 44
Q ss_pred CeEEEEE
Q 033465 84 GVTTMHV 90 (118)
Q Consensus 84 ~~~tmhl 90 (118)
.+.++-|
T Consensus 73 ~pA~vgL 79 (110)
T KOG4495|consen 73 APATVGL 79 (110)
T ss_pred CCceeee
Confidence 4444443
No 53
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0014 Score=44.97 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=60.9
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
.-|+|+|+--+|.++. |.+--++...-|.+...++ .+.+ .+++|++|.|+.+.+.+|-+++++.++|
T Consensus 19 ~hi~LKV~gqd~~~~~-Fkikr~t~LkKLM~aYc~r-----~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D----- 85 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVV-FKIKRHTPLKKLMKAYCER-----QGLS--MNSLRFLFDGQRIRETHTPADLEMEDGD----- 85 (99)
T ss_pred ceEEEEEecCCCCEEE-EEeecCChHHHHHHHHHHH-----cCCc--cceEEEEECCcCcCCCCChhhhCCcCCc-----
Confidence 5578888776677766 9999999999999988644 4554 5999999999999999999999999987
Q ss_pred EEEEEEeCCC
Q 033465 86 TTMHVVVQPP 95 (118)
Q Consensus 86 ~tmhlv~~~~ 95 (118)
.|-++..-.
T Consensus 86 -~Iev~~~q~ 94 (99)
T KOG1769|consen 86 -EIEVVQEQT 94 (99)
T ss_pred -EEEEEeecc
Confidence 455554433
No 54
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.42 E-value=0.00046 Score=44.69 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=48.3
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE-eCCeecCCCCcccccCCCCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI-SAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI-~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
.++|+|...+|..+. +.++.+.+|++|...|.+..-......+ .....+|. -.|+.|+++.+|+++|+.+|+
T Consensus 2 ~~rVtv~~~~~~~~D-l~lP~~vpv~~li~~l~~~~~~~~~~~~-~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVD-LALPADVPVAELIPELVELLGLPGDDPP-GHGQWVLARAGGRPLDPDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEEE-TT--EEE-EEEETTSBTTHHHHHHHHHS---S---T-T-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred EEEEEEEcCCCcEEE-EEcCCCCcHHHHHHHHHHHhCCccCCCC-CcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence 367788776678999 9999999999999999875421111111 11257887 789999999999999999996
No 55
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.35 E-value=0.0023 Score=42.37 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=53.7
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eecC--------CCCccccc
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILE--------NNRTLGEC 74 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L~--------D~~tL~~~ 74 (118)
.+.++|.||+.+|.++. -.|..++||++|...|... .. .+...+|+++= |.+. .+.||.++
T Consensus 2 ~~~~~I~iRlp~G~Rl~-rrF~~~~tl~~l~~fv~~~-----~~---~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ea 72 (85)
T cd01774 2 PDTVKIVFKLPNGTRVE-RRFLFTQSLRVIHDFLFSL-----KE---TPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEA 72 (85)
T ss_pred CceEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhC-----CC---CCCcEEEecCCCCccccccccccCcCCCCHHHc
Confidence 46799999999999998 9999999999999999532 11 24678888877 7885 36799999
Q ss_pred CCCCC
Q 033465 75 RSPLC 79 (118)
Q Consensus 75 ~i~~~ 79 (118)
||...
T Consensus 73 GL~~s 77 (85)
T cd01774 73 GLSNS 77 (85)
T ss_pred CCCCc
Confidence 99843
No 56
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.08 E-value=0.0057 Score=39.15 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=49.5
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecC---CCCcccccCCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE---NNRTLGECRSPL 78 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~---D~~tL~~~~i~~ 78 (118)
+..|.||+.+|+++. ..|..++||.+|.+.|...... ....+|+ |-.|.|. ++.||.++|+..
T Consensus 2 ~t~i~iRlpdG~~~~-~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~ 69 (77)
T cd01767 2 TTKIQIRLPDGKRLE-QRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN 69 (77)
T ss_pred cEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCcc
Confidence 578999999999998 9999999999999999765321 2455665 4456674 477999999983
No 57
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.99 E-value=0.0062 Score=45.15 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=57.1
Q ss_pred eEEEEEeCCC----ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC-Ceec--CCCCcccccCCCCCC
Q 033465 8 LEIKFRLTDG----SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA-GKIL--ENNRTLGECRSPLCD 80 (118)
Q Consensus 8 i~i~~~~~~g----~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~-Gk~L--~D~~tL~~~~i~~~~ 80 (118)
|+|.|.+.+| .++. +.+++++||.+|+.+|.+. .+.|. ..++-|.+. |+.| .++..++++--...+
T Consensus 1 i~Vlvss~~g~~lp~tl~-~~lp~~ttv~dL~~~l~~~-----~~~~~-~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLS-LSLPSTTTVSDLKDRLSER-----LPIPS-SSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEE-eeCCCCCcHHHHHHHHHhh-----cCCCc-cceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 5788999999 5787 9999999999999999654 33442 222345442 3444 455566655443221
Q ss_pred CCCCeEEEEEEeCCCCchhh
Q 033465 81 IPGGVTTMHVVVQPPSTEKA 100 (118)
Q Consensus 81 ~p~~~~tmhlv~~~~~~~~~ 100 (118)
...++++|.++..|+...
T Consensus 74 --~~~~~l~l~~rl~GGKGG 91 (162)
T PF13019_consen 74 --SDFITLRLSLRLRGGKGG 91 (162)
T ss_pred --CCceEEEEEEeccCCCcc
Confidence 134789999999999774
No 58
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.96 E-value=0.0067 Score=39.12 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=49.2
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecCC---CCcccccCCCC
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILEN---NRTLGECRSPL 78 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~D---~~tL~~~~i~~ 78 (118)
+..+|.||+.+|.++. ..|.+++||.+|.+.|.... +.. ....+|+ |-.|.|.+ +.||.++|+..
T Consensus 3 ~~~~I~iRlPdG~ri~-~~F~~~~tl~~v~~~v~~~~-----~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p 72 (80)
T smart00166 3 DQCRLQIRLPDGSRLV-RRFPSSDTLRTVYEFVSAAL-----TDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLP 72 (80)
T ss_pred CeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHcc-----cCC--CCCEEEEeCCCCcCCccccccCCHHHCCCCC
Confidence 5789999999999998 99999999999999995432 111 2345554 55667754 46999999863
No 59
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.95 E-value=0.0087 Score=38.81 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=49.5
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecCC---CCcccccCCCC
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILEN---NRTLGECRSPL 78 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~D---~~tL~~~~i~~ 78 (118)
.+.+|.||+.+|.++. ..|+.++|+++|.+.|...+.. ....+|+ |=-|.+.+ +.||.++|+..
T Consensus 3 ~~~~i~iRlp~G~~~~-~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~P 71 (79)
T cd01772 3 TETRIQIRLLDGTTLK-QTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVP 71 (79)
T ss_pred cEEEEEEECCCCCEEE-EEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCC
Confidence 4678999999999998 8999999999999999765421 1334554 44567753 57999999984
No 60
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00034 Score=57.25 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=56.3
Q ss_pred ceeEEEEEeCC--CceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 6 DQLEIKFRLTD--GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 6 ~~i~i~~~~~~--g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
-.+.+.++..+ -+..+ +..+-..||++||.++..=.|. .|. +..|||||+||.|.|...|++.=++..+
T Consensus 8 ~~v~lliks~Nq~y~dl~-i~~dl~wtv~~Lk~hls~VyPs----kpl-~~dqrliYsgkllld~qcl~d~lrkq~k--- 78 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLS-ISLDLKWTVGDLKVHLSQVYPS----KPL-ELDQRLIYSGKLLLDHQCLTDWLRKQVK--- 78 (391)
T ss_pred cceEEEecCCCcccccee-eehhhhhhHHHHhhhHhhcCCC----CCc-hhhHHHHhhccccccchhHHHHHHHHHH---
Confidence 34555565554 44455 6667899999999999766553 444 5799999999999999999987544322
Q ss_pred CeEEEEEEeCCCCc
Q 033465 84 GVTTMHVVVQPPST 97 (118)
Q Consensus 84 ~~~tmhlv~~~~~~ 97 (118)
-.+.|+|...+..
T Consensus 79 -~Hv~hlvcnsk~v 91 (391)
T KOG4583|consen 79 -EHVKHLVCNSKEV 91 (391)
T ss_pred -HHHHHHhcCCCCC
Confidence 1345666554433
No 61
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.29 E-value=0.035 Score=36.47 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=55.5
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
|.+-|+.-+|.++. +.++.-.+|..|-..+|+... .+-.+.+-.++|..-.+++|.++..|.+|+|.+||
T Consensus 7 VTvD~t~y~g~~yD-Lrl~d~~pikklIdivwe~~k--is~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD 76 (81)
T COG5417 7 VTVDFTNYNGGTYD-LRLPDYLPIKKLIDIVWESLK--ISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD 76 (81)
T ss_pred EEEEeEecCCceEE-EeccccchHHHHHHHHHHHhh--ccccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence 45556666799999 999999999999888876521 22223333799999999999999999999999997
No 62
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.0075 Score=46.61 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=52.9
Q ss_pred eeEEEEEeC-CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465 7 QLEIKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (118)
Q Consensus 7 ~i~i~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~ 79 (118)
+..++.++. +++.+. +.+...+||.++|.++.++ ++.. +-.||+.|+|++|-|..-|++|+|..+
T Consensus 145 e~~lk~rlTtT~~d~~-lta~~~Dtv~eik~~L~Aa-----eg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg 210 (231)
T KOG0013|consen 145 EPILKLRLTTTREDFW-LTAPHYDTVGEIKRALRAA-----EGVD--PLSQRIFFSGGVLVDKTDLEECKIEKG 210 (231)
T ss_pred CcchHHHhhhhhhhee-ecccCcCcHHHHHHHHHHh-----hccc--hhhheeeccCCceeccccceeeeecCC
Confidence 345555555 677887 8888999999999999755 3332 479999999999999999999999976
No 63
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.012 Score=49.98 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=47.7
Q ss_pred CCceeeeee-cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465 16 DGSDIGPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (118)
Q Consensus 16 ~g~~~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~ 79 (118)
.|+.+. ++ ++.++|+..+|.++.. ..+.| |++||+.+.|+.|.|+--+...+|++|
T Consensus 11 ~gk~y~-v~~l~~d~t~~vlKaqlf~-----LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn 67 (473)
T KOG1872|consen 11 GGKKYP-VETLSTDETPSVLKAQLFA-----LTGVP--PERQKVMVKGGLAKDDVDWGALQIKPN 67 (473)
T ss_pred cCcccc-ceeccCCCchHHHHHHHHH-----hcCCC--ccceeEEEecccccccccccccccCCC
Confidence 566776 66 9999999999999963 35555 699999999999999988999999976
No 64
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.43 E-value=0.23 Score=32.43 Aligned_cols=67 Identities=22% Similarity=0.209 Sum_probs=51.0
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecC---CCCcccccCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE---NNRTLGECRSPL 78 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~---D~~tL~~~~i~~ 78 (118)
++..++|.||+.+|.++. -.|..++++++|-..|..+ +.+ ....+|+ |==|.+. .+.||.++|+..
T Consensus 1 ~~~~~~i~iRlP~G~r~~-rrF~~t~~L~~l~~fv~~~------~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p 71 (80)
T cd01771 1 GEPISKLRVRTPSGDFLE-RRFLGDTPLQVLLNFVASK------GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP 71 (80)
T ss_pred CCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc------CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence 467899999999999998 9999999999999999643 222 2466664 4445563 356999999975
Q ss_pred C
Q 033465 79 C 79 (118)
Q Consensus 79 ~ 79 (118)
.
T Consensus 72 ~ 72 (80)
T cd01771 72 Q 72 (80)
T ss_pred C
Confidence 3
No 65
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.13 E-value=0.14 Score=33.92 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=49.5
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeec---CCCCcccccCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL---ENNRTLGECRSPL 78 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L---~D~~tL~~~~i~~ 78 (118)
+.+.-+|.||+.+|.+++ -.|..+.++++|-..|... +.+ ++..+|+ |==|.+ +.+.||.++|+..
T Consensus 2 ~~~~t~i~vRlP~G~r~~-rrF~~~~~L~~v~~fv~~~------g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P 72 (82)
T cd01773 2 NGPKARLMLRYPDGKREQ-IALPEQAKLLALVRHVQSK------GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCP 72 (82)
T ss_pred CCCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc------CCC--CCCEEEecCCCCcccCCcccCCCHHHcCCCC
Confidence 345678999999999999 9999999999999999652 122 3556665 333444 3457999999985
Q ss_pred C
Q 033465 79 C 79 (118)
Q Consensus 79 ~ 79 (118)
.
T Consensus 73 ~ 73 (82)
T cd01773 73 Q 73 (82)
T ss_pred C
Confidence 4
No 66
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.07 E-value=0.065 Score=34.71 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=45.6
Q ss_pred cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc-CCCCCCCCCCeEEEEEEeCCCC
Q 033465 25 FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC-RSPLCDIPGGVTTMHVVVQPPS 96 (118)
Q Consensus 25 v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~-~i~~~~~p~~~~tmhlv~~~~~ 96 (118)
|.++++|.+|++.|... .+... -....|.|.|+.|+|...|++. |++++ .++.++..+=.
T Consensus 1 v~~~d~v~dvrq~L~~~----~~t~~--~Tn~~L~~~g~~L~~~~el~~i~~~~~~------~~L~lve~pYt 61 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES----PETCY--LTNFSLEHNGQRLDDFVELSEIEGIKDG------CVLELVEEPYT 61 (76)
T ss_pred CChhhHHHHHHHHHHhC----ccccc--eeEEEEEECCCccCCchhhhhhhCCCCC------cEEEEEecCCC
Confidence 46889999999999643 12222 4789999999999999999888 57754 57888866643
No 67
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.0069 Score=38.82 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=47.8
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~ 79 (118)
++.++-.-|+.+. +.-.+++||+++|..|+.+- ... ++.+.|=--+-+++|.-+|++|.|.+|
T Consensus 3 ev~~nDrLGKKVR-vKCn~dDtiGD~KKliaaQt----GT~---~~kivl~k~~~i~kd~I~L~dyeihdg 65 (73)
T KOG3493|consen 3 EVVLNDRLGKKVR-VKCNTDDTIGDLKKLIAAQT----GTR---PEKIVLKKWYTIFKDHITLSDYEIHDG 65 (73)
T ss_pred eehhhhhcCceEE-EEeCCcccccCHHHHHHHhh----CCC---hhHhHHHhhhhhhhcccceeeEEeccC
Confidence 3444455688888 88899999999999998651 222 356666555668899999999999876
No 68
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.13 Score=34.98 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=53.0
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
-|.|++---+|.++- +.+--+++...|-+....+ .+. +.+.+|++|.|+.++-++|..++++.++|
T Consensus 24 hinLkvv~qd~telf-FkiKktT~f~klm~af~~r-----qGK--~m~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 24 HINLKVVDQDGTELF-FKIKKTTTFKKLMDAFSRR-----QGK--NMSSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred ccceEEecCCCCEEE-EEEeccchHHHHHHHHHHH-----hCc--CcceeEEEEcceecCCCCChhhcCCccch
Confidence 366666666788887 9999999998888777654 233 25899999999999999999999998765
No 69
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=92.92 E-value=0.26 Score=41.04 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe--CCeec-CCCCcccccCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGKIL-ENNRTLGECRSPL 78 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~--~Gk~L-~D~~tL~~~~i~~ 78 (118)
.+.+-+|.||+.+|.+.- ..|+-+-||.+|+..|...=|. .+ ...+-|++ =-|.| +|+.||+++|+.+
T Consensus 302 ~~PtTsIQIRLanG~RlV-~~fN~sHTv~DIR~fI~~aRp~----~~--~~~F~L~~~FPpk~l~D~sqTle~AgL~N 372 (380)
T KOG2086|consen 302 AEPTTSIQIRLANGTRLV-LKFNHSHTVSDIREFIDTARPG----DS--STYFILMMAFPPKPLSDDSQTLEEAGLLN 372 (380)
T ss_pred CCCcceEEEEecCCceee-eeccCcccHHHHHHHHHhcCCC----Cc--CCceeeeecCCCcccCCcchhHHhccchh
Confidence 356678999999999997 9999999999999999865332 21 23444443 34566 6777999999984
No 70
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=91.94 E-value=1.7 Score=27.24 Aligned_cols=71 Identities=20% Similarity=0.107 Sum_probs=51.3
Q ss_pred EEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe----CC--eecCCCCcccccCCCCCCCCCCe
Q 033465 12 FRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS----AG--KILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 12 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~----~G--k~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
|++.+|...+ +++++++|+.+|=+.|.++. ++. +.+..=|.| .| ..|+.+++|.+.....+ .+
T Consensus 1 V~llD~~~~~-~~v~~~~t~~~l~~~v~~~l-----~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~----~~ 69 (80)
T PF09379_consen 1 VRLLDGTTKT-FEVDPKTTGQDLLEQVCDKL-----GLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNN----PP 69 (80)
T ss_dssp EEESSEEEEE-EEEETTSBHHHHHHHHHHHH-----TTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSS----SS
T ss_pred CCCcCCCcEE-EEEcCCCcHHHHHHHHHHHc-----CCC-CccEEEEEEeecCCCcceeccCcccHHHHcCCCC----CC
Confidence 5678999998 99999999999999997652 343 256777777 33 48898999988866522 13
Q ss_pred EEEEEEeC
Q 033465 86 TTMHVVVQ 93 (118)
Q Consensus 86 ~tmhlv~~ 93 (118)
.++++-++
T Consensus 70 ~~l~frvk 77 (80)
T PF09379_consen 70 FTLYFRVK 77 (80)
T ss_dssp EEEEEEES
T ss_pred EEEEEEEE
Confidence 56776654
No 71
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=90.55 E-value=1.6 Score=27.20 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=37.2
Q ss_pred eeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 20 IGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 20 ~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
.+ +++++..||.+|.+.+..++|.. .... ....++..+|+...+ +..+.+||
T Consensus 18 ~~-~~~~~~~tv~~ll~~l~~~~~~~-~~~~--~~~~~v~vNg~~v~~-----~~~l~~gD 69 (80)
T cd00754 18 EE-LELPEGATVGELLDALEARYPGL-LEEL--LARVRIAVNGEYVRL-----DTPLKDGD 69 (80)
T ss_pred EE-EECCCCCcHHHHHHHHHHHCchH-HHhh--hhcEEEEECCeEcCC-----CcccCCCC
Confidence 44 78888999999999998887642 1111 257788889998873 34577776
No 72
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=90.52 E-value=1.6 Score=26.98 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=41.6
Q ss_pred eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
... +.++...||.+|.+.+..++|... . ....++..+|++..+ . -.+..++++|
T Consensus 13 ~~~-~~~~~~~tv~~ll~~l~~~~p~~~---~--~~~~~v~vN~~~v~~-~-~~~~~l~~gD 66 (77)
T PF02597_consen 13 EEE-IEVPEGSTVRDLLEALAERYPELA---L--RDRVAVAVNGEIVPD-D-GLDTPLKDGD 66 (77)
T ss_dssp EEE-EEESSTSBHHHHHHHHCHHTGGGH---T--TTTEEEEETTEEEGG-G-TTTSBEETTE
T ss_pred CeE-EecCCCCcHHHHHHHHHhhccccc---c--CccEEEEECCEEcCC-c-cCCcCcCCCC
Confidence 344 788999999999999998877544 1 378999999999988 2 4445567765
No 73
>PRK06437 hypothetical protein; Provisional
Probab=89.93 E-value=2.7 Score=26.27 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=35.9
Q ss_pred CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 16 ~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
.+++.+ +++++..||++|=+.+ +++ +..+-++.+|+++. .+.-+++||
T Consensus 9 g~~~~~-~~i~~~~tv~dLL~~L---------gi~--~~~vaV~vNg~iv~-----~~~~L~dgD 56 (67)
T PRK06437 9 GHINKT-IEIDHELTVNDIIKDL---------GLD--EEEYVVIVNGSPVL-----EDHNVKKED 56 (67)
T ss_pred CCcceE-EEcCCCCcHHHHHHHc---------CCC--CccEEEEECCEECC-----CceEcCCCC
Confidence 445565 8889999999998777 243 47888999999997 344567776
No 74
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=89.24 E-value=1.1 Score=28.54 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=34.8
Q ss_pred CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 16 ~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
.|.....++++...||++|++.+..+.|.-.... ....+..+|+...++ .-+.+||
T Consensus 16 ~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~----~~~~vavN~~~v~~~-----~~l~dgD 71 (82)
T PLN02799 16 TGVSDMTLELPAGSTTADCLAELVAKFPSLEEVR----SCCVLALNEEYTTES-----AALKDGD 71 (82)
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHh----hCcEEEECCEEcCCC-----cCcCCCC
Confidence 3533333788899999999999976644211111 234577788886544 3456675
No 75
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=89.06 E-value=3.7 Score=26.00 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=38.4
Q ss_pred CCceeeeeecCCc-ccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 16 DGSDIGPKSFPAA-TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 16 ~g~~~~~~~v~~~-~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
.|.....+++++. .||.+|++.+.+..|.... ....+++..+|+...++ ..+++||
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~----~~~~~~v~vn~~~v~~~-----~~l~dgD 69 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPELAA----SRGQVMVAVNEEYVTDD-----ALLNEGD 69 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCchhhh----hccceEEEECCEEcCCC-----cCcCCCC
Confidence 3554323788876 8999999999887662111 12467888899988753 4667775
No 76
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=88.72 E-value=2 Score=33.37 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=42.2
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEE-EeCC-----eec-CCCCcccccCCCCCCCCCCeEEEEEEeC
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL-ISAG-----KIL-ENNRTLGECRSPLCDIPGGVTTMHVVVQ 93 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL-I~~G-----k~L-~D~~tL~~~~i~~~~~p~~~~tmhlv~~ 93 (118)
..++++.||+++|.+++- ..+.+ ++.++| +|.| -.| +++..|..|+..+| ..+|++-.
T Consensus 17 kr~~~~ltl~q~K~KLe~-----~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg------~rihviD~ 81 (234)
T KOG3206|consen 17 KRLSNSLTLAQFKDKLEL-----LTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDG------LRIHVIDS 81 (234)
T ss_pred hhcCCcCcHHHHHhhhhh-----hhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCc------eEEEEEec
Confidence 677899999999999952 34444 588888 7777 245 46668888888877 46776543
No 77
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=86.84 E-value=6.2 Score=25.27 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=39.1
Q ss_pred CCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCC-CC---CCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 16 DGS-DIGPKSFPAATSVATLKESVLSQWPKEKENG-PR---TVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 16 ~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~-p~---~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
.|. ..+ ++++ ..||.+|.+.+.+++|.....+ .. --..+++..+|+..++... ..+++||
T Consensus 13 ~g~~~~~-v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd 77 (88)
T TIGR01687 13 TGKKSEE-IEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD 77 (88)
T ss_pred hCCceEE-EEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC
Confidence 354 344 7776 8999999999999887533211 00 0135888889998865432 4577776
No 78
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=85.76 E-value=2.2 Score=34.15 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=44.8
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCC-CCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeCCCCchh
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGP-RTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEK 99 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p-~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~~~~~~~ 99 (118)
.......|++++++.+.++ +....| .....+|+--.|+.|-|+.+|++++...+. + +.++-.|||-
T Consensus 17 ~~~s~~~ti~d~~~~~~~~---~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~------~--i~vKDLGpQI 83 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAK---NLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGA------T--IYVKDLGPQI 83 (297)
T ss_pred ecCCCCCcHHHHHHHHHHh---hhccCccchhheeeccCCCccccchhHHHHhccCCCC------E--EEEeccCCcc
Confidence 4556788999999888754 111111 112445556689999999999999998653 3 4577777765
No 79
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=85.29 E-value=5 Score=25.26 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=37.8
Q ss_pred eCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465 14 LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (118)
Q Consensus 14 ~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~ 79 (118)
..+++++. +.+.|++++.+|-+..-++. +.. +++-.|.|++|.|+-+.++.-.|++.|
T Consensus 3 ~~~~rr~~-vkvtp~~~l~~VL~eac~k~-----~l~--~~~~~L~h~~k~ldlslp~R~snL~n~ 60 (65)
T PF11470_consen 3 CYNFRRFK-VKVTPNTTLNQVLEEACKKF-----GLD--PSSYDLKHNNKPLDLSLPFRLSNLPNN 60 (65)
T ss_dssp -TTS-EEE-E---TTSBHHHHHHHHHHHT-----T----GGG-EEEETTEEESSS-BHHHH---SS
T ss_pred ccCCcEEE-EEECCCCCHHHHHHHHHHHc-----CCC--ccceEEEECCEEeccccceeecCCCCC
Confidence 45788888 99999999999877776542 333 468899999999999999988899876
No 80
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=83.99 E-value=4.2 Score=25.51 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=37.3
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG 62 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G 62 (118)
++.+|+...++.... +.++.+.|..+|+.+|.+.++.. ...++|-|..
T Consensus 1 t~~vK~~~~~~~~~~-~~~~~~~s~~~L~~~i~~~~~~~-------~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRI-ISLPSDVSFDDLRSKIREKFGLL-------DEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEE-EEECSTSHHHHHHHHHHHHHTTS-------TSSEEEEEEE
T ss_pred CEEEEEEECCeeEEE-EEcCCCCCHHHHHHHHHHHhCCC-------CccEEEEeeC
Confidence 467888887776765 78999999999999998876422 3688888753
No 81
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=82.46 E-value=3.3 Score=29.86 Aligned_cols=64 Identities=19% Similarity=0.138 Sum_probs=45.7
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC------eecCCCCcccccCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG------KILENNRTLGECRSP 77 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G------k~L~D~~tL~~~~i~ 77 (118)
.+.++|.+.+|.... +.+++++||.+|-+.|..+ -+++. ....-|.+.. +.|+...+|.+....
T Consensus 3 ~~~~~V~l~dg~~~~-~~~~~~~t~~ev~~~v~~~-----~~l~~-~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTLE-FEVDSSTTAEELLETVCRK-----LGIRE-SEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCCc-cceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 577889999999998 9999999999999999765 23432 4555554421 456666666655543
No 82
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=82.29 E-value=6.3 Score=24.68 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=33.5
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~ 61 (118)
+.+|++. .|.... +.+++..|-.+|+.+|.+..+ .+ ...++|-|.
T Consensus 2 ~~vK~~~-~~~~~~-~~~~~~~s~~dL~~~i~~~~~-----~~--~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRY-GGETRR-LSVPRDISFEDLRSKVAKRFG-----LD--NQSFTLKYQ 46 (81)
T ss_pred ccEEEEE-CCEEEE-EEECCCCCHHHHHHHHHHHhC-----CC--CCCeEEEEE
Confidence 5677776 566666 999999999999999987643 21 256777776
No 83
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=82.11 E-value=8.9 Score=23.93 Aligned_cols=45 Identities=13% Similarity=0.015 Sum_probs=32.9
Q ss_pred eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
... +++++..||.+|-+.+. ++ .....+..+|+++.. +.-+++||
T Consensus 15 ~~~-~~~~~~~tv~~ll~~l~---------~~--~~~v~v~vNg~iv~~-----~~~l~~gD 59 (70)
T PRK08364 15 EKE-IEWRKGMKVADILRAVG---------FN--TESAIAKVNGKVALE-----DDPVKDGD 59 (70)
T ss_pred ceE-EEcCCCCcHHHHHHHcC---------CC--CccEEEEECCEECCC-----CcCcCCCC
Confidence 444 78889999999998882 33 356888899999854 34467776
No 84
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=80.49 E-value=3.6 Score=27.40 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=29.2
Q ss_pred EEEEeCCCceeeeeecCCcccHHHHHHHhhhhC
Q 033465 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQW 42 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~w 42 (118)
.||+...|+.+. +.+.|+.++.+|++.|.++.
T Consensus 3 FK~~~~~GrvhR-f~~~~s~~~~~L~~~I~~Rl 34 (86)
T cd06409 3 FKFKDPKGRVHR-FRLRPSESLEELRTLISQRL 34 (86)
T ss_pred EEeeCCCCCEEE-EEecCCCCHHHHHHHHHHHh
Confidence 578889999999 99999999999999998774
No 85
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=79.04 E-value=9.1 Score=23.63 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=32.2
Q ss_pred CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 16 ~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+|+. +++++..|..+||..+. |. +. -+||.|-..+++.. +++||
T Consensus 6 N~k~---~~~~~~~tl~~lr~~~k----------~~--~D-I~I~NGF~~~~d~~-----L~e~D 49 (57)
T PF14453_consen 6 NEKE---IETEENTTLFELRKESK----------PD--AD-IVILNGFPTKEDIE-----LKEGD 49 (57)
T ss_pred CCEE---EEcCCCcCHHHHHHhhC----------CC--CC-EEEEcCcccCCccc-----cCCCC
Confidence 5644 57789999999999983 21 22 56999999887754 46666
No 86
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=78.17 E-value=4 Score=26.47 Aligned_cols=32 Identities=19% Similarity=0.448 Sum_probs=23.2
Q ss_pred EEEEeCCCceeeeeecC-CcccHHHHHHHhhhh
Q 033465 10 IKFRLTDGSDIGPKSFP-AATSVATLKESVLSQ 41 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~ 41 (118)
|.+|+.+.+....+.|| ...||.+||..|.++
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~ 33 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEK 33 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHH
Confidence 34566666666557776 779999999999765
No 87
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=77.57 E-value=6.4 Score=25.96 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=32.7
Q ss_pred EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe
Q 033465 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK 63 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk 63 (118)
||+.+.. ++. +.+++..+..+|+++|.++. .+| ++.++|-|.-.
T Consensus 5 vKV~f~~--tIa-Irvp~~~~y~~L~~ki~~kL-----kl~--~e~i~LsYkde 48 (80)
T cd06406 5 VKVHFKY--TVA-IQVARGLSYATLLQKISSKL-----ELP--AEHITLSYKSE 48 (80)
T ss_pred EEEEEEE--EEE-EEcCCCCCHHHHHHHHHHHh-----CCC--chhcEEEeccC
Confidence 4444432 787 99999999999999997653 455 47888888643
No 88
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=74.17 E-value=17 Score=23.40 Aligned_cols=69 Identities=12% Similarity=0.247 Sum_probs=44.4
Q ss_pred CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEE-EeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeC
Q 033465 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL-ISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQ 93 (118)
Q Consensus 15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL-I~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~ 93 (118)
++|..+. ++..++...--+.++-.++ ....+.|. +.--| =-+|..|+-++.+++||+..+ ++++|.++
T Consensus 3 VNGqPv~-VEANvnaPLh~v~akALe~--sgNvgQP~--ENWElkDe~G~vlD~~kKveD~Gftng------vkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQ-VEANVNAPLHPVRAKALEQ--SGNVGQPP--ENWELKDESGQVLDVNKKVEDFGFTNG------VKLFLSLK 71 (76)
T ss_pred eCCCcee-eecCCCCcchHHHHHHHhh--ccccCCCc--ccceeeccCCcEeeccchhhhcccccc------ceEEEEee
Confidence 4677777 7777777777666665543 11111221 22122 136889999999999999976 68888776
Q ss_pred C
Q 033465 94 P 94 (118)
Q Consensus 94 ~ 94 (118)
.
T Consensus 72 A 72 (76)
T PF10790_consen 72 A 72 (76)
T ss_pred c
Confidence 5
No 89
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=72.05 E-value=9.5 Score=27.10 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=36.7
Q ss_pred ecCC-cccHHHHHHHhhhhCCCcccCCC---CCCCceEEEeCC-----------------eec---CCCCcccccCCCCC
Q 033465 24 SFPA-ATSVATLKESVLSQWPKEKENGP---RTVKDVKLISAG-----------------KIL---ENNRTLGECRSPLC 79 (118)
Q Consensus 24 ~v~~-~~TV~~lK~~I~~~wp~~~~~~p---~~~~~~rLI~~G-----------------k~L---~D~~tL~~~~i~~~ 79 (118)
.++. ++||++|++.+.+.-+....-.| ...+.+|+++.. -+| +++.+|.++|+..+
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4675 99999999999875332221111 124667776653 367 77888999999854
No 90
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=70.69 E-value=1.4 Score=35.89 Aligned_cols=67 Identities=22% Similarity=0.383 Sum_probs=0.0
Q ss_pred eeEEEEEeCCCceeeeeecC---C--cccHHHHHHHhhhhCC-Cc----ccCCCCCCCceE-----EEeCCeecCCCCcc
Q 033465 7 QLEIKFRLTDGSDIGPKSFP---A--ATSVATLKESVLSQWP-KE----KENGPRTVKDVK-----LISAGKILENNRTL 71 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~---~--~~TV~~lK~~I~~~wp-~~----~~~~p~~~~~~r-----LI~~Gk~L~D~~tL 71 (118)
-|.|.+|-.-+-.+. +.++ | ++||.++|+.+.+.-- .+ .+.+| .+.+| |+|.-|.+.|.+||
T Consensus 78 sItV~Lks~rnp~l~-i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl 154 (309)
T PF12754_consen 78 SITVHLKSLRNPPLD-ISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTL 154 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEeecCCCCCce-eEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcH
Confidence 355555554443333 3332 3 6999999999975210 00 34566 47888 99999999999999
Q ss_pred cccCC
Q 033465 72 GECRS 76 (118)
Q Consensus 72 ~~~~i 76 (118)
.+..-
T Consensus 155 ~e~l~ 159 (309)
T PF12754_consen 155 AEVLA 159 (309)
T ss_dssp -----
T ss_pred HHHHh
Confidence 87743
No 91
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=68.01 E-value=14 Score=24.60 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=41.6
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh----CCCcccCCCCCCCceEEEeCCeecCCCCccccc
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ----WPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~----wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~ 74 (118)
.-|+|-..+|.... +.|++.+|+.++-+.++.+ -..+|.- .+..=-++.-|.++|-+.|-+.
T Consensus 3 ~vvkv~~~Dg~sK~-l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~L----vE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKS-LEVDERMTARDVCQLLVDKNHCQDDSSWTL----VEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeE-EEEcCCCcHHHHHHHHHHHhCCCCCCCeEE----EEecchhhhhhhccchHHHHHH
Confidence 45778889999999 9999999999999999753 0011210 1122224567788887766554
No 92
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=67.07 E-value=16 Score=26.99 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=36.6
Q ss_pred eeEEEEEeCCCceeeeeecCC-cccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc
Q 033465 7 QLEIKFRLTDGSDIGPKSFPA-ATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~-~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~ 74 (118)
.+.|++++ |... ++++. .+.+..+++...+.+| .+-+ |+-|+++....|++||
T Consensus 67 ~veL~V~v--Gri~--lele~~~~~ie~I~~iCee~lp-------f~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 67 EVELTVKV--GRII--LELEDEEDVIEKIREICEEVLP-------FGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEEE--eEEE--EEecCcHHHHHHHHHHHHHhCC-------CceE----eeeeEEeccCCchhhh
Confidence 45555554 6544 67777 7788888888765543 2112 4469999999999998
No 93
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=66.49 E-value=31 Score=29.24 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=53.5
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE-eCCeecCCCCcccccCCCCCCCCCCeE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI-SAGKILENNRTLGECRSPLCDIPGGVT 86 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI-~~Gk~L~D~~tL~~~~i~~~~~p~~~~ 86 (118)
.++++... .++++ +-++.+..|++|=-.|.+.--++..+ +.....-.|- -.|..|+-+++|.+.++.+||
T Consensus 3 ~RVtV~~~-~~~~D-laLPa~~PvaellP~ll~~~~~~~~~-~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~------ 73 (452)
T TIGR02958 3 CRVTVLAG-RRAVD-VALPADVPVAELIPDLVDLLDDRGAA-ELGAVRWALARAGGSPLDPDASLAEAGVRDGE------ 73 (452)
T ss_pred EEEEEeeC-Ceeee-eecCCCCcHHHHHHHHHHHhCccccc-CCCCcceEEecCCCCCCCCCCCHHHcCCCCCC------
Confidence 45666544 45677 89999999999988887643221100 1112334443 367799999999999999997
Q ss_pred EEEEEeCCCCc
Q 033465 87 TMHVVVQPPST 97 (118)
Q Consensus 87 tmhlv~~~~~~ 97 (118)
++++..+..+.
T Consensus 74 ~L~L~p~~~~~ 84 (452)
T TIGR02958 74 LLVLVPASATE 84 (452)
T ss_pred eEEEeeCCCCC
Confidence 77777654443
No 94
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.31 E-value=23 Score=24.94 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=43.8
Q ss_pred CCCCCceeEEEEEe------CCCceeeeeecC-CcccHHHHHHHhhhhCCCcccCCCC---CCCceEEEeC---------
Q 033465 1 MASVQDQLEIKFRL------TDGSDIGPKSFP-AATSVATLKESVLSQWPKEKENGPR---TVKDVKLISA--------- 61 (118)
Q Consensus 1 ~~~~~~~i~i~~~~------~~g~~~~~~~v~-~~~TV~~lK~~I~~~wp~~~~~~p~---~~~~~rLI~~--------- 61 (118)
||-++.+|.|++.- .....+ -.++ ++.||.+++..|.++-+-+..-.|. .-+.+|+++.
T Consensus 1 ~~~~~~tiTvRvIrsFeyRn~KnvV~--Hd~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nL 78 (127)
T KOG4147|consen 1 MAPGEVTITVRVIRSFEYRNFKNVVY--HDVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNL 78 (127)
T ss_pred CCCCccEEEEEEEeccccccccceeE--eccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceE
Confidence 67778888877643 222222 3555 4889999888887654333221111 1233444332
Q ss_pred -------Ce-ecC-CCCcccccCCCCC
Q 033465 62 -------GK-ILE-NNRTLGECRSPLC 79 (118)
Q Consensus 62 -------Gk-~L~-D~~tL~~~~i~~~ 79 (118)
.+ .|+ +.++|..|||...
T Consensus 79 vinldhDd~w~L~d~~ktL~~~GIenE 105 (127)
T KOG4147|consen 79 VINLDHDDRWLLKDEDKTLKAAGIENE 105 (127)
T ss_pred EEeccCCcceeecCccchHHHhccCcc
Confidence 33 454 5669999999853
No 95
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=66.09 E-value=16 Score=22.20 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=35.3
Q ss_pred CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+. ++++...||.+|.+.+. .+ ...+.+..+|+++..+ .-++..+.+||
T Consensus 4 iNg~~---~~~~~~~tv~~ll~~l~---------~~--~~~i~V~vNg~~v~~~-~~~~~~L~~gD 54 (65)
T cd00565 4 VNGEP---REVEEGATLAELLEELG---------LD--PRGVAVALNGEIVPRS-EWASTPLQDGD 54 (65)
T ss_pred ECCeE---EEcCCCCCHHHHHHHcC---------CC--CCcEEEEECCEEcCHH-HcCceecCCCC
Confidence 35655 46788899999998882 22 4788899999998543 12234567776
No 96
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=65.15 E-value=15 Score=32.13 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=44.3
Q ss_pred eeEEEEEeCC--CceeeeeecCCcccHHHHHHHhhhh-CCCc-ccCCCCCCCceEEEeC----Ce-ecCCCC--------
Q 033465 7 QLEIKFRLTD--GSDIGPKSFPAATSVATLKESVLSQ-WPKE-KENGPRTVKDVKLISA----GK-ILENNR-------- 69 (118)
Q Consensus 7 ~i~i~~~~~~--g~~~~~~~v~~~~TV~~lK~~I~~~-wp~~-~~~~p~~~~~~rLI~~----Gk-~L~D~~-------- 69 (118)
++.|.+...+ +..+. +.|=.-+||.++|+||... |..- ....|. ++++-|-+. |+ +|.|.+
T Consensus 189 ~ltl~v~~~~~~~~~i~-VkVLdCDTItQVKeKiLDavyk~~p~S~rp~-~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 189 TLTLNVVPQEEGSEEIP-VKVLDCDTITQVKEKILDAVYKNTPYSQRPR-ADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp EEEEEEECTTTSSTCEE-EEEETTSBHHHHHHHHHHHHTTTS-GGGS---GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred EEEEEEEecCCCCceEE-EEEEecCcccHHHHHHHHHHHcCCCCCCCCC-ccccceeeecCCCCcccccCCCCCcccCCC
Confidence 3555544432 23344 6666889999999999853 2110 112332 466666331 33 666542
Q ss_pred -----cccccCCCCCCCCCCeEEEEEEeCC
Q 033465 70 -----TLGECRSPLCDIPGGVTTMHVVVQP 94 (118)
Q Consensus 70 -----tL~~~~i~~~~~p~~~~tmhlv~~~ 94 (118)
||..|++++| .+|-++.+.
T Consensus 267 wkrLNTL~HY~V~dg------a~vaLv~k~ 290 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDG------ATVALVPKQ 290 (539)
T ss_dssp EEE--BHHHHT--TT------EEEEEEES-
T ss_pred ceEeccHhhcCCCCC------ceEEEeecc
Confidence 6788899987 577777764
No 97
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=63.95 E-value=17 Score=23.21 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=37.5
Q ss_pred EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eecCCCC
Q 033465 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILENNR 69 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L~D~~ 69 (118)
+++.+.+|.... +.+.|..||.++=+++-+. -++..+.-.+++...+ +.++.++
T Consensus 2 ~~V~LPng~~t~-V~vrpg~ti~d~L~~~c~k-----r~l~~~~~~v~~~~~~~~~~~~~~~ 57 (72)
T cd01760 2 CRVYLPNGQRTV-VPVRPGMSVRDVLAKACKK-----RGLNPECCDVFLLGLDEKKPLDLDT 57 (72)
T ss_pred EEEECcCCCeEE-EEECCCCCHHHHHHHHHHH-----cCCCHHHEEEEEecCCCcCCcCchh
Confidence 567788999988 9999999999999988754 2332223456666556 5555433
No 98
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=60.08 E-value=20 Score=23.40 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=25.4
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCC
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWP 43 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp 43 (118)
.||+.. +|..+. +.++++.+..+|++.|....+
T Consensus 2 ~vK~~~-~~d~~r-~~l~~~~~~~~L~~~i~~r~~ 34 (82)
T cd06407 2 RVKATY-GEEKIR-FRLPPSWGFTELKQEIAKRFK 34 (82)
T ss_pred EEEEEe-CCeEEE-EEcCCCCCHHHHHHHHHHHhC
Confidence 445543 556676 999999999999999987653
No 99
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=59.05 E-value=5.8 Score=32.24 Aligned_cols=49 Identities=33% Similarity=0.503 Sum_probs=38.8
Q ss_pred CCCceeeeeecC-CcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcc
Q 033465 15 TDGSDIGPKSFP-AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTL 71 (118)
Q Consensus 15 ~~g~~~~~~~v~-~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL 71 (118)
.+|.... +.+. -+..|..+|+++. +...++ ++.|++.|.|.+|.|+..+
T Consensus 290 ~dg~~~~-~~~~~~~~~~~~~k~k~~-----~~~~i~--~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIK-ITVQSLSENVASLKEKIA-----DESQIP--ANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceee-eccccccccccccccccc-----cccccc--hhheeeccCCcccCccccc
Confidence 5677776 6666 7788999999994 455676 4999999999999998544
No 100
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=58.89 E-value=27 Score=25.69 Aligned_cols=53 Identities=19% Similarity=0.326 Sum_probs=37.3
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~ 74 (118)
.+.|++.+ |..+ +++.....+.++++...+-+|. + -+ |.-|+++.+..|++||
T Consensus 66 ~veL~V~V--GrI~--le~~~~~~i~~I~eiC~e~~pF-----~--y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 66 DVELRVQV--GRII--LELEDEDIVEEIEEICKEMLPF-----G--YE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEEE--eEEE--EEecCHHHHHHHHHHHHhhCCC-----c--eE----eeeeeEeecCCchhhh
Confidence 45555544 6444 6777888899999888665542 1 11 4579999999999998
No 101
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=58.76 E-value=54 Score=22.17 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=42.1
Q ss_pred eeEEEEEeCC-CceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCC-ceEEEeCCe--ecCCCCcccccC
Q 033465 7 QLEIKFRLTD-GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVK-DVKLISAGK--ILENNRTLGECR 75 (118)
Q Consensus 7 ~i~i~~~~~~-g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~-~~rLI~~Gk--~L~D~~tL~~~~ 75 (118)
.+.|.+...+ ...++ +.+++++|+.+|.+.+..++ .........++ +--|==.|| .|-.+..|.++.
T Consensus 17 ~i~v~i~~~~~~~~~t-~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~ 87 (108)
T smart00144 17 KILIVVHLEKDQQTKT-LKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFE 87 (108)
T ss_pred eEEEEEEEccCceeEE-EEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechH
Confidence 4556665543 45566 89999999999999888764 22222222122 445544555 777777888774
No 102
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=57.25 E-value=23 Score=21.85 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=25.1
Q ss_pred EEEEEeCCCceeeeeecC-CcccHHHHHHHhhhhCC
Q 033465 9 EIKFRLTDGSDIGPKSFP-AATSVATLKESVLSQWP 43 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~wp 43 (118)
.||++..+ .... +.++ .+.|..+|+.+|.+.++
T Consensus 2 ~vK~~~~~-~~~~-~~~~~~~~s~~~L~~~i~~~~~ 35 (81)
T cd05992 2 RVKVKYGG-EIRR-FVVVSRSISFEDLRSKIAEKFG 35 (81)
T ss_pred cEEEEecC-CCEE-EEEecCCCCHHHHHHHHHHHhC
Confidence 46666654 4454 7888 99999999999987753
No 103
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=53.98 E-value=52 Score=20.51 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=39.0
Q ss_pred eEEEEEeCCCc----eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE----eCC--eecCCCCc
Q 033465 8 LEIKFRLTDGS----DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI----SAG--KILENNRT 70 (118)
Q Consensus 8 i~i~~~~~~g~----~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI----~~G--k~L~D~~t 70 (118)
-.|+|-..++. ... +.+++++|+.+|-+.+.++. +++.+++...|. ..| |.|+|++.
T Consensus 3 ~~lrVy~~~~~~~~~~k~-i~v~~~tTa~evi~~~l~k~-----~l~~~~~~y~L~~~~~~~~~er~L~~~E~ 69 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKT-IKVSSSTTAREVIEMALEKF-----GLAEDPSDYCLVEVEESGGEERPLDDDEC 69 (93)
T ss_dssp EEEEEEETTSSSCCSEEE-EEEETTSBHHHHHHHHHHHT-----TTSSSGGGEEEEEEECTTTEEEEETTTSB
T ss_pred eEEEEEcCCCCCCccEEE-EEECCCCCHHHHHHHHHHHh-----CCCCCCCCEEEEEEEcCCCEEEEcCCCCc
Confidence 34666667776 666 99999999999999998763 233446777774 222 36765553
No 104
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=53.91 E-value=50 Score=20.30 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=37.1
Q ss_pred eeEEEEEeCCCc---eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCC
Q 033465 7 QLEIKFRLTDGS---DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILEN 67 (118)
Q Consensus 7 ~i~i~~~~~~g~---~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D 67 (118)
.|.|+|.+.+|. .-.++.++.+.|..+|-+.|.+-.+.+++. -...++..|..|.+
T Consensus 1 qv~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~-----vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 1 QVQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEP-----VPFDFLINGEELRT 59 (65)
T ss_pred CEEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCC-----CcEEEEECCEEeec
Confidence 367888887773 112289999999999988876554222332 34567778877753
No 105
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=53.74 E-value=39 Score=20.95 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=25.0
Q ss_pred eeEEEEEeCCCceeeeeecC---CcccHHHHHHHh
Q 033465 7 QLEIKFRLTDGSDIGPKSFP---AATSVATLKESV 38 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~---~~~TV~~lK~~I 38 (118)
++++.|++.+|+.+. +.++ ++.|-+++|...
T Consensus 2 tL~l~F~~~~gk~~t-i~i~~pk~~lt~~~V~~~m 35 (69)
T PF11148_consen 2 TLELVFKTEDGKTFT-ISIPNPKEDLTEAEVKAAM 35 (69)
T ss_pred EEEEEEEcCCCCEEE-EEcCCCCCCCCHHHHHHHH
Confidence 588999999999998 8885 566777777654
No 106
>smart00455 RBD Raf-like Ras-binding domain.
Probab=53.46 E-value=49 Score=20.75 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=36.5
Q ss_pred EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eecC
Q 033465 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILE 66 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L~ 66 (118)
.++.+.+|.... +.+-|+.||.++=+++.+. -+.. ++...+...| +.|+
T Consensus 2 ~~v~LP~~~~~~-V~vrpg~tl~e~L~~~~~k-----r~l~--~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRTV-VKVRPGKTVRDALAKALKK-----RGLN--PECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEEE-EEECCCCCHHHHHHHHHHH-----cCCC--HHHEEEEEcCCCccee
Confidence 467788999998 9999999999999998765 2332 4666666644 4554
No 107
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=52.94 E-value=49 Score=19.92 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=34.4
Q ss_pred CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+.+ +++...||.+|.+.+. ++ +..+.+.++|+++.-+ .-.++-+++||
T Consensus 3 iNg~~~---~~~~~~tv~~ll~~l~---------~~--~~~v~v~vN~~iv~~~-~~~~~~L~~gD 53 (64)
T TIGR01683 3 VNGEPV---EVEDGLTLAALLESLG---------LD--PRRVAVAVNGEIVPRS-EWDDTILKEGD 53 (64)
T ss_pred ECCeEE---EcCCCCcHHHHHHHcC---------CC--CCeEEEEECCEEcCHH-HcCceecCCCC
Confidence 466554 6678889999998872 22 3678888999988422 12234577776
No 108
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=52.84 E-value=18 Score=30.05 Aligned_cols=64 Identities=25% Similarity=0.283 Sum_probs=47.9
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC---eecC--CCCcccccCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG---KILE--NNRTLGECRSPL 78 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G---k~L~--D~~tL~~~~i~~ 78 (118)
-.|.+|+.+|++.- ..|-.+++|..|=..+..+ ..+.+ -...+|+++= |.|. -+.||.++||.+
T Consensus 278 t~i~vR~pdG~R~q-rkf~~sepv~ll~~~~~s~----~dg~~--k~~FkLv~a~P~~k~l~~~~daT~~eaGL~n 346 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQ-RKFLKSEPVQLLWSFCYSH----MDGSD--KKRFKLVQAIPASKTLDYGADATFKEAGLAN 346 (356)
T ss_pred eEEEEecCCccHHH-HhhccccHHHHHHHHHHHh----hcccc--cccceeeecccchhhhhccccchHHHhccCc
Confidence 35899999999987 8888888888776666544 22333 3789999988 6663 455999999985
No 109
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=52.19 E-value=68 Score=21.37 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=36.6
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eecCCCCcccccCCCCC
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILENNRTLGECRSPLC 79 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L~D~~tL~~~~i~~~ 79 (118)
+-+|..+|+.++=++++.+- -+.--.|.+-.-+|+-+.| +.+..+.++++.||..-
T Consensus 19 v~VDt~dTmdqVA~k~A~Hs-VGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~ 76 (85)
T PF06234_consen 19 VPVDTEDTMDQVAAKVAHHS-VGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPM 76 (85)
T ss_dssp EEEETT-BHHHHHHHHHTTT-TTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TT
T ss_pred EEeCCCCcHHHHHHHHhhhh-cceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcc
Confidence 67899999999999998651 1111112112478888999 99999999999999854
No 110
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=51.88 E-value=64 Score=20.95 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=33.8
Q ss_pred CceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe-CCeecCCCCcccccCCCCCC
Q 033465 17 GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS-AGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 17 g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~-~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+..+. +.+++..||+++-|.+ ++|. ..+.+|. +|+.-+= ++.+++||
T Consensus 22 ~~~~~-~~~~~~~tvkd~IEsL---------GVP~--tEV~~i~vNG~~v~~-----~~~~~~Gd 69 (81)
T PF14451_consen 22 GGPFT-HPFDGGATVKDVIESL---------GVPH--TEVGLILVNGRPVDF-----DYRLKDGD 69 (81)
T ss_pred CCceE-EecCCCCcHHHHHHHc---------CCCh--HHeEEEEECCEECCC-----cccCCCCC
Confidence 34555 7889999999998887 5774 6777764 6665542 36678886
No 111
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=50.85 E-value=46 Score=24.60 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=35.8
Q ss_pred eEEEEEeCCCceeeeeecCCcc-cHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc
Q 033465 8 LEIKFRLTDGSDIGPKSFPAAT-SVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~-TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~ 74 (118)
+.+++++ |..+ +++.+.+ +++.+++...+-+|-+. + ++-|+++.+..|.++|
T Consensus 76 ~eL~Vkv--Gri~--~eie~e~~~~e~ie~ic~e~lPf~y-------~----v~vG~F~r~kpTVTDy 128 (165)
T COG4055 76 IELKVKV--GRII--LEIEDEDETMEKIEEICDEMLPFGY-------E----VRVGKFTRRKPTVTDY 128 (165)
T ss_pred EEEEEEe--eEEE--EEecCcHhHHHHHHHHHHHhCCCce-------e----eeeeeeeccCCcchhh
Confidence 4455544 6555 6776664 88888888765554322 2 4679999999999998
No 112
>PF00894 Luteo_coat: Luteovirus coat protein; InterPro: IPR001517 Barley yellow dwarf virus (BYDV) can be separated into two groups based on serological relationships, presumably governed by the viral capsid structure []. Coding regions of coat proteins have been identified for the MAV-PS1, P-PAV (group 1) and NY-RPV (group 2) isolates of BYDV. Group 1 proteins show 71% sequence similarity to each other, 51% similarity to those of group 2, and a high degree of similarity to those from other luteoviruses (including coat proteins from Beet western yellows virus (BWYV) [] and Potato leafroll virus (PLrV) [, ]). Among luteovirus coat protein sequences in general, several highly conserved domains can be identified, while other domains differentiate group 1 isolates from group 2 and other luteoviruses. Sequence comparisons between the genomes of PLrV, BWYV and BYDV have revealed ~65% protein sequence similarity between the capsid proteins of BWYV and PLrV and ~45% similarity between BYDV and PLrV []. The N-terminal regions of these sequences, like those of many plant virus capsid proteins, is highly basic. These regions may be involved in protein-RNA interaction.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=49.63 E-value=42 Score=24.27 Aligned_cols=56 Identities=13% Similarity=0.264 Sum_probs=36.8
Q ss_pred eeEEEEEeC----CCceeeeeecCCcccHHHHHHHhhh---------hCCCcc----cCCCCCCCceEEEeCCe
Q 033465 7 QLEIKFRLT----DGSDIGPKSFPAATSVATLKESVLS---------QWPKEK----ENGPRTVKDVKLISAGK 63 (118)
Q Consensus 7 ~i~i~~~~~----~g~~~~~~~v~~~~TV~~lK~~I~~---------~wp~~~----~~~p~~~~~~rLI~~Gk 63 (118)
.|.|.|+.- +.-.+. +|+||..+...|...|.. .||.+. +-.+.+.+|.||+|.|-
T Consensus 45 ~v~v~f~SeAsstt~GsIa-yElD~~ck~s~l~S~in~f~I~k~g~ksf~a~~InG~~w~~ss~dQF~iLYKgN 117 (138)
T PF00894_consen 45 NVKVEFISEASSTTSGSIA-YELDPHCKQSTLGSYINKFSITKNGSKSFPAKQINGKEWHDSSEDQFRILYKGN 117 (138)
T ss_pred EEEEEEEeecccCCCccEE-EEecCccchhhhhheeeeEeeecccccccchhccCCccccccCcceEEEEEecC
Confidence 355666652 223455 899999999999887743 344432 12344579999999994
No 113
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=48.81 E-value=16 Score=23.76 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=16.2
Q ss_pred eecCCcccHHHHHHHhhhh
Q 033465 23 KSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~ 41 (118)
+++..++|+.++|+.+|++
T Consensus 4 l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 4 LRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEETT-BHHHHHHHHHHH
T ss_pred EEccCcCcHHHHHHHHHHH
Confidence 7788999999999999875
No 114
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=47.40 E-value=41 Score=21.27 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=24.5
Q ss_pred EEEeCCCceeeeeecCCcccHHHHHHHhhhhCCC
Q 033465 11 KFRLTDGSDIGPKSFPAATSVATLKESVLSQWPK 44 (118)
Q Consensus 11 ~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~ 44 (118)
.|+. +|.++. +-+|+.|+.+||...+.+||+
T Consensus 9 ~F~~-~g~~L~--DP~p~~spe~V~~~ya~~YPe 39 (65)
T PF14454_consen 9 VFRY-NGITLP--DPNPSLSPEEVRDFYAAQYPE 39 (65)
T ss_pred EEEE-CCEECC--CCCCCCCHHHHHHHHhhhChh
Confidence 3444 776665 557999999999999999985
No 115
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=47.34 E-value=40 Score=22.09 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=28.0
Q ss_pred eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC
Q 033465 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG 62 (118)
Q Consensus 19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G 62 (118)
++. +.+.+..+..+|.++|.++.+ .+++..+|-|.-
T Consensus 8 TVa-i~v~~g~~y~~L~~~ls~kL~-------l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVA-LRAPRGADVSSLRALLSQALP-------QQAQRGQLSYRA 43 (78)
T ss_pred EEE-EEccCCCCHHHHHHHHHHHhc-------CChhhcEEEecC
Confidence 566 889999999999999987753 235778887753
No 116
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=47.25 E-value=55 Score=24.72 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=28.8
Q ss_pred eeeeecCCcccHHHHHHHhhhhCCCcccCCC-CCCCceEE--EeCCee---cCCCCccccc
Q 033465 20 IGPKSFPAATSVATLKESVLSQWPKEKENGP-RTVKDVKL--ISAGKI---LENNRTLGEC 74 (118)
Q Consensus 20 ~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p-~~~~~~rL--I~~Gk~---L~D~~tL~~~ 74 (118)
++ +-++.+.||.+|-+.+.++- +.+ .+...+|| ++.||+ +..+..|.+.
T Consensus 36 ~~-~~vpk~~tV~Dll~~l~~k~-----~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 36 YE-LLVPKTGTVSDLLEELQKKV-----GFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EE-E--BTT-BHHHHHHHHHTT---------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EE-EEECCCCCHHHHHHHHHHHc-----CCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 44 77899999999999998652 122 12357787 788885 5667777665
No 117
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=46.85 E-value=76 Score=21.09 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=25.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQW 42 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~w 42 (118)
+.||+.. .|..+. +.++++.+-.+|.++|....
T Consensus 3 ikVKv~~-~~Dv~~-i~v~~~i~f~dL~~kIrdkf 35 (86)
T cd06408 3 IRVKVHA-QDDTRY-IMIGPDTGFADFEDKIRDKF 35 (86)
T ss_pred EEEEEEe-cCcEEE-EEcCCCCCHHHHHHHHHHHh
Confidence 4455543 566666 89999999999999997653
No 118
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=45.92 E-value=59 Score=21.53 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=41.4
Q ss_pred CceeEEEEEeC-CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe--ecCCCCcccccC
Q 033465 5 QDQLEIKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK--ILENNRTLGECR 75 (118)
Q Consensus 5 ~~~i~i~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk--~L~D~~tL~~~~ 75 (118)
...+.|.+.+. ++..++ +.++.+.|+.+|-+.+..++- ..-..+...++--|==.|+ .|..+..|.+|.
T Consensus 14 ~~~i~v~v~~~~~~~~~t-~~~~~~~t~~~li~~~l~k~~-~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFT-FQVDPNSTPEELIAQALKKKL-KDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp SSEEEEEEEETTCSEEEE-EEEETTS-HHHHHHHHHHHHH-HHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred CCeEEEEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHHHH-hhcCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 34677888777 566777 999999999999988886621 1111111111444433444 777778888884
No 119
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=45.88 E-value=13 Score=24.36 Aligned_cols=11 Identities=27% Similarity=1.114 Sum_probs=9.0
Q ss_pred CCCCCeEEeeC
Q 033465 108 PKQNKCVCVIL 118 (118)
Q Consensus 108 ~~~~~c~C~i~ 118 (118)
...++|+|++|
T Consensus 102 p~h~nCRC~~i 112 (112)
T PF04233_consen 102 PEHPNCRCTVI 112 (112)
T ss_pred CCCCCCeeeeC
Confidence 45699999986
No 120
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=42.29 E-value=76 Score=25.01 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=43.0
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE 66 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~ 66 (118)
++++.|.|-|+..+|.-++ +.+|-..-|.-+|..|..+ .|-. . ...|-|-|.-|+-+
T Consensus 23 ~~~d~itlef~~~DGtlit-~~~Df~~~v~i~kalilge----~e~g-q-s~yq~~cf~~~~~~ 79 (240)
T PF14941_consen 23 SEEDTITLEFQRSDGTLIT-QLADFKQEVQIFKALILGE----EERG-Q-SQYQALCFVTKLQK 79 (240)
T ss_pred CCCceEEEEEEcCCCcEEe-eehhhhhHHHHHHHHHcCh----hhhc-c-CcceeEEEEEeecc
Confidence 4677899999999999999 9999999999999999643 2321 1 35677766665543
No 121
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=42.04 E-value=80 Score=19.89 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=29.4
Q ss_pred eecCC-cccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 23 KSFPA-ATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 23 ~~v~~-~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+++++ ..||.+|++.|.++.|. +... .....++.--+|+.-.++ .-+++||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~-~~~~-~~~~~~~~aVN~~~~~~~-----~~l~dgD 70 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDR-WALA-LEDGKLLAAVNQTLVSFD-----HPLTDGD 70 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCcc-HHhh-hcCCCEEEEECCEEcCCC-----CCCCCCC
Confidence 45543 58999999999887653 2110 012445555566554332 3467776
No 122
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=42.02 E-value=28 Score=19.45 Aligned_cols=13 Identities=8% Similarity=0.373 Sum_probs=11.5
Q ss_pred CCceEEEeCCeec
Q 033465 53 VKDVKLISAGKIL 65 (118)
Q Consensus 53 ~~~~rLI~~Gk~L 65 (118)
..++.+.|+|++.
T Consensus 5 ~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 5 TAQLTIFYGGQVC 17 (36)
T ss_pred CCcEEEEECCEEE
Confidence 5899999999976
No 123
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=39.91 E-value=1.9e+02 Score=25.04 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=45.7
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC----Ce--ecCCCCcccccCCCCCC
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA----GK--ILENNRTLGECRSPLCD 80 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~----Gk--~L~D~~tL~~~~i~~~~ 80 (118)
.++||-..|... ++++++++.+-|-.+|....- .. .+++++-+.-+ |- -+..++|+.++|+..|+
T Consensus 2 i~rfRsk~G~~R--ve~qe~d~lg~l~~kll~~~~--~n---~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGq 72 (571)
T COG5100 2 IFRFRSKEGQRR--VEVQESDVLGMLSPKLLAFFE--VN---YSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQ 72 (571)
T ss_pred eEEEecCCCcee--eeccccchhhhhhHHHHhhhc--cC---CCccceEEEeCCCCCceeeecccccChhhhccccCc
Confidence 578999999777 699999999999999986531 11 23455554332 22 14456799999999885
No 124
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=39.79 E-value=31 Score=22.58 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=17.2
Q ss_pred eecCCcccHHHHHHHhhhh
Q 033465 23 KSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~ 41 (118)
+.+..++|+.++|+.+|++
T Consensus 4 l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 4 LRVLREATLSTIKHELFKQ 22 (78)
T ss_pred EEccccccHHHHHHHHHHH
Confidence 7888999999999999865
No 125
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=39.69 E-value=27 Score=25.54 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=38.7
Q ss_pred cccHHHHHHHhhhhCCCccc----------------CCCCCCCceEEEeCCe-ecCCCCcccccCCCCCCCCCCeEEEEE
Q 033465 28 ATSVATLKESVLSQWPKEKE----------------NGPRTVKDVKLISAGK-ILENNRTLGECRSPLCDIPGGVTTMHV 90 (118)
Q Consensus 28 ~~TV~~lK~~I~~~wp~~~~----------------~~p~~~~~~rLI~~Gk-~L~D~~tL~~~~i~~~~~p~~~~tmhl 90 (118)
++|..+|-..|.+--|+..- +.+. ...+=-.+.|+ ..+|++||++++++-|| -+.+
T Consensus 61 datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~y~-~RevG~t~~g~Kg~ddnktL~~~kf~iGD------~lDV 133 (151)
T KOG3391|consen 61 DATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPRYI-VREVGTTCLGRKGIDDNKTLQQTKFEIGD------YLDV 133 (151)
T ss_pred hhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCCce-eeeecccccCcccCCccchhhhCCccccc------eEEE
Confidence 47888888888765443221 0110 12222334566 56899999999999887 5666
Q ss_pred EeCCCC
Q 033465 91 VVQPPS 96 (118)
Q Consensus 91 v~~~~~ 96 (118)
.+.++.
T Consensus 134 aI~~p~ 139 (151)
T KOG3391|consen 134 AITPPN 139 (151)
T ss_pred EecCcc
Confidence 666543
No 126
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=38.84 E-value=90 Score=18.92 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=34.6
Q ss_pred CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+.+ ++++..|+.+|=+.+ +++ ...+-+.+.|.++.-.+- +.+ +++||
T Consensus 5 vNG~~~---~~~~~~tl~~ll~~l---------~~~--~~~vav~~N~~iv~r~~~-~~~-L~~gD 54 (65)
T PRK05863 5 VNEEQV---EVDEQTTVAALLDSL---------GFP--EKGIAVAVDWSVLPRSDW-ATK-LRDGA 54 (65)
T ss_pred ECCEEE---EcCCCCcHHHHHHHc---------CCC--CCcEEEEECCcCcChhHh-hhh-cCCCC
Confidence 467654 567888988887766 233 478999999998864332 234 78887
No 127
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=38.51 E-value=70 Score=26.85 Aligned_cols=57 Identities=12% Similarity=-0.006 Sum_probs=42.4
Q ss_pred CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCC--CcccccCCCCCC
Q 033465 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN--RTLGECRSPLCD 80 (118)
Q Consensus 16 ~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~--~tL~~~~i~~~~ 80 (118)
..+.+. +.+...-....++..++.. .+++ .+..-|||+++.|.++ +.|.++|+..+|
T Consensus 11 ~~~~~~-i~v~~dg~L~nl~aL~~~d-----~g~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 11 FEKKFP-IPVTTDGELNNLAALCWKD-----TGIV--YDPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred ceeeec-cccccccchhhHHHHHHHH-----hCcc--cchhhcccCCCccccchhhhhhhcccccce
Confidence 444554 7777777888888888533 2444 4788899999999654 688999999875
No 128
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=37.95 E-value=90 Score=18.62 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=33.0
Q ss_pred CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+. +++++..||.+|=+.+ +++ ...+-+.++|.++.-. .-.+.-+++||
T Consensus 5 vNG~~---~~~~~~~tl~~lL~~l---------~~~--~~~vav~vNg~iv~r~-~~~~~~l~~gD 55 (66)
T PRK05659 5 LNGEP---RELPDGESVAALLARE---------GLA--GRRVAVEVNGEIVPRS-QHASTALREGD 55 (66)
T ss_pred ECCeE---EEcCCCCCHHHHHHhc---------CCC--CCeEEEEECCeEeCHH-HcCcccCCCCC
Confidence 47765 4667888999887766 233 3677788899887622 12233467776
No 129
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=37.67 E-value=85 Score=20.61 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=24.3
Q ss_pred eEEEEEeCCCceeeeeecCC--cccHHHHHHHhhhh
Q 033465 8 LEIKFRLTDGSDIGPKSFPA--ATSVATLKESVLSQ 41 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~--~~TV~~lK~~I~~~ 41 (118)
|.||+.. .|..+. +.+++ +.|-.+|++.|...
T Consensus 1 V~vKaty-~~d~~r-f~~~~~~~~~~~~L~~ev~~r 34 (81)
T cd06396 1 VNLKVTY-NGESQS-FLVSDSENTTWASVEAMVKVS 34 (81)
T ss_pred CEEEEEE-CCeEEE-EEecCCCCCCHHHHHHHHHHH
Confidence 3455544 566776 89998 77999999999765
No 130
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.61 E-value=50 Score=26.71 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=31.0
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
+.-.|.||+.+|.++. ..|++..+...|+.-|..+
T Consensus 209 s~crlQiRl~DG~Tl~-~tF~a~E~L~~VR~wVd~n 243 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLT-QTFNARETLAAVRLWVDLN 243 (290)
T ss_pred cceEEEEEcCCCCeee-eecCchhhHHHHHHHHHHh
Confidence 4567889999999999 9999999999999999643
No 131
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=36.02 E-value=76 Score=22.89 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHH
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATL 34 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~l 34 (118)
.+..+.|+|...+|...+ +++++..|+.+.
T Consensus 32 ~~g~v~I~~~~~dG~~~~-v~~~~G~sLLea 61 (143)
T PTZ00490 32 TPGKVKVCVKKRDGTHCD-VEVPVGMSLMHA 61 (143)
T ss_pred CCCcEEEEEEcCCCCEEE-EEECCCccHHHH
Confidence 456799999999999888 999999998875
No 132
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=35.97 E-value=1.3e+02 Score=27.42 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=37.7
Q ss_pred EEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecC
Q 033465 12 FRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE 66 (118)
Q Consensus 12 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~ 66 (118)
|.+.++..++ +.++++.|...+++.|..+ .++| .+.|=|+|.|...-
T Consensus 319 Fs~~~~~~~~-~~~~~~ntl~~~~~~I~~~-----Tgip--e~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 319 FSMVQATSHE-YYVHADNTLHSLIERISKQ-----TGIP--EGKQELLFEGGLSH 365 (732)
T ss_pred EeeccceEEE-EecChhhhHHHHHHHHHHh-----hCCC--CccceeeeecCccc
Confidence 4456788887 9999999999999999754 5677 48899999988443
No 133
>KOG4261 consensus Talin [Cytoskeleton]
Probab=35.41 E-value=74 Score=29.56 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=45.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe------CCeecCCCCcccccCCCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS------AGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~------~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+.|+|-.. +...+ +.|+|+++|.+--..|++++|+...+ | +...|.- .|-+|+...+|..|=+..+|
T Consensus 4 lsl~i~~~-~v~kt-mqfepst~vyda~~~ire~~~~~~~~-a---~~yglf~~de~~~k~~wle~grt~~~y~~~n~d 76 (1003)
T KOG4261|consen 4 LSLKISSA-NVVKT-MQFEPSTLVYDACKVIREKFAEADVG-A---SEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGD 76 (1003)
T ss_pred eEEEEEec-ceeee-eeecCchHHHHHHHHHHHHhhhcccC-c---hhcceeeecCCcccceeecCCccHHHHHHhccc
Confidence 45555444 66666 99999999999999999888765544 3 3333322 35577777787777444443
No 134
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.86 E-value=39 Score=29.38 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=48.1
Q ss_pred CCCceeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465 3 SVQDQLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~ 79 (118)
.+-++++|+.-...+. +.-.++-.-..|-.++...|++++ +++. +.+|.|-+||+|.-.+||.+-|++.+
T Consensus 33 TGlat~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakkl-----gi~e--nhvKci~~~Kils~~ktlaeQglk~n 103 (568)
T KOG2561|consen 33 TGLATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKL-----GIKE--NHVKCIINGKILSCRKTLAEQGLKIN 103 (568)
T ss_pred cCccceeeEeccccccchhhhhhcccccccHHHHHHHHHHc-----CCch--hhhheeeccceeecccchhhhhhhhh
Confidence 3456666665543322 221123334567788999997653 5664 59999999999999999999998854
No 135
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=32.72 E-value=1.2e+02 Score=26.32 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=44.6
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecC--C-CCcccccCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE--N-NRTLGECRSPL 78 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~--D-~~tL~~~~i~~ 78 (118)
.+.++|.||+.+|..+. =+|+.+.-...||+.|...---+.... .+---|=-|... | .++|.++.+-.
T Consensus 312 ~d~~rLqiRLPdGssft-e~Fps~~vL~~vr~yvrq~~~i~~g~f-----~LatpyPRReft~eDy~KtllEl~L~p 382 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFT-EKFPSTSVLRMVRDYVRQNQTIGLGAF-----DLATPYPRREFTDEDYDKTLLELRLFP 382 (506)
T ss_pred cceeEEEEecCCccchh-hcCCcchHHHHHHHHHHhcccccccce-----eeccccccccccchhhhhhHHHhccCC
Confidence 47799999999999998 788888888899999974311011111 122234444442 2 35899999874
No 136
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=32.68 E-value=1.3e+02 Score=18.82 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=33.7
Q ss_pred EEEEeCC---CceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--e----CCeecCCCC
Q 033465 10 IKFRLTD---GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--S----AGKILENNR 69 (118)
Q Consensus 10 i~~~~~~---g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~----~Gk~L~D~~ 69 (118)
|+|-..+ +...+ +.++.++|..+|-+.+.++. ++..++..-.|+ + ..|.|+|++
T Consensus 2 ikV~~~~~~~~~~kt-i~V~~~~t~~~Vi~~~l~k~-----~l~~~~~~y~L~ev~~~~~~er~L~~~e 64 (87)
T cd01768 2 LRVYPEDPSGGTYKT-LRVSKDTTAQDVIQQLLKKF-----GLDDDPEDYALVEVLGDGGLERLLLPDE 64 (87)
T ss_pred EEEeCCcCCCccEEE-EEECCCCCHHHHHHHHHHHh-----CCcCCcccEEEEEEECCceEEEEeCCCC
Confidence 3444444 55566 99999999999999997653 222124555553 2 235676555
No 137
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=32.64 E-value=1.3e+02 Score=18.80 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=38.8
Q ss_pred EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc
Q 033465 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~ 74 (118)
+++-+.+|.... +.+-|+.||.++=.++.+. -++..+.-.+++.-..+.|+.++..+.+
T Consensus 3 ~~v~LP~~q~t~-V~vrpg~ti~d~L~~~~~k-----r~L~~~~~~V~~~~~~k~l~~~~d~~~L 61 (71)
T PF02196_consen 3 CRVHLPNGQRTV-VQVRPGMTIRDALSKACKK-----RGLNPECCDVRLVGEKKPLDWDQDSSSL 61 (71)
T ss_dssp EEEEETTTEEEE-EEE-TTSBHHHHHHHHHHT-----TT--CCCEEEEEEEEEEEE-TTSBGGGG
T ss_pred EEEECCCCCEEE-EEEcCCCCHHHHHHHHHHH-----cCCCHHHEEEEEcCCCccccCCCceeee
Confidence 567789999988 9999999999998888754 2332223455555566788766554443
No 138
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=32.05 E-value=70 Score=21.88 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.6
Q ss_pred EEEeCCeecCCCCccccc
Q 033465 57 KLISAGKILENNRTLGEC 74 (118)
Q Consensus 57 rLI~~Gk~L~D~~tL~~~ 74 (118)
.|-|+||.|..+.+|++|
T Consensus 3 ~LW~aGK~l~~~k~l~dy 20 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY 20 (98)
T ss_pred eEEeccccccCCCcHHHh
Confidence 478999999999999999
No 139
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=30.74 E-value=1.2e+02 Score=19.87 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=22.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHH
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKES 37 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~ 37 (118)
.+|+|+..+|.... +++++..|+.+.=..
T Consensus 3 ~~v~~~~~~~~~~~-~~~~~g~tLLda~~~ 31 (97)
T TIGR02008 3 YKVTLVNPDGGEET-IECPDDQYILDAAEE 31 (97)
T ss_pred EEEEEEECCCCEEE-EEECCCCcHHHHHHH
Confidence 45677667887777 889999999877443
No 140
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=30.64 E-value=1.4e+02 Score=19.97 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=39.0
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeCCCCchhh
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKA 100 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~~~~~~~~ 100 (118)
..+|=...+..||..+..+ -++.. +.=-+......|++.++|-+-+++ |+ .++.+.+-+.+.++.++
T Consensus 7 q~mDI~epl~~Lk~lLe~R-----l~~~L--~~~~f~LQD~~L~~~k~L~dQcVq-ge---GlVQlnvQi~s~~~~~r 73 (88)
T PF11620_consen 7 QHMDIREPLSTLKKLLERR-----LGISL--SDYEFWLQDIQLEPHKSLVDQCVQ-GE---GLVQLNVQIKSNQGEPR 73 (88)
T ss_dssp EEEESSSBGGGHHHHSHHH-----H-S----SS-EEEETTEE--TTSBTTTSS--------SEEEEEEEEE--TT--E
T ss_pred EEEecCCcHHHHHHHHHHh-----hCCCc--CCCeEEeccceecCCccHHHhhcc-cc---CEEEEEEEEEecCCCcc
Confidence 4667777888999988654 23333 455566677779999999999997 44 46777777777766554
No 141
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=30.22 E-value=1.3e+02 Score=19.51 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=27.9
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
++|.|++.-..|..+. +-+++--.|.-+++.|.++
T Consensus 16 ddI~itVl~i~gnqVk-iGi~APk~v~I~R~Eiy~~ 50 (73)
T COG1551 16 DDIEITVLSIKGNQVK-IGINAPKEVSIHREEIYQR 50 (73)
T ss_pred CCeEEEEEEEcCCeEE-EeecCChhhhHHHHHHHHH
Confidence 6789999999999998 8888777777777766543
No 142
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=29.05 E-value=92 Score=21.36 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=22.2
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHH
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKE 36 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~ 36 (118)
|.|+|...+|.+.. +++++..|+.+.=+
T Consensus 1 ~~V~fi~~~G~~~~-v~~~~G~tLl~a~~ 28 (117)
T PLN02593 1 ISVTFVDKDGEERT-VKAPVGMSLLEAAH 28 (117)
T ss_pred CEEEEEcCCCCEEE-EEECCCCcHHHHHH
Confidence 56778778898888 88899988887633
No 143
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=28.92 E-value=33 Score=20.02 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=13.3
Q ss_pred CCCcccCCCCCCCceEEEeCCeecC
Q 033465 42 WPKEKENGPRTVKDVKLISAGKILE 66 (118)
Q Consensus 42 wp~~~~~~p~~~~~~rLI~~Gk~L~ 66 (118)
+|.+|.. =..||.|.|+.|+
T Consensus 3 LP~~w~~-----l~F~~~~rg~~l~ 22 (54)
T PF03633_consen 3 LPKQWSS-----LSFRLRYRGHWLE 22 (54)
T ss_dssp --TT-SE-----EEEEEEETTEEEE
T ss_pred CCCccCE-----eEEEEEECCEEEE
Confidence 4666654 3789999999885
No 144
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=28.19 E-value=1.1e+02 Score=22.73 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=26.2
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHH
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKE 36 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~ 36 (118)
+.|+|+|...+|..+. +...-.+||.++=.
T Consensus 42 e~i~Itfv~~dG~~~~-i~g~vGdtlLd~ah 71 (159)
T KOG3309|consen 42 EDIKITFVDPDGEEIK-IKGKVGDTLLDAAH 71 (159)
T ss_pred ceEEEEEECCCCCEEE-eeeecchHHHHHHH
Confidence 4599999999999998 99999999998743
No 145
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=28.16 E-value=1.2e+02 Score=20.31 Aligned_cols=34 Identities=9% Similarity=0.297 Sum_probs=29.9
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
++.|++-+.+|.++. +++.-+++..+|=+.+..+
T Consensus 1 ~V~L~V~Lpdg~~i~-V~v~~s~~a~~Vleav~~k 34 (87)
T cd01777 1 DVELRIALPDKATVT-VRVRKNATTDQVYQALVAK 34 (87)
T ss_pred CeEEEEEccCCCEEE-EEEEEcccHHHHHHHHHHH
Confidence 468889999999999 9999999999999988754
No 146
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=26.67 E-value=80 Score=22.32 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=30.4
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~ 74 (118)
+-|+.+.||+++...|..+. ..+++++=|..++-++.-+.++++.
T Consensus 45 llVP~d~tV~qF~~iIRkrl-------~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQAL-------GTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHc-------CCChhHEEEEECCccCCccchHHHH
Confidence 36999999999999997652 2334666444555455666677655
No 147
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=26.38 E-value=2.6e+02 Score=23.04 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=31.7
Q ss_pred CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+.+ ++++..||.+|-+.+. ++ ...+-+.++|+++.- .--.++-+++||
T Consensus 5 VNGk~~---el~e~~TL~dLL~~L~---------i~--~~~VAVeVNgeIVpr-~~w~~t~LkeGD 55 (326)
T PRK11840 5 LNGEPR---QVPAGLTIAALLAELG---------LA--PKKVAVERNLEIVPR-SEYGQVALEEGD 55 (326)
T ss_pred ECCEEE---ecCCCCcHHHHHHHcC---------CC--CCeEEEEECCEECCH-HHcCccccCCCC
Confidence 467654 6678889998877662 32 367777777777741 122334456665
No 148
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=24.77 E-value=1.6e+02 Score=17.37 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=32.2
Q ss_pred CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+.+ ++++..||++|-+.+. ++ ..+.+-++|+++.... -.+.-+++||
T Consensus 5 vNg~~~---~~~~~~tl~~ll~~l~---------~~---~~~~v~vN~~~v~~~~-~~~~~L~~gD 54 (65)
T PRK06944 5 LNQQTL---SLPDGATVADALAAYG---------AR---PPFAVAVNGDFVARTQ-HAARALAAGD 54 (65)
T ss_pred ECCEEE---ECCCCCcHHHHHHhhC---------CC---CCeEEEECCEEcCchh-cccccCCCCC
Confidence 467654 6678899999988872 21 2467888999885321 1223367776
No 149
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=23.98 E-value=1.7e+02 Score=17.45 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=33.0
Q ss_pred CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+.++ + + ..|+.+|.+.+. .+ ...+.+-.+|+++. .....+..+.+||
T Consensus 5 ~Ng~~~~-~--~-~~tl~~Ll~~l~---------~~--~~~vavavN~~iv~-~~~~~~~~L~dgD 54 (65)
T PRK06488 5 VNGETLQ-T--E-ATTLALLLAELD---------YE--GNWLATAVNGELVH-KEARAQFVLHEGD 54 (65)
T ss_pred ECCeEEE-c--C-cCcHHHHHHHcC---------CC--CCeEEEEECCEEcC-HHHcCccccCCCC
Confidence 4777665 4 4 469999988772 22 35677889999886 2233445678776
No 150
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=23.87 E-value=2.1e+02 Score=18.55 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=37.6
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+.+++ +++|+.+ ++++..||.+|=+.+ +++ ...+-+-++|.++. ...-++.-+++||
T Consensus 17 ~~m~I-~VNG~~~---~~~~~~tl~~LL~~l---------~~~--~~~vAVevNg~iVp-r~~w~~t~L~egD 73 (84)
T PRK06083 17 VLITI-SINDQSI---QVDISSSLAQIIAQL---------SLP--ELGCVFAINNQVVP-RSEWQSTVLSSGD 73 (84)
T ss_pred ceEEE-EECCeEE---EcCCCCcHHHHHHHc---------CCC--CceEEEEECCEEeC-HHHcCcccCCCCC
Confidence 34444 3478664 667888999887765 133 36677788999884 3345556688887
No 151
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=23.78 E-value=1.6e+02 Score=17.59 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=22.7
Q ss_pred EEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
|++.+.+|... +++...|+.++=..|...
T Consensus 1 I~v~lpdG~~~---~~~~g~T~~d~A~~I~~~ 29 (60)
T PF02824_consen 1 IRVYLPDGSIK---ELPEGSTVLDVAYSIHSS 29 (60)
T ss_dssp EEEEETTSCEE---EEETTBBHHHHHHHHSHH
T ss_pred CEEECCCCCee---eCCCCCCHHHHHHHHCHH
Confidence 45667889775 578899999999999643
No 152
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=21.93 E-value=1.5e+02 Score=19.86 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=25.3
Q ss_pred EEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 12 FRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 12 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
++...|.+.. +.|+.+.|-.+|+.++.+.
T Consensus 17 l~Y~GG~tr~-i~V~r~~s~~el~~kl~~~ 45 (97)
T cd06410 17 LRYVGGETRI-VSVDRSISFKELVSKLSEL 45 (97)
T ss_pred EEEcCCceEE-EEEcCCCCHHHHHHHHHHH
Confidence 4668888888 9999999999999999765
No 153
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=21.37 E-value=1.5e+02 Score=18.64 Aligned_cols=22 Identities=27% Similarity=0.293 Sum_probs=18.1
Q ss_pred eeEEEEEeCCCceeeeeecCCcc
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAAT 29 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~ 29 (118)
...+.++..+|+.++ +.+||.+
T Consensus 55 ~yev~~~~~dG~~~e-v~vD~~t 76 (83)
T PF13670_consen 55 CYEVEARDKDGKKVE-VYVDPAT 76 (83)
T ss_pred EEEEEEEECCCCEEE-EEEcCCC
Confidence 367778889999999 9999874
No 154
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=20.55 E-value=1.4e+02 Score=24.06 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.8
Q ss_pred eecCCcccHHHHHHHhhhhC---CCccc-----CCCCCCCceEEEeCCeecCCCCcccccC
Q 033465 23 KSFPAATSVATLKESVLSQW---PKEKE-----NGPRTVKDVKLISAGKILENNRTLGECR 75 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~w---p~~~~-----~~p~~~~~~rLI~~Gk~L~D~~tL~~~~ 75 (118)
|....-.-|.-|++.|.++. |.... ..+...+.+-|.|.|+.|+.+=||+..+
T Consensus 252 L~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr 312 (331)
T PF11816_consen 252 LNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVR 312 (331)
T ss_pred ecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHH
Confidence 44555567888888888876 22221 1112368999999999999999999876
No 155
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=20.13 E-value=2.4e+02 Score=17.68 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.5
Q ss_pred CceeeeeecCCcccHHHHHHHhhhh
Q 033465 17 GSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 17 g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
+.... +.+.+++|+.+|=+.+.++
T Consensus 15 ~~~kt-i~v~~~tTa~~Vi~~~l~k 38 (90)
T smart00314 15 GTYKT-LRVSSRTTARDVIQQLLEK 38 (90)
T ss_pred CcEEE-EEECCCCCHHHHHHHHHHH
Confidence 66666 9999999999999988765
Done!