Query 033465
Match_columns 118
No_of_seqs 106 out of 774
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 03:26:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 2.7E-35 9.1E-40 208.1 12.1 116 2-118 11-126 (126)
2 2gow_A HCG-1 protein, ubiquiti 100.0 4.2E-31 1.4E-35 186.2 11.0 110 3-118 13-125 (125)
3 1wgh_A Ubiquitin-like 3, HCG-1 99.9 2.1E-26 7.1E-31 160.4 12.0 96 5-105 14-110 (116)
4 3phx_B Ubiquitin-like protein 99.8 8.7E-20 3E-24 116.6 9.0 77 6-96 3-79 (79)
5 3plu_A Ubiquitin-like modifier 99.8 6.6E-20 2.3E-24 123.2 7.7 76 2-91 16-91 (93)
6 4dwf_A HLA-B-associated transc 99.8 2E-19 6.8E-24 117.6 9.3 82 3-99 1-82 (90)
7 1wgd_A Homocysteine-responsive 99.8 2.1E-19 7.1E-24 118.8 9.4 86 2-99 2-91 (93)
8 3dbh_I NEDD8; cell cycle, acti 99.8 2.4E-19 8E-24 116.2 8.4 81 3-97 8-88 (88)
9 4eew_A Large proline-rich prot 99.8 2.9E-19 9.9E-24 116.4 8.6 77 2-93 12-88 (88)
10 4fbj_B NEDD8; effector-HOST ta 99.8 2.7E-19 9.2E-24 117.4 8.4 79 8-100 1-79 (88)
11 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 6.8E-19 2.3E-23 114.1 9.4 82 3-98 3-84 (87)
12 1wy8_A NP95-like ring finger p 99.8 7.9E-19 2.7E-23 114.4 9.3 84 2-99 2-87 (89)
13 2kdb_A Homocysteine-responsive 99.8 4.6E-19 1.6E-23 119.9 7.8 77 3-91 19-99 (99)
14 2lxa_A Ubiquitin-like protein 99.8 4.1E-19 1.4E-23 117.6 6.9 75 8-95 2-79 (87)
15 1uh6_A Ubiquitin-like 5; beta- 99.8 4.4E-19 1.5E-23 120.6 7.2 76 3-92 24-99 (100)
16 4hcn_B Polyubiquitin, ubiquiti 99.8 9.1E-19 3.1E-23 116.9 8.6 80 4-97 19-98 (98)
17 3v6c_B Ubiquitin; structural g 99.8 1.2E-18 4.1E-23 114.5 9.0 78 4-95 14-91 (91)
18 2dzi_A Ubiquitin-like protein 99.8 1.2E-18 4E-23 111.1 8.6 80 2-95 2-81 (81)
19 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 1.3E-18 4.5E-23 114.8 9.1 79 8-100 2-80 (96)
20 2uyz_B Small ubiquitin-related 99.8 7.1E-19 2.4E-23 112.3 7.3 78 6-97 2-79 (79)
21 2wyq_A HHR23A, UV excision rep 99.8 2.3E-18 7.8E-23 111.0 9.2 82 4-96 2-83 (85)
22 2hj8_A Interferon-induced 17 k 99.8 9E-19 3.1E-23 114.8 7.3 79 7-99 4-82 (88)
23 4a20_A Ubiquitin-like protein 99.8 2E-18 6.9E-23 116.6 9.2 79 4-95 16-97 (98)
24 1ndd_A NEDD8, protein (ubiquit 99.8 2.5E-18 8.5E-23 107.9 8.8 76 8-97 1-76 (76)
25 3n3k_B Ubiquitin; hydrolase, p 99.8 1.5E-18 5.2E-23 111.5 7.9 80 6-99 2-81 (85)
26 2kan_A Uncharacterized protein 99.8 2.4E-18 8.3E-23 114.6 9.0 79 5-98 13-92 (94)
27 1wyw_B Ubiquitin-like protein 99.8 1.2E-18 4E-23 116.4 7.3 78 6-97 20-97 (97)
28 2kk8_A Uncharacterized protein 99.8 1.5E-18 5E-23 113.5 7.4 75 6-94 9-84 (84)
29 3mtn_B UBA80, ubcep1, ubiquiti 99.8 2.9E-18 1E-22 110.0 8.6 79 6-98 2-80 (85)
30 2faz_A Ubiquitin-like containi 99.8 4E-18 1.4E-22 108.4 8.8 75 7-95 2-78 (78)
31 3a9j_A Ubiquitin; protein comp 99.8 6.1E-18 2.1E-22 106.1 9.0 76 8-97 1-76 (76)
32 1wia_A Hypothetical ubiquitin- 99.7 1.1E-17 3.7E-22 110.7 10.3 81 2-99 2-83 (95)
33 3m62_B UV excision repair prot 99.7 3.8E-18 1.3E-22 115.8 8.0 76 8-97 2-77 (106)
34 1v2y_A 3300001G02RIK protein; 99.7 1.5E-18 5.2E-23 118.7 5.9 84 2-97 2-99 (105)
35 1yqb_A Ubiquilin 3; structural 99.7 5E-18 1.7E-22 114.2 8.0 83 1-98 16-98 (100)
36 1sif_A Ubiquitin; hydrophobic 99.7 5.8E-18 2E-22 111.0 8.0 78 7-98 9-86 (88)
37 1j8c_A Ubiquitin-like protein 99.7 1E-17 3.5E-22 117.1 9.7 84 2-100 27-110 (125)
38 1wju_A NEDD8 ultimate buster-1 99.7 3.5E-18 1.2E-22 116.1 6.9 75 9-98 17-95 (100)
39 2daf_A FLJ35834 protein; hypot 99.7 4.2E-18 1.4E-22 118.7 7.4 82 4-99 12-94 (118)
40 1uel_A HHR23B, UV excision rep 99.7 1.4E-17 4.8E-22 110.5 9.4 79 8-97 1-79 (95)
41 3vdz_A Ubiquitin-40S ribosomal 99.7 1.2E-17 4.2E-22 114.1 9.2 78 6-97 34-111 (111)
42 1wx8_A Riken cDNA 4931431F19; 99.7 4.7E-18 1.6E-22 112.5 6.5 80 4-98 14-93 (96)
43 2bwf_A Ubiquitin-like protein 99.7 2E-17 6.9E-22 104.4 8.7 74 6-94 3-76 (77)
44 2l7r_A Ubiquitin-like protein 99.7 9.8E-18 3.4E-22 111.2 7.2 76 6-97 18-93 (93)
45 3rt3_B Ubiquitin-like protein 99.7 2.6E-17 8.9E-22 117.3 9.2 80 5-98 79-158 (159)
46 1yx5_B Ubiquitin; proteasome, 99.7 4.2E-17 1.4E-21 108.4 9.4 78 8-99 1-78 (98)
47 1we6_A Splicing factor, putati 99.7 2E-17 6.7E-22 112.8 7.9 82 4-99 24-109 (111)
48 1ttn_A DC-UBP, dendritic cell- 99.7 2.6E-17 9E-22 111.4 8.4 78 6-97 22-99 (106)
49 2klc_A Ubiquilin-1; ubiquitin- 99.7 3.4E-17 1.2E-21 110.2 8.9 78 4-96 22-99 (101)
50 1wx7_A Ubiquilin 3; ubiquitin- 99.7 2.8E-17 9.5E-22 111.1 8.4 82 4-100 14-95 (106)
51 3l0w_B Monoubiquitinated proli 99.7 3.7E-17 1.3E-21 119.4 9.5 79 8-100 1-79 (169)
52 2fnj_B Transcription elongatio 99.7 2E-17 7E-22 115.3 7.4 81 7-97 2-83 (118)
53 4ajy_B Transcription elongatio 99.7 2E-17 6.9E-22 115.4 7.3 79 7-95 2-82 (118)
54 1we7_A SF3A1 protein; structur 99.7 1.9E-17 6.4E-22 113.6 6.9 83 4-100 22-114 (115)
55 2ojr_A Ubiquitin; lanthide-bin 99.7 8.8E-17 3E-21 109.6 9.5 78 6-97 34-111 (111)
56 3b1l_X E3 ubiquitin-protein li 99.5 1.2E-18 4E-23 110.3 0.0 75 8-96 1-75 (76)
57 1v5o_A 1700011N24RIK protein; 99.7 6.3E-17 2.2E-21 108.9 8.2 84 2-99 2-90 (102)
58 3m63_B Ubiquitin domain-contai 99.7 2.6E-17 8.9E-22 111.0 6.2 75 5-94 26-100 (101)
59 2kdi_A Ubiquitin, vacuolar pro 99.7 9.3E-17 3.2E-21 110.4 9.1 78 7-98 9-86 (114)
60 1x1m_A Ubiquitin-like protein 99.7 1.9E-16 6.6E-21 107.4 8.4 80 6-97 11-103 (107)
61 3u30_A Ubiquitin, linear DI-ub 99.7 2.7E-16 9.3E-21 113.7 9.2 81 4-98 17-97 (172)
62 1wxv_A BAG-family molecular ch 99.7 3.1E-16 1.1E-20 103.1 8.5 81 2-97 2-88 (92)
63 3q3f_A Ribonuclease/ubiquitin 99.7 1.5E-16 5.1E-21 118.6 7.8 79 7-99 105-183 (189)
64 1wgg_A Ubiquitin carboxyl-term 99.7 1.5E-16 5.1E-21 106.4 7.0 78 2-95 2-80 (96)
65 1v5t_A 8430435I17RIK protein; 99.7 3E-16 1E-20 103.4 7.6 79 2-95 2-84 (90)
66 3u5e_m 60S ribosomal protein L 99.7 8.4E-18 2.9E-22 117.4 0.0 78 8-99 1-78 (128)
67 3u5c_f 40S ribosomal protein S 99.6 1.7E-17 5.7E-22 119.9 0.8 79 8-100 1-79 (152)
68 3u30_A Ubiquitin, linear DI-ub 99.6 3.6E-16 1.2E-20 113.1 7.6 78 6-97 95-172 (172)
69 3b08_A Polyubiquitin-C, ubiqui 99.6 9.7E-16 3.3E-20 107.3 9.4 78 6-97 75-152 (152)
70 4dbg_A Ranbp-type and C3HC4-ty 99.6 7.4E-16 2.5E-20 105.5 8.4 75 7-95 24-101 (105)
71 3rt3_B Ubiquitin-like protein 99.6 1.3E-15 4.6E-20 108.4 8.8 76 8-97 3-81 (159)
72 2kd0_A LRR repeats and ubiquit 99.6 1.3E-15 4.3E-20 99.5 8.0 70 11-94 15-84 (85)
73 1oqy_A HHR23A, UV excision rep 99.6 2.3E-15 8E-20 121.8 9.5 84 5-98 5-88 (368)
74 3b08_A Polyubiquitin-C, ubiqui 99.6 3.7E-15 1.3E-19 104.3 9.0 76 8-97 1-76 (152)
75 4b6w_A Tubulin-specific chaper 99.6 3.1E-15 1E-19 98.5 7.2 75 7-95 2-85 (86)
76 1v86_A DNA segment, CHR 7, way 99.6 1.5E-15 5E-20 101.2 5.2 76 4-95 14-89 (95)
77 2dzj_A Synaptic glycoprotein S 99.6 1.3E-14 4.6E-19 95.7 7.8 72 7-90 10-85 (88)
78 2xzm_9 RPS31E; ribosome, trans 99.6 3.5E-16 1.2E-20 116.8 0.0 73 8-99 1-73 (189)
79 3ai5_A Yeast enhanced green fl 99.6 9.7E-15 3.3E-19 115.8 8.3 78 4-95 230-307 (307)
80 2dzm_A FAS-associated factor 1 99.5 7.4E-15 2.5E-19 99.5 6.5 78 7-99 8-87 (100)
81 2kjr_A CG11242; UBL, ubiquitin 99.5 1E-14 3.5E-19 97.7 7.0 74 5-92 13-94 (95)
82 2kj6_A Tubulin folding cofacto 99.5 1.8E-14 6.3E-19 96.9 7.7 78 2-93 9-95 (97)
83 2io1_B Small ubiquitin-related 99.5 3.3E-14 1.1E-18 95.0 7.3 82 3-98 3-84 (94)
84 1v6e_A Cytoskeleton-associated 99.5 1E-13 3.4E-18 92.0 8.0 77 3-93 3-87 (95)
85 1wf9_A NPL4 family protein; be 99.5 5E-14 1.7E-18 95.6 6.3 78 2-94 2-95 (107)
86 2io0_B Small ubiquitin-related 99.4 4.6E-13 1.6E-17 89.0 8.4 79 6-98 4-82 (91)
87 1t0y_A Tubulin folding cofacto 99.4 6.1E-13 2.1E-17 92.2 9.1 76 7-96 6-89 (122)
88 2d07_B Ubiquitin-like protein 99.4 1.4E-12 4.7E-17 86.8 8.0 79 5-97 15-93 (93)
89 1wz0_A Ubiquitin-like protein 99.4 1.9E-12 6.5E-17 88.1 7.6 80 5-98 22-101 (104)
90 1wm3_A Ubiquitin-like protein 99.3 3.7E-12 1.3E-16 80.7 7.3 70 8-91 2-71 (72)
91 3shq_A UBLCP1; phosphatase, hy 99.3 1E-12 3.4E-17 104.4 5.7 76 5-95 3-81 (320)
92 3a4r_A Nfatc2-interacting prot 99.3 6.8E-12 2.3E-16 81.0 7.9 74 3-90 3-77 (79)
93 2kzr_A Ubiquitin thioesterase 99.3 2.7E-12 9.2E-17 83.5 5.4 72 8-94 1-78 (86)
94 2eke_C Ubiquitin-like protein 99.3 7.8E-12 2.7E-16 85.4 7.6 78 5-97 29-106 (106)
95 2k8h_A Small ubiquitin protein 99.3 4.2E-12 1.4E-16 87.2 5.9 79 6-98 25-103 (110)
96 1wjn_A Tubulin-folding protein 99.0 2.9E-09 9.9E-14 70.4 9.2 77 4-94 6-93 (97)
97 3kyd_D Small ubiquitin-related 98.9 6.8E-09 2.3E-13 71.8 8.6 75 6-94 39-113 (115)
98 3pge_A SUMO-modified prolifera 98.8 1.6E-08 5.5E-13 75.8 8.2 81 5-100 27-107 (200)
99 3tix_A Ubiquitin-like protein 98.7 3E-08 1E-12 74.4 6.5 81 5-100 55-135 (207)
100 3v7o_A Minor nucleoprotein VP3 98.4 3.4E-08 1.2E-12 74.9 0.0 80 5-99 19-98 (227)
101 4efo_A Serine/threonine-protei 98.3 1.4E-06 4.8E-11 58.2 6.3 57 13-77 19-75 (94)
102 3uf8_A Ubiquitin-like protein 98.2 5E-06 1.7E-10 62.0 7.3 80 4-98 18-97 (209)
103 2jxx_A Nfatc2-interacting prot 98.1 2.2E-05 7.5E-10 52.5 8.6 69 4-80 22-91 (97)
104 3ix6_A TS, tsase, thymidylate 98.1 4.1E-07 1.4E-11 73.4 -0.0 82 4-100 18-99 (360)
105 2pjh_A Protein NPL4, nuclear p 98.1 3.2E-06 1.1E-10 54.4 4.0 65 7-80 4-73 (80)
106 3goe_A DNA repair protein RAD6 98.0 5.8E-05 2E-09 49.0 9.1 66 8-80 10-75 (82)
107 4da1_A Protein phosphatase 1K, 97.7 4E-06 1.4E-10 67.1 0.0 79 6-99 29-107 (389)
108 3qx1_A FAS-associated factor 1 97.7 0.00055 1.9E-08 43.8 9.6 67 4-79 4-75 (84)
109 2l76_A Nfatc2-interacting prot 97.6 0.0003 1E-08 47.0 7.4 67 5-80 19-85 (95)
110 2bps_A YUKD protein; ubiquitin 97.5 0.00027 9.4E-09 45.8 6.2 70 8-80 5-76 (81)
111 2dzk_A UBX domain-containing p 97.3 0.0021 7.2E-08 43.2 8.5 68 3-78 9-81 (109)
112 2cr5_A Reproduction 8; UBX dom 97.2 0.0039 1.3E-07 41.8 9.1 68 3-79 19-90 (109)
113 1s3s_G P47 protein; AAA ATPase 97.2 0.0023 7.9E-08 44.2 8.2 67 5-78 50-119 (127)
114 3ivf_A Talin-1; FERM domain, c 97.1 0.0034 1.2E-07 49.5 9.6 69 7-80 3-77 (371)
115 1wj4_A KIAA0794 protein; UBX d 96.9 0.0057 1.9E-07 42.1 8.3 67 4-79 40-111 (124)
116 2kc2_A Talin-1, F1; FERM, adhe 96.9 0.0017 5.8E-08 45.4 5.4 66 9-80 13-115 (128)
117 4e71_A Plexin-B2, MM1; transme 95.4 0.056 1.9E-06 36.8 6.6 78 7-92 11-109 (111)
118 2al3_A TUG long isoform; TUG U 95.1 0.14 4.9E-06 33.5 7.7 77 7-97 9-85 (90)
119 3h6n_A Plexin-D1; structural g 94.4 0.36 1.2E-05 33.5 8.7 70 17-94 16-105 (127)
120 2r2o_A Plexin-B1; effector dom 93.6 0.43 1.5E-05 33.6 7.9 69 19-95 42-130 (138)
121 1vjk_A Molybdopterin convertin 91.3 1.9 6.5E-05 27.6 8.8 56 19-80 28-87 (98)
122 2l32_A Small archaeal modifier 90.5 0.76 2.6E-05 28.5 5.6 50 8-69 1-50 (74)
123 2v1y_A Phosphatidylinositol-4, 88.9 0.67 2.3E-05 31.2 4.6 36 5-41 17-52 (108)
124 4e74_A Plexin-A4; RBD, structu 88.6 1.7 5.9E-05 29.6 6.6 64 23-93 31-114 (117)
125 1oey_A P67-PHOX, neutrophil cy 87.0 2 7E-05 27.5 5.9 48 6-63 4-51 (83)
126 1wgr_A Growth factor receptor- 86.0 1.8 6.1E-05 28.7 5.4 37 4-41 6-42 (100)
127 3po0_A Small archaeal modifier 85.7 4.6 0.00016 25.0 8.5 57 18-80 18-78 (89)
128 3kuz_A Plexin-C1; structural g 85.5 6.9 0.00023 27.0 8.3 59 19-79 40-118 (126)
129 3hm6_X Plexin-B1; structural g 85.3 4.5 0.00015 34.8 8.7 80 7-94 257-362 (644)
130 4a3p_A Ubiquitin carboxyl-term 84.4 8.6 0.00029 28.0 9.1 66 8-80 128-201 (217)
131 1wgk_A Riken cDNA 2900073H19 p 84.3 6 0.0002 26.3 7.5 40 6-46 10-60 (114)
132 3ig3_A Plxna3 protein; plexin 83.8 6.4 0.00022 33.8 9.0 80 7-94 233-335 (627)
133 2y3a_A Phosphatidylinositol-4, 82.4 6.8 0.00023 35.6 9.1 85 3-95 47-138 (1092)
134 1ef1_A Moesin; membrane, FERM 81.1 14 0.00049 27.4 9.4 79 7-97 1-84 (294)
135 2qjl_A URM1, ubiquitin-related 79.1 9.9 0.00034 24.1 8.4 27 18-45 20-48 (99)
136 1ryj_A Unknown; beta/alpha pro 78.6 8.3 0.00028 23.0 9.4 55 8-80 5-59 (70)
137 1h4r_A Merlin; FERM, neurofibr 78.0 16 0.00055 27.4 8.9 81 5-97 20-104 (314)
138 3rpf_C Molybdopterin convertin 77.2 9.4 0.00032 22.8 8.1 62 9-80 2-63 (74)
139 1fm0_D Molybdopterin convertin 75.4 6.4 0.00022 23.6 5.0 50 23-80 21-70 (81)
140 3jyu_A Ubiquitin carboxyl-term 74.9 22 0.00076 26.0 10.6 65 8-79 140-212 (231)
141 2q5w_D Molybdopterin convertin 74.5 5.6 0.00019 23.8 4.4 50 19-80 17-66 (77)
142 2i1j_A Moesin; FERM, coiled-co 72.7 23 0.00079 29.6 9.1 81 6-98 3-88 (575)
143 2c7h_A RBBP6, retinoblastoma-b 72.0 4.6 0.00016 26.0 3.7 32 10-41 9-41 (86)
144 3qij_A Protein 4.1; cytoskelet 70.2 5.9 0.0002 30.0 4.6 77 7-96 17-98 (296)
145 3dwg_C 9.5 kDa culture filtrat 70.1 17 0.00057 22.5 8.6 61 17-80 16-82 (93)
146 1tyg_B YJBS; alpha beta barrel 66.3 22 0.00075 22.5 6.7 51 15-80 25-76 (87)
147 3ivf_A Talin-1; FERM domain, c 65.1 30 0.001 26.6 7.9 65 6-77 84-157 (371)
148 2daj_A KIAA0977 protein, COBL- 64.3 5.4 0.00018 26.0 2.8 67 4-78 7-76 (91)
149 1rws_A Hypothetical protein PF 64.2 5.6 0.00019 24.2 2.8 42 23-80 25-66 (77)
150 3ge3_C Toluene-4-monooxygenase 60.5 30 0.001 22.1 9.4 56 23-80 19-76 (84)
151 3hk0_A Growth factor receptor- 60.0 14 0.00046 28.0 4.9 34 6-40 7-40 (256)
152 1ip9_A BEM1 protein; ubiquitin 57.6 23 0.00079 22.7 4.9 34 6-41 11-44 (85)
153 4gmv_A RAS-associated and plec 52.5 24 0.00082 27.0 5.2 34 6-40 30-63 (281)
154 3au4_A Myosin-X; protein-prote 51.9 20 0.00068 29.3 4.9 35 6-41 215-249 (555)
155 1y8x_B Ubiquitin-activating en 49.8 16 0.00053 23.8 3.2 59 19-80 6-77 (98)
156 1f0z_A THis protein; ubiquitin 48.8 37 0.0013 19.6 4.7 52 14-80 4-55 (66)
157 4eut_A Serine/threonine-protei 48.5 85 0.0029 23.7 9.5 46 16-69 320-366 (396)
158 2inc_C TOUB protein; DIIRON, 4 47.2 53 0.0018 20.9 10.4 57 23-80 17-75 (83)
159 3hhm_A Phosphatidylinositol-4, 47.1 19 0.00064 32.8 4.3 81 7-97 42-131 (1091)
160 2bt6_A Adrenodoxin 1; rutheniu 45.9 24 0.00084 22.3 3.7 29 5-34 4-32 (108)
161 3lxf_A Ferredoxin; iron, iron- 45.8 26 0.00089 22.3 3.9 26 9-35 2-27 (104)
162 3pvl_A Myosin VIIA isoform 1; 44.1 30 0.001 29.4 4.9 35 6-41 262-296 (655)
163 4dxa_B KREV interaction trappe 43.7 16 0.00056 27.7 3.0 33 5-38 3-37 (322)
164 1vd2_A Protein kinase C, IOTA 43.1 62 0.0021 20.5 6.5 50 5-62 4-53 (89)
165 2kl0_A Putative thiamin biosyn 43.0 53 0.0018 19.7 5.1 50 15-80 5-54 (73)
166 2wlb_A ETP1-FD, electron trans 42.1 38 0.0013 21.2 4.2 30 7-37 3-32 (103)
167 3eud_A Protein SHQ1; CS domain 40.3 32 0.0011 23.2 3.7 38 52-94 59-96 (115)
168 2kmm_A Guanosine-3',5'-BIS(dip 39.9 39 0.0013 19.5 3.8 28 9-39 2-29 (73)
169 1q1o_A Cell division control p 39.5 70 0.0024 20.8 5.2 35 7-42 5-46 (98)
170 2k9x_A Tburm1, uncharacterized 39.3 20 0.00069 23.6 2.5 29 17-46 20-52 (110)
171 1jq4_A Methane monooxygenase c 37.6 45 0.0015 20.6 4.0 30 7-37 4-33 (98)
172 3qa8_A MGC80376 protein; kinas 36.4 42 0.0014 28.6 4.6 54 14-75 318-372 (676)
173 2dhz_A RAP guanine nucleotide 36.1 98 0.0034 20.8 7.0 81 4-93 6-92 (120)
174 2juo_A GA-binding protein alph 35.7 85 0.0029 20.1 5.0 64 23-97 7-70 (89)
175 1n62_A Carbon monoxide dehydro 34.1 37 0.0013 23.9 3.4 27 9-37 5-31 (166)
176 2y5c_A Adrenodoxin-like protei 34.0 51 0.0017 20.8 3.8 28 7-35 5-32 (109)
177 1ffv_A CUTS, iron-sulfur prote 33.6 38 0.0013 23.7 3.4 27 9-37 5-31 (163)
178 1uwm_A Ferredoxin VI, FDVI; el 33.3 55 0.0019 20.5 3.9 25 9-34 2-26 (106)
179 2cu3_A Unknown function protei 32.0 74 0.0025 18.2 6.5 51 14-80 3-53 (64)
180 1xlq_A Putidaredoxin, PDX; [2F 32.0 58 0.002 20.3 3.9 27 9-36 2-28 (106)
181 3hrd_D Nicotinate dehydrogenas 31.9 45 0.0015 23.4 3.5 26 8-35 4-29 (160)
182 3tca_A Amyloid beta A4 precurs 31.6 68 0.0023 23.2 4.6 34 7-41 34-67 (291)
183 2k5p_A THis protein, thiamine- 31.4 75 0.0026 19.3 4.2 52 15-80 5-58 (78)
184 2ylm_A Ubiquitin carboxyl-term 31.0 96 0.0033 25.5 5.9 62 7-74 339-408 (530)
185 1rm6_C 4-hydroxybenzoyl-COA re 30.7 41 0.0014 23.4 3.1 28 9-38 4-31 (161)
186 4a6q_A Histone deacetylase com 30.2 51 0.0017 23.0 3.5 60 27-94 62-139 (143)
187 2kvr_A Ubiquitin carboxyl-term 29.6 42 0.0015 22.6 3.0 32 23-61 60-91 (130)
188 3hui_A Ferredoxin; cytochrome 28.3 87 0.003 20.7 4.4 27 7-34 21-47 (126)
189 2cu1_A Mitogen-activated prote 28.1 86 0.003 20.7 4.1 47 3-61 4-50 (103)
190 1t3q_A Quinoline 2-oxidoreduct 26.8 61 0.0021 22.5 3.5 28 8-37 10-37 (168)
191 1frr_A Ferredoxin I; electron 25.4 79 0.0027 19.1 3.5 27 9-37 3-29 (95)
192 3onh_A Ubiquitin-activating en 24.7 92 0.0031 21.2 3.9 56 23-79 10-71 (127)
193 2g1e_A Hypothetical protein TA 24.3 1.2E+02 0.004 18.0 7.2 54 23-80 19-79 (90)
194 2vq5_A S-norcoclaurine synthas 23.8 29 0.00098 25.2 1.3 20 54-73 3-22 (201)
195 2nnz_A Hypothetical protein; b 22.3 63 0.0021 22.5 2.8 33 4-38 26-61 (153)
196 2c60_A Human mitogen-activated 21.2 1.4E+02 0.0047 19.8 4.1 36 4-41 28-63 (111)
197 1b9r_A Protein (terpredoxin); 21.2 49 0.0017 20.7 1.9 26 9-35 2-27 (105)
198 1awd_A Ferredoxin; electron tr 20.9 1E+02 0.0035 18.7 3.4 27 9-37 2-28 (94)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=100.00 E-value=2.7e-35 Score=208.10 Aligned_cols=116 Identities=66% Similarity=1.107 Sum_probs=92.5
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~ 81 (118)
|.+++.++|+||+.+|+++.++++++++||++||++|+++||++++++|.++++|||||+||+|+|+.||++|+|+.+++
T Consensus 11 ~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~ 90 (126)
T 1se9_A 11 AEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNL 90 (126)
T ss_dssp CSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSC
T ss_pred hhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCc
Confidence 55778999999999999995599999999999999999999999999986669999999999999999999999999887
Q ss_pred CCCeEEEEEEeCCCCchhhhhhhccCCCCCCeEEeeC
Q 033465 82 PGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118 (118)
Q Consensus 82 p~~~~tmhlv~~~~~~~~~~~~~~~~~~~~~c~C~i~ 118 (118)
|+.++||||+++++++.++ |....+.+.++|+|+||
T Consensus 91 ~~~v~tmhlVlrl~g~~kk-kk~~~~pkk~~C~C~Il 126 (126)
T 1se9_A 91 AGAVTTMHVIIQAPVTEKE-KKPKGDPKMNKCVCSVM 126 (126)
T ss_dssp TTCCEEEEEEECCCSSCCC-C----------------
T ss_pred cCCcEEEEEEeccCCcccc-ccCCCCCCCCCceEEeC
Confidence 7778999999999998777 66677777899999997
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.97 E-value=4.2e-31 Score=186.21 Aligned_cols=110 Identities=25% Similarity=0.481 Sum_probs=97.9
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcc-cCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEK-ENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~-~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~ 81 (118)
...+.|.|+||+.+|++++ ++|++++||++||++|+++||.+| +++|.++++|||||+||+|+|++||++|+|+.++
T Consensus 13 ~~~~~m~I~vktl~G~~~~-lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~- 90 (125)
T 2gow_A 13 VPADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK- 90 (125)
T ss_dssp CCTTCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS-
T ss_pred CCCCeEEEEEEeCCCCEEE-EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC-
Confidence 4556799999999999998 999999999999999999999995 7786567999999999999999999999999774
Q ss_pred CCCeEEEEEEeCCCCchhhh--hhhccCCCCCCeEEeeC
Q 033465 82 PGGVTTMHVVVQPPSTEKAE--KKAASQPKQNKCVCVIL 118 (118)
Q Consensus 82 p~~~~tmhlv~~~~~~~~~~--~~~~~~~~~~~c~C~i~ 118 (118)
.+||||++++.++.+++ +....+...++| |+||
T Consensus 91 ---~~tlhlv~r~~~~~~~~~~~~~~~~~~~~~C-C~il 125 (125)
T 2gow_A 91 ---TTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 125 (125)
T ss_dssp ---EEEEEEEECSCCSSSSSCCCCCCCSTTCCCC-CCCC
T ss_pred ---ceEEEEEecCCCCccccccccccCCCCCCCc-cEeC
Confidence 57999999999988764 566667778999 9997
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.94 E-value=2.1e-26 Score=160.39 Aligned_cols=96 Identities=24% Similarity=0.415 Sum_probs=84.9
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcc-cCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEK-ENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~-~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
.+.|+|+||+.+|++++ ++|++++||++||++|+++||.+| +++|.++++|||||+||+|+|+.||++|+|+.++
T Consensus 14 ~~~m~I~vKtl~G~t~~-lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~--- 89 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK--- 89 (116)
T ss_dssp SSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC---
T ss_pred CCeEEEEEEeCCCCEEE-EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC---
Confidence 45699999999999998 999999999999999999999995 5665457999999999999999999999998764
Q ss_pred CeEEEEEEeCCCCchhhhhhhc
Q 033465 84 GVTTMHVVVQPPSTEKAEKKAA 105 (118)
Q Consensus 84 ~~~tmhlv~~~~~~~~~~~~~~ 105 (118)
.+||||++++.++.+++..++
T Consensus 90 -~~tlhLvlr~~~~~~~~~~~~ 110 (116)
T 1wgh_A 90 -TTVMHLVARETLPEPNSQGQR 110 (116)
T ss_dssp -EEEEEEEECSSCSSSCCSSCC
T ss_pred -ceEEEEEccCCCCCCCccccc
Confidence 579999999999988754443
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.81 E-value=8.7e-20 Score=116.59 Aligned_cols=77 Identities=25% Similarity=0.205 Sum_probs=69.4
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
+.++|+|++.+|+++. +++++++||++||++|.+. .++| +++|||+|+||.|+|+.+|++|+|.++
T Consensus 3 ~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~------ 68 (79)
T 3phx_B 3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------ 68 (79)
T ss_dssp CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTCCTT------
T ss_pred CCEEEEEEeCCCCEEE-EEECCcChHHHHHHHHHhh-----cCCC--HHHEEEEECCEECCCCCcHHHCCCCCC------
Confidence 5689999999999999 9999999999999999644 5677 599999999999999999999999987
Q ss_pred EEEEEEeCCCC
Q 033465 86 TTMHVVVQPPS 96 (118)
Q Consensus 86 ~tmhlv~~~~~ 96 (118)
.++|++++..|
T Consensus 69 ~~l~l~~rl~G 79 (79)
T 3phx_B 69 STVFMNLRLRG 79 (79)
T ss_dssp CEEEEEECCBC
T ss_pred CEEEEEEecCC
Confidence 48999998764
No 5
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.81 E-value=6.6e-20 Score=123.24 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=66.2
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~ 81 (118)
++.++-|+|+||+.+|+++. ++++|++||++||++|+ +.+++| +++|||||+||+|+|..||++|+|++|
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~-v~v~p~DTI~~LK~~I~-----~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dg-- 85 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVR-VKCLGEDSVGDFKKVLS-----LQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQ-- 85 (93)
T ss_dssp ----CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHH-----HHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTT--
T ss_pred CCCCceEEEEEECCCCCEEE-EEECCcCHHHHHHHHHH-----HHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCC--
Confidence 46778899999999999999 99999999999999995 457887 599999999999999999999999987
Q ss_pred CCCeEEEEEE
Q 033465 82 PGGVTTMHVV 91 (118)
Q Consensus 82 p~~~~tmhlv 91 (118)
.|+||.
T Consensus 86 ----stLhL~ 91 (93)
T 3plu_A 86 ----TNLELY 91 (93)
T ss_dssp ----CEEEEE
T ss_pred ----CEEEEE
Confidence 477875
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.80 E-value=2e-19 Score=117.63 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p 82 (118)
++++.++|+||+.+|+++. +++++++||.+||++|.+. .++| +++|||||+||.|+|+.+|++|+| ++
T Consensus 1 ~~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g--- 68 (90)
T 4dwf_A 1 GEPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GG--- 68 (90)
T ss_dssp CCCCEEEEEEEETTCCEEE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TT---
T ss_pred CCCcEEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCeECCCCCCHHHcCC-CC---
Confidence 4567899999999999998 9999999999999999654 4676 599999999999999999999999 66
Q ss_pred CCeEEEEEEeCCCCchh
Q 033465 83 GGVTTMHVVVQPPSTEK 99 (118)
Q Consensus 83 ~~~~tmhlv~~~~~~~~ 99 (118)
.++||+++.+++..
T Consensus 69 ---~~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 69 ---KVIHLVERAPPQTH 82 (90)
T ss_dssp ---EEEEEEECCCC---
T ss_pred ---cEEEEEecCCCCCC
Confidence 58999999876644
No 7
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=2.1e-19 Score=118.77 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=73.1
Q ss_pred CCCCceeEEEEEeCCCc--eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc--CCC
Q 033465 2 ASVQDQLEIKFRLTDGS--DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC--RSP 77 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~--~i~ 77 (118)
+++...|+|+|++.+|. ++. +++++++||++||++|++.+| .++| +++|||||+||+|+|+.+|++| +|.
T Consensus 2 ~~~~~~m~i~Vk~~~~~~~~~~-v~v~~~~TV~~lK~~I~~~~~---~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~ 75 (93)
T 1wgd_A 2 SSGSSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYP---ERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQE 75 (93)
T ss_dssp CCCSCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHST---TCCC--TTTCEEEETTEECCSSSCHHHHSCSSS
T ss_pred CCCCcEEEEEEEeCCCCeEEEE-EecCCCCcHHHHHHHHHHHhc---CCCC--hHHeEEEECCEECcCcCCHHHHhcCCC
Confidence 35567799999999988 666 777899999999999987643 2455 5999999999999999999999 998
Q ss_pred CCCCCCCeEEEEEEeCCCCchh
Q 033465 78 LCDIPGGVTTMHVVVQPPSTEK 99 (118)
Q Consensus 78 ~~~~p~~~~tmhlv~~~~~~~~ 99 (118)
++ .++||++++.++.+
T Consensus 76 ~~------~~i~lv~~~~gg~~ 91 (93)
T 1wgd_A 76 KR------HVLHLVCNVKSGPS 91 (93)
T ss_dssp CS------EEEEEECCCCCCCC
T ss_pred CC------CEEEEEeCCCCCCC
Confidence 76 68999999988753
No 8
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.80 E-value=2.4e-19 Score=116.17 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=72.1
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p 82 (118)
+....++|+|++.+|+++. +++++++||.+||++|.+. .++| +++|||+|.|+.|+|+.+|++|+|.++
T Consensus 8 ~~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~--- 76 (88)
T 3dbh_I 8 GSGGSMLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG--- 76 (88)
T ss_dssp SCCCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBGGGGTCCTT---
T ss_pred CCCCcEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCC---
Confidence 4556799999999999998 9999999999999999654 4666 599999999999999999999999987
Q ss_pred CCeEEEEEEeCCCCc
Q 033465 83 GGVTTMHVVVQPPST 97 (118)
Q Consensus 83 ~~~~tmhlv~~~~~~ 97 (118)
.++|++++..++
T Consensus 77 ---~~i~l~~rl~GG 88 (88)
T 3dbh_I 77 ---SVLHLVLRLRGG 88 (88)
T ss_dssp ---CEEEECCCCCCC
T ss_pred ---CEEEEEEeCCCC
Confidence 489999998875
No 9
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=116.40 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=66.9
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~ 81 (118)
...++.++|+|++.+|+++. +++++++||++||++|++. .++| +++|||||+||.|+|+.+|++|+| +|
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i-~g-- 80 (88)
T 4eew_A 12 VEEPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GG-- 80 (88)
T ss_dssp ---CCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TT--
T ss_pred ecCCCeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCCCcHHHcCC-CC--
Confidence 45567899999999999998 9999999999999999654 4676 599999999999999999999999 66
Q ss_pred CCCeEEEEEEeC
Q 033465 82 PGGVTTMHVVVQ 93 (118)
Q Consensus 82 p~~~~tmhlv~~ 93 (118)
.++||++|
T Consensus 81 ----~~i~lv~R 88 (88)
T 4eew_A 81 ----KVIHLVER 88 (88)
T ss_dssp ----EEEEEEEC
T ss_pred ----cEEEEEEC
Confidence 58999876
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.79 E-value=2.7e-19 Score=117.40 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=67.5
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++.+|+++. +++++++||++||++|++. .++| +++|||||+||.|+|+.+|++|+|.++ .+
T Consensus 1 M~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g------~~ 66 (88)
T 4fbj_B 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG------SV 66 (88)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTTTTTCCTT------CE
T ss_pred CEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hhHEEEEECCeECCCCCcHHHcCCCCC------CE
Confidence 57899999999998 9999999999999999654 5676 599999999999999999999999987 48
Q ss_pred EEEEeCCCCchhh
Q 033465 88 MHVVVQPPSTEKA 100 (118)
Q Consensus 88 mhlv~~~~~~~~~ 100 (118)
+||+++..++..-
T Consensus 67 l~l~~rl~Gg~~~ 79 (88)
T 4fbj_B 67 LHLVLALRGGGGL 79 (88)
T ss_dssp EEEECBCC-----
T ss_pred EEEEEECCCCCCC
Confidence 9999999998764
No 11
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=6.8e-19 Score=114.10 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=73.9
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p 82 (118)
++...++|+|++.+|+++. +++++++||.+||++|++. .++| +++|||+|.|+.|+|+.+|++|+|.++
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g--- 71 (87)
T 1wh3_A 3 SGSSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQ-----QGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDS--- 71 (87)
T ss_dssp CCSSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHH-----TCCC--TTTEEEEETTEECCSSSBHHHHTCCTT---
T ss_pred CCCCCEEEEEEcCCCCEEE-EEeCCCChHHHHHHHHHHH-----hCCC--hHHEEEEECCEEccCCCCHHHCCCCCC---
Confidence 5677899999999999998 9999999999999999754 4666 599999999999999999999999976
Q ss_pred CCeEEEEEEeCCCCch
Q 033465 83 GGVTTMHVVVQPPSTE 98 (118)
Q Consensus 83 ~~~~tmhlv~~~~~~~ 98 (118)
.++|++++..++.
T Consensus 72 ---~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 72 ---DTLILSKKKGSGP 84 (87)
T ss_dssp ---EEEEEEECSCCCS
T ss_pred ---CEEEEEEeccCCC
Confidence 5899999998875
No 12
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=7.9e-19 Score=114.37 Aligned_cols=84 Identities=24% Similarity=0.260 Sum_probs=73.9
Q ss_pred CCCCceeEEEEEeCCC-ceeeee-ecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465 2 ASVQDQLEIKFRLTDG-SDIGPK-SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g-~~~~~~-~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~ 79 (118)
++++..++|+|++.+| +++. + ++++++||.+||++|++. .++| +++|||+|.|+.|+|+.+|++|+|.++
T Consensus 2 ~~~~~~m~i~Vk~~~g~~~~~-l~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g 73 (89)
T 1wy8_A 2 SSGSSGMWIQVRTIDGSKTCT-IEDVSRKATIEELRERVWAL-----FDVR--PECQRLFYRGKQLENGYTLFDYDVGLN 73 (89)
T ss_dssp CCCSSCEEEEEEETTCSCEEE-EEEECTTCBHHHHHHHHHHH-----SCCC--TTTEEEEETTEECCSSSBHHHHTCCTT
T ss_pred CCCCCcEEEEEEECCCCceEE-EEecCCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCeECCCCCCHHHCCCCCC
Confidence 4667889999999999 6888 9 599999999999999654 5676 599999999999999999999999977
Q ss_pred CCCCCeEEEEEEeCCCCchh
Q 033465 80 DIPGGVTTMHVVVQPPSTEK 99 (118)
Q Consensus 80 ~~p~~~~tmhlv~~~~~~~~ 99 (118)
.++||++++.++.+
T Consensus 74 ------~~i~l~~~~~gG~~ 87 (89)
T 1wy8_A 74 ------DIIQLLVRPDSGPS 87 (89)
T ss_dssp ------CEEEEEECCCCSSC
T ss_pred ------CEEEEEEeCCCCCC
Confidence 48999999988754
No 13
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=119.86 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=63.5
Q ss_pred CCCceeEEEEEeCCCc--eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc--CCCC
Q 033465 3 SVQDQLEIKFRLTDGS--DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC--RSPL 78 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~--~i~~ 78 (118)
.....|+|+||+.+|+ ++. +++++++||++||++|+++|| ++| ++++|||||+||+|+|+.+|++| +|.+
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~-l~v~~~~TV~~LK~~I~~~~~----g~p-p~~~QrLIy~Gk~L~D~~tL~~y~~~I~~ 92 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQT-ISCFLNWTVGKLKTHLSNVYP----SKP-LTKDQRLVYSGRLLPDHLQLKDILRKQDE 92 (99)
T ss_dssp ----CEEEEEECTTSSSCCEE-EEECTTSBHHHHHHHHHHHST----TCC-CTTTCCEEETTEEECTTSBTHHHHTTTCS
T ss_pred CCCCeEEEEEEcCCCCEEEEE-EEcCCCCHHHHHHHHHHHHhc----CCC-ChhhEEEEECCEECCCCCCHHHHhcCCCC
Confidence 3456799999999998 567 888999999999999987653 344 25999999999999999999999 9997
Q ss_pred CCCCCCeEEEEEE
Q 033465 79 CDIPGGVTTMHVV 91 (118)
Q Consensus 79 ~~~p~~~~tmhlv 91 (118)
+ .||||+
T Consensus 93 ~------~tihLv 99 (99)
T 2kdb_A 93 Y------HMVHLV 99 (99)
T ss_dssp E------EEEEEC
T ss_pred C------CEEEeC
Confidence 6 588875
No 14
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.1e-19 Score=117.59 Aligned_cols=75 Identities=17% Similarity=0.446 Sum_probs=64.1
Q ss_pred eEEEEEeCCCceeeeeecC--CcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCC-CCCCCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFP--AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRS-PLCDIPGG 84 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~--~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i-~~~~~p~~ 84 (118)
++|+||+.+|+++. ++++ +++||++||++|++. .+++| +++|||||+||+|+|+.+|++|+| +++
T Consensus 2 mqI~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~----~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~----- 69 (87)
T 2lxa_A 2 VHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISE----EKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN----- 69 (87)
T ss_dssp CEEEEEECSSSCEE-CCEECCTTCBHHHHHHHHHHT----TSCSS--STTEEEEETTEECCTTCBHHHHCCCGGG-----
T ss_pred EEEEEEcCCCCEEE-EEEcCCCCCcHHHHHHHHHHH----hcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCC-----
Confidence 68999999999887 7755 999999999999433 35676 599999999999999999999999 555
Q ss_pred eEEEEEEeCCC
Q 033465 85 VTTMHVVVQPP 95 (118)
Q Consensus 85 ~~tmhlv~~~~ 95 (118)
.++||+.+++
T Consensus 70 -stl~v~~~~~ 79 (87)
T 2lxa_A 70 -STITVMIKPN 79 (87)
T ss_dssp -CEEEEEECCC
T ss_pred -CEEEEEcCCC
Confidence 5889888875
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=4.4e-19 Score=120.58 Aligned_cols=76 Identities=11% Similarity=0.136 Sum_probs=67.5
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p 82 (118)
+++..|+|+|++.+|+++. +++++++||++||++|++ .+++| +++|||||+||+|+|+.+|++|+|.++
T Consensus 24 ~~~~mm~I~VKtl~Gk~i~-lev~p~dTV~~lK~~Ia~-----k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~g--- 92 (100)
T 1uh6_A 24 GAATMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIAA-----QTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDG--- 92 (100)
T ss_dssp SCCCEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHHH-----HHCCC--GGGCEEEETTEECCSSCBHHHHTCCTT---
T ss_pred CCCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHH-----HhCCC--HHHEEEEECCEECCCCCCHHHcCCCCC---
Confidence 4556699999999999999 999999999999999964 46777 599999999999999999999999977
Q ss_pred CCeEEEEEEe
Q 033465 83 GGVTTMHVVV 92 (118)
Q Consensus 83 ~~~~tmhlv~ 92 (118)
.|+||+-
T Consensus 93 ---stlhL~~ 99 (100)
T 1uh6_A 93 ---MNLELYY 99 (100)
T ss_dssp ---EEEEEEC
T ss_pred ---CEEEEEe
Confidence 5888863
No 16
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.1e-19 Score=116.92 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=70.0
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
....++|+|++.+|+++. +++++++||.+||++|.+. .++| +++|||||.||.|+|+.+|++|+|.++
T Consensus 19 ~~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g---- 86 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 86 (98)
T ss_dssp ---CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBSGGGTCCTT----
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHCCCCCC----
Confidence 345699999999999998 9999999999999999754 4566 599999999999999999999999987
Q ss_pred CeEEEEEEeCCCCc
Q 033465 84 GVTTMHVVVQPPST 97 (118)
Q Consensus 84 ~~~tmhlv~~~~~~ 97 (118)
.++||+++..++
T Consensus 87 --~~i~l~~rl~GG 98 (98)
T 4hcn_B 87 --STLHLVLRLRGG 98 (98)
T ss_dssp --EEEEEECBCSCC
T ss_pred --CEEEEEEecCCC
Confidence 589999998875
No 17
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.77 E-value=1.2e-18 Score=114.54 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=69.1
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
....++|+|++.+|+++. +++++++||.+||++|.+. .++| +++|||+|+|+.|+|+.+|++|||.+|+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~--- 82 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES--- 82 (91)
T ss_dssp CCCSEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBTGGGTCCTTC---
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhh-----hCCC--hhhEEEEECCeECCCcCcHHHCCCCCCC---
Confidence 355699999999999998 9999999999999999654 5676 5999999999999999999999999874
Q ss_pred CeEEEEEEeCCC
Q 033465 84 GVTTMHVVVQPP 95 (118)
Q Consensus 84 ~~~tmhlv~~~~ 95 (118)
++|+++|.+
T Consensus 83 ---~i~l~~rlr 91 (91)
T 3v6c_B 83 ---TLHLVLRLR 91 (91)
T ss_dssp ---EEEEECCCC
T ss_pred ---EEEEEEecC
Confidence 889998864
No 18
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=111.13 Aligned_cols=80 Identities=24% Similarity=0.384 Sum_probs=70.5
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~ 81 (118)
++++..++|+|++.+|+.+. +++++++||++||++|++. .++| +++|||+|.||.|+|+.+|++|||.+|
T Consensus 2 ~~~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~LK~~i~~~-----~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g-- 71 (81)
T 2dzi_A 2 SSGSSGMQLTVKALQGRECS-LQVPEDELVSTLKQLVSEK-----LNVP--VRQQRLLFKGKALADGKRLSDYSIGPN-- 71 (81)
T ss_dssp CCSSSSEEEEEEETTSCEEE-EEECSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEECCTTSBGGGGTCCSS--
T ss_pred CCCCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCC--
Confidence 46778899999999999998 9999999999999999754 4566 599999999999999999999999987
Q ss_pred CCCeEEEEEEeCCC
Q 033465 82 PGGVTTMHVVVQPP 95 (118)
Q Consensus 82 p~~~~tmhlv~~~~ 95 (118)
.++|++++++
T Consensus 72 ----~~i~l~~~~~ 81 (81)
T 2dzi_A 72 ----SKLNLVVKPL 81 (81)
T ss_dssp ----BCCEEECCCC
T ss_pred ----CEEEEEEeCC
Confidence 3788888763
No 19
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.77 E-value=1.3e-18 Score=114.76 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=68.6
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++.+|+++. +++++++||.+||++|++. .++| +++|||+|.|+.|+|+.+|++|+|.++ .+
T Consensus 2 m~i~vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~------~~ 67 (96)
T 3k9o_B 2 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 67 (96)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred cEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhh-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCC------CE
Confidence 68999999999998 9999999999999999754 4666 599999999999999999999999987 48
Q ss_pred EEEEeCCCCchhh
Q 033465 88 MHVVVQPPSTEKA 100 (118)
Q Consensus 88 mhlv~~~~~~~~~ 100 (118)
+||+++..++...
T Consensus 68 i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 68 LHLVLRLRGYADL 80 (96)
T ss_dssp EEEEECCCC----
T ss_pred EEEEEEcCCCCcc
Confidence 9999999998764
No 20
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.77 E-value=7.1e-19 Score=112.32 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=69.8
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
+.++|+|++.+|+++. +++++++||.+||++|.++ +++| +++|||+|+|+.|+|+.||++|+|.++
T Consensus 2 ~~m~i~vk~~~g~~~~-~~v~~~~tv~~lk~~i~~~-----~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~------ 67 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEE------ 67 (79)
T ss_dssp CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCHHHHTCCTT------
T ss_pred CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----HCCC--cccEEEEECCEEeCCCCCHHHcCCCCC------
Confidence 3689999999999998 9999999999999999644 5676 589999999999999999999999987
Q ss_pred EEEEEEeCCCCc
Q 033465 86 TTMHVVVQPPST 97 (118)
Q Consensus 86 ~tmhlv~~~~~~ 97 (118)
.++|++++..|+
T Consensus 68 ~~i~l~~~~~GG 79 (79)
T 2uyz_B 68 DVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECCCC-
T ss_pred CEEEEEEeccCC
Confidence 589999998875
No 21
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.77 E-value=2.3e-18 Score=111.00 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=67.7
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
....++|+|++.+|+.+. +++++++||++||++|++.|. .+++| +++|||||+||.|+|+.+|++|+|.++
T Consensus 2 ~~~~m~i~vk~~~g~~~~-~~v~~~~TV~~lK~~i~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g---- 72 (85)
T 2wyq_A 2 IPMAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEK---- 72 (85)
T ss_dssp --CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHC--TTTCC--GGGEEEEETTEECCTTSBGGGGCCCTT----
T ss_pred CCceEEEEEEECCCCEEE-EEECCCCCHHHHHHHHHhhcc--ccCCC--HHHeEEEECCEECcCCCCHHHcCCCCC----
Confidence 356799999999999998 999999999999999976531 24566 599999999999999999999999987
Q ss_pred CeEEEEEEeCCCC
Q 033465 84 GVTTMHVVVQPPS 96 (118)
Q Consensus 84 ~~~tmhlv~~~~~ 96 (118)
.++|++++.+.
T Consensus 73 --~~i~l~~~~~~ 83 (85)
T 2wyq_A 73 --NFVVVMVTKTK 83 (85)
T ss_dssp --SEEEEEEC---
T ss_pred --CEEEEEEcCCC
Confidence 38888887654
No 22
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.77 E-value=9e-19 Score=114.75 Aligned_cols=79 Identities=24% Similarity=0.177 Sum_probs=66.7
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~ 86 (118)
.++|+|++.+|+++. +++++++||++||++|++. .++| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 4 ~m~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g------~ 69 (88)
T 2hj8_A 4 PLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------S 69 (88)
T ss_dssp EEEEEEEETTSCEEE-EEEESSSBHHHHHHHHHHH-----TCSC--TTTEEEESSSSCCCTTSBHHHHHCSTT------C
T ss_pred cEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence 689999999999998 9999999999999999654 5676 599999999999999999999999987 4
Q ss_pred EEEEEeCCCCchh
Q 033465 87 TMHVVVQPPSTEK 99 (118)
Q Consensus 87 tmhlv~~~~~~~~ 99 (118)
++||++++.++..
T Consensus 70 ~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 70 TVFMNLRLRGGLE 82 (88)
T ss_dssp EEEEEEC------
T ss_pred EEEEEEEcCCCcc
Confidence 8999999988764
No 23
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.77 E-value=2e-18 Score=116.56 Aligned_cols=79 Identities=18% Similarity=0.444 Sum_probs=65.2
Q ss_pred CCceeEEEEEeCCCceeeee--ecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCC-CCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPK--SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRS-PLCD 80 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~--~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i-~~~~ 80 (118)
..++++|+||+.+|+.+. + ++++++||++||++|.+. .+++| +++|||||+||+|+|+.+|++|+| ++|+
T Consensus 16 ~~~~m~I~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~----~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ 88 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISE----EKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANS 88 (98)
T ss_dssp --CCEEEEEEECSSSCEE-EEEEECTTCBHHHHHHHHHHT----TSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBC
T ss_pred CCCCEEEEEEcCCCCEEE-EEEecCCCChHHHHHHHHHHH----hcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCC
Confidence 457799999999999776 6 566999999999999543 24566 599999999999999999999999 8773
Q ss_pred CCCCeEEEEEEeCCC
Q 033465 81 IPGGVTTMHVVVQPP 95 (118)
Q Consensus 81 ~p~~~~tmhlv~~~~ 95 (118)
++|++++.+
T Consensus 89 ------ti~lmvskp 97 (98)
T 4a20_A 89 ------TITVMIKPN 97 (98)
T ss_dssp ------EEEEEECCC
T ss_pred ------EEEEEEeCC
Confidence 778887654
No 24
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.76 E-value=2.5e-18 Score=107.87 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=66.7
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++.+|+++. +++++++||++||++|++. .++| +++|||+|.|+.|+|+.+|++|+|.++ .+
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g------~~ 66 (76)
T 1ndd_A 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG------SV 66 (76)
T ss_dssp CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBGGGGTCCTT------CE
T ss_pred CEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCcHHHcCCCCC------CE
Confidence 57899999999998 9999999999999999754 4666 599999999999999999999999987 48
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+|++++..++
T Consensus 67 i~l~~~~~GG 76 (76)
T 1ndd_A 67 LHLVLALRGG 76 (76)
T ss_dssp EEEEECCC--
T ss_pred EEEEEeCCCC
Confidence 9999998875
No 25
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.5e-18 Score=111.48 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=67.8
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
+.++|+|++.+|+++. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.++
T Consensus 2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~------ 67 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTII-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNH------ 67 (85)
T ss_dssp --CEEEEECGGGCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETBEECCTTCBTTTTTCCTT------
T ss_pred CeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCeECCCCCCHHHCCCCCC------
Confidence 4689999999999998 9999999999999999754 4566 599999999999999999999999987
Q ss_pred EEEEEEeCCCCchh
Q 033465 86 TTMHVVVQPPSTEK 99 (118)
Q Consensus 86 ~tmhlv~~~~~~~~ 99 (118)
.++|++++..++..
T Consensus 68 ~~i~l~~rl~GG~g 81 (85)
T 3n3k_B 68 SALYLLLKLRGGGG 81 (85)
T ss_dssp CEEEEEECCC----
T ss_pred CEEEEEEeccCCCC
Confidence 48999999988753
No 26
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=2.4e-18 Score=114.64 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=70.2
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCC-CcccccCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRSPLCDIPG 83 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~-~tL~~~~i~~~~~p~ 83 (118)
...++|+||+.+| +++ +++++++||++||++|++. +++| +++|||||.||.|+|+ .+|++|+|+++
T Consensus 13 ~~~~~I~Vk~~~~-~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~g---- 79 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFT-VEVDRTETVSSLKDKIHIV-----ENTP--IKRMQLYYSGIELADDYRNLNEYGITEF---- 79 (94)
T ss_dssp SCCEEEEEECSSC-EEE-EEECTTCBHHHHHHHHHHH-----SSSC--TTTEEEEETTEEECCTTSBHHHHTCCTT----
T ss_pred CCCEEEEEEcCCc-EEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCEECCCCcccHHHCCCCCC----
Confidence 4569999999888 888 9999999999999999654 5676 5999999999999999 99999999977
Q ss_pred CeEEEEEEeCCCCch
Q 033465 84 GVTTMHVVVQPPSTE 98 (118)
Q Consensus 84 ~~~tmhlv~~~~~~~ 98 (118)
.++||++++.++.
T Consensus 80 --stl~lv~r~~gg~ 92 (94)
T 2kan_A 80 --SEIVVFLKSINRA 92 (94)
T ss_dssp --EEEEEEECCCSSC
T ss_pred --CEEEEEEeCCCCC
Confidence 5899999998874
No 27
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.76 E-value=1.2e-18 Score=116.43 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=70.5
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
..++|+|++.+|+++. +++++++||.+||++|.++ .++| +++|||||.|+.|+|+.||++|+|.+++
T Consensus 20 ~~m~I~Vk~~~g~~~~-l~v~~~~tv~~lK~~i~~~-----~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~----- 86 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEED----- 86 (97)
T ss_dssp CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCHHHHTCCTTC-----
T ss_pred CcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCC-----
Confidence 4599999999999998 9999999999999999644 5777 5899999999999999999999999874
Q ss_pred EEEEEEeCCCCc
Q 033465 86 TTMHVVVQPPST 97 (118)
Q Consensus 86 ~tmhlv~~~~~~ 97 (118)
++||+++..|+
T Consensus 87 -~I~l~~~~~GG 97 (97)
T 1wyw_B 87 -VIEVYQEQTGG 97 (97)
T ss_dssp -EEEEEESSSCC
T ss_pred -EEEEEEecCCC
Confidence 89999998875
No 28
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=1.5e-18 Score=113.54 Aligned_cols=75 Identities=16% Similarity=0.288 Sum_probs=67.1
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCee-cCCCCcccccCCCCCCCCCC
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI-LENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~-L~D~~tL~~~~i~~~~~p~~ 84 (118)
+-+.|++++.+|++++ +++++++||++||++|++. .++| +++|||||+||. |+|+.+|++|+|.+|.
T Consensus 9 ~~~~i~vk~l~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs---- 76 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFE-LEVDYRDTLLVVKQKIERS-----QHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTS---- 76 (84)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTS----
T ss_pred CceEEEEEecCCcEEE-EEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCC----
Confidence 4689999999999999 9999999999999999654 5676 599999999999 9999999999999873
Q ss_pred eEEEEEEeCC
Q 033465 85 VTTMHVVVQP 94 (118)
Q Consensus 85 ~~tmhlv~~~ 94 (118)
++||+++|
T Consensus 77 --~i~lv~~p 84 (84)
T 2kk8_A 77 --DIQLEVSS 84 (84)
T ss_dssp --CEEEEECC
T ss_pred --EEEEEEcC
Confidence 78888875
No 29
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.9e-18 Score=109.98 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=70.1
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
+.++|+|++.+|+++. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.++
T Consensus 2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~------ 67 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKW------ 67 (85)
T ss_dssp -CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTGGGTCCTT------
T ss_pred CeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCCHHHcCCCCC------
Confidence 4689999999999998 9999999999999999754 4566 599999999999999999999999977
Q ss_pred EEEEEEeCCCCch
Q 033465 86 TTMHVVVQPPSTE 98 (118)
Q Consensus 86 ~tmhlv~~~~~~~ 98 (118)
.++|++++..++.
T Consensus 68 ~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 68 STLFLLLRLRGGG 80 (85)
T ss_dssp CEEEEECCCCCC-
T ss_pred CEEEEEEECcCCC
Confidence 4899999998874
No 30
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4e-18 Score=108.39 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=66.4
Q ss_pred eeEEEEEeCCCcee-eeee-cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 7 QLEIKFRLTDGSDI-GPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 7 ~i~i~~~~~~g~~~-~~~~-v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
.++|+|++.+|+++ . ++ +++++||++||++|++. .++| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 2 ~m~i~Vk~~~g~~~~~-l~~v~~~~tv~~lK~~i~~~-----~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g----- 68 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQEL-----FHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLN----- 68 (78)
T ss_dssp CEEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTTTTTCCTT-----
T ss_pred cEEEEEEECCCCEEEE-EeccCCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCCHHHcCCCCC-----
Confidence 47899999999986 7 99 99999999999999644 5676 599999999999999999999999987
Q ss_pred eEEEEEEeCCC
Q 033465 85 VTTMHVVVQPP 95 (118)
Q Consensus 85 ~~tmhlv~~~~ 95 (118)
.++|++++++
T Consensus 69 -~~i~l~~r~~ 78 (78)
T 2faz_A 69 -DTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEECCC
T ss_pred -CEEEEEEeCC
Confidence 4889998864
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.75 E-value=6.1e-18 Score=106.06 Aligned_cols=76 Identities=25% Similarity=0.377 Sum_probs=67.9
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|++++.+|+.+. +++++++||++||++|++. .++| +++|||+|.|+.|+|+.+|++|++.++ .+
T Consensus 1 M~i~vk~~~g~~~~-i~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g------~~ 66 (76)
T 3a9j_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRE------ST 66 (76)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTGGGTCCTT------CE
T ss_pred CEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCeECCCCCcHHHcCCCCC------CE
Confidence 57899999999998 9999999999999999754 4566 599999999999999999999999987 48
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+|++++..|+
T Consensus 67 i~l~~~~~GG 76 (76)
T 3a9j_A 67 LHLVLRLRGG 76 (76)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEeCCCC
Confidence 9999998875
No 32
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=1.1e-17 Score=110.70 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=70.8
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCC-CcccccCCCCCC
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRSPLCD 80 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~-~tL~~~~i~~~~ 80 (118)
++++..|+|+|++.+|+.+. +++++++||++||++|.+. . +++|||||.||.|+|+ .+|++|+|.++
T Consensus 2 ~~~~~~m~i~Vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~-----~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g- 69 (95)
T 1wia_A 2 SSGSSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFPG-----Q-----ESQMKLIYQGRLLQDPARTLSSLNITNN- 69 (95)
T ss_dssp CCCCCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSSS-----T-----TTTCEEEETTEECCCSSCBTTTTTCCTT-
T ss_pred CCCCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHhh-----C-----cCcEEEEECCEEccCCcCCHHHcCCCCC-
Confidence 45677899999999999998 9999999999999999644 2 4899999999999999 99999999977
Q ss_pred CCCCeEEEEEEeCCCCchh
Q 033465 81 IPGGVTTMHVVVQPPSTEK 99 (118)
Q Consensus 81 ~p~~~~tmhlv~~~~~~~~ 99 (118)
.+|||+++.+....
T Consensus 70 -----~~i~l~~~~~~~~~ 83 (95)
T 1wia_A 70 -----CVIHCHRSPPGAAV 83 (95)
T ss_dssp -----EEEEEECCCCCCCC
T ss_pred -----CEEEEEECCCCCCC
Confidence 58999998766544
No 33
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.8e-18 Score=115.78 Aligned_cols=76 Identities=17% Similarity=0.318 Sum_probs=65.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+||+.+|+++. +++++++||.+||++|.+. .++| +++|||||+||.|+|+.+|++|||++|+ +
T Consensus 2 m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~------~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKVP-LDLEPSNTILETKTKLAQS-----ISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGD------Q 67 (106)
T ss_dssp -CEEEECTTCCEEE-ECCCTTSBHHHHHHHHHHT-----TTSC--GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred EEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--hhhEEEEECCEECCCcCCHHHcCCCCCC------E
Confidence 67999999999998 9999999999999999754 4566 5999999999999999999999999874 8
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+||+++...+
T Consensus 68 i~lv~~~~~~ 77 (106)
T 3m62_B 68 VVFMVSQKKS 77 (106)
T ss_dssp EEEECCC---
T ss_pred EEEEEcCCCC
Confidence 8888876543
No 34
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=1.5e-18 Score=118.72 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=70.0
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCC-------------CCceEEEeCCeecC-C
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRT-------------VKDVKLISAGKILE-N 67 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~-------------~~~~rLI~~Gk~L~-D 67 (118)
+|+...++|+|++.+|++++ ++|++++||++||++|.+.. ++|.. .++|||||+||.|+ |
T Consensus 2 ~~~~~~M~I~Vk~l~g~~~~-v~V~~~~TV~dLK~~I~~~~-----~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD 75 (105)
T 1v2y_A 2 SSGSSGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRYV-----QLKQEREGGVQHISWSYVWRTYHLTSAGEKLTED 75 (105)
T ss_dssp CCCCCSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHH-----HHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCS
T ss_pred CCCCCcEEEEEEecCCCEEE-EEECCCChHHHHHHHHHHHh-----CCCcccccCcceeeeeecceeEEEEeCCcCccCC
Confidence 35566799999999999999 99999999999999997652 23210 15789999999995 6
Q ss_pred CCcccccCCCCCCCCCCeEEEEEEeCCCCc
Q 033465 68 NRTLGECRSPLCDIPGGVTTMHVVVQPPST 97 (118)
Q Consensus 68 ~~tL~~~~i~~~~~p~~~~tmhlv~~~~~~ 97 (118)
+++|++|||.++ .++|+++++.+.
T Consensus 76 ~~tL~dygI~~g------~~l~lv~~lr~~ 99 (105)
T 1v2y_A 76 RKKLRDYGIRNR------DEVSFIKKLGQK 99 (105)
T ss_dssp SSBHHHHTCCSS------EEEEEEECSCSC
T ss_pred cCCHHHcCCCCC------CEEEEEehhccC
Confidence 799999999987 589999998764
No 35
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=5e-18 Score=114.24 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=72.2
Q ss_pred CCCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 1 ~~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
|...+..++|+|++.+|+ +. +++++++||.+||++|++. .++| +++|||||.||.|+|+.+|++|+|.++
T Consensus 16 ~~~~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~g- 85 (100)
T 1yqb_A 16 PRGSPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDG- 85 (100)
T ss_dssp CSCCTTEEEEEEECSSCE-EE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBHHHHTCCTT-
T ss_pred CCCCCCeEEEEEEcCCCc-EE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHCCCCCC-
Confidence 456778899999999986 66 9999999999999999654 5676 599999999999999999999999987
Q ss_pred CCCCeEEEEEEeCCCCch
Q 033465 81 IPGGVTTMHVVVQPPSTE 98 (118)
Q Consensus 81 ~p~~~~tmhlv~~~~~~~ 98 (118)
.++||+++..+++
T Consensus 86 -----stI~l~~r~~~~p 98 (100)
T 1yqb_A 86 -----LTVHLVIKRQHRA 98 (100)
T ss_dssp -----CEEEEEECCCCSC
T ss_pred -----CEEEEEEcCCCCC
Confidence 4889999887754
No 36
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=5.8e-18 Score=111.01 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=65.0
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~ 86 (118)
.++|.+++.+|+++. +++++++||++||++|++. .++| +++|||+|.||.|+|+.+|++|+|.++ .
T Consensus 9 ~~~i~v~~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~ 74 (88)
T 1sif_A 9 GLQLFIKTLTGKTFT-VEMEPSDTIENLKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 74 (88)
T ss_dssp -CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBSGGGTCCTT------C
T ss_pred ceEEEEEeCCCCEEE-EEECCCChHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCcHHHcCCCCC------C
Confidence 478999999999999 9999999999999999654 5676 599999999999999999999999987 4
Q ss_pred EEEEEeCCCCch
Q 033465 87 TMHVVVQPPSTE 98 (118)
Q Consensus 87 tmhlv~~~~~~~ 98 (118)
++|+++++.++.
T Consensus 75 ~i~l~~r~~GG~ 86 (88)
T 1sif_A 75 TLHLVLRLRGGG 86 (88)
T ss_dssp EEEEEC------
T ss_pred EEEEEEeCCCCC
Confidence 899999998863
No 37
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1e-17 Score=117.15 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=68.4
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~ 81 (118)
+.+...++|+|++. |+++. +++++++||.+||++|.+. .++| +++|||||.||.|+|+.+|++|+|.++
T Consensus 27 ~~~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g-- 95 (125)
T 1j8c_A 27 PAEPKIIKVTVKTP-KEKEE-FAVPENSSVQQFKEAISKR-----FKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDG-- 95 (125)
T ss_dssp CCCCCCEEEEEECS-SCEEE-EEECTTCCHHHHHHHHHHH-----HCSC--SSSEEEEETTEEESTTSCGGGTTCSSS--
T ss_pred cCCCCcEEEEEEeC-CeEEE-EEECCCCcHHHHHHHHHHH-----HCcC--cceEEEEECCEEcCCCCCHHHcCCCCC--
Confidence 34556799999998 99998 9999999999999999654 4676 599999999999999999999999976
Q ss_pred CCCeEEEEEEeCCCCchhh
Q 033465 82 PGGVTTMHVVVQPPSTEKA 100 (118)
Q Consensus 82 p~~~~tmhlv~~~~~~~~~ 100 (118)
.+|||+++..++...
T Consensus 96 ----stI~lv~~~~gg~~~ 110 (125)
T 1j8c_A 96 ----LTVHLVIKRDPNSSS 110 (125)
T ss_dssp ----EEEEEEEC-------
T ss_pred ----CEEEEEeccCCCCCC
Confidence 589999999887654
No 38
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=3.5e-18 Score=116.13 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=60.7
Q ss_pred EEEEEeCC----CceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 9 EIKFRLTD----GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 9 ~i~~~~~~----g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
.|.|+..+ |+.+. +++++++||++||++|++. +++| +++|||||+||+|+|+.||++|+|+++
T Consensus 17 ti~V~~~~~~~~~~~~~-lev~~~~TV~~lK~kI~~k-----~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~g----- 83 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNL-LETRLHITGRELRSKIAET-----FGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHN----- 83 (100)
T ss_dssp EEEEECCTTTCCSSSEE-EEEESSSBHHHHHHHHHHH-----TTCC--STTCEEEETTEECCTTSBHHHHTCCSS-----
T ss_pred EEEEEecCCCCCCcEEE-EEeCCcCHHHHHHHHHHHH-----HCcC--HHHeEEEeCCeECCCCCcHHHcCCCCC-----
Confidence 34445555 77888 9999999999999999644 5677 599999999999999999999999987
Q ss_pred eEEEEEEeCCCCch
Q 033465 85 VTTMHVVVQPPSTE 98 (118)
Q Consensus 85 ~~tmhlv~~~~~~~ 98 (118)
.++ +++++.+..
T Consensus 84 -sti-~vl~lrg~~ 95 (100)
T 1wju_A 84 -VKA-MVLELKQSS 95 (100)
T ss_dssp -EEE-EEECCCCCC
T ss_pred -CEE-EEEEECCCC
Confidence 455 556655543
No 39
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=118.70 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=71.0
Q ss_pred CCceeEEEEE-eCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465 4 VQDQLEIKFR-LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (118)
Q Consensus 4 ~~~~i~i~~~-~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p 82 (118)
.++++.++|+ ..+|..++ ++|+++.||++||++++.. .++| +++|||||+||+|+|++||++|||++|.
T Consensus 12 ~~~~itvkv~l~~~~~k~t-v~v~~d~TV~dLKe~ls~~-----~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~-- 81 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIV-IPFKVDTILKYLKDHFSHL-----LGIP--HSVLQIRYSGKILKNNETLVQHGVKPQE-- 81 (118)
T ss_dssp CSSCEEEEEEETTTCCEEE-EEECSSSCSHHHHHHHHHH-----HTCC--TTTEEEEETTEEECSSCCHHHHSCCSSC--
T ss_pred cCccEEEEEEEcCCCcEEE-EEeCCCCcHHHHHHHHHhh-----hCCC--hHHEEEEECCeEcCCcchHHHcCCCCCC--
Confidence 4567888988 45677888 9999999999999999754 4577 5999999999999999999999999874
Q ss_pred CCeEEEEEEeCCCCchh
Q 033465 83 GGVTTMHVVVQPPSTEK 99 (118)
Q Consensus 83 ~~~~tmhlv~~~~~~~~ 99 (118)
|+||+++...|..
T Consensus 82 ----TIhLvi~s~~p~~ 94 (118)
T 2daf_A 82 ----IVQVEIFSTNPDL 94 (118)
T ss_dssp ----EEEEEEEESCTTT
T ss_pred ----EEEEEEecCCCcc
Confidence 9999999987765
No 40
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.4e-17 Score=110.53 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=67.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++.+|+.+. +++++++||++||++|++.+. .+++| +++|||||+||.|+|+.+|++|||.+|+ +
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~------~ 69 (95)
T 1uel_A 1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKN------F 69 (95)
T ss_dssp CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSS------E
T ss_pred CEEEEEeCCCCEEE-EEECCCCHHHHHHHHHHhhcc--cCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCC------E
Confidence 57899999999998 999999999999999976531 14666 5999999999999999999999999873 7
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+|++++.+.+
T Consensus 70 i~l~~~~~~~ 79 (95)
T 1uel_A 70 VVVMVTKPKA 79 (95)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEeCCCC
Confidence 8888875443
No 41
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.73 E-value=1.2e-17 Score=114.10 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=69.9
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
..++|+|++.+|+++. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.++
T Consensus 34 ~~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~g------ 99 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 99 (111)
T ss_dssp GCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTTTTTCCTT------
T ss_pred ccEEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHH-----hCCC--hHHEEEEECCEECCCCCcHHHCCCCCC------
Confidence 4699999999999998 9999999999999999754 4666 599999999999999999999999987
Q ss_pred EEEEEEeCCCCc
Q 033465 86 TTMHVVVQPPST 97 (118)
Q Consensus 86 ~tmhlv~~~~~~ 97 (118)
.++||+++.+++
T Consensus 100 s~I~l~~rl~GG 111 (111)
T 3vdz_A 100 STLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECCCC-
T ss_pred CEEEEEEecCCC
Confidence 489999998875
No 42
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=4.7e-18 Score=112.54 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
.+..++|+|++. |+++. +++++++||.+||++|++. .++| +++|||||.||.|+|+.+|++|+|.++
T Consensus 14 ~~~~m~i~Vk~~-g~~~~-~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g---- 80 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHE-FFLAENSNVRRFKKQISKY-----LHCN--ADRLVLIFTGKILRDQDILSQRGILDG---- 80 (96)
T ss_dssp CSCEEEEEEECS-SSEEE-EEEETTCCHHHHHHHHHHH-----TCSC--TTTBCCEETTEECCTTSCHHHHTCCTT----
T ss_pred CCCcEEEEEEEC-CeEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCcCCHHHCCCCCC----
Confidence 456799999998 99998 9999999999999999754 4666 599999999999999999999999977
Q ss_pred CeEEEEEEeCCCCch
Q 033465 84 GVTTMHVVVQPPSTE 98 (118)
Q Consensus 84 ~~~tmhlv~~~~~~~ 98 (118)
.++||+++..++.
T Consensus 81 --~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 81 --STVHVVVRSHSGP 93 (96)
T ss_dssp --EEEECCBCCSSCS
T ss_pred --CEEEEEEeCCCCC
Confidence 5899999988764
No 43
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.73 E-value=2e-17 Score=104.41 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=65.0
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
+.++|+|++ +|+.+. +++++++||++||++|++. .++| +++|||+|.||.|+|+.+|++|||.+|
T Consensus 3 M~m~i~vk~-~g~~~~-~~v~~~~tV~~LK~~i~~~-----~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g------ 67 (77)
T 2bwf_A 3 MSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDG------ 67 (77)
T ss_dssp EEEEEEEEE-TTEEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred eEEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHH-----hCCC--HHHEEEEECCeEcCCCCCHHHcCCCCC------
Confidence 348899999 999998 9999999999999999654 4666 599999999999999999999999987
Q ss_pred EEEEEEeCC
Q 033465 86 TTMHVVVQP 94 (118)
Q Consensus 86 ~tmhlv~~~ 94 (118)
.++|++.++
T Consensus 68 ~~i~l~~~~ 76 (77)
T 2bwf_A 68 HSVHLVKSQ 76 (77)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEcC
Confidence 378888765
No 44
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=9.8e-18 Score=111.15 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=66.3
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
..++|+|++ |+++. +++++++||++||++|++. .++| +++|||+|.||.|+|+.+|++|+|.++
T Consensus 18 ~~m~I~Vk~--g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~g------ 81 (93)
T 2l7r_A 18 GSMQLFVRA--QELHT-FEVTGQETVAQIKAHVASL-----EGIA--PEDQVVLLAGAPLEDEATLGQCGVEAL------ 81 (93)
T ss_dssp --CEEEEES--SSEEE-EECCSSCBHHHHHHHHHHH-----HTCC--GGGCEEEETTEECCTTSBHHHHTCCSS------
T ss_pred CcEEEEEEC--CCEEE-EEeCCCCcHHHHHHHHHHH-----hCcC--hhHEEEEECCEECCCCCcHHHCCCCCC------
Confidence 348888888 88998 9999999999999999644 5676 599999999999999999999999987
Q ss_pred EEEEEEeCCCCc
Q 033465 86 TTMHVVVQPPST 97 (118)
Q Consensus 86 ~tmhlv~~~~~~ 97 (118)
.++||++++.++
T Consensus 82 stI~lv~rl~GG 93 (93)
T 2l7r_A 82 TTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEECCCCCC
T ss_pred CEEEEEEecCCC
Confidence 489999999875
No 45
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.72 E-value=2.6e-17 Score=117.31 Aligned_cols=80 Identities=24% Similarity=0.193 Sum_probs=69.8
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
...++|++++.+|+++. +++++++||++||++|.+. +++| +++|||+|+|+.|+|+.+|++|+|+++
T Consensus 79 ~~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g----- 145 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL----- 145 (159)
T ss_dssp CCCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTCCTT-----
T ss_pred CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHH-----HCCC--HHHEEEEECCeecCCCCCHHHcCCCCC-----
Confidence 45688999999999998 9999999999999999644 5677 599999999999999999999999987
Q ss_pred eEEEEEEeCCCCch
Q 033465 85 VTTMHVVVQPPSTE 98 (118)
Q Consensus 85 ~~tmhlv~~~~~~~ 98 (118)
.++||++++.++-
T Consensus 146 -~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 146 -STVFMNLRLRGGG 158 (159)
T ss_dssp -CEEEEEECCC---
T ss_pred -CEEEEEEecCCCC
Confidence 4899999999873
No 46
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.71 E-value=4.2e-17 Score=108.40 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=68.5
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++.+|+++. +++++++||++||++|++. .++| +++|||+|.||.|+|+.+|++|+|.++ .+
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~-----~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~ 66 (98)
T 1yx5_B 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (98)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----TCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCCHHHcCCCCC------CE
Confidence 57899999999998 9999999999999999754 4666 599999999999999999999999987 48
Q ss_pred EEEEeCCCCchh
Q 033465 88 MHVVVQPPSTEK 99 (118)
Q Consensus 88 mhlv~~~~~~~~ 99 (118)
+|++++..++..
T Consensus 67 i~l~~~~~gG~~ 78 (98)
T 1yx5_B 67 LHLVLRLRGGRD 78 (98)
T ss_dssp EEEEECCCCC--
T ss_pred EEEEEeCCCCCc
Confidence 999999987755
No 47
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.71 E-value=2e-17 Score=112.75 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=72.3
Q ss_pred CCceeEEEEEeC---CCceeeeeecCC-cccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465 4 VQDQLEIKFRLT---DGSDIGPKSFPA-ATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (118)
Q Consensus 4 ~~~~i~i~~~~~---~g~~~~~~~v~~-~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~ 79 (118)
....|+|+|++. +|+.+. +++++ ++||.+||++|++. .++| +++|||+|.|++|+|+.+|++|+|.++
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~-l~v~~l~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g 95 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAGE-----IQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAG 95 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHHH-----TTCC--TTTSEEECSSSBCCTTSBTTTTTCSSS
T ss_pred CCCcEEEEEEecccCCCcEEE-EEecCCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEECCCCCcHHHCCCCCC
Confidence 345799999998 899998 99998 99999999999644 5677 599999999999999999999999987
Q ss_pred CCCCCeEEEEEEeCCCCchh
Q 033465 80 DIPGGVTTMHVVVQPPSTEK 99 (118)
Q Consensus 80 ~~p~~~~tmhlv~~~~~~~~ 99 (118)
.++||+++..++.+
T Consensus 96 ------~~l~l~~r~~GGk~ 109 (111)
T 1we6_A 96 ------EILTLSLRERSGPS 109 (111)
T ss_dssp ------CEEEEECSSCCSSC
T ss_pred ------CEEEEEEEcCCCCC
Confidence 48999999998853
No 48
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.6e-17 Score=111.41 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=68.9
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
..++|+|++.+|+++. +++++++||++||++|.+. .++| +++|||+|+||.|+|+.+|++|||.+|
T Consensus 22 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------ 87 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHAA-----EGVE--PGSQRWFFSGRPLTDKMKFEELKIPKD------ 87 (106)
T ss_dssp CSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHHT-----TCCC--STTCEEEETTEECCTTSHHHHCCCSSS------
T ss_pred CeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence 4599999999999998 9999999999999999644 5676 599999999999999999999999987
Q ss_pred EEEEEEeCCCCc
Q 033465 86 TTMHVVVQPPST 97 (118)
Q Consensus 86 ~tmhlv~~~~~~ 97 (118)
.++||+++...+
T Consensus 88 ~ti~lv~~~~~~ 99 (106)
T 1ttn_A 88 YVVQVIVSQPVQ 99 (106)
T ss_dssp CEEEEECCCSSC
T ss_pred CEEEEEEeCCCC
Confidence 488999886644
No 49
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=110.23 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=67.9
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
+...++|+|++. |+.+. +++++++||++||++|++. .++| +++|||||.||.|+|+.+|++|||.+|
T Consensus 22 ~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g---- 88 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEE-FAVPENSSVQQFKEEISKR-----FKSH--TDQLVLIFAGKILKDQDTLSQHGIHDG---- 88 (101)
T ss_dssp -CCCEEEEEECS-SCEEE-EEECSCCCHHHHHHHHHHH-----HTCC--GGGEEEEETTEEECTTCCTGGGTCCTT----
T ss_pred CCCeEEEEEEeC-CcEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCC----
Confidence 456799999998 88898 9999999999999999654 5676 599999999999999999999999987
Q ss_pred CeEEEEEEeCCCC
Q 033465 84 GVTTMHVVVQPPS 96 (118)
Q Consensus 84 ~~~tmhlv~~~~~ 96 (118)
.++||++++++
T Consensus 89 --~~I~l~~~~~~ 99 (101)
T 2klc_A 89 --LTVHLVIKTQN 99 (101)
T ss_dssp --CEEEEEECCSS
T ss_pred --CEEEEEEcCCC
Confidence 37888888765
No 50
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.8e-17 Score=111.07 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=70.9
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
+...|+|+|+..+|+ +. +++++++||.+||++|++. .++| +++|||||.||.|+|+.+|++|+|.++
T Consensus 14 ~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g---- 80 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDG---- 80 (106)
T ss_dssp CSSEEEEEEECSSCE-EE-EEEETTCCHHHHHHHHHHH-----HTCC--TTTEEEEETTEECCTTSCHHHHTCCTT----
T ss_pred CCceEEEEEEeCCCc-EE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCC----
Confidence 356699999999886 66 9999999999999999754 4666 599999999999999999999999976
Q ss_pred CeEEEEEEeCCCCchhh
Q 033465 84 GVTTMHVVVQPPSTEKA 100 (118)
Q Consensus 84 ~~~tmhlv~~~~~~~~~ 100 (118)
.+|||+++..++...
T Consensus 81 --~~i~l~~~~~~~~~~ 95 (106)
T 1wx7_A 81 --LTVHLVIKRQHRAMG 95 (106)
T ss_dssp --EEEEEEECCCCCSCC
T ss_pred --CEEEEEEcCCCCCCC
Confidence 589999998877553
No 51
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.71 E-value=3.7e-17 Score=119.37 Aligned_cols=79 Identities=24% Similarity=0.358 Sum_probs=69.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+||+.+|+++. +++++++||.+||++|++. .++| +++|||||+||.|+|+.+|++|+|+++ .+
T Consensus 1 MqI~Vk~~~Gk~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~g------st 66 (169)
T 3l0w_B 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (169)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCTTSBGGGGTCCTT------CE
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCccccCcCcHHHcCCCCC------CE
Confidence 57899999999999 9999999999999999654 5676 599999999999999999999999987 48
Q ss_pred EEEEeCCCCchhh
Q 033465 88 MHVVVQPPSTEKA 100 (118)
Q Consensus 88 mhlv~~~~~~~~~ 100 (118)
+||+++..++...
T Consensus 67 I~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 67 LHLVLRLRGGGGE 79 (169)
T ss_dssp EEEEECCCC---C
T ss_pred EEEEEEecccccc
Confidence 9999999998775
No 52
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.71 E-value=2e-17 Score=115.33 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=63.0
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC-CCCe
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI-PGGV 85 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~-p~~~ 85 (118)
+|+|+++... .++. +++++++||++||++|. +.+++| +++|||||+||.|+|++||++|||.+..+ +...
T Consensus 2 ~mfl~ir~~k-tti~-lev~~sdTV~~lK~kI~-----~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~ 72 (118)
T 2fnj_B 2 DVFLMIRRHK-TTIF-TDAKESSTVFELKRIVE-----GILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAP 72 (118)
T ss_dssp EEEEEEEEBT-EEEE-EEEETTSBHHHHHHHHH-----HHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBC
T ss_pred cEEEEEecCC-EEEE-EEeCCcChHHHHHHHHH-----HHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCC
Confidence 4667776532 3576 99999999999999995 457887 59999999999999999999999994100 1112
Q ss_pred EEEEEEeCCCCc
Q 033465 86 TTMHVVVQPPST 97 (118)
Q Consensus 86 ~tmhlv~~~~~~ 97 (118)
.|+||++| .++
T Consensus 73 stL~L~lr-~~g 83 (118)
T 2fnj_B 73 ATVGLAFR-ADD 83 (118)
T ss_dssp EEEEEEEB-SSS
T ss_pred CEEEEEec-CCC
Confidence 79999999 444
No 53
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.71 E-value=2e-17 Score=115.36 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=63.6
Q ss_pred eeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC-CCC
Q 033465 7 QLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI-PGG 84 (118)
Q Consensus 7 ~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~-p~~ 84 (118)
+|+|+++. ++ ++. +++++++||.+||++|. +.+++| +++|||||+||+|+|++||++|||..+.. +..
T Consensus 2 ~vFl~Ikr--~ktTI~-ldve~sdTV~~lK~kI~-----~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~ 71 (118)
T 4ajy_B 2 DVFLMIRR--HKTTIF-TDAKESSTVFELKRIVE-----GILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQA 71 (118)
T ss_dssp EEEEEEEE--BTEEEE-EEEETTSBHHHHHHHHH-----HHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTB
T ss_pred ceEEEEec--CCEEEE-EEcCCCChHHHHHHHHH-----HHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCC
Confidence 45566655 44 666 89999999999999995 457787 59999999999999999999999997222 333
Q ss_pred eEEEEEEeCCC
Q 033465 85 VTTMHVVVQPP 95 (118)
Q Consensus 85 ~~tmhlv~~~~ 95 (118)
..|+||++|..
T Consensus 72 ~atl~Lvlr~~ 82 (118)
T 4ajy_B 72 PATVGLAFRAD 82 (118)
T ss_dssp CEEEEEEECCS
T ss_pred CCEEEEEEecC
Confidence 47999999974
No 54
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.70 E-value=1.9e-17 Score=113.59 Aligned_cols=83 Identities=16% Similarity=0.279 Sum_probs=71.8
Q ss_pred CCceeEEEEEeC----------CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccc
Q 033465 4 VQDQLEIKFRLT----------DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGE 73 (118)
Q Consensus 4 ~~~~i~i~~~~~----------~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~ 73 (118)
....|.|.|+.. +|+++. +++++++||.+||++|.+. .++| +++|||||.|+.|+|+.+|++
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~ 93 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLV-FTLPLTDQVSVIKVKIHEA-----TGMP--AGKQKLQYEGIFIKDSNSLAY 93 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEE-EEECSCSBTHHHHHHHHHH-----SSCC--TTTEEEEETTEEECTTSBHHH
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEE-EEECCCCCHHHHHHHHHHH-----HCCC--hHHEEEEECCEECCCCCCHHH
Confidence 445788888886 477888 9999999999999999654 5676 599999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCCchhh
Q 033465 74 CRSPLCDIPGGVTTMHVVVQPPSTEKA 100 (118)
Q Consensus 74 ~~i~~~~~p~~~~tmhlv~~~~~~~~~ 100 (118)
|+|.++ .++||+++..++.++
T Consensus 94 y~i~~g------~~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 94 YNMASG------AVIHLALKERSGPSS 114 (115)
T ss_dssp HTCCSS------CEEEEEECCCSCCSC
T ss_pred CCCCCC------CEEEEEEEcCCCCCC
Confidence 999977 489999999998654
No 55
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.70 E-value=8.8e-17 Score=109.62 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=69.5
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
..++|+|++.+|+.+. +++++++||++||++|++. .++| +++|||+|.||.|+|+.+|++|+|.++
T Consensus 34 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g------ 99 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 99 (111)
T ss_dssp SCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCSSCBTTTTTCCTT------
T ss_pred CeEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence 4699999999999998 9999999999999999754 4566 599999999999999999999999987
Q ss_pred EEEEEEeCCCCc
Q 033465 86 TTMHVVVQPPST 97 (118)
Q Consensus 86 ~tmhlv~~~~~~ 97 (118)
.++||+++..++
T Consensus 100 s~I~l~~rl~GG 111 (111)
T 2ojr_A 100 STLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECCCC-
T ss_pred CEEEEEEeCCCC
Confidence 489999998875
No 56
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.53 E-value=1.2e-18 Score=110.26 Aligned_cols=75 Identities=25% Similarity=0.384 Sum_probs=66.3
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++.+|+++. +++++++||++||++|++ ..++| +++|||+|+|+.|+|+.+|++|+|.+| .+
T Consensus 1 M~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~-----~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g------~~ 66 (76)
T 3b1l_X 1 MIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAK-----QQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQ------SI 66 (76)
Confidence 46888999999998 999999999999999964 45676 599999999999999999999999977 48
Q ss_pred EEEEeCCCC
Q 033465 88 MHVVVQPPS 96 (118)
Q Consensus 88 mhlv~~~~~ 96 (118)
+|+++++++
T Consensus 67 i~l~~rlrg 75 (76)
T 3b1l_X 67 VHIVQRPRR 75 (76)
Confidence 899998765
No 57
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=6.3e-17 Score=108.86 Aligned_cols=84 Identities=7% Similarity=0.082 Sum_probs=70.8
Q ss_pred CCCCceeEEEEEeCCC----ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCC-CcccccCC
Q 033465 2 ASVQDQLEIKFRLTDG----SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRS 76 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g----~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~-~tL~~~~i 76 (118)
+++.+.++|+|++.+| +.+. +++++++||++||++|++. .++| +++|||||.||.|+|+ .+|++|+|
T Consensus 2 ~~~~~~m~I~Vk~~~~~~~~~~~~-i~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~gk~L~D~~~tL~~ygI 73 (102)
T 1v5o_A 2 SSGSSGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCELE-----SGVP--AEEAQIVYMEQLLTDDHCSLGSYGL 73 (102)
T ss_dssp CCCSCCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHHH-----TCCC--GGGBCEEETTEEECCSSSBHHHHTC
T ss_pred CCCCCeEEEEEEECCCCcCceEEE-EEcCCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCEECCCCcccHHHCCC
Confidence 3556679999998754 6888 9999999999999999644 5676 5999999999999887 69999999
Q ss_pred CCCCCCCCeEEEEEEeCCCCchh
Q 033465 77 PLCDIPGGVTTMHVVVQPPSTEK 99 (118)
Q Consensus 77 ~~~~~p~~~~tmhlv~~~~~~~~ 99 (118)
.++ .++||+.+..++..
T Consensus 74 ~~g------~~l~l~~~~~gg~~ 90 (102)
T 1v5o_A 74 KDG------DMVVLLQKDNVGLR 90 (102)
T ss_dssp CTT------EEEEECBCCCCCCS
T ss_pred CCC------CEEEEEECCCCCCC
Confidence 987 58999998877744
No 58
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.6e-17 Score=111.00 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=64.1
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
...|+|+|++ +|+.+. +++++++||++||++|++. .++| +++|||||+||.|+|+.+|++|||++|
T Consensus 26 ~m~i~I~Vk~-~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~g----- 91 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDG----- 91 (101)
T ss_dssp ---CCEEEEC-SSCCCC-BCCCTTSBHHHHHHHHHHH-----HSCC--STTCCEEETTEECCTTSBTTTTTCCTT-----
T ss_pred CcEEEEEEEE-CCEEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCcCcHHHCCCCCC-----
Confidence 3568888987 899998 9999999999999999654 4676 599999999999999999999999987
Q ss_pred eEEEEEEeCC
Q 033465 85 VTTMHVVVQP 94 (118)
Q Consensus 85 ~~tmhlv~~~ 94 (118)
.++||+.+.
T Consensus 92 -~tI~lv~~~ 100 (101)
T 3m63_B 92 -HSVHLVKSQ 100 (101)
T ss_dssp -EEEEECCCC
T ss_pred -CEEEEEeCC
Confidence 588988764
No 59
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.3e-17 Score=110.38 Aligned_cols=78 Identities=24% Similarity=0.363 Sum_probs=70.0
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~ 86 (118)
..+|++++.+|+++. +++++++||++||++|++. .++| +++|||+|+||.|+|+.+|++|+|.++ .
T Consensus 9 ~~~i~vk~l~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------s 74 (114)
T 2kdi_A 9 EFQIFAKTLTGKTIT-LEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRE------S 74 (114)
T ss_dssp CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTTTTTCCSS------C
T ss_pred cEEEEEEeCCCcEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCcHHHCCCCCC------C
Confidence 468899999999999 9999999999999999654 5676 599999999999999999999999987 4
Q ss_pred EEEEEeCCCCch
Q 033465 87 TMHVVVQPPSTE 98 (118)
Q Consensus 87 tmhlv~~~~~~~ 98 (118)
++||++++.++.
T Consensus 75 tI~l~~~~~GG~ 86 (114)
T 2kdi_A 75 TLHLVLRLRGGS 86 (114)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEEEcCCCc
Confidence 899999998874
No 60
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.9e-16 Score=107.40 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=66.0
Q ss_pred ceeEEEEEeCCC---ceeeeeecCC---------cccHHHHHHHhhhhCCCcccCCCCCCCc-eEEEeCCeecCCCCccc
Q 033465 6 DQLEIKFRLTDG---SDIGPKSFPA---------ATSVATLKESVLSQWPKEKENGPRTVKD-VKLISAGKILENNRTLG 72 (118)
Q Consensus 6 ~~i~i~~~~~~g---~~~~~~~v~~---------~~TV~~lK~~I~~~wp~~~~~~p~~~~~-~rLI~~Gk~L~D~~tL~ 72 (118)
+.++|+||+.+| ..+. ++|++ ++||.+||++|.+..| +++| +++ |||||.||.|+|+.+|+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~-l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~---~gip--~~~~qrLi~~Gk~L~D~~tL~ 84 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSI-LQLPETELGEYSLGGYSISFLKQLIAGKLQ---ESVP--DPELIDLIYCGRKLKDDQTLD 84 (107)
T ss_dssp CSCCEEEEETTCTTSCCEE-ECCCCCSSCSSCCCCCBHHHHHHHHHHHCT---TTCC--CSSSEEEEETTEECCTTCBHH
T ss_pred CceEEEEEeCCCCCccEEE-EEecCccccccCcccCCHHHHHHHHHHHhc---cCCC--hhhcEEEEECCeECCCCCcHH
Confidence 348899999988 7887 88554 5999999999976532 1566 588 99999999999999999
Q ss_pred ccCCCCCCCCCCeEEEEEEeCCCCc
Q 033465 73 ECRSPLCDIPGGVTTMHVVVQPPST 97 (118)
Q Consensus 73 ~~~i~~~~~p~~~~tmhlv~~~~~~ 97 (118)
+|+|+++ .++||+++..+.
T Consensus 85 ~y~i~~g------~~i~lv~~~~~~ 103 (107)
T 1x1m_A 85 FYGIQPG------STVHVLRKSWSG 103 (107)
T ss_dssp HHTCCTT------CEEEEEESSCCS
T ss_pred HcCCCCC------CEEEEEeCCCCC
Confidence 9999987 378999887654
No 61
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=113.73 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=70.6
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
....++|+|++.+|+++. +++++++||.+||++|.+. .++| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 17 ~~~~m~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~-----~gip--~~~QrL~~~g~~L~d~~tL~~~~i~~~---- 84 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 84 (172)
T ss_dssp --CCEEEEEEETTTEEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTGGGTCCTT----
T ss_pred CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCccccccCCHhHcCCccc----
Confidence 345699999999999998 9999999999999999644 5676 599999999999999999999999987
Q ss_pred CeEEEEEEeCCCCch
Q 033465 84 GVTTMHVVVQPPSTE 98 (118)
Q Consensus 84 ~~~tmhlv~~~~~~~ 98 (118)
.++||+++..++.
T Consensus 85 --~~l~l~~~~~gg~ 97 (172)
T 3u30_A 85 --STLHLVLRLRGGM 97 (172)
T ss_dssp --CEEEEEECCCCCE
T ss_pred --ceeeeeecccccc
Confidence 4889998887763
No 62
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=3.1e-16 Score=103.07 Aligned_cols=81 Identities=17% Similarity=0.096 Sum_probs=67.9
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCc-----ccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCC-CCcccccC
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPKSFPAA-----TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILEN-NRTLGECR 75 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~-----~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D-~~tL~~~~ 75 (118)
++.++.|+|+|++ .|..+. ++++++ +||.+||++|++. .++| +++|||||.||.|+| +.+|++|+
T Consensus 2 ~~~~~~~~v~Vk~-~~~~~~-i~v~~~~~~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~Gk~L~D~~~~L~~~~ 72 (92)
T 1wxv_A 2 SSGSSGLTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEEV-----IGVP--QSFQKLIFKGKSLKEMETPLSALG 72 (92)
T ss_dssp CCCCSSEEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEEECCSSSBHHHHT
T ss_pred CCCCCeEEEEEEE-CCEEEE-EEECCCcCcccCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeecCCCcccHHHCC
Confidence 4567789999998 588888 999995 9999999999644 5676 599999999999998 55899999
Q ss_pred CCCCCCCCCeEEEEEEeCCCCc
Q 033465 76 SPLCDIPGGVTTMHVVVQPPST 97 (118)
Q Consensus 76 i~~~~~p~~~~tmhlv~~~~~~ 97 (118)
|.++ .++||+.++..+
T Consensus 73 i~~g------~~i~l~~~~~~~ 88 (92)
T 1wxv_A 73 IQDG------CRVMLIGKKNSG 88 (92)
T ss_dssp CCSS------EEEEEESCCSCS
T ss_pred CCCC------CEEEEEecCCCC
Confidence 9976 588988876544
No 63
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.66 E-value=1.5e-16 Score=118.61 Aligned_cols=79 Identities=24% Similarity=0.332 Sum_probs=71.0
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~ 86 (118)
.++|+|++.+|+++. +++++++||.+||++|.+. .++| +++|||||+|+.|+|+.+|++|+|+++ .
T Consensus 105 eMqI~VKtl~Gkt~~-l~V~~s~TV~~LK~kI~~~-----~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~g------s 170 (189)
T 3q3f_A 105 GGQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 170 (189)
T ss_dssp CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTCBGGGGTCCTT------C
T ss_pred ceeeeeecCCCCEEE-EEeCCCCcHHHHHHHHHhc-----cCCC--HHHEEEEECCEECCCCCCHHHCCCCCC------C
Confidence 489999999999998 9999999999999999644 5676 599999999999999999999999987 4
Q ss_pred EEEEEeCCCCchh
Q 033465 87 TMHVVVQPPSTEK 99 (118)
Q Consensus 87 tmhlv~~~~~~~~ 99 (118)
++||++++.++..
T Consensus 171 tI~LvlrlrGG~~ 183 (189)
T 3q3f_A 171 TLHLVLRLRGGGQ 183 (189)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEEEEcCCCCc
Confidence 8999999988743
No 64
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=1.5e-16 Score=106.36 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=67.2
Q ss_pred CCCCceeEEEEEeCCCcee-eeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 2 ASVQDQLEIKFRLTDGSDI-GPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~-~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+|+++.|+|+|+. .|+.+ . +++++++||.+||++|++. .++| +++|||||.||.|+|+ +|++|+|.+++
T Consensus 2 ~~~~~~m~i~Vk~-~g~~~~~-l~v~~~~TV~~lK~~I~~~-----tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~ 71 (96)
T 1wgg_A 2 SSGSSGYSVTVKW-GKEKFEG-VELNTDEPPMVFKAQLFAL-----TGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGM 71 (96)
T ss_dssp CSCCCEEEEEEEE-TTEEEEE-EEEESSSCHHHHHHHHHHH-----TCCC--TTTSCCEETTEECCSS-CCCSCCCCSSC
T ss_pred CCCCcEEEEEEEE-CCEEEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCC
Confidence 5677889999996 68888 7 9999999999999999644 5777 5999999999999999 99999999873
Q ss_pred CCCCeEEEEEEeCCC
Q 033465 81 IPGGVTTMHVVVQPP 95 (118)
Q Consensus 81 ~p~~~~tmhlv~~~~ 95 (118)
++||+..+.
T Consensus 72 ------~i~l~~~~~ 80 (96)
T 1wgg_A 72 ------TVLMMGSAD 80 (96)
T ss_dssp ------EEECCCCCC
T ss_pred ------EEEEEecch
Confidence 778776654
No 65
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.65 E-value=3e-16 Score=103.37 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=67.9
Q ss_pred CCCCceeEEEEEeCCCceeeee-ecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE---eCCeecCCCCcccccCCC
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPK-SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI---SAGKILENNRTLGECRSP 77 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~-~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI---~~Gk~L~D~~tL~~~~i~ 77 (118)
+++++.++|+|+. .|+++. + ++++++||.+||++|++. .++| +++|||| |.|+.|+|+.+|++|+|.
T Consensus 2 ~~~~~~m~i~Vk~-~g~~~~-i~~v~~~~TV~~lK~~I~~~-----~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~ 72 (90)
T 1v5t_A 2 SSGSSGLPIIVKW-GGQEYS-VTTLSEDDTVLDLKQFLKTL-----TGVL--PERQKLLGLKVKGKPAENDVKLGALKLK 72 (90)
T ss_dssp CCCCCSCCEEEEE-TTEEEE-ECSCCSSSBHHHHHHHHHHH-----TCCC--TTTCEEESCEETTEECCTTSBHHHHTCC
T ss_pred CCCCceEEEEEEE-CCEEEE-EEEeCCCCCHHHHHHHHHHH-----HCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCC
Confidence 4567789999997 788998 9 999999999999999644 6677 5999999 999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCC
Q 033465 78 LCDIPGGVTTMHVVVQPP 95 (118)
Q Consensus 78 ~~~~p~~~~tmhlv~~~~ 95 (118)
++ .++||+..+.
T Consensus 73 ~g------~~l~l~~~~~ 84 (90)
T 1v5t_A 73 PN------TKIMMMGTRE 84 (90)
T ss_dssp TT------EEEEEECCCS
T ss_pred CC------CEEEEEecCc
Confidence 77 4788876553
No 66
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.65 E-value=8.4e-18 Score=117.39 Aligned_cols=78 Identities=26% Similarity=0.358 Sum_probs=1.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++.+|.++. +++++++||++||++|.+ ..++| +++|||+|.|+.|+|+.+|++|+|.+| .+
T Consensus 1 M~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~g------st 66 (128)
T 3u5e_m 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHH-----HhCcC--hHHEEEEECCEECCCCCchhhhccCCC------CE
Confidence 47889999999998 999999999999999954 45676 599999999999999999999999987 48
Q ss_pred EEEEeCCCCchh
Q 033465 88 MHVVVQPPSTEK 99 (118)
Q Consensus 88 mhlv~~~~~~~~ 99 (118)
+||+++..++..
T Consensus 67 i~l~~rl~GG~~ 78 (128)
T 3u5e_m 67 LHLVLRLRGGII 78 (128)
T ss_dssp ----------CC
T ss_pred EEEEEEcCCCCC
Confidence 999999998864
No 67
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.64 E-value=1.7e-17 Score=119.92 Aligned_cols=79 Identities=27% Similarity=0.382 Sum_probs=0.0
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
|+|+|++.+|.++. +++++++||++||++|++ ..++| +++|||||+|+.|+|+.+|++|+|.++ .+
T Consensus 1 MqI~VK~l~G~~~~-l~V~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g------st 66 (152)
T 3u5c_f 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHH-----HhCCC--HHHEEEEECCEEccccCcHHHcCCCCC------CE
Confidence 57889999999998 999999999999999954 45676 599999999999999999999999977 48
Q ss_pred EEEEeCCCCchhh
Q 033465 88 MHVVVQPPSTEKA 100 (118)
Q Consensus 88 mhlv~~~~~~~~~ 100 (118)
+||++++.++.++
T Consensus 67 L~Lvlrl~GGgKk 79 (152)
T 3u5c_f 67 LHLVLRLRGGGKK 79 (152)
T ss_dssp -------------
T ss_pred EEEEeeccCCCcC
Confidence 9999999999654
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=113.09 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=65.7
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
..+.|.|++.+|+++. +++++++||.+||++|... +++| +++|||||.|+.|+|+.+|++|+|+++
T Consensus 95 gg~~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~-----~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g------ 160 (172)
T 3u30_A 95 GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 160 (172)
T ss_dssp CCEEEEEEESSCCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBSGGGTCCTT------
T ss_pred ccccceeecccCccee-EEecCCCCHHHHHHHHHHH-----hCCC--ceeEEEEECCccCCCCCcHHHhCCCCC------
Confidence 4577888999999998 9999999999999999654 5677 599999999999999999999999987
Q ss_pred EEEEEEeCCCCc
Q 033465 86 TTMHVVVQPPST 97 (118)
Q Consensus 86 ~tmhlv~~~~~~ 97 (118)
.++||++++.++
T Consensus 161 ~tl~l~~rlrgG 172 (172)
T 3u30_A 161 STLHLVLRLRGG 172 (172)
T ss_dssp CEEEECC-----
T ss_pred CEEEEEEecCCC
Confidence 489999998875
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.64 E-value=9.7e-16 Score=107.26 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=68.9
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
..+.|++++.+|+++. +++++++||++||++|.+. .++| +++|||+|.|+.|+|+.+|++|+|.++
T Consensus 75 ~~~~i~Vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~------ 140 (152)
T 3b08_A 75 GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 140 (152)
T ss_dssp TCEEEEEEESSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred cccceeeeecCCCEEE-EEeCCCCcHHHHHHHHHHH-----hCcC--hhhEEEEECCEECCCCCCHHHcCCCCC------
Confidence 3478889999999998 9999999999999999754 4676 599999999999999999999999987
Q ss_pred EEEEEEeCCCCc
Q 033465 86 TTMHVVVQPPST 97 (118)
Q Consensus 86 ~tmhlv~~~~~~ 97 (118)
.++|++++..|+
T Consensus 141 ~~i~l~~r~~GG 152 (152)
T 3b08_A 141 STLHLVLRLRGG 152 (152)
T ss_dssp CEEEEEECCCC-
T ss_pred CEEEEEEecCCC
Confidence 489999999875
No 70
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.64 E-value=7.4e-16 Score=105.47 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=62.5
Q ss_pred eeEEEEEeCCC--ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCC-CCCCCC
Q 033465 7 QLEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSP-LCDIPG 83 (118)
Q Consensus 7 ~i~i~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~-~~~~p~ 83 (118)
.++++|+...+ ..++ ++++|++||++||++|.+ .+++| +++|||||+|++|+|++||++|||. +|
T Consensus 24 ~l~v~v~d~~s~~~~i~-l~V~ps~TV~~LK~~I~~-----k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G---- 91 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIW-LTVRPDMTVASLKDMVFL-----DYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNG---- 91 (105)
T ss_dssp EEEEEEEESSSCCEEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTT----
T ss_pred EEEEEEEccCCCCceEE-EEECCcChHHHHHHHHHH-----HhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCC----
Confidence 36677777764 6887 999999999999999964 46787 5999999999999999999999994 66
Q ss_pred CeEEEEEEeCCC
Q 033465 84 GVTTMHVVVQPP 95 (118)
Q Consensus 84 ~~~tmhlv~~~~ 95 (118)
.++||++-..
T Consensus 92 --~t~hL~l~~~ 101 (105)
T 4dbg_A 92 --DSAYLYLLSA 101 (105)
T ss_dssp --CEEEEEECCC
T ss_pred --CEEEEEEEec
Confidence 3788887543
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=1.3e-15 Score=108.40 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=67.2
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE-e-CCeecCCCCcccccCCCCCCCCCCe
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI-S-AGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI-~-~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
++|+|++.+|+++. +++++++||++||++|++. .++| +++|||+ | +|+.|+|+.+|++|+|.++
T Consensus 3 m~i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~-----~gip--~~~QrL~~~~~g~~L~d~~tL~~y~i~~~------ 68 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQK-----IGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPG------ 68 (159)
T ss_dssp CEEEEEETTSCEEE-EECCTTCCHHHHHHHHHHH-----HCCC--GGGEEEEEETTCCBCCTTSCGGGGTCCTT------
T ss_pred eEEEEEECCCCEEE-EEeCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEEcCCCCCCCCCCCHHHcCCCCC------
Confidence 78999999999998 9999999999999999644 5677 5999999 9 8999999999999999987
Q ss_pred EEEEEEeCC-CCc
Q 033465 86 TTMHVVVQP-PST 97 (118)
Q Consensus 86 ~tmhlv~~~-~~~ 97 (118)
.++|++++. +++
T Consensus 69 ~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 69 STVLLVVDKSDEP 81 (159)
T ss_dssp CEEEEEECCCCCC
T ss_pred CEEEEEccCCCCc
Confidence 488999984 444
No 72
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=1.3e-15 Score=99.49 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=59.9
Q ss_pred EEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEE
Q 033465 11 KFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHV 90 (118)
Q Consensus 11 ~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhl 90 (118)
.+++.+|+++. +++++++||++||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+| .+++|
T Consensus 15 ~~~~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~l~l 80 (85)
T 2kd0_A 15 LTVKFGGKSIP-LSVSPDCTVKDLKSQLQPI-----TNVL--PRGQKLIFKGKVLVETSTLKQSDVGSG------AKLML 80 (85)
T ss_dssp EEEEETTEEEE-EEECTTSBHHHHHHHHHHH-----HCCC--TTTCEEEETTEECCTTCBTTTTTCCTT------EEEEE
T ss_pred EEEEECCEEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCeECCCcCCHHHCCCCCC------CEEEE
Confidence 44556899998 9999999999999999644 5676 599999999999999999999999977 47888
Q ss_pred EeCC
Q 033465 91 VVQP 94 (118)
Q Consensus 91 v~~~ 94 (118)
+..+
T Consensus 81 ~~s~ 84 (85)
T 2kd0_A 81 MASQ 84 (85)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 7654
No 73
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.60 E-value=2.3e-15 Score=121.75 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=71.7
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
...++|+||+.+|+++. ++|++++||.+||++|...| +.+++| +++|||||.||+|+|+.+|++|+|++++
T Consensus 5 ~~~M~I~VKtl~Gk~~~-leV~~~~TV~~LK~~I~~~~--~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs---- 75 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEK--GRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN---- 75 (368)
T ss_dssp -CCCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHT--CSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS----
T ss_pred CceEEEEEEeCCCCEEE-EEeCCCChHHHHHHHHHHHh--CcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC----
Confidence 45689999999999998 99999999999999998764 235676 5999999999999999999999999875
Q ss_pred eEEEEEEeCCCCch
Q 033465 85 VTTMHVVVQPPSTE 98 (118)
Q Consensus 85 ~~tmhlv~~~~~~~ 98 (118)
+.+|++.++.++.
T Consensus 76 -tIv~lv~k~~~~~ 88 (368)
T 1oqy_A 76 -FVVVMVTKTKAGQ 88 (368)
T ss_dssp -CEEEEEECCCSSS
T ss_pred -EEEEEEecCCCCC
Confidence 3558888887654
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.60 E-value=3.7e-15 Score=104.29 Aligned_cols=76 Identities=25% Similarity=0.378 Sum_probs=67.3
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++.+|+.+. +++++++||++||++|++. .++| +++|||+|.|+.|+|+.+|++|+|.++ .+
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gip--~~~q~L~~~g~~L~d~~tL~~~~i~~~------~~ 66 (152)
T 3b08_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (152)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCeECcCcccHHHhccCCC------Ce
Confidence 57899999999998 9999999999999999654 4666 599999999999999999999999987 38
Q ss_pred EEEEeCCCCc
Q 033465 88 MHVVVQPPST 97 (118)
Q Consensus 88 mhlv~~~~~~ 97 (118)
+|++.+..++
T Consensus 67 l~l~~~~~~~ 76 (152)
T 3b08_A 67 LHLVLRLRGG 76 (152)
T ss_dssp EEEEECCTTC
T ss_pred eEEEeecccc
Confidence 8998887765
No 75
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.59 E-value=3.1e-15 Score=98.53 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=61.0
Q ss_pred eeEEEEEe--CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe-------CCeecCCCCcccccCCC
Q 033465 7 QLEIKFRL--TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS-------AGKILENNRTLGECRSP 77 (118)
Q Consensus 7 ~i~i~~~~--~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~-------~Gk~L~D~~tL~~~~i~ 77 (118)
.|.|.|.. ..++..+ ..|++++||++||++|+ +.+++| +++||||| .|++|+|+++|++|+|.
T Consensus 2 ~V~v~iths~~~~~~~E-~r~~~s~TI~~lK~ki~-----~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~ 73 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPE-KRYGLAQTIESIKENVF-----THFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCR 73 (86)
T ss_dssp EEEEEEEETTCSCCEEE-EEEETTSBHHHHHHHHH-----TTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCC
T ss_pred EEEEEEEEcCCCCeEEE-EEcCccCcHHHHHHHHH-----HHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCC
Confidence 45666654 3444456 89999999999999994 567888 59999997 69999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCC
Q 033465 78 LCDIPGGVTTMHVVVQPP 95 (118)
Q Consensus 78 ~~~~p~~~~tmhlv~~~~ 95 (118)
+| .++||+-..+
T Consensus 74 ~g------~~ihlvd~~P 85 (86)
T 4b6w_A 74 DE------FVIHVVDLQP 85 (86)
T ss_dssp TT------CEEEEEECCC
T ss_pred CC------CEEEEEeCCC
Confidence 88 4899987644
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=1.5e-15 Score=101.16 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=63.4
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
.++.|+|+|+. .|+++. +++++++||.+||++|++. .++| +++|||+|.||.|+| .+|++|+|.++
T Consensus 14 ~~~~~~i~Vk~-~g~~~~-i~v~~~~TV~~LK~~I~~~-----tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g---- 79 (95)
T 1v86_A 14 GKELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIHSI-----TGLP--PAMQKVMYKGLVPED-KTLREIKVTSG---- 79 (95)
T ss_dssp CCCCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHHHH-----HCSC--STTCCCBSSSBCCSS-SBHHHHCCCTT----
T ss_pred CCceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCeeCCc-CcHHHCCCCCC----
Confidence 34668899985 688888 9999999999999999643 5677 599999999999955 49999999977
Q ss_pred CeEEEEEEeCCC
Q 033465 84 GVTTMHVVVQPP 95 (118)
Q Consensus 84 ~~~tmhlv~~~~ 95 (118)
.++||+....
T Consensus 80 --~~i~lv~~~~ 89 (95)
T 1v86_A 80 --AKIMVVGSTI 89 (95)
T ss_dssp --EEEEECCSSC
T ss_pred --CEEEEEeccc
Confidence 5788877653
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=95.66 Aligned_cols=72 Identities=13% Similarity=0.051 Sum_probs=59.5
Q ss_pred eeEEEEEeCCCceee-ee-ecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC--CeecCCCCcccccCCCCCCCC
Q 033465 7 QLEIKFRLTDGSDIG-PK-SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA--GKILENNRTLGECRSPLCDIP 82 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~-~~-~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~--Gk~L~D~~tL~~~~i~~~~~p 82 (118)
.++|+|++..|+.+. .+ +++|++||++||++|.+. .+++| +++|||+|. ||+|+|+.+|++|+|.++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~----~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~--- 80 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKT----HPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTT--- 80 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHH----CSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSE---
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHH----hcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCC---
Confidence 388999999887752 16 899999999999999753 24565 599999987 999999999999999976
Q ss_pred CCeEEEEE
Q 033465 83 GGVTTMHV 90 (118)
Q Consensus 83 ~~~~tmhl 90 (118)
.++|+
T Consensus 81 ---stl~~ 85 (88)
T 2dzj_A 81 ---ATLYF 85 (88)
T ss_dssp ---EEEEE
T ss_pred ---CEEEE
Confidence 46664
No 78
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.55 E-value=3.5e-16 Score=116.75 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=1.2
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
++|+|++++|+++. ++|++++||.+||++|. +.+++| +++|||||+|++|+|+.+|+ ++ +|
T Consensus 1 MqI~VKtL~Gktit-LeV~~sdTV~~LK~kI~-----~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~------ST 61 (189)
T 2xzm_9 1 MQVQVKTLEGETKI-YTLEQGTSVLDLKSQIS-----QDMGFE--IDMMTLVNNGFIAPNTELVT-----DD------VT 61 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEE-EEECCcChHHHHHHHHH-----HHhCcC--hhHEEEEecCeECCCCCccc-----CC------CE
Confidence 57899999999998 99999999999999994 557787 59999999999999999998 34 58
Q ss_pred EEEEeCCCCchh
Q 033465 88 MHVVVQPPSTEK 99 (118)
Q Consensus 88 mhlv~~~~~~~~ 99 (118)
+||++++.++.+
T Consensus 62 LhLvlRLrGG~~ 73 (189)
T 2xzm_9 62 YYLSLKLLGGKK 73 (189)
T ss_dssp ----------CC
T ss_pred EEEEEecCCCcc
Confidence 999999998865
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.55 E-value=9.7e-15 Score=115.79 Aligned_cols=78 Identities=24% Similarity=0.385 Sum_probs=67.3
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
....++|+|++.+|+++. +++++++||++||++|.+. .++| +++|||||.||.|+|+.+|++|+|.++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~-leV~~s~TV~dLK~kI~~~-----~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~g---- 297 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 297 (307)
T ss_dssp SCCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTGGGTCCTT----
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEeCCeecCCCCCHHHcCCCCC----
Confidence 456799999999999998 9999999999999999643 5676 599999999999999999999999987
Q ss_pred CeEEEEEEeCCC
Q 033465 84 GVTTMHVVVQPP 95 (118)
Q Consensus 84 ~~~tmhlv~~~~ 95 (118)
.++||++|++
T Consensus 298 --stL~LvlRLr 307 (307)
T 3ai5_A 298 --STLHLVLRLR 307 (307)
T ss_dssp --CEEEEEC---
T ss_pred --CEEEEEEeCC
Confidence 4889998863
No 80
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=7.4e-15 Score=99.46 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=66.1
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe--CCeecCCCCcccccCCCCCCCCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~--~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
.+.+.+++.+|+++. +++++++||++||++|+ +.+++| +++|||+| .|+ |+|+.+|++|+|+.|
T Consensus 8 ~m~~~~vk~~Gk~~~-v~v~~~~TV~~LK~~I~-----~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~g----- 73 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVD-VVLEDTCTVGEIKQILE-----NELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKN----- 73 (100)
T ss_dssp CEEEEEEECSSCEEE-EEEETTSBHHHHHHHHH-----HHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSE-----
T ss_pred ceEEEEEEeCCeEEE-EEECCCCcHHHHHHHHH-----HHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCC-----
Confidence 455566667899998 99999999999999995 457887 58999997 777 999999999999976
Q ss_pred eEEEEEEeCCCCchh
Q 033465 85 VTTMHVVVQPPSTEK 99 (118)
Q Consensus 85 ~~tmhlv~~~~~~~~ 99 (118)
.+|||+++...+..
T Consensus 74 -stL~lvl~~~~~~~ 87 (100)
T 2dzm_A 74 -NSLYVLTPDLPPPS 87 (100)
T ss_dssp -EEEEECCSSSCCCC
T ss_pred -CEEEEEecCCCCCc
Confidence 69999998877544
No 81
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.55 E-value=1e-14 Score=97.65 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=61.6
Q ss_pred CceeEEEEEeCCCc--eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC--Ce---e-cCCCCcccccCC
Q 033465 5 QDQLEIKFRLTDGS--DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA--GK---I-LENNRTLGECRS 76 (118)
Q Consensus 5 ~~~i~i~~~~~~g~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~--Gk---~-L~D~~tL~~~~i 76 (118)
.+.|.|.|+...+. .++ +++++++||++||++|. +.+++| +++|||||. |+ . ++|+++|++|+|
T Consensus 13 ~~~v~l~It~s~~~~~~~~-~~v~~~~TV~~LK~kI~-----~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i 84 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFE-VKLAKDLTVAQLKTKLE-----ILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYAN 84 (95)
T ss_dssp CCEEEEEEEESSCSCEEEE-EEEETTCBHHHHHHHHH-----HHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCC
T ss_pred CCeEEEEEEECCCCceEEE-EEeCccCHHHHHHHHHH-----HHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCc
Confidence 56788888876654 787 99999999999999995 457888 599999998 55 3 499999999999
Q ss_pred CCCCCCCCeEEEEEEe
Q 033465 77 PLCDIPGGVTTMHVVV 92 (118)
Q Consensus 77 ~~~~~p~~~~tmhlv~ 92 (118)
.+| .++||+-
T Consensus 85 ~~g------stihlvD 94 (95)
T 2kjr_A 85 SDG------LRLHVVD 94 (95)
T ss_dssp SSS------CEEEEEE
T ss_pred CCC------CEEEEEC
Confidence 987 4888863
No 82
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.54 E-value=1.8e-14 Score=96.87 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=64.4
Q ss_pred CCCCceeEEEEEeCCC--ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe---e----cCCCCccc
Q 033465 2 ASVQDQLEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK---I----LENNRTLG 72 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk---~----L~D~~tL~ 72 (118)
+-+++.|.|.|..... ..++ ++|++++||++||++|. +.+++| +++|||||.|+ . ++|+++|+
T Consensus 9 ~~~~~~v~l~It~s~~~~~~~e-~~v~~~~TV~~LK~kIe-----~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~ 80 (97)
T 2kj6_A 9 SHGDDSVHLHITHANLKSFSAD-ARFSPQMSVEAVKEKLW-----KKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLG 80 (97)
T ss_dssp CCCCCCEEEEEEETTSSCCCEE-EEECTTCCHHHHHHHHH-----HHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHH
T ss_pred cCCCceEEEEEEECCCCceEEE-EEeCCCChHHHHHHHHH-----HHHCcC--HHHeEEEEecCCCcccceecCCcCCHH
Confidence 3467889999987554 4677 99999999999999995 457888 59999999983 3 59999999
Q ss_pred ccCCCCCCCCCCeEEEEEEeC
Q 033465 73 ECRSPLCDIPGGVTTMHVVVQ 93 (118)
Q Consensus 73 ~~~i~~~~~p~~~~tmhlv~~ 93 (118)
+|+|.+| .++||+-.
T Consensus 81 ~Y~I~~g------~~Ihlvd~ 95 (97)
T 2kj6_A 81 FFSPFDG------FRLHIIDL 95 (97)
T ss_dssp HHCCCSC------CEEEEEEC
T ss_pred HCCCCCC------CEEEEEeC
Confidence 9999987 47888753
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=3.3e-14 Score=94.99 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=71.3
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p 82 (118)
...+.|+|+|+..+|+.+. +.+.+++++..|++++.+ ..++| ++++||||.|+.|++++|+++|++.++|
T Consensus 3 ~~~~~i~ikVk~~~g~~i~-~~v~~~t~l~kl~~~y~~-----~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD-- 72 (94)
T 2io1_B 3 HMNDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCE-----RQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED-- 72 (94)
T ss_dssp ---CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTC--
T ss_pred CCCCeEEEEEECCCCCEEE-EEECCCCHHHHHHHHHHH-----HhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC--
Confidence 3456799999999999998 999999999999999964 45666 5899999999999999999999999986
Q ss_pred CCeEEEEEEeCCCCch
Q 033465 83 GGVTTMHVVVQPPSTE 98 (118)
Q Consensus 83 ~~~~tmhlv~~~~~~~ 98 (118)
+||++++..++.
T Consensus 73 ----~Idv~~~~~GG~ 84 (94)
T 2io1_B 73 ----TIDVFQQQTGGV 84 (94)
T ss_dssp ----EEEEEECCEESC
T ss_pred ----EEEEEEeccCCC
Confidence 889999988773
No 84
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=1e-13 Score=91.99 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=62.2
Q ss_pred CCCceeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC---ee----cCCCCccccc
Q 033465 3 SVQDQLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG---KI----LENNRTLGEC 74 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G---k~----L~D~~tL~~~ 74 (118)
+.-+.|.|.|+..... .++ +++++++||++||++|+ +.+++| +++|||+|.| +. |+|+.+|++|
T Consensus 3 ~~~~~v~l~I~~~~~~~~~~-~~v~~~~TV~~lK~ki~-----~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y 74 (95)
T 1v6e_A 3 SGSSGVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLE-----LVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSY 74 (95)
T ss_dssp SCCCCEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHH-----HHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSS
T ss_pred CCCcEEEEEEEECCCCeeEE-EEcCccCHHHHHHHHHH-----HHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHC
Confidence 4455688888875543 577 99999999999999995 446787 5999999987 43 5899999999
Q ss_pred CCCCCCCCCCeEEEEEEeC
Q 033465 75 RSPLCDIPGGVTTMHVVVQ 93 (118)
Q Consensus 75 ~i~~~~~p~~~~tmhlv~~ 93 (118)
+|.+| .++||+..
T Consensus 75 ~i~~g------~~l~v~d~ 87 (95)
T 1v6e_A 75 PVDDG------CRIHVIDH 87 (95)
T ss_dssp SCCTT------CEEEEBCC
T ss_pred CCCCC------CEEEEEEC
Confidence 99987 37888753
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=5e-14 Score=95.59 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=65.6
Q ss_pred CCCCceeEEEEEeCCCceeeeeecC-CcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe-----------e----c
Q 033465 2 ASVQDQLEIKFRLTDGSDIGPKSFP-AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK-----------I----L 65 (118)
Q Consensus 2 ~~~~~~i~i~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk-----------~----L 65 (118)
+++.+.|.|+||+.+|.. . ++++ +++||.+||++|.+. .++| +++|||+|.|+ . +
T Consensus 2 ~~~~~~M~irvrs~~G~~-~-v~v~~~~~Tv~~LK~kI~~~-----~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l 72 (107)
T 1wf9_A 2 SSGSSGTMLRVRSRDGLE-R-VSVDGPHITVSQLKTLIQDQ-----LQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMA 72 (107)
T ss_dssp CSSCCCEEEEEECSSCEE-E-EEECCTTSBHHHHHHHHHHH-----SCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSC
T ss_pred CCCCCeEEEEEECCCCCE-E-EEECCCCCcHHHHHHHHHHH-----hCcC--cccCEEEECCccccccCccccccccccC
Confidence 355667999999999976 5 8999 999999999999644 5676 59999999998 4 6
Q ss_pred CCCCcccccCCCCCCCCCCeEEEEEEeCC
Q 033465 66 ENNRTLGECRSPLCDIPGGVTTMHVVVQP 94 (118)
Q Consensus 66 ~D~~tL~~~~i~~~~~p~~~~tmhlv~~~ 94 (118)
+|+.+|++|||..|+ ++||+...
T Consensus 73 ~d~~tL~~~gi~~G~------~L~l~~~~ 95 (107)
T 1wf9_A 73 DPNLRISSLNLAHGS------MVYLAYEG 95 (107)
T ss_dssp CTTCBGGGTCCCTTC------EEECCCSS
T ss_pred CCCCCHHHCCCCCCC------EEEEEeCC
Confidence 899999999999885 78887764
No 86
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=4.6e-13 Score=89.05 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=70.7
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
+.|+|+|+..+|+.+. +.+.+++++..|++++.++ .++| ++++||+|.|+.|.+++|++++++.+||
T Consensus 4 ~~i~ikVk~~~g~~v~-~~vk~~t~l~kl~~~y~~~-----~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD----- 70 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED----- 70 (91)
T ss_dssp CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHH-----TTCC--STTEEEEETTEECCTTCCTTTTTCCTTE-----
T ss_pred CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence 5699999999999998 9999999999999999644 5665 5899999999999999999999999885
Q ss_pred EEEEEEeCCCCch
Q 033465 86 TTMHVVVQPPSTE 98 (118)
Q Consensus 86 ~tmhlv~~~~~~~ 98 (118)
+|+++++..++.
T Consensus 71 -~Idv~~~q~gg~ 82 (91)
T 2io0_B 71 -TIDVFQQQTGGV 82 (91)
T ss_dssp -EEEEEECCCCCC
T ss_pred -EEEEEEeccCCc
Confidence 889999988764
No 87
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.43 E-value=6.1e-13 Score=92.16 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=61.6
Q ss_pred eeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC---ee----cCCCCcccccCCCC
Q 033465 7 QLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG---KI----LENNRTLGECRSPL 78 (118)
Q Consensus 7 ~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G---k~----L~D~~tL~~~~i~~ 78 (118)
.|.|.|+...+. .++ +.+++++||++||++|. ...++| +++|||+|.| +. ++|+.+|++|||.+
T Consensus 6 ~v~l~V~~~~~~~~~e-~~v~~~~TV~~lK~ki~-----~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~ 77 (122)
T 1t0y_A 6 VYDLEITTNATDFPME-KKYPAGMSLNDLKKKLE-----LVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD 77 (122)
T ss_dssp EEEEEEEESSCCSCEE-EEEETTSBHHHHHHHHH-----HHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCS
T ss_pred EEEEEEEECCCCccEE-EEeCCCCcHHHHHHHHH-----HHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCC
Confidence 688888775543 576 89999999999999995 457887 5999999987 43 58999999999997
Q ss_pred CCCCCCeEEEEEEeCCCC
Q 033465 79 CDIPGGVTTMHVVVQPPS 96 (118)
Q Consensus 79 ~~~p~~~~tmhlv~~~~~ 96 (118)
| .++||+...++
T Consensus 78 g------~~ihvvd~~p~ 89 (122)
T 1t0y_A 78 G------YRIHAVDVTGG 89 (122)
T ss_dssp S------EEEEEEECTTC
T ss_pred C------CEEEEEeCCCC
Confidence 7 58998874433
No 88
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.39 E-value=1.4e-12 Score=86.80 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=67.9
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
...|.|+++..+|+.+. +.+.+++++..|++++.++ .+++ ++++||+|.|+.|.+++|+++|++.++|
T Consensus 15 ~~~i~ikV~~~~g~~i~-~~v~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD---- 82 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED---- 82 (93)
T ss_dssp CCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEEE-EEEccCCHHHHHHHHHHHH-----hCCC--ccceEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 45799999999999998 9999999999999999644 5665 5899999999999999999999999885
Q ss_pred eEEEEEEeCCCCc
Q 033465 85 VTTMHVVVQPPST 97 (118)
Q Consensus 85 ~~tmhlv~~~~~~ 97 (118)
+||++++..|+
T Consensus 83 --~Idv~~~q~GG 93 (93)
T 2d07_B 83 --TIDVFQQQTGG 93 (93)
T ss_dssp --EEEEEECC---
T ss_pred --EEEEEeeccCC
Confidence 88999887664
No 89
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.9e-12 Score=88.07 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=71.0
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
.+.|+|+|+..+|+.+. +.+.+++++..|++++.++ .+++ ++++||+|.|+.|.+++|+++|++.++|
T Consensus 22 ~~~I~IkVk~~~g~~i~-~kVk~~t~l~kL~~~y~ek-----~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD---- 89 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED---- 89 (104)
T ss_dssp SCCEEEEEECSSSCEEE-EEECTTSCHHHHHHHHHHH-----HTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEEE-EEEcCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 45799999999999998 9999999999999999644 5665 5899999999999999999999999885
Q ss_pred eEEEEEEeCCCCch
Q 033465 85 VTTMHVVVQPPSTE 98 (118)
Q Consensus 85 ~~tmhlv~~~~~~~ 98 (118)
+||++++..++.
T Consensus 90 --~Idv~~~q~GG~ 101 (104)
T 1wz0_A 90 --TIDVFQQQTSGP 101 (104)
T ss_dssp --EEEECCCCCCCS
T ss_pred --EEEEEEeccCCC
Confidence 889999888764
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.34 E-value=3.7e-12 Score=80.71 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=62.4
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t 87 (118)
|+|+++..+|+.+. +.+.+++++..|++++.++ .++| ++++||+|.|+.|.+++|++++++.+|| +
T Consensus 2 i~lkV~~~~g~~v~-~~v~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD------~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED------T 67 (72)
T ss_dssp EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHHH-----HTCC--TTTCEEEETTEECCTTCCTTTTTCCTTE------E
T ss_pred EEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC------E
Confidence 78999999999998 9999999999999999643 5665 5899999999999999999999999885 6
Q ss_pred EEEE
Q 033465 88 MHVV 91 (118)
Q Consensus 88 mhlv 91 (118)
+|+.
T Consensus 68 Idv~ 71 (72)
T 1wm3_A 68 IDVF 71 (72)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 91
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.33 E-value=1e-12 Score=104.42 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=62.9
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE---eCCeecCCCCcccccCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI---SAGKILENNRTLGECRSPLCDI 81 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI---~~Gk~L~D~~tL~~~~i~~~~~ 81 (118)
.+.|.|+|+. +|+++. +++++++||++||++|++ ..++| +++|||| |+|++|+|+.+|++|+|++|
T Consensus 3 ~~~i~i~Vk~-~g~~~~-v~v~~~~Tv~~lK~~I~~-----~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g-- 71 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYP-VDLTDQDTVEVLRHEIFR-----KTQVR--PERQKLLNLKYKGKTAADNVKISALELKPN-- 71 (320)
T ss_dssp -CEEEEEEEE-TTEEEE-EEEETTSBHHHHHHHHHH-----HHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC----
T ss_pred CceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHH-----HHCcC--HHHeEEeecccCCcccCccccHHHcCCCCC--
Confidence 4668888886 799998 999999999999999964 46787 5999999 89999999999999999987
Q ss_pred CCCeEEEEEEeCCC
Q 033465 82 PGGVTTMHVVVQPP 95 (118)
Q Consensus 82 p~~~~tmhlv~~~~ 95 (118)
.++||+-.+.
T Consensus 72 ----~~l~L~gs~~ 81 (320)
T 3shq_A 72 ----FKLMMVGSTE 81 (320)
T ss_dssp ----CEEEEECCCC
T ss_pred ----CEEEEEccch
Confidence 3777765543
No 92
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.32 E-value=6.8e-12 Score=81.00 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=64.6
Q ss_pred CCCceeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465 3 SVQDQLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~ 81 (118)
++++.|+|+++..+|+ .+. +.+.+++++..|++++.++ .+++ ++++||+|.|+.|.+++|++++++.+||
T Consensus 3 ~~~~~i~ikV~~~~g~~~i~-~~i~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD- 73 (79)
T 3a4r_A 3 LGSQELRLRVQGKEKHQMLE-ISLSPDSPLKVLMSHYEEA-----MGLS--GHKLSFFFDGTKLSGKELPADLGLESGD- 73 (79)
T ss_dssp TCCCCEEEEEECSSTTCEEE-EEECTTSCHHHHHHHHHHH-----HTCT--TCCCEEEETTEECCSCCCHHHHTCCTTC-
T ss_pred CCCCEEEEEEEeCCCCEEEE-EEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC-
Confidence 3567799999999996 888 9999999999999999644 5665 5899999999999999999999999986
Q ss_pred CCCeEEEEE
Q 033465 82 PGGVTTMHV 90 (118)
Q Consensus 82 p~~~~tmhl 90 (118)
+||+
T Consensus 74 -----~Idv 77 (79)
T 3a4r_A 74 -----LIEV 77 (79)
T ss_dssp -----EEEE
T ss_pred -----EEEE
Confidence 6665
No 93
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.30 E-value=2.7e-12 Score=83.51 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=58.6
Q ss_pred eEEEEEeCCCceeeeee-cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eecC---CCCcccccCCCCCCC
Q 033465 8 LEIKFRLTDGSDIGPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILE---NNRTLGECRSPLCDI 81 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L~---D~~tL~~~~i~~~~~ 81 (118)
++|+||+.+|+.. ++ +++++||.+||++|.++ .++| +++|||+|++ |.|+ |+.+|++|||..|+
T Consensus 1 m~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~-----~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~- 70 (86)
T 2kzr_A 1 WRVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAI-----TGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGD- 70 (86)
T ss_dssp CCEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHH-----TCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTC-
T ss_pred CEEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHH-----hCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCC-
Confidence 4689999999665 67 99999999999999754 4566 5899999984 8874 78899999999874
Q ss_pred CCCeEEEEEEeCC
Q 033465 82 PGGVTTMHVVVQP 94 (118)
Q Consensus 82 p~~~~tmhlv~~~ 94 (118)
++||....
T Consensus 71 -----~l~v~~~~ 78 (86)
T 2kzr_A 71 -----MLIVEEDQ 78 (86)
T ss_dssp -----EEECCCCS
T ss_pred -----EEEEEeCC
Confidence 77876553
No 94
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.29 E-value=7.8e-12 Score=85.42 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=66.9
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
.+.|+|+|+. +|+.+. +.+.+++++..|++++.++ .+++ ++++||+|.|+.|.+++|++++++.++|
T Consensus 29 ~~~I~IkV~~-~g~~i~-fkIk~tt~l~kL~~ay~ek-----~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD---- 95 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKR-----QGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 95 (106)
T ss_dssp CSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEec-CCcEEE-EEeCCCCHHHHHHHHHHHH-----hCCC--cccEEEEECCeEcCCCCCHHHcCCCCCC----
Confidence 3569999999 999998 9999999999999999644 5665 5899999999999999999999999885
Q ss_pred eEEEEEEeCCCCc
Q 033465 85 VTTMHVVVQPPST 97 (118)
Q Consensus 85 ~~tmhlv~~~~~~ 97 (118)
+|+++++..|+
T Consensus 96 --~Idv~~~q~GG 106 (106)
T 2eke_C 96 --IIEAHREQIGG 106 (106)
T ss_dssp --EEEEEECC---
T ss_pred --EEEEEeecccC
Confidence 88999887664
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.29 E-value=4.2e-12 Score=87.24 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=69.9
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
..|.|+|+..+|+.+. +.+.+++++..|++++.++ .++| ++++||||.|+.|.+++|+++|++.++|
T Consensus 25 ~~I~IkVk~~~g~~i~-fkVk~~t~l~kL~~ay~ek-----~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD----- 91 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMF-FRIKSRTALKKLIDTYCKK-----QGIS--RNSVRFLFDGTPIDETKTPEELGMEDDD----- 91 (110)
T ss_dssp CCEEEEEEETTSCCEE-EEECTTSSHHHHHHHHHHH-----HTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEE-----
T ss_pred CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence 4599999999999998 9999999999999999643 5665 5899999999999999999999999885
Q ss_pred EEEEEEeCCCCch
Q 033465 86 TTMHVVVQPPSTE 98 (118)
Q Consensus 86 ~tmhlv~~~~~~~ 98 (118)
+|++++...++-
T Consensus 92 -~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 92 -VIDAMVEQTGGL 103 (110)
T ss_dssp -EEEEECCCCCC-
T ss_pred -EEEEEEcccCcc
Confidence 889999988764
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.00 E-value=2.9e-09 Score=70.43 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=60.5
Q ss_pred CCceeEEEEEe---CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC------ee-c-CCCCccc
Q 033465 4 VQDQLEIKFRL---TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG------KI-L-ENNRTLG 72 (118)
Q Consensus 4 ~~~~i~i~~~~---~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G------k~-L-~D~~tL~ 72 (118)
....|.|.|+. .+|..++ ..|++++||++||.+|+.. -++| ++.|||.|.+ .+ | +|..+|+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e-~~l~~~~TV~~LK~~i~~~-----~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~ 77 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSRL-----LKVP--VSELLLSYESSKMPGREIELENDLQPLQ 77 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHTT-----TTCC--TTTCEEEEECTTSCSCEEECCCSSSBSG
T ss_pred cCccEEEEEEecCCCCCcEEE-EECCCCCCHHHHHHHHHHH-----HCCC--hhHeEEEEEcCCCCceeeccCCCcccHh
Confidence 34568888875 4677887 9999999999999999643 4676 5999999873 22 4 7888999
Q ss_pred ccCCCCCCCCCCeEEEEEEeCC
Q 033465 73 ECRSPLCDIPGGVTTMHVVVQP 94 (118)
Q Consensus 73 ~~~i~~~~~p~~~~tmhlv~~~ 94 (118)
.|++.+|+ ++||....
T Consensus 78 ~y~i~~G~------~I~V~d~~ 93 (97)
T 1wjn_A 78 FYSVENGD------CLLVRWSG 93 (97)
T ss_dssp GGTCCTTC------EEEEECCS
T ss_pred hcCCCCCC------EEEEEecC
Confidence 99999885 77877643
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.91 E-value=6.8e-09 Score=71.81 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=65.7
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
+.|+|+|+..+|..+. |.+.+++++..|++.+.++ .+++ ++++||+|.|+.|.+++|.+++++.+||
T Consensus 39 ~~I~LKV~~qdg~ev~-fkIk~tt~L~KLm~aY~er-----~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD----- 105 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEED----- 105 (115)
T ss_dssp CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--TTSEEEEETTEECCTTCCTTTTTCCTTC-----
T ss_pred CeEEEEEEcCCCCEEE-EEEccCChHHHHHHHHHHH-----hCCC--hhhEEEEECCeECCCCCCHHHcCCCCCC-----
Confidence 5699999999999998 9999999999999999654 4554 6999999999999999999999999987
Q ss_pred EEEEEEeCC
Q 033465 86 TTMHVVVQP 94 (118)
Q Consensus 86 ~tmhlv~~~ 94 (118)
+|++.++-
T Consensus 106 -~IdV~~~Q 113 (115)
T 3kyd_D 106 -VIEVYQEQ 113 (115)
T ss_dssp -EEEEEECC
T ss_pred -EEEEEeec
Confidence 67777653
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.6e-08 Score=75.82 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=70.2
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
.+-|+|+|+ .+|..+. +.+.+++++..|++.+.+ +.++| .+++||+|.|+.|.+++|.+++++.+||
T Consensus 27 ~~~I~LkV~-~~g~~v~-fkIk~~t~l~kL~~ay~e-----r~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD---- 93 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 93 (200)
T ss_dssp CCCEEEEEE-CSSCEEE-EEECTTSCTHHHHHHHHH-----HHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEe-cCCCEEE-EEEecCCHHHHHHHHHHH-----HhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 345899997 4899998 999999999999999964 45665 5999999999999999999999999985
Q ss_pred eEEEEEEeCCCCchhh
Q 033465 85 VTTMHVVVQPPSTEKA 100 (118)
Q Consensus 85 ~~tmhlv~~~~~~~~~ 100 (118)
+|+++++..++.+.
T Consensus 94 --~Idv~~~q~gg~kd 107 (200)
T 3pge_A 94 --IIEAHREQIGGGGE 107 (200)
T ss_dssp --EEEEEECCSCCC-C
T ss_pred --EEEEEeccCcCcCc
Confidence 88999999888764
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.69 E-value=3e-08 Score=74.36 Aligned_cols=81 Identities=11% Similarity=0.145 Sum_probs=70.7
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
.+.|+|+|+ .+|..+. |.|.+++++..|++.+.++ .+++ ++++||+|.|+.|.+++|.+++++.++|
T Consensus 55 ~e~InLKVk-~dG~eV~-FKIKrtTpL~KLmeAYcER-----qGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGD---- 121 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIF-FKIKKTTPLRRLMEAFAKR-----QGKE--MDSLTFLYDGIEIQADQTPEDLDMEDND---- 121 (207)
T ss_dssp CCEEEEEEE-CSSCEEE-EEEETTSCTHHHHHHHHHH-----TTCC--GGGSCEEETTEECCSSCCTTTTTCCTTE----
T ss_pred CCcEEEEEe-cCCCEEE-EEEccCChHHHHHHHHHHH-----hCCC--cccEEEEECCeecCCCCCHHHcCCCCCC----
Confidence 345899997 4899998 9999999999999999654 4565 5999999999999999999999999986
Q ss_pred eEEEEEEeCCCCchhh
Q 033465 85 VTTMHVVVQPPSTEKA 100 (118)
Q Consensus 85 ~~tmhlv~~~~~~~~~ 100 (118)
+|+++++..++...
T Consensus 122 --tIDV~leQ~GG~~~ 135 (207)
T 3tix_A 122 --IIEAHREQIGGLPS 135 (207)
T ss_dssp --EEEECCCCCTTGGG
T ss_pred --EEEEEEeccCCCcc
Confidence 89999999988654
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.40 E-value=3.4e-08 Score=74.94 Aligned_cols=80 Identities=11% Similarity=0.159 Sum_probs=1.8
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~ 84 (118)
.+.|+|+| ..+|..+. |.+.+++....|++.+. ++.+++ ++++||+|.|+.|.+++|.+++++.+||
T Consensus 19 ~e~InLKV-~qdGseV~-FKIKrtTpL~KLM~AYc-----ERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGD---- 85 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEEE-EEEccCChHHHHHHHHH-----HHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCC----
Confidence 34588899 77899998 99999999999999995 445665 5999999999999999999999999986
Q ss_pred eEEEEEEeCCCCchh
Q 033465 85 VTTMHVVVQPPSTEK 99 (118)
Q Consensus 85 ~~tmhlv~~~~~~~~ 99 (118)
+|+++++..|+..
T Consensus 86 --tIDV~leQ~GG~~ 98 (227)
T 3v7o_A 86 --IIEAHREQIGGLT 98 (227)
T ss_dssp ------------CCC
T ss_pred --EEEEEecccCCch
Confidence 7899998888854
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.31 E-value=1.4e-06 Score=58.19 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=42.9
Q ss_pred EeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCC
Q 033465 13 RLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSP 77 (118)
Q Consensus 13 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~ 77 (118)
.+..+..+. +.+.++.||..+|++|.+ .+++| +++|||||.||.|.=+......+++
T Consensus 19 ~~~~a~~h~-v~I~~~etv~~~ke~V~e-----qTgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 19 SLQQMTAHK-IYIHSYNTATIFHELVYK-----QTKII--SSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp ETTTTEEEE-EEEETTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEEECCCTTCBGGGSC
T ss_pred EcccceEEE-EEeccchHHHHHHHHHHH-----HhCCC--HHHHHHHhCCCccccCCCCccccCC
Confidence 345677777 999999999999999954 47887 5899999999977533333444444
No 102
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.17 E-value=5e-06 Score=62.00 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
..+.|+|+++. +|..+. +.+..++....|++...+ +.++| .+++||+|.|+.+.+++|..++.+.++|
T Consensus 18 ~~~~i~ikv~~-~~~~v~-~~i~~~~~l~kl~~~y~~-----~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d--- 85 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND--- 85 (209)
T ss_dssp CCSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHH-----HHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTE---
T ss_pred CCCcEEEEEEc-CCCEEE-EEEeeCCHHHHHHHHHHH-----hhCCC--hheEEEEECCEeccCCCChHHhhhcccc---
Confidence 45679999987 788887 999999999999999964 45665 5999999999999999999999999875
Q ss_pred CeEEEEEEeCCCCch
Q 033465 84 GVTTMHVVVQPPSTE 98 (118)
Q Consensus 84 ~~~tmhlv~~~~~~~ 98 (118)
+|++..+..++.
T Consensus 86 ---~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 86 ---IIEAHREQIGGS 97 (209)
T ss_dssp ---EEEEECSCTTCC
T ss_pred ---cchhhccccccc
Confidence 778888877753
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.10 E-value=2.2e-05 Score=52.51 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=59.0
Q ss_pred CCceeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 4 VQDQLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
..+.|.|+++-.+|. .+. +.+.++++...|.+...++ .+++ ++.+||+|.|+.|..++|.+++++.+||
T Consensus 22 ~~~~I~LkV~~~dg~~~v~-fkIk~~t~l~kLm~aY~~~-----~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLE-VSLSRDSPLKTLMSHYEEA-----MGLS--GRKLSFFFDGTKLSGRELPADLGMESGD 91 (97)
T ss_dssp SCSEEEEEEEESSSSCEEE-EEEETTSCHHHHHHHHHHH-----TTCS--SSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred CCCeEEEEEEcCCCCEEEE-EEECCCChHHHHHHHHHHH-----HCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 346689999988885 777 9999999999999998755 2343 5899999999999999999999999986
No 104
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.09 E-value=4.1e-07 Score=73.41 Aligned_cols=82 Identities=11% Similarity=0.151 Sum_probs=2.0
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~ 83 (118)
..+.|+|+|+. +|..+. +.+.++++...|++...+ ..+++ ++++||+|.|+.|.+++|.+++++.+||
T Consensus 18 ~~~~I~LKV~~-~g~~v~-FkIk~~t~l~kLm~aY~~-----r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD--- 85 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND--- 85 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEE-EEEecCChHHHHHHHHHH-----HhCCC--cceEEEEECCeECCCCCChHHcCCCccc---
Confidence 34568888886 678887 999999999999999954 45555 5999999999999999999999999986
Q ss_pred CeEEEEEEeCCCCchhh
Q 033465 84 GVTTMHVVVQPPSTEKA 100 (118)
Q Consensus 84 ~~~tmhlv~~~~~~~~~ 100 (118)
+|++..+..+++..
T Consensus 86 ---~Idv~~~Q~g~~~~ 99 (360)
T 3ix6_A 86 ---IIEAHREQIGGMRT 99 (360)
T ss_dssp --------------CHH
T ss_pred ---hhhhhhccCchHHH
Confidence 78999999999874
No 105
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.08 E-value=3.2e-06 Score=54.38 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=47.3
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCee-----cCCCCcccccCCCCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI-----LENNRTLGECRSPLCD 80 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~-----L~D~~tL~~~~i~~~~ 80 (118)
.+.|+||..+|... +++++++|+.+|+++|++..+ ++. +.+.|.++-.. +.++.+|+++||..||
T Consensus 4 ~m~lRvrs~~G~~R--i~v~~~~t~~~L~~~I~~~~~-----i~~--~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd 73 (80)
T 2pjh_A 4 SIIIRVQSPDGVKR--ITATKRETAATFLKKVAKEFG-----FQN--NGFSVYINRNKTGEITASSSKSLHLLKIKHGD 73 (80)
T ss_dssp CCCCEEECSSEEEE--CCCCSSCCHHHHHHHHHHHTC-----CCT--TTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC
T ss_pred cEEEEEECCCCCEE--EEcCCcChHHHHHHHHHHHcC-----CCC--CcceEEecCCCCCcccCCCCCCHHHcCCCCCC
Confidence 47899999999555 789999999999999987643 332 33333222222 3477899999999897
No 106
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.02 E-value=5.8e-05 Score=49.00 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=55.0
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
|.+-++......+. +.+.++++|.+|=.....+ .++|. ...+||.|-|..|+.+.++++|.+.++|
T Consensus 10 ~~~~~~~~~~~dl~-f~I~~~t~v~kLi~ayc~~-----~~I~~-~~~IrllFDGdRLdp~~tp~DlemeD~D 75 (82)
T 3goe_A 10 ITLLLRSSKSEDLR-LSIPVDFTVKDLIKRYCTE-----VKISF-HERIRLEFEGEWLDPNDQVQSTELEDED 75 (82)
T ss_dssp EEEEEEESSSCCEE-EEEETTSBHHHHHHHHHHH-----HTCCC-CTTCEEEETTEECCTTSBGGGSSCCTTC
T ss_pred HHHhhhccCCCCeE-EEecCCCCHHHHHHHHHHH-----cCCCc-CceEEEEEcCcccCccCChhhhCCcCCc
Confidence 56667777777787 9999999999998887543 35663 3499999999999999999999999987
No 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.74 E-value=4e-06 Score=67.14 Aligned_cols=79 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~ 85 (118)
+.|.|+++. +|..+. |.+..+++...|++...++ .+.+ ..++||+|.|+.|.+++|.+++++.+||
T Consensus 29 ~~i~lkv~~-~~~~~~-~~i~~~~~~~~l~~~y~~~-----~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d----- 94 (389)
T 4da1_A 29 THINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKR-----QGKE--MDSLRFLYDGIRIQADQAPEDLDMEDND----- 94 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEE-EEECCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence 458888887 788887 9999999999999999544 4555 6999999999999999999999999986
Q ss_pred EEEEEEeCCCCchh
Q 033465 86 TTMHVVVQPPSTEK 99 (118)
Q Consensus 86 ~tmhlv~~~~~~~~ 99 (118)
+|++.+...++..
T Consensus 95 -~i~~~~~q~gg~n 107 (389)
T 4da1_A 95 -IIEAHREQIGGEN 107 (389)
T ss_dssp --------------
T ss_pred -Eeeeeeccccccc
Confidence 6777777776654
No 108
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.69 E-value=0.00055 Score=43.75 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=53.5
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeec---CCCCcccccCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL---ENNRTLGECRSPL 78 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L---~D~~tL~~~~i~~ 78 (118)
.++..+|.||+.+|.++. -.|..++||.+|.+.|... +.+ ....+|+ |-.|.| +.+.||.++|+..
T Consensus 4 ~~~~~~i~iRlpdG~r~~-~~F~~~~tl~~v~~fv~~~------~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p 74 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVASK------GFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP 74 (84)
T ss_dssp CCCEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHT------TCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCS
T ss_pred CCCeEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHc------CCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC
Confidence 467789999999999987 8999999999999999753 122 4677887 446777 4567999999985
Q ss_pred C
Q 033465 79 C 79 (118)
Q Consensus 79 ~ 79 (118)
.
T Consensus 75 ~ 75 (84)
T 3qx1_A 75 Q 75 (84)
T ss_dssp E
T ss_pred C
Confidence 4
No 109
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.59 E-value=0.0003 Score=46.95 Aligned_cols=67 Identities=9% Similarity=0.096 Sum_probs=57.3
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
...|+|+|+. +|..+. |.+-.++-..-|.+...++ .+.+ ++++||+|.|..+.++.|.+++++.++|
T Consensus 19 ~~~IniKV~~-~g~ev~-FkIK~tt~l~KL~~aYc~r-----~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~D 85 (95)
T 2l76_A 19 PRLFPLKIRC-RADLVR-LPLRMSEPLQSVVDHMATH-----LGVS--PSRILLLFGETELSPTATPRTLKLGVAD 85 (95)
T ss_dssp CCCEEEEEEC-SSSEEE-EEECSSSCTHHHHHHHHHH-----HTSC--GGGEEEEETTEECCTTSCHHHHTCCSSC
T ss_pred CCeEEEEEEc-CCcEEE-EEEecCChHHHHHHHHHhh-----cCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCC
Confidence 3449999994 787887 9999999999999998644 4543 6999999999999999999999999997
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.51 E-value=0.00027 Score=45.76 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=56.8
Q ss_pred eEEEEEe--CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 8 LEIKFRL--TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 8 i~i~~~~--~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
|+|++.+ -.|+++. +.++...||+.|++.+++...-+ ..+.+--++|..-.|.+|.++++|++|++.+||
T Consensus 5 I~ITidl~~y~~~~~D-LRIP~~~tvK~Li~~l~ea~~l~--~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 5 IDITIDLKHYNGSVFD-LRLSDYHPVKKVIDIAWQAQSVS--MPPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp EEEEEECTTTTCCEEE-EEEETTSBTTHHHHHHHHHSCCC--SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred EEEEEEeeccCCceEE-EECCCchhHHHHHHHHHHHhCCC--cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 5666665 5799999 99999999999999998764322 222221589999999999999999999999997
No 111
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.26 E-value=0.0021 Score=43.22 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=52.1
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecC---CCCcccccCCC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE---NNRTLGECRSP 77 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~---D~~tL~~~~i~ 77 (118)
+.+....|.||+.+|.++. -.|..++||.+|.+.|.... +.+ .....|+ |--|.|. .++||.++|+.
T Consensus 9 ~~~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~-----~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ 80 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFT-NQFPSDAPLEEARQFAAQTV-----GNT--YGNFSLATMFPRREFTREDYKRRLLDLELA 80 (109)
T ss_dssp CCSCCEEEEEECSSSCEEE-EEECTTSBHHHHHHHHHHHH-----TTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCS
T ss_pred CCCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhcc-----CCC--CCceEEEcCCCCcCCcccccCCCHHHCCCC
Confidence 4456799999999999998 99999999999999997652 111 2445565 3456775 36799999998
Q ss_pred C
Q 033465 78 L 78 (118)
Q Consensus 78 ~ 78 (118)
.
T Consensus 81 p 81 (109)
T 2dzk_A 81 P 81 (109)
T ss_dssp S
T ss_pred C
Confidence 5
No 112
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.17 E-value=0.0039 Score=41.82 Aligned_cols=68 Identities=12% Similarity=0.178 Sum_probs=53.2
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe--CCeecC--CCCcccccCCCC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGKILE--NNRTLGECRSPL 78 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~--~Gk~L~--D~~tL~~~~i~~ 78 (118)
+.+..++|.||+.+|.++. -.|..++||.+|...|..+ +. .....+|+. =.|.|. .+.||.++||..
T Consensus 19 ~~~~~~~IqiRlpdG~r~~-rrF~~~~tl~~v~~fv~~~------~~--~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p 89 (109)
T 2cr5_A 19 TAEEVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKV------GY--HKSLYRLSTSFPRRALEVEGGSSLEDIGITV 89 (109)
T ss_dssp SCSSEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHH------TC--CTTTEEEECSSSCCBCCCCSSCBHHHHTCSS
T ss_pred CCCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc------CC--CCCCeEEEeCCCCcCCCCCCCCCHHHcCCCC
Confidence 3456799999999999987 8999999999999999754 11 135677764 466775 468999999985
Q ss_pred C
Q 033465 79 C 79 (118)
Q Consensus 79 ~ 79 (118)
.
T Consensus 90 ~ 90 (109)
T 2cr5_A 90 D 90 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.17 E-value=0.0023 Score=44.18 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=52.8
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecCC-CCcccccCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILEN-NRTLGECRSPL 78 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~D-~~tL~~~~i~~ 78 (118)
+...+|.||+.+|.++. -.|..++||.+|++.|....|. .. .....|+ |-.|.|+| +.||.++|+..
T Consensus 50 ~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~----~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~p 119 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPA----MA--ATSFVLMTTFPNKELADENQTLKEANLLN 119 (127)
T ss_dssp SCCCCEEEEETTTTEEE-EECCSSCBHHHHHHHHHHHCSG----GG--TSCEEEEETTTTEECCSTTCBHHHHTCSS
T ss_pred CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHhCcC----CC--CCCeEEecCCCCCCCCCCCCcHHHCCCcC
Confidence 45689999999999998 9999999999999999876431 11 2456666 44678864 68999999984
No 114
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.09 E-value=0.0034 Score=49.49 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=52.6
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe------CCeecCCCCcccccCCCCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS------AGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~------~Gk~L~D~~tL~~~~i~~~~ 80 (118)
.+.|+|... +.+.. +.|+|++||+++..+|.++.|+... .+ .+.=-|.- .|+.|++.+||+.|++..++
T Consensus 3 ~~~~~~~~~-~~~~~-~~f~~~~~v~~~~~~i~e~~~~~~~-~~--~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~ 77 (371)
T 3ivf_A 3 ALSLKISIG-NVVKT-MQFEPSTMVYDACRMIRERIPEALA-GP--PNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGD 77 (371)
T ss_dssp CEEEEEEET-TEEEE-EEECTTCBHHHHHHHHHTTCGGGGS-SC--GGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTC
T ss_pred cEEEEEEec-ceeEE-EEECCCCCHHHHHHHHHHhcccccC-CC--HHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCc
Confidence 578888888 77787 9999999999999999998875311 11 12333333 37899999999999998775
No 115
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.92 E-value=0.0057 Score=42.08 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeec--C-CCCcccccCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL--E-NNRTLGECRSPL 78 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L--~-D~~tL~~~~i~~ 78 (118)
.+....|.||+.+|.++. -.|..++||.+|.+.|... +.+ ....+|+ |=.|.| + .+.||.++|+..
T Consensus 40 ~~~~t~IqIRlPdG~rl~-~rF~~~~tl~~V~~fV~~~------~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK------GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCP 110 (124)
T ss_dssp SSCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH------HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred CCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc------CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCC
Confidence 456799999999999988 9999999999999999653 122 2566776 457778 3 478999999975
Q ss_pred C
Q 033465 79 C 79 (118)
Q Consensus 79 ~ 79 (118)
.
T Consensus 111 s 111 (124)
T 1wj4_A 111 Q 111 (124)
T ss_dssp S
T ss_pred c
Confidence 3
No 116
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.89 E-value=0.0017 Score=45.35 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=51.0
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCC---------------------------------C--
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRT---------------------------------V-- 53 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~---------------------------------~-- 53 (118)
.|+|++.+|...+ +.||.+.+|.+++..|.... +++.. -
T Consensus 13 ~LkV~llDg~~kt-l~VD~S~~V~~lv~~Ic~ki-----gI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 86 (128)
T 2kc2_A 13 PLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARI-----GITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEK 86 (128)
T ss_dssp EEEEECTTSCEEE-EEEEECSSHHHHHHHHHHHH-----TCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCS
T ss_pred cEEEEcCCCCEEE-EEeCCCcCHHHHHHHHHHHh-----CCCCcccccccccccccccccCchhhccccccccchhHHHH
Confidence 4889999999999 99999999999999997642 12210 0
Q ss_pred CceEEEe--CCeecCCCCcccccCCCCCC
Q 033465 54 KDVKLIS--AGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 54 ~~~rLI~--~Gk~L~D~~tL~~~~i~~~~ 80 (118)
..+||-. .+.+|+++.+|.+.||.+++
T Consensus 87 ~k~kL~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 87 LKQKLHTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp SCCSCCCSSSEEEECSSSCHHHHTCCTTS
T ss_pred HHHHhcccCCCCcccCCCcHHHcCCCCCC
Confidence 2455532 35799999999999999875
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.38 E-value=0.056 Score=36.78 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=46.1
Q ss_pred eeEEEEEeCC--CceeeeeecCCcccHHHHHHHhhhhCCCcc--cCCCCCCCceEEEe----CCeecCCCC---------
Q 033465 7 QLEIKFRLTD--GSDIGPKSFPAATSVATLKESVLSQWPKEK--ENGPRTVKDVKLIS----AGKILENNR--------- 69 (118)
Q Consensus 7 ~i~i~~~~~~--g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~--~~~p~~~~~~rLI~----~Gk~L~D~~--------- 69 (118)
++.|.+.... +..+. +.+=.-+||.++|+||....=.+. ...| +++.+.|=+ +|++|.|.+
T Consensus 11 ~ltl~v~~~~~~~~~i~-vkVLdCDTItQvKeKiLd~vyk~~pyS~rP-~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 11 PLTVSVIVQDEGVDAIP-VKVLNCDTISQVKEKIIDQVYRGQPCSCWP-RPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp EEEEEEEETTSCCCCEE-EEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred EEEEEEEecCCCCCcee-eeeeccCcHHHHHHHHHHHHHcCCccccCC-CCCceeeEEecCCCCccccccCccceecCcc
Confidence 3455554433 33454 666688999999999986531111 1223 257787866 356776633
Q ss_pred ----cccccCCCCCCCCCCeEEEEEEe
Q 033465 70 ----TLGECRSPLCDIPGGVTTMHVVV 92 (118)
Q Consensus 70 ----tL~~~~i~~~~~p~~~~tmhlv~ 92 (118)
||+.|++++| .+|-++.
T Consensus 89 krLNTL~HY~V~dg------atl~l~~ 109 (111)
T 4e71_A 89 KRVNTLMHYNVRDG------ATLILSK 109 (111)
T ss_dssp CCCCBHHHHTCCTT------CEEEEEE
T ss_pred eEecchhhcCCCCC------CEEEEEe
Confidence 6777889987 3555544
No 118
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.09 E-value=0.14 Score=33.55 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=58.7
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~ 86 (118)
.+.+.|...+|++.. +.+.|++++.+|=+.--++ -++ ++++-.|-|++|.|+=+..+.-.||+.| .
T Consensus 9 ~m~v~Vl~~n~rr~~-VKvtp~t~L~~VL~eaC~K-----~gl--~~~~~~Lkh~~k~lDLSlpfRlsgLpnn------A 74 (90)
T 2al3_A 9 GSAVSVLAPNGRRHT-VKVTPSTVLLQVLEDTCRR-----QDF--NPSEYDLKFQRTVLDLSLQWRFANLPNN------A 74 (90)
T ss_dssp -CCEEEECTTSCEEE-ECCCTTSBHHHHHHHHHHH-----TTC--CGGGCEEEETTEEESSSCBHHHHCCCSS------C
T ss_pred ccEEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHH-----hCC--ChhhCeEEeCCEeccccceeEecCCCCC------C
Confidence 358889999999998 9999999999964444333 233 2578899999999998889999999977 4
Q ss_pred EEEEEeCCCCc
Q 033465 87 TMHVVVQPPST 97 (118)
Q Consensus 87 tmhlv~~~~~~ 97 (118)
.+-++.....+
T Consensus 75 kLELv~~s~s~ 85 (90)
T 2al3_A 75 KLEMVPVSRSR 85 (90)
T ss_dssp EEEEECSSSCC
T ss_pred EEEEEEccCCC
Confidence 66776655443
No 119
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.42 E-value=0.36 Score=33.52 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=44.3
Q ss_pred CceeeeeecCCcccHHHHHHHhhhhCCCcc--cCCCCCCCceEEEe----CCe-ecCCC-------------CcccccCC
Q 033465 17 GSDIGPKSFPAATSVATLKESVLSQWPKEK--ENGPRTVKDVKLIS----AGK-ILENN-------------RTLGECRS 76 (118)
Q Consensus 17 g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~--~~~p~~~~~~rLI~----~Gk-~L~D~-------------~tL~~~~i 76 (118)
+..+. +.+=.-+||.++|+||....=.+. ...| .++++.|=+ .|+ +|.|. -||..|++
T Consensus 16 ~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 16 MDSLS-VRAMDTDTLTQVKEKILEAFCKNVPYSQWP-RAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCEE-EEEETTSBHHHHHHHHHHHHSTTSCGGGSC-CGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCcee-eeeeccCchhhhhHHHHHHHhccCCcccCC-CCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 44454 666688999999999986531111 1233 267888866 344 47652 26778899
Q ss_pred CCCCCCCCeEEEEEEeCC
Q 033465 77 PLCDIPGGVTTMHVVVQP 94 (118)
Q Consensus 77 ~~~~~p~~~~tmhlv~~~ 94 (118)
++| .+|-++.+.
T Consensus 94 ~dg------atv~l~~~~ 105 (127)
T 3h6n_A 94 PEG------ASLAMSLID 105 (127)
T ss_dssp CTT------CEEEEEECC
T ss_pred CCC------CEEEEEEcc
Confidence 987 366666553
No 120
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.62 E-value=0.43 Score=33.56 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=43.1
Q ss_pred eeeeeecCCcccHHHHHHHhhhhCCCcc--cCCCCCCCceEEEe----CCe-ecCCCC-------------cccccCCCC
Q 033465 19 DIGPKSFPAATSVATLKESVLSQWPKEK--ENGPRTVKDVKLIS----AGK-ILENNR-------------TLGECRSPL 78 (118)
Q Consensus 19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~--~~~p~~~~~~rLI~----~Gk-~L~D~~-------------tL~~~~i~~ 78 (118)
.+. +.|=.-+||.++|+||....=.+. ...| .++++-|=+ +|+ +|.|.+ ||+-|++++
T Consensus 42 ~i~-VkVLdCDTItQvKeKiLDavYk~~PySqRP-~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 42 GVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGCC-CGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred cee-EEEeccccHHHHHHHHHHHHHcCCccccCC-CccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 454 677788999999999986410111 1233 256777755 355 476542 889999998
Q ss_pred CCCCCCeEEEEEEeCCC
Q 033465 79 CDIPGGVTTMHVVVQPP 95 (118)
Q Consensus 79 ~~~p~~~~tmhlv~~~~ 95 (118)
| .+|-++.+..
T Consensus 120 g------a~l~l~~~~~ 130 (138)
T 2r2o_A 120 G------ATVALVPCLT 130 (138)
T ss_dssp T------CEEEEEEC--
T ss_pred C------CEEEEEECCC
Confidence 7 3666665543
No 121
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.28 E-value=1.9 Score=27.55 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=38.0
Q ss_pred eeeeeecCCcccHHHHHHHhhhhCCCcccCC--C--CCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 19 DIGPKSFPAATSVATLKESVLSQWPKEKENG--P--RTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~--p--~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
..+ +++++..||.+|.+.+..++|.-.... + .-...+.+.-+|+.... +..+++||
T Consensus 28 ~~~-~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGD 87 (98)
T 1vjk_A 28 EEE-IELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGD 87 (98)
T ss_dssp EEE-EEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTC
T ss_pred eEE-EECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCC
Confidence 444 788888999999999988776322211 0 00246788889998864 45678886
No 122
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=90.49 E-value=0.76 Score=28.48 Aligned_cols=50 Identities=10% Similarity=0.217 Sum_probs=35.8
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNR 69 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~ 69 (118)
++|++++......+ +++++..||++|=+.+ ++| ++..-..-+|+++.-++
T Consensus 1 M~v~Vkl~g~~~~~-~ev~~g~Tv~dLL~~L---------gl~--~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 1 MNVTVEVVGEETSE-VAVDDDGTYADLVRAV---------DLS--PHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp CEEEEECSSSSEEE-EECSTTCSHHHHHHTT---------CCC--SSCCCEECCCCCCCTTS
T ss_pred CEEEEEEeCcccee-EEcCCCCcHHHHHHHc---------CCC--cceEEEEECCEECCHHH
Confidence 35677776444454 8999999999998877 344 35666788999886554
No 123
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=88.85 E-value=0.67 Score=31.21 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=33.0
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
.+.+.|.+.+.+|--+. +++..+.|+.++|+.+|++
T Consensus 17 ~~~v~v~~LlPnGi~i~-l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 17 PPRILVECLLPNGMIVT-LECLREATLITIKHELFKE 52 (108)
T ss_dssp CSEEEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHH
T ss_pred CCcEEEEEEcCcEEEEE-EEeeccccHHHHHHHHHHH
Confidence 46799999999999998 9999999999999999975
No 124
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.58 E-value=1.7 Score=29.59 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=39.9
Q ss_pred eecCCcccHHHHHHHhhhhCCCcc--cCCCCCCCceEEEe-CC---e-ecCCC-------------CcccccCCCCCCCC
Q 033465 23 KSFPAATSVATLKESVLSQWPKEK--ENGPRTVKDVKLIS-AG---K-ILENN-------------RTLGECRSPLCDIP 82 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~--~~~p~~~~~~rLI~-~G---k-~L~D~-------------~tL~~~~i~~~~~p 82 (118)
+.+=.-+||.++|+||....=.+. ...| .++++.|=+ .| + +|.|. -||+.|++++|
T Consensus 31 VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg--- 106 (117)
T 4e74_A 31 VKILNCDTITQVKEKILDAIFKNVPCSHRP-KAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG--- 106 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT---
T ss_pred eeeecCCchHHHHHHHHHHHhcCCCcccCC-CCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC---
Confidence 556678999999999986531111 1233 257787765 34 3 46552 25777889887
Q ss_pred CCeEEEEEEeC
Q 033465 83 GGVTTMHVVVQ 93 (118)
Q Consensus 83 ~~~~tmhlv~~ 93 (118)
.+|-++.+
T Consensus 107 ---atl~l~~~ 114 (117)
T 4e74_A 107 ---SVVALVSK 114 (117)
T ss_dssp ---CEEEEEEC
T ss_pred ---CEEEEEeC
Confidence 36666554
No 125
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.05 E-value=2 Score=27.47 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=37.2
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK 63 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk 63 (118)
+.+.||+... -++. +.+++..+..+|+++|.++.+ .| ++.++|-|.-+
T Consensus 4 ~~~~VKV~~~--~tva-irvp~~~~y~~L~~~l~~kL~-----l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK--YTVV-MKTQPGLPYSQVRDMVSKKLE-----LR--LEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS--SEEE-EEECTTCCHHHHHHHHHHHTT-----CC--GGGCCEEECCT
T ss_pred CcEEEEEEEE--EEEE-EECCCCCCHHHHHHHHHHHhC-----CC--cceeEEEeeCC
Confidence 3467777775 6888 999999999999999987753 33 47788887654
No 126
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=86.00 E-value=1.8 Score=28.65 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=32.2
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
....+.|+|-..+|.... +.|++++|+.+|-+.+..+
T Consensus 6 ~~~k~vvkvf~~Dgssks-i~V~~~~Ta~dv~~~L~~K 42 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRS-VEVAAGATARHVCEMLVQR 42 (100)
T ss_dssp CCSCEEEEEEETTSCEEE-EEECTTCCHHHHHHHHHCS
T ss_pred cCCCEEEEEEecCCCEEE-EEECCCCcHHHHHHHHHHH
Confidence 344588999999999999 9999999999999999753
No 127
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=85.72 E-value=4.6 Score=24.96 Aligned_cols=57 Identities=7% Similarity=0.097 Sum_probs=37.8
Q ss_pred ceeeeeecCCcccHHHHHHHhhhhCCCccc-CCC--CC-CCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 18 SDIGPKSFPAATSVATLKESVLSQWPKEKE-NGP--RT-VKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 18 ~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~-~~p--~~-~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
.... +++++..||++|.+.+..++|.-.. -.. .. ...+++.-+|+....+ ..+++||
T Consensus 18 ~~~~-~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gD 78 (89)
T 3po0_A 18 RTVR-VDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG-----EATAAGD 78 (89)
T ss_dssp SEEE-EECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT-----SBCCTTC
T ss_pred CeEE-EECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC-----cccCCCC
Confidence 4455 8888889999999999988763211 000 00 1247888899988753 4567776
No 128
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=85.47 E-value=6.9 Score=26.96 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=34.0
Q ss_pred eeeeeecCCcccHHHHHHHhhhhCCCcccCCCC--CCCceEEEe-CC---eecCCCC--------------cccccCCCC
Q 033465 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPR--TVKDVKLIS-AG---KILENNR--------------TLGECRSPL 78 (118)
Q Consensus 19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~--~~~~~rLI~-~G---k~L~D~~--------------tL~~~~i~~ 78 (118)
.+. +.+=.-+||.++|+||....=.. .+.|. .++.+.|=+ .| ++|.|.+ ||+-|++++
T Consensus 40 ~v~-VkVLdCDTItQVKEKILdavYk~-k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~D 117 (126)
T 3kuz_A 40 NIS-VNVLDCDTIGQAKEKIFQAFLSK-NGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISN 117 (126)
T ss_dssp EEE-EEEETTCBHHHHHHHHHHHHHHH-HSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCT
T ss_pred ceE-eeeecCCcHHHHHHHHHHHHhcc-CCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCC
Confidence 344 66668899999999998642100 12222 145666654 22 3444321 455678887
Q ss_pred C
Q 033465 79 C 79 (118)
Q Consensus 79 ~ 79 (118)
|
T Consensus 118 g 118 (126)
T 3kuz_A 118 G 118 (126)
T ss_dssp T
T ss_pred C
Confidence 7
No 129
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=85.27 E-value=4.5 Score=34.80 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=47.2
Q ss_pred eeEEEEEeCCC------ceeeeeecCCcccHHHHHHHhhhhCCCc--ccCCCCCCCceEEEe----CCe-ecCCCC----
Q 033465 7 QLEIKFRLTDG------SDIGPKSFPAATSVATLKESVLSQWPKE--KENGPRTVKDVKLIS----AGK-ILENNR---- 69 (118)
Q Consensus 7 ~i~i~~~~~~g------~~~~~~~v~~~~TV~~lK~~I~~~wp~~--~~~~p~~~~~~rLI~----~Gk-~L~D~~---- 69 (118)
++.|.+....| ..+. +.+=.-+||.++|+||...-=.+ ....| +++++.|=+ .|+ +|.|.+
T Consensus 257 ~ltL~v~~~~~~~~~~~~~i~-VkVLdCDTItQVKeKiLDavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 257 PLTLNALLAVGPGAGEAQGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp EEEEEEECC-------CCCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEeecCccccCCCCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCCcceEEeeCCCCceeecccCccce
Confidence 35555554433 2344 66668899999999998531001 11233 256777765 344 576644
Q ss_pred ---------cccccCCCCCCCCCCeEEEEEEeCC
Q 033465 70 ---------TLGECRSPLCDIPGGVTTMHVVVQP 94 (118)
Q Consensus 70 ---------tL~~~~i~~~~~p~~~~tmhlv~~~ 94 (118)
||+.|++++|. +|-++.+.
T Consensus 335 ~~~~wkrLNTL~HY~V~dga------~v~L~p~~ 362 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGA------TVALVPCL 362 (644)
T ss_dssp EETTEEECCBTTTTTCCTTC------EEEEEEC-
T ss_pred ecCcceeecchhhcCCCCCc------EEEEEecc
Confidence 88999999873 56665543
No 130
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=84.42 E-value=8.6 Score=28.03 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=43.7
Q ss_pred eEEEEEeCCC--ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEE--Ee-CCe--ecCC-CCcccccCCCCC
Q 033465 8 LEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL--IS-AGK--ILEN-NRTLGECRSPLC 79 (118)
Q Consensus 8 i~i~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL--I~-~Gk--~L~D-~~tL~~~~i~~~ 79 (118)
+.+++..... ..+. +.+...+||.+|++.+.+.. ++|. ....|| +| .++ .|+| +.||.+++|.++
T Consensus 128 ~~l~l~~~~~~~~~~~-~~~Sk~~ti~~l~~~~~~~~-----~i~~-~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~ 200 (217)
T 4a3p_A 128 TELKLCENGNMNNVVT-RRFSKADTIDTIEKEIRKIF-----SIPD-EKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQG 200 (217)
T ss_dssp EEEEEEETTEEEEEEE-EEECTTSBHHHHHHHHHHHT-----TCCT-TSCEEEEEEEETTEEEECCCTTSBHHHHTCCTT
T ss_pred cEEEEEecCCCCcceE-EEEcccchHHHHHHHHHHHh-----CCCC-CCceEEEEecCCCCeeecCCCCCCHHHhCCCCC
Confidence 3445544332 2244 77899999999999997653 3543 236888 44 333 6666 469999999987
Q ss_pred C
Q 033465 80 D 80 (118)
Q Consensus 80 ~ 80 (118)
.
T Consensus 201 Q 201 (217)
T 4a3p_A 201 Q 201 (217)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=84.32 E-value=6 Score=26.33 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=28.0
Q ss_pred ceeEEEEEeC------CC--ceeeeeecCC---cccHHHHHHHhhhhCCCcc
Q 033465 6 DQLEIKFRLT------DG--SDIGPKSFPA---ATSVATLKESVLSQWPKEK 46 (118)
Q Consensus 6 ~~i~i~~~~~------~g--~~~~~~~v~~---~~TV~~lK~~I~~~wp~~~ 46 (118)
+++.|++++. .| +.++ ++++. ..||.+|-+.|.+++|...
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~-vel~~~~~~~TV~~Ll~~L~~~~~~~~ 60 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQ-VALPGQEEPWDIRNLLVWIKKNLLKER 60 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEE-EEECCCSSCCBHHHHHHHHTTTTCCSC
T ss_pred CCcEEEEEEchHHHHHhCCceEEE-EEeCCCCCCCCHHHHHHHHHHHccchh
Confidence 4577777763 23 2454 77773 3699999999999887653
No 132
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=83.76 E-value=6.4 Score=33.75 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=47.9
Q ss_pred eeEEEEEeCCC---ceeeeeecCCcccHHHHHHHhhhhCCCc--ccCCCCCCCceEEEe----CCe-ecCCC--------
Q 033465 7 QLEIKFRLTDG---SDIGPKSFPAATSVATLKESVLSQWPKE--KENGPRTVKDVKLIS----AGK-ILENN-------- 68 (118)
Q Consensus 7 ~i~i~~~~~~g---~~~~~~~v~~~~TV~~lK~~I~~~wp~~--~~~~p~~~~~~rLI~----~Gk-~L~D~-------- 68 (118)
++.|.+...+| ..+. +.|=.-+||.++|+||...-=.+ ....| +++++.|=+ .|+ +|.|.
T Consensus 233 ~ltL~v~~~~~~~~~~i~-vkVLdCDTItQVKeKiLdavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 233 TLTLHCVCPESEGSAQVP-VKVLNCDSITQAKDKLLDTVYKGIPYSQRP-KAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp EEEEEEECTTTC--CEEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred eEEEEEeccCCCCCCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCccceeEeeCCCCceeeccCCccccccC
Confidence 34555544433 3344 66668899999999998531001 11234 367777755 344 56552
Q ss_pred -----CcccccCCCCCCCCCCeEEEEEEeCC
Q 033465 69 -----RTLGECRSPLCDIPGGVTTMHVVVQP 94 (118)
Q Consensus 69 -----~tL~~~~i~~~~~p~~~~tmhlv~~~ 94 (118)
-||+.|++++| .+|-++.+.
T Consensus 311 ~wkrLNTL~HY~V~Dg------a~v~L~p~~ 335 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDG------SLVALVPKQ 335 (627)
T ss_dssp TEEECCBTTTTTCCTT------CEEEEEEC-
T ss_pred ceeEecchhhcCCCCC------ceEEEEecc
Confidence 26888999987 366666554
No 133
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=82.37 E-value=6.8 Score=35.61 Aligned_cols=85 Identities=16% Similarity=0.229 Sum_probs=58.5
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCc-ccCCCCCCCceEEEeCCe-----ec-CCCCcccccC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKE-KENGPRTVKDVKLISAGK-----IL-ENNRTLGECR 75 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~-~~~~p~~~~~~rLI~~Gk-----~L-~D~~tL~~~~ 75 (118)
+.++.|.|.|.+.+|..+. +++..+.|+.++|+.||++-... ....-.++++-.|.+-.+ .+ ++.+.|.+++
T Consensus 47 ~~~~~v~vd~LLPnGi~i~-~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~ 125 (1092)
T 2y3a_A 47 ASDGAISVDFLLPTGIYIQ-LEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVR 125 (1092)
T ss_dssp SCCSEEEEEEECTTCCEEE-EEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGC
T ss_pred CCCCceEEEEECCCceEEE-EEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeec
Confidence 3557799999999999998 99999999999999999761110 111112357777777332 24 5567888886
Q ss_pred CCCCCCCCCeEEEEEEeCCC
Q 033465 76 SPLCDIPGGVTTMHVVVQPP 95 (118)
Q Consensus 76 i~~~~~p~~~~tmhlv~~~~ 95 (118)
.-. -.+.++-+..
T Consensus 126 ~~~-------p~l~lve~~~ 138 (1092)
T 2y3a_A 126 PFL-------PVLKLVTRSC 138 (1092)
T ss_dssp BSS-------SCEEEEESCC
T ss_pred ccc-------eEEEEEecCC
Confidence 542 2567766643
No 134
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=81.11 E-value=14 Score=27.35 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=54.6
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe---CCe--ecCCCCcccccCCCCCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS---AGK--ILENNRTLGECRSPLCDI 81 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~---~Gk--~L~D~~tL~~~~i~~~~~ 81 (118)
+|.++|.+.+| +++ +.+++++|+.+|=+.|.+. -++.. .+..=|.| .|. .|+.++.|.+.++..+
T Consensus 1 ~i~~~V~l~d~-~~~-~~v~~~tt~~el~~~v~~~-----l~L~e-~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~-- 70 (294)
T 1ef1_A 1 TISVRVTTMDA-ELE-FAIQPNTTGKQLFDQVVKT-----IGLRE-VWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKE-- 70 (294)
T ss_dssp CEEEEEEETTE-EEE-EEECTTCBHHHHHHHHHHH-----HTCCC-GGGEEEEEEBTTSCEEECCSSSBGGGSCBCCC--
T ss_pred CEEEEEEECCc-eEE-EEECCCCcHHHHHHHHHHH-----cCCCC-cceeEEEEECCCCceeecccccCHHhhccCCC--
Confidence 47889999998 788 9999999999999999764 23322 34555554 233 6788888887765433
Q ss_pred CCCeEEEEEEeCCCCc
Q 033465 82 PGGVTTMHVVVQPPST 97 (118)
Q Consensus 82 p~~~~tmhlv~~~~~~ 97 (118)
.+..+++-++--..
T Consensus 71 --~~~~l~fr~kf~~~ 84 (294)
T 1ef1_A 71 --SPLLFKFRAKFYPE 84 (294)
T ss_dssp --SSEEEEEEESSCCS
T ss_pred --CCEEEEEEEEEECC
Confidence 23567777765444
No 135
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=79.07 E-value=9.9 Score=24.12 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=20.4
Q ss_pred ceeeeeecC--CcccHHHHHHHhhhhCCCc
Q 033465 18 SDIGPKSFP--AATSVATLKESVLSQWPKE 45 (118)
Q Consensus 18 ~~~~~~~v~--~~~TV~~lK~~I~~~wp~~ 45 (118)
...+ ++++ +..||++|.+.+.++.|..
T Consensus 20 ~~~~-~~l~~~~~~Tv~~L~~~L~~~~~~~ 48 (99)
T 2qjl_A 20 RVHK-IKMDKEDPVTVGDLIDHIVSTMINN 48 (99)
T ss_dssp CEEE-EEECSCSCCBHHHHHHHHHHHTCSS
T ss_pred cEEE-EecCCCCCCcHHHHHHHHHHHCchh
Confidence 3444 6666 6789999999999887643
No 136
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=78.61 E-value=8.3 Score=23.00 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=38.6
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+++-..+.. + ++++...||.+|.+.+. .+ ...+.+..+|+++..+. .+++||
T Consensus 5 m~i~vNg~~~~~-~-~~~~~~~tv~~Ll~~l~---------~~--~~~v~vavN~~~v~~~~-----~L~~gD 59 (70)
T 1ryj_A 5 MKFTVITDDGKK-I-LESGAPRRIKDVLGELE---------IP--IETVVVKKNGQIVIDEE-----EIFDGD 59 (70)
T ss_dssp EEEEEEETTEEE-E-EEESSCCBHHHHHHHTT---------CC--TTTEEEEETTEECCTTS-----BCCTTC
T ss_pred EEEEEeCccCce-e-EECCCCCcHHHHHHHhC---------CC--CCCEEEEECCEECCCcc-----cCCCCC
Confidence 666665544333 3 67788899999999882 22 35677899999997655 567776
No 137
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=78.03 E-value=16 Score=27.42 Aligned_cols=81 Identities=9% Similarity=-0.018 Sum_probs=56.0
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe--CCe--ecCCCCcccccCCCCCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGK--ILENNRTLGECRSPLCD 80 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~--~Gk--~L~D~~tL~~~~i~~~~ 80 (118)
...+.++|.+.+| +++ +.+++++|+.+|=+.|.+.. ++.. .+..=|.| .|. .|+.++.|.+.+.+.+
T Consensus 20 ~~~~~~~V~lldg-~~~-~~v~~~t~~~el~~~v~~~l-----~L~e-~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~- 90 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EME-FNCEMKWKGKDLFDLVCRTL-----GLRE-TWFFGLQYTIKDTVAWLKMDKKVLDHDVSKE- 90 (314)
T ss_dssp -CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHH-----TCCC-GGGEEEEEEETTEEEECCTTSBGGGSSCCCS-
T ss_pred CCeeEEEEEeCCc-eEE-EEeCCCCcHHHHHHHHHHHh-----CCCC-CccceEEEEeCCcCeeCCCccCHHHcCCCCC-
Confidence 3568899999999 888 99999999999999987542 3332 35555555 343 6888888888765433
Q ss_pred CCCCeEEEEEEeCCCCc
Q 033465 81 IPGGVTTMHVVVQPPST 97 (118)
Q Consensus 81 ~p~~~~tmhlv~~~~~~ 97 (118)
.+..+++-++--..
T Consensus 91 ---~~~~l~fr~kf~~~ 104 (314)
T 1h4r_A 91 ---EPVTFHFLAKFYPE 104 (314)
T ss_dssp ---SSEEEEEEESSCCS
T ss_pred ---CCEEEEEEEEEecC
Confidence 23567776665433
No 138
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=77.21 E-value=9.4 Score=22.85 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=37.5
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
.|++++...-.-+.+++ +..||++|.+.+..+ | +.... ....++.-+|+.+.+. +..+++||
T Consensus 2 ~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~-~-~l~~~---l~~~~vavN~~~v~~~----~~~l~~gD 63 (74)
T 3rpf_C 2 MVEVRFFGPIKEENFFI-KANDLKELRAILQEK-E-GLKEW---LGVCAIALNDHLIDNL----NTPLKDGD 63 (74)
T ss_dssp EEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTC-T-TTTTT---TTTCEEEESSSEECCT----TCCCCTTC
T ss_pred EEEEEEEeecceeEEee-CCCcHHHHHHHHHHC-c-CHHHH---hhccEEEECCEEcCCC----CcCCCCCC
Confidence 35555544322122677 678999999999754 2 12111 2567788888886432 34577776
No 139
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=75.45 E-value=6.4 Score=23.64 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=32.8
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++ ++..||.+|.+.+..+.|.-..-.+ ...+.+..+|+.... +..+++||
T Consensus 21 ~~-~~~~tv~~ll~~L~~~~p~~~~~l~--~~~~~v~vN~~~v~~-----~~~l~~gD 70 (81)
T 1fm0_D 21 VA-ADFPTVEALRQHMAAQSDRWALALE--DGKLLAAVNQTLVSF-----DHPLTDGD 70 (81)
T ss_dssp EC-SCCSBHHHHHHHHHTTCHHHHHHHC--CTTCEEEETTEECCT-----TCBCCTTC
T ss_pred Ec-CCCCCHHHHHHHHHHHChhHHHHhc--CCCEEEEECCEECCC-----CCCCCCCC
Confidence 55 5778999999999866542111121 245678889998754 34577776
No 140
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=74.86 E-value=22 Score=26.04 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=42.9
Q ss_pred eEEEEEeCCCc--eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe-C-C---eecCC-CCcccccCCCCC
Q 033465 8 LEIKFRLTDGS--DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS-A-G---KILEN-NRTLGECRSPLC 79 (118)
Q Consensus 8 i~i~~~~~~g~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~-~-G---k~L~D-~~tL~~~~i~~~ 79 (118)
+.+++...... .+. +.+...+||.+|++.+.+.. .+|. ...+||-. . . ..|+| +.+|.+++|.++
T Consensus 140 ~~l~l~~~~~~~~~~~-~~~Sk~~ti~~l~~~~~~~~-----~i~~-~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~ 212 (231)
T 3jyu_A 140 LELKLCENSDPTNVLS-CHFSKADTIATIEKEMRKLF-----NIPA-ERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQG 212 (231)
T ss_dssp EEEEEEETTEEEEEEE-EEECTTCBHHHHHHHHHHHT-----TCCT-TSCEEEEECSSSSSCEECCCTTSBTTTTTCCTT
T ss_pred ceEEEEecCCCCceEE-EEecccCcHHHHHHHHHHHh-----CCCC-CCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCC
Confidence 34455443322 233 67799999999999997653 3543 23689843 2 2 36665 579999999976
No 141
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=74.47 E-value=5.6 Score=23.75 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=34.5
Q ss_pred eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
..+ +++++..||.+|.+.+..++|. +.. . ...+..+|++...+ ..+++||
T Consensus 17 ~~~-~~~~~~~tv~~ll~~l~~~~p~-~~~----v-~~~v~vNg~~v~~~-----~~L~~gD 66 (77)
T 2q5w_D 17 QED-IVLEQALTVQQFEDLLFERYPQ-INN----K-KFQVAVNEEFVQKS-----DFIQPND 66 (77)
T ss_dssp EEE-CCCSSCEEHHHHHHHHHHHCGG-GTT----C-CCEEEETTEEECTT-----SEECTTC
T ss_pred EEE-EECCCCCCHHHHHHHHHHHCcc-hhc----c-eEEEEECCEECCCC-----CCcCCCC
Confidence 344 7777889999999999877542 111 1 23788899988754 4567776
No 142
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.66 E-value=23 Score=29.60 Aligned_cols=81 Identities=7% Similarity=0.007 Sum_probs=56.9
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC-----eecCCCCcccccCCCCCC
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG-----KILENNRTLGECRSPLCD 80 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G-----k~L~D~~tL~~~~i~~~~ 80 (118)
-.|.++|.+.+| ++. +.+++++|+.+|=+.|... -++.. ....=|.|.. .+|+.+.+|.+.++..+
T Consensus 3 k~i~v~V~llDg-t~e-~~vd~~tt~~ell~~V~~~-----LgL~e-~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~- 73 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELE-FAIQQTTTGKQLFDQVVKT-----IGLRE-VWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKE- 73 (575)
T ss_dssp CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHH-----HTCCC-GGGEEEEEEBTTSCEEECCTTSBGGGSCBCCC-
T ss_pred ceEEEEEEeCCC-eEE-EEECCCCCHHHHHHHHHHH-----cCCCC-ccceeEEEEecCcchhHhhccccHHHhcccCC-
Confidence 368899999998 788 9999999999999988754 23332 4555665532 37888888887766533
Q ss_pred CCCCeEEEEEEeCCCCch
Q 033465 81 IPGGVTTMHVVVQPPSTE 98 (118)
Q Consensus 81 ~p~~~~tmhlv~~~~~~~ 98 (118)
.+..+++-++.-.+.
T Consensus 74 ---~~~~L~FRvkfy~~~ 88 (575)
T 2i1j_A 74 ---NPLQFKFRAKFYPED 88 (575)
T ss_dssp ---SSEEEEEEESSCCSS
T ss_pred ---CCeEEEEEEEEcCCC
Confidence 245777777765543
No 143
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=72.04 E-value=4.6 Score=26.01 Aligned_cols=32 Identities=13% Similarity=0.401 Sum_probs=24.7
Q ss_pred EEEEeCCCceeeeeecC-CcccHHHHHHHhhhh
Q 033465 10 IKFRLTDGSDIGPKSFP-AATSVATLKESVLSQ 41 (118)
Q Consensus 10 i~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~ 41 (118)
|.+|+.+.+....+.|| ...||.+||+.|..+
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~ 41 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGR 41 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHH
Confidence 56666666666657776 789999999999865
No 144
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=70.20 E-value=5.9 Score=29.99 Aligned_cols=77 Identities=13% Similarity=-0.044 Sum_probs=52.1
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC---C--eecCCCCcccccCCCCCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA---G--KILENNRTLGECRSPLCDI 81 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~---G--k~L~D~~tL~~~~i~~~~~ 81 (118)
.+.++|.+.+|...+ +.+++.+|+.+|=+.|.++. ++.. .+..=|.|. | +.|+.++.|.+.... .
T Consensus 17 ~~~~~V~lldgt~~~-~~vd~~tt~~el~~~v~~~l-----~L~e-~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~-~-- 86 (296)
T 3qij_A 17 QGHCKVSLLDDTVYE-CVVEKHAKGQDLLKRVCEHL-----NLLE-EDYFGLAIWDNATSKTWLDSAKEIKKQVRG-V-- 86 (296)
T ss_dssp CCEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHH-----TCSS-GGGEEEEEEEETTEEEECCTTSBHHHHC------
T ss_pred eEEEEEEccCCCEEE-EEECCCCCHHHHHHHHHHHc-----CCCC-cceeEEEEEcCCCccchhccchhHHHhcCC-C--
Confidence 488999999999998 99999999999999997642 2321 344445443 2 478877777665321 1
Q ss_pred CCCeEEEEEEeCCCC
Q 033465 82 PGGVTTMHVVVQPPS 96 (118)
Q Consensus 82 p~~~~tmhlv~~~~~ 96 (118)
+.++++-++--.
T Consensus 87 ---~~~l~frvkfy~ 98 (296)
T 3qij_A 87 ---PWNFTFNVKFYP 98 (296)
T ss_dssp ---CCEEEEEESSCC
T ss_pred ---CcEEEEEEEEeC
Confidence 246666666544
No 145
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=70.06 E-value=17 Score=22.50 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=36.8
Q ss_pred CceeeeeecCCcccHHHHHHHhhhhCCCcccCCCC-----C-CCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 17 GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPR-----T-VKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 17 g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~-----~-~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
|...+ ++. +..||.+|.+.+..++|.-....-. . ...+++.-+|+...+..-+ +..+++||
T Consensus 16 g~~~~-~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gD 82 (93)
T 3dwg_C 16 GGQKS-VSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGD 82 (93)
T ss_dssp TTCSE-EEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTC
T ss_pred CCCeE-Eec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCC
Confidence 43334 664 4579999999999888742211000 0 1357888889877642222 34578776
No 146
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=66.26 E-value=22 Score=22.45 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=35.4
Q ss_pred CCCceeeeeecCCc-ccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 15 TDGSDIGPKSFPAA-TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 15 ~~g~~~~~~~v~~~-~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+.+ ++++. .||.+|.+.+. .+ +..+.+..+|+++..+ ...+..+++||
T Consensus 25 vNGe~~---el~~~~~Tv~dLL~~L~---------~~--~~~vaVavNg~iV~~~-~~~~~~L~dGD 76 (87)
T 1tyg_B 25 LNGKDV---KWKKDTGTIQDLLASYQ---------LE--NKIVIVERNKEIIGKE-RYHEVELCDRD 76 (87)
T ss_dssp ETTEEE---CCSSSCCBHHHHHHHTT---------CT--TSCCEEEETTEEECGG-GTTTSBCCSSS
T ss_pred ECCEEE---ECCCCCCcHHHHHHHhC---------CC--CCCEEEEECCEECChh-hcCCcCCCCCC
Confidence 477654 56776 89999999882 22 3577788999998532 23345678887
No 147
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=65.06 E-value=30 Score=26.63 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=46.9
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC---------eecCCCCcccccCC
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG---------KILENNRTLGECRS 76 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G---------k~L~D~~tL~~~~i 76 (118)
..+.++|.+.+|.... +.+++++|+.+|=+.|.++. ++. +.+..-|.+.- +.|+-+++|.+-+.
T Consensus 84 ~~~~~~V~l~dg~~~~-~~vd~~tt~~el~~~v~~~l-----~L~-e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARI-----GIT-NHDEYSLVRELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHHT-----TCS-CGGGEEEECCC----------CCCTTSBTGGGTC
T ss_pred ceeEEEEECcCCCEEE-EEECCCCCHHHHHHHHHHHc-----CCC-CccccEEEEEecccccchHHHHHhcCchhHhhCC
Confidence 3477889999999998 99999999999999997652 232 24566665532 46776777766554
Q ss_pred C
Q 033465 77 P 77 (118)
Q Consensus 77 ~ 77 (118)
.
T Consensus 157 ~ 157 (371)
T 3ivf_A 157 E 157 (371)
T ss_dssp C
T ss_pred C
Confidence 3
No 148
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.28 E-value=5.4 Score=25.96 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=48.4
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE---eCCeecCCCCcccccCCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI---SAGKILENNRTLGECRSPL 78 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI---~~Gk~L~D~~tL~~~~i~~ 78 (118)
-|.++++-|+.......- +.|.|..+..+|=-.|-++ -+.- ++..-|. -.+..|+=+.+|.+|||.+
T Consensus 7 PE~TvRLvVNy~~tQKtV-vRVSP~vpL~ellp~IC~K----cefd---p~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTI-VRVSPHASLQELAPIICSK----CEFD---PLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CCSCEEEEEEETTTEEEE-EEECSSSCTTTHHHHHHHH----TTCC---TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CccEEEEEEeecCcceeE-EEeCCCCcHHHHHHHHhhc----ccCC---hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 357899999997544443 8999999999998888654 1222 3444443 3556888899999999984
No 149
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=64.23 E-value=5.6 Score=24.21 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=30.5
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+++++..||.+|.+.+. ++ ...+.+..+|+++..+ ..+++||
T Consensus 25 ~~~~~~~Tv~dLl~~L~---------~~--~~~v~VavNg~~v~~~-----~~L~dGD 66 (77)
T 1rws_A 25 IEWREGMKVRDILRAVG---------FN--TESAIAKVNGKVVLED-----DEVKDGD 66 (77)
T ss_dssp CCCCSSCCHHHHHHTTT---------CS--SCSSCEEETTEEECSS-----SCCCSSC
T ss_pred EECCCCCcHHHHHHHhC---------CC--CcCEEEEECCEECCCC-----CCcCCCC
Confidence 56778899999988872 22 3567888999988755 3456665
No 150
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=60.46 E-value=30 Score=22.09 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=43.5
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCee--cCCCCcccccCCCCCC
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI--LENNRTLGECRSPLCD 80 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~--L~D~~tL~~~~i~~~~ 80 (118)
+-+|.++|+.++-++++..- -+.--.|. +.-+|.-+.|+- |.++-|+++.||..-+
T Consensus 19 v~VDt~dtmdqVA~k~A~h~-VGrrv~p~-pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 19 VVVDLNDSMDQVAEKVAYHC-VNRRVAPR-EGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEETTCBHHHHHHHHHHTT-BTTTBCCC-SSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred EEecCCCcHHHHHHHHhhhh-cceeeCCC-CCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 77899999999999998652 11111233 468999999997 9999999999998654
No 151
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=60.02 E-value=14 Score=27.98 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=28.6
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhh
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLS 40 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~ 40 (118)
....|+|-..+|.... +.|++++|+.+|-+.+..
T Consensus 7 ~~~ivkv~~~d~ss~~-l~V~~~mta~ev~~~l~~ 40 (256)
T 3hk0_A 7 AKQDVKVFSEDGTSKV-VEILADMTARDLCQLLVY 40 (256)
T ss_dssp -CEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHC
T ss_pred CceEEEEEecCCcEEE-EEECCCCCHHHHHHHHHH
Confidence 3456777789999998 999999999999988864
No 152
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=57.59 E-value=23 Score=22.67 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=27.2
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
..+.|||-.. +.-+. +.++++.+..+||++|..+
T Consensus 11 ~~~KVK~yy~-DDIiA-IrvP~di~~~~L~dKi~~R 44 (85)
T 1ip9_A 11 KTTKIKFYYK-DDIFA-LMLKGDTTYKELRSKIAPR 44 (85)
T ss_dssp CCEEEEECBT-TCCEE-EEECSCCCHHHHHHHHHHH
T ss_pred CceEEEEEec-CcEEE-EECCCCCCHHHHHHHHHHH
Confidence 4577777555 45666 9999999999999999866
No 153
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=52.50 E-value=24 Score=27.01 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=29.6
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhh
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLS 40 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~ 40 (118)
..+.++|-..+|.... +.|++++|+.+|-+.+..
T Consensus 30 ~k~ivkv~~~D~ss~~-l~V~~~~TA~dv~~~L~~ 63 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKT-MMVDERQTVRQVLDNLMD 63 (281)
T ss_dssp CEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHH
T ss_pred ccEEEEEEecCCCEEE-EEECCCCcHHHHHHHHHH
Confidence 4567888889999998 999999999999888765
No 154
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=51.95 E-value=20 Score=29.31 Aligned_cols=35 Identities=9% Similarity=0.164 Sum_probs=31.3
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
..+.++|.+.+|.... +.+++.+|+.+|-+.|.++
T Consensus 215 ~~~~~~V~l~dg~~~~-~~v~~~tt~~el~~~v~~~ 249 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCK-ITINSHTTAGEVVEKLIRG 249 (555)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHHH
T ss_pred CCcceEEEecCCCeEE-EEeCCCCcHHHHHHHHHHH
Confidence 3578899999999998 9999999999999999765
No 155
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=49.81 E-value=16 Score=23.84 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=35.9
Q ss_pred eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCc-----eEEEeCCe--ecCC------CCcccccCCCCCC
Q 033465 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKD-----VKLISAGK--ILEN------NRTLGECRSPLCD 80 (118)
Q Consensus 19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~-----~rLI~~Gk--~L~D------~~tL~~~~i~~~~ 80 (118)
... ++++++.|..++-+.+.++- .-.-..| +... -|=+|.-. .|+. +++|.++|+.+|+
T Consensus 6 ~~~-l~v~~~~TL~~lid~L~~~p-~~qlk~P-Sltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ 77 (98)
T 1y8x_B 6 PQN-IQFSPSAKLQEVLDYLTNSA-SLQMKSP-AITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ 77 (98)
T ss_dssp CCC-EECCTTCBHHHHHHHHHHCT-TCCCSSC-EEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTC
T ss_pred cEE-EEECCchhHHHHHHHHHhCh-HhhccCC-eeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCC
Confidence 344 89999999999999997641 1111122 1111 24455443 4543 3578999998875
No 156
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=48.84 E-value=37 Score=19.61 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=34.8
Q ss_pred eCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 14 LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 14 ~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+++|+.+ +++...||.+|.+.+. .+ ...+.+..+|+++... ...+..+++||
T Consensus 4 ~vNg~~~---~~~~~~tv~~ll~~l~---------~~--~~~v~vavN~~~v~~~-~~~~~~L~~gD 55 (66)
T 1f0z_A 4 LFNDQAM---QCAAGQTVHELLEQLD---------QR--QAGAALAINQQIVPRE-QWAQHIVQDGD 55 (66)
T ss_dssp EESSCEE---CCCTTCCHHHHHHHHT---------CC--CSSEEEEETTEEECHH-HHTTCCCCTTE
T ss_pred EECCEEE---EcCCCCcHHHHHHHcC---------CC--CCCEEEEECCEECCch-hcCCcCCCCCC
Confidence 3467654 5678899999999882 22 3677888999988532 12234567775
No 157
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=48.54 E-value=85 Score=23.68 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=33.3
Q ss_pred CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe-ecCCCC
Q 033465 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK-ILENNR 69 (118)
Q Consensus 16 ~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk-~L~D~~ 69 (118)
.-.... +.+.+..|+.++++.+.++ .+++ ++.|.|+|.|. +.-|..
T Consensus 320 ~~~~~~-~~~~~~~~~~~~~~~~~~~-----t~i~--~~~q~~l~~~~~~~~~~~ 366 (396)
T 4eut_A 320 QMTAHK-IYIHSYNTATIFHELVYKQ-----TKII--SSNQELIYEGRRLVLEPG 366 (396)
T ss_dssp TTEEEE-EEECTTCBHHHHHHHHHHH-----HCCC--STTEEEESSSSEECCCSS
T ss_pred cceEEE-EEcCchhHHHHHHHHHHHh-----cCCC--hhhhHHHhcCCCCCCCCC
Confidence 344444 7788999999999999754 3454 58999999994 443443
No 158
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=47.16 E-value=53 Score=20.89 Aligned_cols=57 Identities=5% Similarity=0.076 Sum_probs=42.6
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eecCCCCcccccCCCCCC
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILENNRTLGECRSPLCD 80 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L~D~~tL~~~~i~~~~ 80 (118)
+-+|.++|..++=++++.+- -+.--.|.+-.-+|.-+.| +.|..+.|+++.||..-+
T Consensus 17 V~VDt~dTmdqVA~kvA~Hs-VGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e 75 (83)
T 2inc_C 17 VPVDTEDTMDQVAEKCAYHS-INRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTE 75 (83)
T ss_dssp EEECTTCBHHHHHHHHHTTT-BTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred EEecCCCcHHHHHHHHhhhh-cceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCce
Confidence 67899999999999998651 1111113223468888999 999999999999998543
No 159
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=47.11 E-value=19 Score=32.81 Aligned_cols=81 Identities=12% Similarity=0.141 Sum_probs=51.8
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccC---CCCCCCceEEEeCCe-----ec-CCCCcccccCCC
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKEN---GPRTVKDVKLISAGK-----IL-ENNRTLGECRSP 77 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~---~p~~~~~~rLI~~Gk-----~L-~D~~tL~~~~i~ 77 (118)
.|.|.+.+.+|..+. ++++.+.|+.++|+.+|.+ +...+ .=.++++--|.|-.+ .+ ++.+.|.++.+-
T Consensus 42 ~i~vd~LLPnGi~i~-l~v~~~~tl~~iK~~lw~~--a~~~pl~~~l~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~~ 118 (1091)
T 3hhm_A 42 RILVECLLPNGMIVT-LECLREATLITIKHELFKE--ARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 118 (1091)
T ss_dssp -EEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHH--GGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBTTTSCBS
T ss_pred ceEEEEEcCCCeEEE-EEecCCCcHHHHHHHHHHH--HHhCcchhhcCChhHeEEEEEccCceEeeeecCceeeEEeecc
Confidence 389999999999998 9999999999999999865 11110 001234555555443 34 455567666654
Q ss_pred CCCCCCCeEEEEEEeCCCCc
Q 033465 78 LCDIPGGVTTMHVVVQPPST 97 (118)
Q Consensus 78 ~~~~p~~~~tmhlv~~~~~~ 97 (118)
. -.+.|+.+....
T Consensus 119 ~-------~~l~lve~~~~~ 131 (1091)
T 3hhm_A 119 Q-------PFLKVIEPVGNR 131 (1091)
T ss_dssp S-------SEEEEECCCSCC
T ss_pred c-------eeEEEEecCCCh
Confidence 2 255666655333
No 160
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=45.86 E-value=24 Score=22.32 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=22.6
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHH
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATL 34 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~l 34 (118)
..-++|+|...+|...+ +++++..|+.+.
T Consensus 4 ~~m~~V~~~~~~g~~~~-v~~~~g~tLL~a 32 (108)
T 2bt6_A 4 GDKITVHFINRDGETLT-TKGKIGDSLLDV 32 (108)
T ss_dssp -CEEEEEEECTTSCEEE-EEEETTCBHHHH
T ss_pred CceEEEEEECCCCCEEE-EEECCCChHHHH
Confidence 34467888777898777 889999999875
No 161
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=45.76 E-value=26 Score=22.29 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=22.5
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHH
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLK 35 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK 35 (118)
+|+|...+|.+.. +++++..|+.+.=
T Consensus 2 ~vt~~~~~G~~~~-~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTE-IQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEE-EECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEE-EEECCCChHHHHH
Confidence 5888889999988 9999999998764
No 162
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=44.08 E-value=30 Score=29.37 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=31.7
Q ss_pred ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
..+.++|.+.+|.... +++++.+|+.+|=+.|..+
T Consensus 262 ~~i~~~V~llDgt~~~-~~vds~Tt~~ell~~V~~~ 296 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKT-LLTDSATTARELCNALADK 296 (655)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHHH
T ss_pred CceEEEEEecCCceEE-EEEccCCcHHHHHHHHHHH
Confidence 4688999999999998 9999999999999999865
No 163
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=43.66 E-value=16 Score=27.70 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=27.5
Q ss_pred CceeEEEEEeCCCceeeeeecCC--cccHHHHHHHh
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPA--ATSVATLKESV 38 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~--~~TV~~lK~~I 38 (118)
.+-+.|.|-+.+|..+. ++++. ++|+.+|-+++
T Consensus 3 ~~~~~i~V~l~dg~~~~-~~i~~~~~tt~~el~e~l 37 (322)
T 4dxa_B 3 PEFEKVRIYRMDGSYRS-VELKHGNNTTVQQIMEGM 37 (322)
T ss_dssp --CCEEEEECTTSCEEE-EECTTGGGCCHHHHHTTS
T ss_pred CCceEEEEEEECCcEEE-EEEcCCCCCcHHHHHHHh
Confidence 45678999999999998 99998 99999996654
No 164
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=43.12 E-value=62 Score=20.55 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=34.4
Q ss_pred CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC
Q 033465 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG 62 (118)
Q Consensus 5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G 62 (118)
..+|.||+... |..+. +.++++.+..+|.++|....+ .+. ...+.|-|.-
T Consensus 4 ~~~vkvK~~~~-gdi~~-~~v~~~i~~~~L~~kv~~~~~-----~~~-~~~f~lky~D 53 (89)
T 1vd2_A 4 GSQVRVKAYYR-GDIMI-THFEPSISFEGLCNEVRDMCS-----FDN-EQLFTMKWID 53 (89)
T ss_dssp SSCEEEEEESS-SCEEE-EEECTTCCHHHHHHHHHHHTT-----CCS-SCCEEEEECC
T ss_pred CCeEEEEEEeC-CeEEE-EECCCCCCHHHHHHHHHHHhC-----CCC-CCeEEEEEEC
Confidence 34577777665 55665 899999999999999986643 221 2446666653
No 165
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=43.01 E-value=53 Score=19.71 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=34.0
Q ss_pred CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+.+ ++ +..||.+|-+.+. ++ +..+-+-.+|.++.-+ ...+..+++||
T Consensus 5 vNG~~~---e~-~~~Tl~~LL~~l~---------~~--~~~vAV~vNg~iVpr~-~~~~~~L~dGD 54 (73)
T 2kl0_A 5 INGEQR---EV-QSASVAALMTELD---------CT--GGHFAVALNYDVVPRG-KWDETPVTAGD 54 (73)
T ss_dssp ETTEEE---CC-CCSBHHHHHHHTT---------CC--SSSCEEEESSSEECHH-HHTTCBCCTTC
T ss_pred ECCEEE---Ec-CCCcHHHHHHHcC---------CC--CCcEEEEECCEECChH-HcCcccCCCCC
Confidence 467665 45 6689999988772 33 3567788999988522 33445678887
No 166
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=42.08 E-value=38 Score=21.16 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=23.1
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHH
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKES 37 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~ 37 (118)
.+.|+|...+|...+ +++++..|+.+.=+.
T Consensus 3 ~~~v~~~~~~g~~~~-~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 3 GIKVFFVTPEGREIM-IEGNEGDSILDLAHA 32 (103)
T ss_dssp CEEEEEECTTCCEEE-EEECTTCBHHHHHHH
T ss_pred ceEEEEEeCCCCEEE-EEECCCCHHHHHHHH
Confidence 467888767897777 899999999876433
No 167
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=40.29 E-value=32 Score=23.17 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=29.5
Q ss_pred CCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeCC
Q 033465 52 TVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQP 94 (118)
Q Consensus 52 ~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~~ 94 (118)
+|-.+||-|-|++.+|+..=++|.+..| ..++.+-..-
T Consensus 59 ~PYyLRL~lP~~vved~~~~A~YD~d~g-----~~~v~lpK~~ 96 (115)
T 3eud_A 59 SPYYLRLRFPHELIDDERSTAQYDSKDE-----CINVKVAKLN 96 (115)
T ss_dssp TTEEEEEECSSCEECSTTCEEEEETTTT-----EEEEEEEESS
T ss_pred CCeEEEEecCcceecCCCcceEEeCCCc-----EEEEEEcCCc
Confidence 3579999999999999988888999876 3566654443
No 168
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=39.88 E-value=39 Score=19.45 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=21.2
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHHhh
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVL 39 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~ 39 (118)
.+++.+.+|+. .+++...|+.++-+.+.
T Consensus 2 ~i~i~~p~g~~---~~~~~g~T~~dla~~i~ 29 (73)
T 2kmm_A 2 EVMVFTPKGEI---KRLPQGATALDFAYSLH 29 (73)
T ss_dssp CEEEECTTCCE---EEECTTCBHHHHHHHHC
T ss_pred eEEEEcCCCCE---EEcCCCCcHHHHHHHHh
Confidence 46666678865 46778899999988873
No 169
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=39.53 E-value=70 Score=20.79 Aligned_cols=35 Identities=6% Similarity=-0.003 Sum_probs=26.6
Q ss_pred eeEEEEEeCC-------CceeeeeecCCcccHHHHHHHhhhhC
Q 033465 7 QLEIKFRLTD-------GSDIGPKSFPAATSVATLKESVLSQW 42 (118)
Q Consensus 7 ~i~i~~~~~~-------g~~~~~~~v~~~~TV~~lK~~I~~~w 42 (118)
.|.||+...+ +..+. +-++++.+..+|.++|..+.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~-i~V~~~i~f~~L~~kI~~Kl 46 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFT-LLVEKVWNFDDLIMAINSKI 46 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEE-EEECTTCCHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEE-EEecCCCCHHHHHHHHHHHH
Confidence 3677776653 44565 89999999999999997653
No 170
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=39.29 E-value=20 Score=23.58 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=21.1
Q ss_pred CceeeeeecCC----cccHHHHHHHhhhhCCCcc
Q 033465 17 GSDIGPKSFPA----ATSVATLKESVLSQWPKEK 46 (118)
Q Consensus 17 g~~~~~~~v~~----~~TV~~lK~~I~~~wp~~~ 46 (118)
|+..+ ++++. ..||.+|=+.|.+++|.+.
T Consensus 20 g~~~~-v~l~~~~g~~~TV~dLl~~L~~~~~~~r 52 (110)
T 2k9x_A 20 AKQTS-LQLDGVVPTGTNLNGLVQLLKTNYVKER 52 (110)
T ss_dssp TSCSE-ECCCCSCGGGCCHHHHHHHHTTTTCCSC
T ss_pred CCeEE-EEeCCcCCCCccHHHHHHHHHHHccccc
Confidence 45555 77773 3599999999998877543
No 171
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=37.57 E-value=45 Score=20.56 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=23.2
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHH
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKES 37 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~ 37 (118)
.++|+|...+|.... +++++..|+.+.=+.
T Consensus 4 ~~~v~~~~~~~~~~~-~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 4 VHTITAVTEDGESLR-FECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEEEETTTEEEE-EEEESCCTHHHHHHH
T ss_pred cEEEEEEecCCCcEE-EEeCCCChHHHHHHH
Confidence 467888777777777 899999999876444
No 172
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=36.41 E-value=42 Score=28.63 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=39.0
Q ss_pred eCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe-ecCCCCcccccC
Q 033465 14 LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK-ILENNRTLGECR 75 (118)
Q Consensus 14 ~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk-~L~D~~tL~~~~ 75 (118)
.......+ +.+.++.|+.++++.|.++ .++| ++.|-||+.+. .|+.....+.|.
T Consensus 318 ~~~~~~~~-~~i~~~~tl~~l~~~i~~~-----T~i~--~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 318 MVSGRVHT-YPVTENENLQNLKSWLQQD-----TGIP--EEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSSSCCCE-EECCTTCCHHHHHHHHHTT-----SCCC--STTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccccce-eecCCCccHHHHHHHHHHH-----hCCC--HHHHHHHhccCCCCCCCcchhhhe
Confidence 34555566 8889999999999999643 5676 47888888665 556665666653
No 173
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=36.07 E-value=98 Score=20.82 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=52.5
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCC--CcccCCCCCCCceEEEeCCe--ecCCC--CcccccCCC
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWP--KEKENGPRTVKDVKLISAGK--ILENN--RTLGECRSP 77 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp--~~~~~~p~~~~~~rLI~~Gk--~L~D~--~tL~~~~i~ 77 (118)
..+.|..++-..+..-++ +.+..+.|+.+|+..++++.- ++....+.+.-...+-|+|. +|+++ -..+++++.
T Consensus 6 ~~Dei~~~VY~~Dhsy~t-vr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~N 84 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSYVT-IRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGIN 84 (120)
T ss_dssp SCCCEEECEECTTSCCCC-EEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSS
T ss_pred CCCcEEEEEEeccCceEE-EEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeecccc
Confidence 345688888888887777 899999999999999987631 11111222234555567887 45433 355567776
Q ss_pred CCCCCCCeEEEEEEeC
Q 033465 78 LCDIPGGVTTMHVVVQ 93 (118)
Q Consensus 78 ~~~~p~~~~tmhlv~~ 93 (118)
+ .+++..+
T Consensus 85 -g-------RLfvc~k 92 (120)
T 2dhz_A 85 -S-------HLFACTR 92 (120)
T ss_dssp -E-------EEEEECT
T ss_pred -c-------eEEEeeh
Confidence 2 6676555
No 174
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=35.70 E-value=85 Score=20.14 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=46.1
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeCCCCc
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPST 97 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~~~~~ 97 (118)
-++|=...+..||+.+..+ -++.. +.-.+-..+..|++.++|-+-+++ |+ ..+.+.+-+.+..+
T Consensus 7 qhmDI~epL~~Lk~LLe~R-----l~i~L--~~y~f~LQd~~L~~~k~LvdQcVq-ge---GlVQinvqik~~~~ 70 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPR-----LQCSL--DAHEICLQDIQLDPDRSLFDQGVK-TD---GTVQLSVQVISYQG 70 (89)
T ss_dssp EEEESSSBGGGHHHHSHHH-----HCSCC--SSCEEEETTEECCTTSBTTTSSCC-CC---SEEEEEEEEECCTT
T ss_pred hhccccCcHHHHHHHHHHH-----hcCCc--ccCeEEeeccccCCCccHHHhhcc-cc---cEEEEEEEEEecCC
Confidence 3556677888899988654 24443 556666788889999999999997 44 46777777776544
No 175
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=34.08 E-value=37 Score=23.89 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=20.5
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHH
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKES 37 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~ 37 (118)
.|+| +++|+.++ +++++.+|+.++=..
T Consensus 5 ~i~~-~vNG~~~~-~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIEL-TINGHPVE-ALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEE-EETTEEEE-EEECTTCBHHHHHHH
T ss_pred eEEE-EECCEEEE-EecCCCCcHHHHHHH
Confidence 4555 34899998 999999999975443
No 176
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=33.99 E-value=51 Score=20.82 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHH
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLK 35 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK 35 (118)
-+.|+|...+|.+.+ +++++..|+.+.=
T Consensus 5 m~~v~~~~~~g~~~~-~~~~~g~tlL~aa 32 (109)
T 2y5c_A 5 VVNVVFVDRSGQRIP-VSGRVGDNVLHLA 32 (109)
T ss_dssp EEEEEEECTTSCEEE-EEEETTCBHHHHH
T ss_pred cEEEEEEcCCCCEEE-EEECCCCcHHHHH
Confidence 366777778899877 8899999998763
No 177
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=33.58 E-value=38 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=20.3
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHH
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKES 37 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~ 37 (118)
.|+| +++|+.++ +++++.+|+.++=..
T Consensus 5 ~i~~-~vNG~~~~-~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITV-NVNGKAQE-KAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEE-EETTEEEE-EEECTTCBHHHHHHH
T ss_pred eEEE-EECCEEEE-EecCCCCcHHHHHHh
Confidence 4455 34899998 999999999975443
No 178
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=33.26 E-value=55 Score=20.46 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=20.1
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHH
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATL 34 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~l 34 (118)
.|+|...+|...+ +++++..|+.+.
T Consensus 2 ~v~~~~~~g~~~~-~~~~~g~tlL~a 26 (106)
T 1uwm_A 2 KIIFIEHNGTRHE-VEAKPGLTVMEA 26 (106)
T ss_dssp EEEEECTTCCEEE-EECCTTSBHHHH
T ss_pred EEEEEeCCCCEEE-EEECCCCcHHHH
Confidence 5677677897777 899999999875
No 179
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=32.03 E-value=74 Score=18.16 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=34.6
Q ss_pred eCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 14 LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 14 ~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
+++|+.++ + +..||.+|.+.+. .+ ...+.+..+|+++..+ .-.+..+++||
T Consensus 3 ~vNg~~~~---~-~~~tv~~ll~~l~---------~~--~~~v~vavN~~~v~~~-~~~~~~L~dgD 53 (64)
T 2cu3_A 3 WLNGEPRP---L-EGKTLKEVLEEMG---------VE--LKGVAVLLNEEAFLGL-EVPDRPLRDGD 53 (64)
T ss_dssp EETTEEEC---C-TTCCHHHHHHHHT---------BC--GGGEEEEETTEEEEGG-GCCCCCCCTTC
T ss_pred EECCEEEE---c-CCCcHHHHHHHcC---------CC--CCcEEEEECCEECCcc-ccCCcCCCCCC
Confidence 35776654 4 6689999999883 22 3677888999988632 22334678886
No 180
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=31.99 E-value=58 Score=20.33 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=20.9
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHH
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKE 36 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~ 36 (118)
.|+|...+|.+.+ +++++..|+.+.=.
T Consensus 2 ~V~~~~~~g~~~~-~~~~~g~tlLeaa~ 28 (106)
T 1xlq_A 2 KVVYVSHDGTRRE-LDVADGVSLMQAAV 28 (106)
T ss_dssp EEEEECTTSCEEE-EECCTTCBHHHHHH
T ss_pred EEEEEeCCCCEEE-EEECCCCcHHHHHH
Confidence 4677677897777 89999999987643
No 181
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=31.86 E-value=45 Score=23.36 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=20.3
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHH
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLK 35 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK 35 (118)
+.|+| +++|+.++ ++++|..|+.++=
T Consensus 4 ~~i~~-~vNG~~~~-v~v~p~~tLLd~L 29 (160)
T 3hrd_D 4 ITINL-NLNGEARS-IVTEPNKRLLDLL 29 (160)
T ss_dssp EEEEE-EETTEEEE-EEECSSSBHHHHH
T ss_pred ceEEE-EECCEEEE-EecCCCCCHHHHH
Confidence 45555 35899998 9999999998753
No 182
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=31.58 E-value=68 Score=23.16 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=28.6
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
.+.|+|-..+|.... +.|++++|+.+|-+.+..+
T Consensus 34 k~~v~v~~~d~~~k~-i~v~~~~ta~ev~~~L~~k 67 (291)
T 3tca_A 34 KLVVKVHMDDSSTKS-LMVDERQLARDVLDNLFEK 67 (291)
T ss_dssp EEEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHH
T ss_pred ceEEEEEcCCCceEE-EEeCCCCcHHHHHHHHHHH
Confidence 456777778898888 9999999999999988754
No 183
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=31.38 E-value=75 Score=19.28 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=34.0
Q ss_pred CCCceeeeeecC--CcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 15 TDGSDIGPKSFP--AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 15 ~~g~~~~~~~v~--~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++|+.+ +++ ...||.+|-+.+.-.| +..+-+-++|.++.-+ ...+..+++||
T Consensus 5 vNGe~~---e~~~~~~~Tl~~LL~~l~~~~----------~~~vAVavNg~iVpr~-~~~~~~L~dGD 58 (78)
T 2k5p_A 5 VNGKPS---TVDGAESLNVTELLSALKVAQ----------AEYVTVELNGEVLERE-AFDATTVKDGD 58 (78)
T ss_dssp ETTEEE---ECSSCSCEEHHHHHHHHTCSC----------TTTCCEEETTEECCTT-HHHHCEECSSB
T ss_pred ECCEEE---EcCCCCCCcHHHHHHHcCCCC----------CCcEEEEECCEECChH-HcCcccCCCCC
Confidence 467654 566 7799999998883222 2455578899888533 33445667776
No 184
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=30.95 E-value=96 Score=25.49 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=39.3
Q ss_pred eeEEEEEeCCCc--eeeeeecCCcccHHHHHHHhhhhCCCcccCCC-CCCCceEE--EeCCe---ecCCCCccccc
Q 033465 7 QLEIKFRLTDGS--DIGPKSFPAATSVATLKESVLSQWPKEKENGP-RTVKDVKL--ISAGK---ILENNRTLGEC 74 (118)
Q Consensus 7 ~i~i~~~~~~g~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p-~~~~~~rL--I~~Gk---~L~D~~tL~~~ 74 (118)
.+.|.+.....+ .+. +-++.+.||.+|-+.+.++- +++ .+.+.+|| ||+|| ++.++.+|+..
T Consensus 339 ~~kv~w~~~~~~~~~~~-l~vpK~gtV~Dll~~l~k~~-----~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 339 SFKCIWLNSQFREEEIT-LYPDKHGCVRDLLEECKKAV-----ELGEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp CEEEEEECTTSCEEEEE-ECCBTTCBHHHHHHHHHTTC-----CCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred eEEEEEECCCCceEEEE-EEcCCCCCHHHHHHHHHHhc-----CCCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 355555432222 233 66688999999999997542 222 23578998 69998 45677777544
No 185
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=30.68 E-value=41 Score=23.40 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=21.1
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHHh
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKESV 38 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I 38 (118)
.|+| +++|+.++ +++++.+|+.++=...
T Consensus 4 ~i~~-~vNG~~~~-v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 4 ILRL-TLNGRARE-DLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-EETTEEEE-EEEETTCBHHHHHHHT
T ss_pred eEEE-EECCEEEE-EecCCcCcHHHHHHHc
Confidence 3444 35999998 8999999998765544
No 186
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=30.15 E-value=51 Score=22.98 Aligned_cols=60 Identities=17% Similarity=0.337 Sum_probs=38.4
Q ss_pred CcccHHHHHHHhhhhCCCcccCCCCCCCceEE-----------------EeCCeec-CCCCcccccCCCCCCCCCCeEEE
Q 033465 27 AATSVATLKESVLSQWPKEKENGPRTVKDVKL-----------------ISAGKIL-ENNRTLGECRSPLCDIPGGVTTM 88 (118)
Q Consensus 27 ~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL-----------------I~~Gk~L-~D~~tL~~~~i~~~~~p~~~~tm 88 (118)
.+.|..+|-..|.+..|...... .-=..|+ ++.|+-- +|++||.++++.-|| .|
T Consensus 62 ~daTLrEL~~Lvk~~~p~ar~~g--trl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGD------yi 133 (143)
T 4a6q_A 62 MDATLKELTSLVKEVYPEARKKG--THFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGD------YL 133 (143)
T ss_dssp TTCBHHHHHHHHHHHCGGGGSTT--CEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTC------EE
T ss_pred CCCCHHHHHHHHHHhCccccCCC--CEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCC------EE
Confidence 78899999999988766532100 0012223 4445533 688999999999887 45
Q ss_pred EEEeCC
Q 033465 89 HVVVQP 94 (118)
Q Consensus 89 hlv~~~ 94 (118)
.+.+-+
T Consensus 134 dvaI~p 139 (143)
T 4a6q_A 134 DIAITP 139 (143)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 555544
No 187
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=29.56 E-value=42 Score=22.58 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=24.9
Q ss_pred eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~ 61 (118)
+.|-.++|+.++|+.|++. -++| +++|||-..
T Consensus 60 ~rv~k~~~~~~~~~~va~~-----lg~~--~~~~RlW~~ 91 (130)
T 2kvr_A 60 FKVLKNSSLAEFVQSLSQT-----MGFP--QDQIRLWPM 91 (130)
T ss_dssp EECCTTSBHHHHHHHHHHH-----HCCC--GGGCEEEEC
T ss_pred EEEeccCcHHHHHHHHHHH-----hCCC--cccEEEEEe
Confidence 5667799999999999754 2565 589999654
No 188
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=28.29 E-value=87 Score=20.72 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCceeeeeecCCcccHHHH
Q 033465 7 QLEIKFRLTDGSDIGPKSFPAATSVATL 34 (118)
Q Consensus 7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~l 34 (118)
-.+|+|...+|.+.+ +++++..|+.+.
T Consensus 21 M~~Vt~~~~~G~~~~-v~~~~G~tLL~a 47 (126)
T 3hui_A 21 MAKINFVDHTGETRT-VEVEEGATVMEA 47 (126)
T ss_dssp EEEEEEECTTSCEEE-EEEETTSBHHHH
T ss_pred ceEEEEEeCCCCEEE-EEECCCCcHHHH
Confidence 368888878998887 899999999875
No 189
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=28.14 E-value=86 Score=20.66 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=34.5
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC
Q 033465 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61 (118)
Q Consensus 3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~ 61 (118)
+...+++|||-...-+++ +.|+.-.+.++|..++...+ + -++-|-|.
T Consensus 4 ~~~~dvRiKfE~~GEkRI--i~f~RPv~f~eL~~Kv~~~f-----G-----q~ldL~y~ 50 (103)
T 2cu1_A 4 GSSGDVRVKFEHRGEKRI--LQFPRPVKLEDLRSKAKIAF-----G-----QSMDLHYT 50 (103)
T ss_dssp SSSCEEEEEEEETTEEEE--EEEESSCCHHHHHHHHHHHH-----S-----SCEEEEEC
T ss_pred cccCcEEEEEEecCeEEE--EeccCCccHHHHHHHHHHHh-----C-----CeeeEEEe
Confidence 345678888877544444 89999999999999996542 2 36667777
No 190
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=26.83 E-value=61 Score=22.48 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=21.1
Q ss_pred eEEEEEeCCCceeeeeecCCcccHHHHHHH
Q 033465 8 LEIKFRLTDGSDIGPKSFPAATSVATLKES 37 (118)
Q Consensus 8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~ 37 (118)
+.|+|. ++|+.++ +++++..|+.++=..
T Consensus 10 m~i~~~-ing~~~~-~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRV-FYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEE-EEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEE-EecCCCCcHHHHHHh
Confidence 455553 4899998 899999999876544
No 191
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=25.43 E-value=79 Score=19.10 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHH
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKES 37 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~ 37 (118)
.|+|...+| ..+ +++++..|+.+.=+.
T Consensus 3 ~v~~~~~~g-~~~-~~~~~g~tlL~a~~~ 29 (95)
T 1frr_A 3 KTVLKTPSG-EFT-LDVPEGTTILDAAEE 29 (95)
T ss_dssp EEEEEETTE-EEE-EEECTTCCHHHHHHH
T ss_pred EEEEEeCCC-cEE-EEeCCCCcHHHHHHH
Confidence 566766777 555 788999999876443
No 192
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=24.69 E-value=92 Score=21.24 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=32.1
Q ss_pred eecCC----cccHHHHHHHhhhhCCCcccCCCCC-CCceEEEeCCeecC-CCCcccccCCCCC
Q 033465 23 KSFPA----ATSVATLKESVLSQWPKEKENGPRT-VKDVKLISAGKILE-NNRTLGECRSPLC 79 (118)
Q Consensus 23 ~~v~~----~~TV~~lK~~I~~~wp~~~~~~p~~-~~~~rLI~~Gk~L~-D~~tL~~~~i~~~ 79 (118)
+.+++ ..|..+|-+.|..++-.+ +.+... .+.+||||-=-+=+ =+++|+++|+..|
T Consensus 10 l~v~~~dl~~~TL~dLV~~l~~~~gy~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~g 71 (127)
T 3onh_A 10 IKLSSDCLNKMKLSDFVVLIREKYSYP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNG 71 (127)
T ss_dssp EEECHHHHHHCBHHHHHHHHHHHHTCC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTT
T ss_pred EEeCcccccccCHHHHHHHHHHhcCCC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCC
Confidence 45553 457777666664432111 112111 23678888765443 2469999999976
No 193
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=24.34 E-value=1.2e+02 Score=18.01 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=34.0
Q ss_pred eecCCcccHHHHHHHhhhhCCCccc-------CCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465 23 KSFPAATSVATLKESVLSQWPKEKE-------NGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (118)
Q Consensus 23 ~~v~~~~TV~~lK~~I~~~wp~~~~-------~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~ 80 (118)
++++...||.+|.+.+..+.|.-.. ++ ...+.+..+|+.....+- .+..+++||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~---~~~v~v~vN~~~v~~~~~-~~~~l~~gD 79 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNL---FKNVIILVNGNNITSMKG-LDTEIKDDD 79 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCS---TTTCEEEESSSBGGGTCS-SSCBCCTTC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCc---CcceEEEECCEEccccCC-CCcCCCCCC
Confidence 5666678999999999877652110 11 145678889987752111 233577776
No 194
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*
Probab=23.77 E-value=29 Score=25.19 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=10.9
Q ss_pred CceEEEeCCeecCCCCcccc
Q 033465 54 KDVKLISAGKILENNRTLGE 73 (118)
Q Consensus 54 ~~~rLI~~Gk~L~D~~tL~~ 73 (118)
..+|||+.||.+...++|-.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (201)
T 2vq5_A 3 GSQKLILTGRPFLHHQGIIN 22 (201)
T ss_dssp -CCEEEECCC------CTTG
T ss_pred ccceeeecCCCCCChhhhhh
Confidence 57999999998877776644
No 195
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=22.33 E-value=63 Score=22.45 Aligned_cols=33 Identities=6% Similarity=0.244 Sum_probs=24.1
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcc---cHHHHHHHh
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAAT---SVATLKESV 38 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~---TV~~lK~~I 38 (118)
....++|++.. +|.++. .++..+. |+.++.+++
T Consensus 26 ~~~~~~I~i~~-~~~~~~-a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 26 RGVEMRLRIRF-ESAECE-VELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CSSCCCEEEEE-TTEEEE-ECCCTTSCHHHHHHHHHTC
T ss_pred ccCCeEEEEEE-CCEEEE-EEEcCCCCHHHHHHHHHhC
Confidence 33356666654 667787 8998898 999988776
No 196
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=21.19 E-value=1.4e+02 Score=19.84 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=27.8
Q ss_pred CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (118)
Q Consensus 4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 41 (118)
...+++|||-.-.-+++ +.|+.-....+|.+++...
T Consensus 28 ~q~dvRIKfE~~gEKRI--iqf~RPvkf~dl~qkv~~a 63 (111)
T 2c60_A 28 RQSDVRIKFEHNGERRI--IAFSRPVKYEDVEHKVTTV 63 (111)
T ss_dssp --CCEEEEEEETTEEEE--EEECSSCCHHHHHHHHHHH
T ss_pred cccceEEEEEecCceEE--EecCCCccHHHHHHHHHHH
Confidence 45678999987555555 8999999999999999654
No 197
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=21.18 E-value=49 Score=20.68 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=19.6
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHH
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLK 35 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK 35 (118)
.|+|...+|.+.+ +++++..|+.+.=
T Consensus 2 ~V~~~~~~g~~~~-~~~~~g~tlL~aa 27 (105)
T 1b9r_A 2 RVVFIDEQSGEYA-VDAQDGQSLMEVA 27 (105)
T ss_dssp EEEECCTTTSCEE-EECCTTCCTTHHH
T ss_pred EEEEEeCCCCEEE-EEECCCChHHHHH
Confidence 4666567887777 8899999988753
No 198
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=20.86 E-value=1e+02 Score=18.71 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=19.1
Q ss_pred EEEEEeCCCceeeeeecCCcccHHHHHHH
Q 033465 9 EIKFRLTDGSDIGPKSFPAATSVATLKES 37 (118)
Q Consensus 9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~ 37 (118)
.|+|...+| ..+ +++++..|+.+.=..
T Consensus 2 ~v~~~~~~g-~~~-~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 2 KVTLKTPSG-EET-IECPEDTYILDAAEE 28 (94)
T ss_dssp EEEEEETTE-EEE-EECCTTSCHHHHHHH
T ss_pred EEEEEeCCC-cEE-EEECCCCcHHHHHHH
Confidence 456665666 555 789999999876444
Done!