Citrus Sinensis ID: 033466

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMELALLVVL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccEEEEcccccccEEEccccccccccEEcccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEcccccccEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccccEEEEEcccccccccEEcccccEccccccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
masascsaamlpfaetlkprahvdsssdskdhlindtpkttkvnrLHSIRVKAAanngntkrnsvvcadcdgngavlcsqckgsgvnavdffggqfkAEAKGICYAGTAMELALLVVL
Flexible Loop (DISEMBL)
MASASCSAAMLPFAETLKPRAHVdsssdskdhlindtpkttkvnrlhsirvkaaanngntkrnsVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMELALLVVL
Low Complexity Region (SEG)
MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMELALLVVL
Disordered region (IsUnstruct)
************************************************IRV*********KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMELALLVV*
Disordered Region (DISOPRED)
*****C*************************HLINDTPKTTKVNR********************VCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMELALLVVL
Disordered Region (DISEMBL)
********AMLPFAETLK*************HLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMELALLVVL
Disordered Region (DISPRO)
*****CSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMELALLVVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMELALLVVL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
13430174	131	putative chaperon P13.9 [Castanea sativa	0.872	0.786	0.447	9e-17
449437394	132	PREDICTED: uncharacterized protein LOC10	0.830	0.742	0.525	2e-16
359476132	139	PREDICTED: uncharacterized protein LOC10	0.703	0.597	0.525	8e-16
296082027	117	unnamed protein product [Vitis vinifera]	0.703	0.709	0.525	2e-15
224141891	132	predicted protein [Populus trichocarpa]	0.805	0.719	0.5	7e-15
356517012	133	PREDICTED: uncharacterized protein LOC10	0.593	0.526	0.541	1e-14
351721605	133	uncharacterized protein LOC100500330 [Gl	0.872	0.774	0.411	8e-14
359484668	132	PREDICTED: uncharacterized protein LOC10	0.872	0.780	0.433	1e-13
449443083	137	PREDICTED: uncharacterized protein LOC10	0.728	0.627	0.516	2e-13
297815948	136	bundle-sheath defective protein 2 family	0.711	0.617	0.505	1e-12

>gi|13430174|gb|AAK25754.1|AF334834_1 putative chaperon P13.9 [Castanea sativa]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNT 60
           MA++ C  ++  F    KP   +  S   K   +N+  + ++  +  S+ VKA  +N  T
Sbjct: 1   MANSLCFTSVCSFKSPNKPGIVIGKSVTRKVLRVNELFQKSETAKFQSLEVKATESNKGT 60

Query: 61  KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICY 105
           K NS+VCADCDGNGA LC+QC+GSGVN VD F GQFK  A G+C+
Sbjct: 61  KPNSIVCADCDGNGAKLCTQCEGSGVNTVDHFNGQFK--AGGLCW 103

Source: Castanea sativa

Species: Castanea sativa

Genus: Castanea

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437394|ref|XP_004136477.1| PREDICTED: uncharacterized protein LOC101218754 [Cucumis sativus] gi|449517804|ref|XP_004165934.1| PREDICTED: uncharacterized LOC101218754 [Cucumis sativus]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 64/99 (64%), Gaps = 1/99 (1%)

Query: 1  MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLI-NDTPKTTKVNRLHSIRVKAAANNGN 59
          MAS+S S +   F+ T    A +   S+ K +LI N     +   R   + +KAA N+ N
Sbjct: 1  MASSSFSPSANCFSSTTTLSAIIRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN 60

Query: 60 TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKA 98
          TK NSV+C DCDGNGAV+CSQCKG GVNAVDFF GQFKA
Sbjct: 61 TKPNSVICGDCDGNGAVVCSQCKGKGVNAVDFFNGQFKA 99

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476132|ref|XP_003631795.1| PREDICTED: uncharacterized protein LOC100854903 [Vitis vinifera]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 59/99 (59%), Gaps = 16/99 (16%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAA-ANNGN 59
           MASA+C  ++ PF+  LKP                  P   K         KAA +N+  
Sbjct: 23  MASAACLVSLNPFSALLKPGVR---------------PGFQKFPATKFSPPKAAQSNSKG 67

Query: 60  TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKA 98
           TK NSVVCADCDGNGAVLCSQCKGSGVN+VDFF GQFKA
Sbjct: 68  TKPNSVVCADCDGNGAVLCSQCKGSGVNSVDFFNGQFKA 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082027|emb|CBI21032.3| unnamed protein product [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 59/99 (59%), Gaps = 16/99 (16%)

Query: 1  MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAA-ANNGN 59
          MASA+C  ++ PF+  LKP                  P   K         KAA +N+  
Sbjct: 1  MASAACLVSLNPFSALLKPGVR---------------PGFQKFPATKFSPPKAAQSNSKG 45

Query: 60 TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKA 98
          TK NSVVCADCDGNGAVLCSQCKGSGVN+VDFF GQFKA
Sbjct: 46 TKPNSVVCADCDGNGAVLCSQCKGSGVNSVDFFNGQFKA 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141891|ref|XP_002324294.1| predicted protein [Populus trichocarpa] gi|118487830|gb|ABK95738.1| unknown [Populus trichocarpa] gi|222865728|gb|EEF02859.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 62/98 (63%), Gaps = 3/98 (3%)

Query: 4  ASCSAAMLPF-AETLKPRAHVDSSSDSKDHL--INDTPKTTKVNRLHSIRVKAAANNGNT 60
          ASCS  +LP  A+      H  +S   +  +  ++D    +   R   +RVKAA  N NT
Sbjct: 2  ASCSPFVLPIRAKQQDSGIHGTNSGMQEIKILGVHDFFHNSSTARRCCVRVKAAPGNRNT 61

Query: 61 KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKA 98
          K NS++CADCDGNGAVLCSQCKGSGVN+ D F G+FKA
Sbjct: 62 KPNSMICADCDGNGAVLCSQCKGSGVNSADLFNGRFKA 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517012|ref|XP_003527184.1| PREDICTED: uncharacterized protein LOC100808293 [Glycine max]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 54/72 (75%), Gaps = 2/72 (2%)

Query: 34  INDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFG 93
           IN+    +K     S++VKAA +N +TK  S+VC+DC+GNGA+LC+QCKG+GVN+VD F 
Sbjct: 36  INEACHDSKARNFQSLKVKAADDNPSTKTKSIVCSDCEGNGAILCTQCKGTGVNSVDHFN 95

Query: 94  GQFKAEAKGICY 105
           GQFK  A G+C+
Sbjct: 96  GQFK--AGGLCW 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721605|ref|NP_001236447.1| uncharacterized protein LOC100500330 [Glycine max] gi|255630057|gb|ACU15382.1| unknown [Glycine max]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 4/107 (3%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANN--G 58
           MA + C A +     + +P A   +S   K   + +  + ++V    S++VKA  +N   
Sbjct: 1   MAHSLCFAPICSLKSSNRPGAVTGNSVTRKAFEMKEVCQNSEVPNFQSLKVKATEDNTTK 60

Query: 59  NTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICY 105
           +TK  S+VC+DCDGNGA+ C+QCKG+GVN+VD F GQFK  A G+C+
Sbjct: 61  STKVRSIVCSDCDGNGAISCTQCKGTGVNSVDHFNGQFK--AGGLCW 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484668|ref|XP_003633142.1| PREDICTED: uncharacterized protein LOC100855207 [Vitis vinifera] gi|147777824|emb|CAN62523.1| hypothetical protein VITISV_033397 [Vitis vinifera] gi|297738950|emb|CBI28195.3| unnamed protein product [Vitis vinifera]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 3/106 (2%)

Query: 1   MASASCSAAMLPFAETLKPRAHV-DSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGN 59
           MA++ C +  +    + KP   V  SS+  K    N+  +    ++  S+ VKA  +N +
Sbjct: 1   MANSLCFSPAISSKSSHKPGVVVVGSSAAGKVFKFNNVFQHHGNSKFQSLEVKATDSNQS 60

Query: 60  TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAEAKGICY 105
           TK NS+VC++CDGNGA+ CSQCKG GVN+VD F GQFK  A G+C+
Sbjct: 61  TKPNSIVCSNCDGNGAIQCSQCKGDGVNSVDHFNGQFK--AGGLCW 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443083|ref|XP_004139310.1| PREDICTED: uncharacterized protein LOC101221053 [Cucumis sativus] gi|449520705|ref|XP_004167374.1| PREDICTED: uncharacterized LOC101221053 [Cucumis sativus]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 56/91 (61%), Gaps = 5/91 (5%)

Query: 18  KPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKA---AANNGNTKRNSVVCADCDGNG 74
           KP   V +S   K   IN+  + T   RL S  VKA   A +   TK  S+VC DCDGNG
Sbjct: 21  KPGVLVGNSVPQKAFRINEAFQKTNSIRLLSFEVKASDGADSKQTTKYKSIVCTDCDGNG 80

Query: 75  AVLCSQCKGSGVNAVDFFGGQFKAEAKGICY 105
           AV CSQCKG+GVN+VD F GQFK  A G+C+
Sbjct: 81  AVQCSQCKGTGVNSVDHFNGQFK--AGGLCW 109

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815948|ref|XP_002875857.1| bundle-sheath defective protein 2 family [Arabidopsis lyrata subsp. lyrata] gi|297321695|gb|EFH52116.1| bundle-sheath defective protein 2 family [Arabidopsis lyrata subsp. lyrata]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 5/89 (5%)

Query: 18  KPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGN-TKRNSVVCADCDGNGAV 76
           KP +H  S++D+   L+    +  + +R  S  VKAA NN   TK NS+VCA+CDGNG V
Sbjct: 24  KP-SHFFSTNDNTSSLVQKR-ELLQTSRSQSFEVKAANNNPQSTKPNSLVCANCDGNGCV 81

Query: 77  LCSQCKGSGVNAVDFFGGQFKAEAKGICY 105
            CSQCKG GVN +D F GQFKA A  +C+
Sbjct: 82  ACSQCKGGGVNLIDHFNGQFKAGA--LCW 108

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2079132	136	AT3G47650 [Arabidopsis thalian	0.711	0.617	0.483	6e-16

TAIR|locus:2079132 AT3G47650 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 43/89 (48%), Positives = 57/89 (64%)

Query:    18 KPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGN-TKRNSVVCADCDGNGAV 76
             KP +H  S++D+   L+    +  + +R  S  VKAA NN   TK NS+VCA+C+G G V
Sbjct:    24 KP-SHFFSTNDNTSSLVQKR-ELLQTSRSQSFEVKAANNNPQGTKPNSLVCANCEGEGCV 81

Query:    77 LCSQCKGSGVNAVDFFGGQFKAEAKGICY 105
              CSQCKG GVN +D F GQFKA A  +C+
Sbjct:    82 ACSQCKGGGVNLIDHFNGQFKAGA--LCW 108


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.128   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      118       118   0.00091  102 3  11 22  0.49    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  549 (58 KB)
  Total size of DFA:  118 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.80u 0.19s 13.99t   Elapsed:  00:00:01
  Total cpu time:  13.80u 0.19s 13.99t   Elapsed:  00:00:01
  Start:  Thu May  9 14:16:59 2013   End:  Thu May  9 14:17:00 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032639001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (128 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	96.81
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.54
PRK10767	371	chaperone protein DnaJ; Provisional	95.86
PRK14290	365	chaperone protein DnaJ; Provisional	95.4
PRK14286	372	chaperone protein DnaJ; Provisional	95.36
PRK14279	392	chaperone protein DnaJ; Provisional	95.11
PRK14296	372	chaperone protein DnaJ; Provisional	94.96
PRK14283	378	chaperone protein DnaJ; Provisional	94.9
PRK14298	377	chaperone protein DnaJ; Provisional	94.82
PLN03165	111	chaperone protein dnaJ-related; Provisional	94.79
PRK14294	366	chaperone protein DnaJ; Provisional	94.75
PRK14288	369	chaperone protein DnaJ; Provisional	94.74
PRK14284	391	chaperone protein DnaJ; Provisional	94.62
PRK14300	372	chaperone protein DnaJ; Provisional	94.6
PRK14289	386	chaperone protein DnaJ; Provisional	94.53
PRK14278	378	chaperone protein DnaJ; Provisional	94.51
PRK14295	389	chaperone protein DnaJ; Provisional	94.46
PRK14301	373	chaperone protein DnaJ; Provisional	94.41
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	94.37
PRK14277	386	chaperone protein DnaJ; Provisional	94.23
PRK14280	376	chaperone protein DnaJ; Provisional	94.12
PRK14276	380	chaperone protein DnaJ; Provisional	94.09
PRK14285	365	chaperone protein DnaJ; Provisional	94.03
PRK14287	371	chaperone protein DnaJ; Provisional	94.02
PRK14282	369	chaperone protein DnaJ; Provisional	93.99
PRK14281	397	chaperone protein DnaJ; Provisional	93.98
PRK14297	380	chaperone protein DnaJ; Provisional	93.59
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	93.47
PRK14293	374	chaperone protein DnaJ; Provisional	93.0
PRK14291	382	chaperone protein DnaJ; Provisional	92.91
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	92.72
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	92.53
PRK14292	371	chaperone protein DnaJ; Provisional	92.28
PTZ00037	421	DnaJ_C chaperone protein; Provisional	91.62
PRK10767	371	chaperone protein DnaJ; Provisional	90.11
KOG2813	406	consensus Predicted molecular chaperone, contains	89.86
PRK14291	382	chaperone protein DnaJ; Provisional	87.94
PRK14287	371	chaperone protein DnaJ; Provisional	85.08
PRK14282	369	chaperone protein DnaJ; Provisional	84.97
PRK14293	374	chaperone protein DnaJ; Provisional	84.18
PRK14284	391	chaperone protein DnaJ; Provisional	83.71
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	83.27
PRK14279	392	chaperone protein DnaJ; Provisional	82.9
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	82.21
PRK14298	377	chaperone protein DnaJ; Provisional	81.97
PRK14294	366	chaperone protein DnaJ; Provisional	81.66
PRK14288	369	chaperone protein DnaJ; Provisional	81.36
PRK14292	371	chaperone protein DnaJ; Provisional	81.2
PRK14290	365	chaperone protein DnaJ; Provisional	80.94
PRK14286	372	chaperone protein DnaJ; Provisional	80.89
PRK14300	372	chaperone protein DnaJ; Provisional	80.81
PRK14297	380	chaperone protein DnaJ; Provisional	80.62

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=96.81  E-value=0.00068  Score=43.66  Aligned_cols=44  Identities=34%  Similarity=0.690  Sum_probs=26.6

Q ss_pred             eccCCCCCc------EecccccCCcccceec--cCCeecccccceeeeecccce
Q 033466           67 CADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        67 C~dC~GnGa------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~~~  112 (118)
                      |+.|+|+|+      ..|.+|.|+|+-..-.  ..|.|..-  ..|-.|.|.-.
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~--~~C~~C~G~G~   52 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQ--QTCPKCGGTGK   52 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEE--EE-TTTSSSSE
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEE--EECCCCcceee
Confidence            677777776      6788888888765544  44555544  66666666543

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.54  E-value=0.001  Score=48.45  Aligned_cols=33  Identities=36%  Similarity=0.808  Sum_probs=27.3

Q ss_pred             CccccceEeccCCCCCcEecccccCCcccceec
Q 033466           59 NTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDF   91 (118)
Q Consensus        59 ~tKp~sivC~dC~GnGa~~C~QCkG~GVN~~D~   91 (118)
                      ........|..|+|.|...|..|.|+|+-....
T Consensus        36 ~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~   68 (111)
T PLN03165         36 AKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL   68 (111)
T ss_pred             hhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe
Confidence            445567899999999999999999999877655

>PRK10767 chaperone protein DnaJ; Provisional

Probab=95.86  E-value=0.0036  Score=51.03  Aligned_cols=44  Identities=30%  Similarity=0.675  Sum_probs=28.8

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeeccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAM  110 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~  110 (118)
                      ..+.|+.|+|+|+      ..|.+|.|+|+-....  |.|..-  ..|.-|.|+
T Consensus       141 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~--~~C~~C~G~  190 (371)
T PRK10767        141 TLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ--GFFTVQ--QTCPTCHGR  190 (371)
T ss_pred             ecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee--ceEEEE--EeCCCCCCc
Confidence            5678999999995      4799999999765443  444222  344444444

>PRK14290 chaperone protein DnaJ; Provisional

Probab=95.40  E-value=0.008  Score=49.17  Aligned_cols=34  Identities=35%  Similarity=0.866  Sum_probs=23.6

Q ss_pred             cceEeccCCCCCc-----EecccccCCcccceeccCCee
Q 033466           63 NSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQF   96 (118)
Q Consensus        63 ~sivC~dC~GnGa-----~~C~QCkG~GVN~~D~f~G~f   96 (118)
                      ..++|+.|+|+|+     ..|.+|.|+|+-..=...|.|
T Consensus       148 r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~  186 (365)
T PRK14290        148 RNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFF  186 (365)
T ss_pred             ecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeE
Confidence            3567999999886     568899998875444333433

>PRK14286 chaperone protein DnaJ; Provisional

Probab=95.36  E-value=0.0082  Score=49.44  Aligned_cols=44  Identities=32%  Similarity=0.641  Sum_probs=32.4

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeeccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAM  110 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~  110 (118)
                      ..+.|++|.|.|+      ..|.+|.|+|+-....  |.|.-  ...|.-|.|+
T Consensus       149 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~--~~~C~~C~G~  198 (372)
T PRK14286        149 RLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ--GFFSV--ATTCPTCRGK  198 (372)
T ss_pred             ccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe--ceEEE--EEeCCCCCce
Confidence            5778999999996      6799999999866553  55532  2566666665

>PRK14279 chaperone protein DnaJ; Provisional

Probab=95.11  E-value=0.0081  Score=49.91  Aligned_cols=46  Identities=30%  Similarity=0.652  Sum_probs=32.9

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ..+.|+.|.|+|+      ..|.+|.|+|+-..-.  |.|-  ....|.-|.|+-.
T Consensus       172 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~--~~~~C~~C~G~G~  223 (392)
T PRK14279        172 SPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--GAFG--FSEPCTDCRGTGS  223 (392)
T ss_pred             ccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--cceE--EEEecCCCCceeE
Confidence            5678999999997      4699999999866554  4442  2356777766543

>PRK14296 chaperone protein DnaJ; Provisional

Probab=94.96  E-value=0.013  Score=48.49  Aligned_cols=32  Identities=34%  Similarity=0.686  Sum_probs=25.3

Q ss_pred             cceEeccCCCCCcE------ecccccCCcccceeccCC
Q 033466           63 NSVVCADCDGNGAV------LCSQCKGSGVNAVDFFGG   94 (118)
Q Consensus        63 ~sivC~dC~GnGa~------~C~QCkG~GVN~~D~f~G   94 (118)
                      ..+.|..|.|+|+.      .|..|.|+|+-....-.|
T Consensus       148 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g  185 (372)
T PRK14296        148 LLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMG  185 (372)
T ss_pred             eeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEecc
Confidence            46789999999964      599999999877665333

>PRK14283 chaperone protein DnaJ; Provisional

Probab=94.90  E-value=0.011  Score=48.66  Aligned_cols=47  Identities=23%  Similarity=0.391  Sum_probs=32.9

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceecc--CCeecccccceeeeecccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f--~G~fKag~~~~CWlc~g~~  111 (118)
                      ..+.|++|.|.|.      ..|.+|.|+|+-...+.  .|.+..-  -.|+-|.|.-
T Consensus       145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~--~~C~~C~G~G  199 (378)
T PRK14283        145 HTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNV--TTCPDCQGEG  199 (378)
T ss_pred             eeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEE--EECCCCCccc
Confidence            5678999999885      46999999998766553  3555433  4566665543

>PRK14298 chaperone protein DnaJ; Provisional

Probab=94.82  E-value=0.012  Score=48.63  Aligned_cols=29  Identities=31%  Similarity=0.747  Sum_probs=23.0

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceec
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF   91 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~   91 (118)
                      ..+.|..|.|+|+      ..|++|.|+|+-....
T Consensus       140 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~  174 (377)
T PRK14298        140 RAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTR  174 (377)
T ss_pred             eeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEE
Confidence            4678999999997      5799999999765443

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=94.79  E-value=0.021  Score=41.71  Aligned_cols=36  Identities=33%  Similarity=0.848  Sum_probs=28.8

Q ss_pred             ccceEeccCCCCCcEecccccCCcccceeccCCeec
Q 033466           62 RNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFK   97 (118)
Q Consensus        62 p~sivC~dC~GnGa~~C~QCkG~GVN~~D~f~G~fK   97 (118)
                      .....|+.|+|.|-+.|..|+|.|+-+.-+-+=.||
T Consensus        73 q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~~~~  108 (111)
T PLN03165         73 KEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRREFK  108 (111)
T ss_pred             EEEEECCCCCCcceeeCCCCCCCEEEeeeecccccC
Confidence            357899999999999999999999987655444454

>PRK14294 chaperone protein DnaJ; Provisional

Probab=94.75  E-value=0.015  Score=47.66  Aligned_cols=46  Identities=30%  Similarity=0.629  Sum_probs=30.8

Q ss_pred             cceEeccCCCCCcE------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           63 NSVVCADCDGNGAV------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        63 ~sivC~dC~GnGa~------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ..+.|++|.|+|+.      .|.+|.|+|+-....  |.|.-  ...|..|.|+-.
T Consensus       143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--G~~~~--~~~C~~C~G~G~  194 (366)
T PRK14294        143 KLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ--GFFSI--RTTCPRCRGMGK  194 (366)
T ss_pred             ecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe--eeEEE--EeeCCCCCCcCe
Confidence            56789999999964      689999998765443  44432  255666665543

>PRK14288 chaperone protein DnaJ; Provisional

Probab=94.74  E-value=0.017  Score=47.60  Aligned_cols=45  Identities=33%  Similarity=0.615  Sum_probs=29.4

Q ss_pred             cceEeccCCCCCc-----EecccccCCcccceeccCCeecccccceeeeecccc
Q 033466           63 NSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        63 ~sivC~dC~GnGa-----~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      ....|..|.|+|+     ..|.+|.|+|+-....  |.+.--  ..|.-|.|+-
T Consensus       139 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~--g~~~~~--~~C~~C~G~G  188 (369)
T PRK14288        139 YQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ--GFMSFA--QTCGACQGKG  188 (369)
T ss_pred             eeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe--ceEEEE--EecCCCCCCc
Confidence            3458999999996     4599999999765543  444222  3566665554

>PRK14284 chaperone protein DnaJ; Provisional

Probab=94.62  E-value=0.017  Score=47.85  Aligned_cols=44  Identities=32%  Similarity=0.645  Sum_probs=27.2

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeeccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAM  110 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~  110 (118)
                      ..+.|+.|.|.|+      ..|.+|.|+|+-..-.  |.|..-  ..|.-|.|.
T Consensus       157 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~~--~~C~~C~G~  206 (391)
T PRK14284        157 GYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR--GFFSMA--STCPECGGE  206 (391)
T ss_pred             eeccCCCCcccccCCCCCCeecCccCCeeEEEEEe--ceEEEE--EECCCCCCC
Confidence            4677888888886      4588888888654332  444322  445555443

>PRK14300 chaperone protein DnaJ; Provisional

Probab=94.60  E-value=0.018  Score=47.29  Aligned_cols=45  Identities=29%  Similarity=0.666  Sum_probs=31.7

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      ....|+.|+|+|.      ..|++|.|+|....  ..|-|..-  ..|+-|.|+-
T Consensus       144 r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~--~~g~~~~~--~~C~~C~G~G  194 (372)
T PRK14300        144 SEVKCDTCHGSGSEKGETVTTCDACSGVGATRM--QQGFFTIE--QACHKCQGNG  194 (372)
T ss_pred             eccccCCCCCcccCCCCCCccCCCccCeEEEEE--eeceEEEE--EeCCCCCccc
Confidence            4678999999995      67999999997654  33555432  4666665554

>PRK14289 chaperone protein DnaJ; Provisional

Probab=94.53  E-value=0.014  Score=47.95  Aligned_cols=46  Identities=30%  Similarity=0.582  Sum_probs=31.0

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceecc--CCeecccccceeeeeccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAEAKGICYAGTAM  110 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f--~G~fKag~~~~CWlc~g~  110 (118)
                      ..+.|+.|+|+|+      ..|.+|.|+|+-....-  .|-+..  ...|+.|.|.
T Consensus       153 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~--~~~C~~C~G~  206 (386)
T PRK14289        153 KYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQT--QSTCPTCNGE  206 (386)
T ss_pred             eecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEE--EEecCCCCcc
Confidence            5688999999995      57999999998766542  233322  2455555444

>PRK14278 chaperone protein DnaJ; Provisional

Probab=94.51  E-value=0.023  Score=46.95  Aligned_cols=46  Identities=30%  Similarity=0.642  Sum_probs=29.7

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceec--cCCeecccccceeeeeccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAM  110 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~  110 (118)
                      ..+.|+.|.|.|+      ..|++|.|+|+-..-.  +.|+|..-  ..|.-|.|.
T Consensus       138 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~--~~C~~C~G~  191 (378)
T PRK14278        138 TAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTS--RPCPTCRGV  191 (378)
T ss_pred             eeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEE--EECCCCCcc
Confidence            5678999999996      4699999999744332  33455322  344444443

>PRK14295 chaperone protein DnaJ; Provisional

Probab=94.46  E-value=0.018  Score=47.82  Aligned_cols=45  Identities=27%  Similarity=0.624  Sum_probs=31.9

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      ..++|++|+|.|+      ..|.+|.|+|+-..-.  |.|-  ....|.-|.|+-
T Consensus       165 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~--~~~~C~~C~G~G  215 (389)
T PRK14295        165 SQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGFS--LSEPCPDCKGRG  215 (389)
T ss_pred             ccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cceE--EEEecCCCccee
Confidence            5678999999996      5799999999876654  4442  224566665554

>PRK14301 chaperone protein DnaJ; Provisional

Probab=94.41  E-value=0.019  Score=47.29  Aligned_cols=45  Identities=33%  Similarity=0.635  Sum_probs=30.9

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      ..+.|+.|+|.|+      ..|.+|.|+|+-....  |.|.-  ...|..|.|.-
T Consensus       143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~--~~~C~~C~G~G  193 (373)
T PRK14301        143 KNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ--GFFQI--AVPCPVCRGEG  193 (373)
T ss_pred             ecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe--eeEEE--EEeCCCCCcee
Confidence            5678999999996      5699999999755443  44433  25566665553

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=94.37  E-value=0.029  Score=36.05  Aligned_cols=13  Identities=31%  Similarity=1.020  Sum_probs=6.4

Q ss_pred             cceEeccCCCCCc
Q 033466           63 NSVVCADCDGNGA   75 (118)
Q Consensus        63 ~sivC~dC~GnGa   75 (118)
                      +...|+.|.|.|.
T Consensus        14 ~~~~C~~C~G~G~   26 (66)
T PF00684_consen   14 KPKTCPQCNGSGQ   26 (66)
T ss_dssp             T-EE-TTSSSSSE
T ss_pred             CCcCCcCCCCeeE
Confidence            3446666666664

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14277 chaperone protein DnaJ; Provisional

Probab=94.23  E-value=0.019  Score=47.44  Aligned_cols=46  Identities=26%  Similarity=0.442  Sum_probs=29.4

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceec--cCCeecccccceeeeeccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAM  110 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~  110 (118)
                      ..+.|++|+|.|+      ..|.+|.|+|+-..-.  .-|.+..-  ..|..|.|+
T Consensus       154 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~--~~C~~C~G~  207 (386)
T PRK14277        154 RFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI--RTCDRCHGE  207 (386)
T ss_pred             eeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE--EECCCCCcc
Confidence            5678999999996      5699999999754433  22333332  345555443

>PRK14280 chaperone protein DnaJ; Provisional

Probab=94.12  E-value=0.022  Score=46.87  Aligned_cols=47  Identities=30%  Similarity=0.577  Sum_probs=31.8

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceecc--CCeecccccceeeeecccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f--~G~fKag~~~~CWlc~g~~  111 (118)
                      ..+.|++|.|+|+      ..|.+|.|+|+=.....  -|.+.-  ...|+.|.|+-
T Consensus       142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~--~~~C~~C~G~G  196 (376)
T PRK14280        142 KEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVN--RQTCPHCNGTG  196 (376)
T ss_pred             eeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEE--EEEcCCCCCCC
Confidence            5678999999995      56999999997544432  234432  25677666653

>PRK14276 chaperone protein DnaJ; Provisional

Probab=94.09  E-value=0.022  Score=46.99  Aligned_cols=46  Identities=35%  Similarity=0.702  Sum_probs=30.9

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceec--cCCeecccccceeeeeccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAM  110 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~  110 (118)
                      ..+.|.+|+|+|+      ..|.+|.|+|+=....  .-|.|..-  ..|..|.|.
T Consensus       145 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~--~~C~~C~G~  198 (380)
T PRK14276        145 REATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQ--VTCDVCHGT  198 (380)
T ss_pred             ccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEE--EECCCCCCC
Confidence            5678999999996      5699999999755443  22334322  456666554

>PRK14285 chaperone protein DnaJ; Provisional

Probab=94.03  E-value=0.026  Score=46.42  Aligned_cols=44  Identities=27%  Similarity=0.622  Sum_probs=29.6

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeeccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAM  110 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~  110 (118)
                      ..+.|.+|.|.|+      ..|.+|.|+|+-..  -.|.+..  ...|.-|.|+
T Consensus       145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~--~~G~~~~--~~~C~~C~G~  194 (365)
T PRK14285        145 RNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ--GGGFFRV--TTTCPKCYGN  194 (365)
T ss_pred             ecccCCCCCCcccCCCCCCccCCCccCceeEEe--cCceeEE--eeecCCCCCc
Confidence            4678999999995      46999999997654  2244422  2455555554

>PRK14287 chaperone protein DnaJ; Provisional

Probab=94.02  E-value=0.023  Score=46.81  Aligned_cols=29  Identities=41%  Similarity=0.864  Sum_probs=22.8

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceec
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF   91 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~   91 (118)
                      ..+.|++|.|+|+      ..|.+|.|+|+-.+..
T Consensus       137 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~  171 (371)
T PRK14287        137 REETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQ  171 (371)
T ss_pred             eeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEE
Confidence            5678999999994      5699999999755443

>PRK14282 chaperone protein DnaJ; Provisional

Probab=93.99  E-value=0.029  Score=46.03  Aligned_cols=28  Identities=32%  Similarity=0.854  Sum_probs=22.6

Q ss_pred             cceEeccCCCCCc------EecccccCCccccee
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVD   90 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D   90 (118)
                      ..+.|.+|+|.|+      +.|.+|.|+|+-...
T Consensus       151 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~  184 (369)
T PRK14282        151 RYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREE  184 (369)
T ss_pred             ecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEE
Confidence            5678999999996      469999999976544

>PRK14281 chaperone protein DnaJ; Provisional

Probab=93.98  E-value=0.031  Score=46.45  Aligned_cols=47  Identities=30%  Similarity=0.588  Sum_probs=30.6

Q ss_pred             cceEeccCCCCCc-----EecccccCCcccce--eccCCeecccccceeeeecccc
Q 033466           63 NSVVCADCDGNGA-----VLCSQCKGSGVNAV--DFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        63 ~sivC~dC~GnGa-----~~C~QCkG~GVN~~--D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      ..+.|+.|.|.|+     ..|.+|.|+|+-..  -.+.|.|..-  ..|..|.|+-
T Consensus       162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~--~~C~~C~G~G  215 (397)
T PRK14281        162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNI--TACPTCGGEG  215 (397)
T ss_pred             eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEE--EecCCCccee
Confidence            4678999999996     46999999996432  2334555332  4555555543

>PRK14297 chaperone protein DnaJ; Provisional

Probab=93.59  E-value=0.035  Score=45.71  Aligned_cols=47  Identities=28%  Similarity=0.546  Sum_probs=31.8

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceec--cCCeecccccceeeeecccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~~  111 (118)
                      ..+.|++|.|.|+      ..|.+|.|+|+=.+..  ..|.+.--  ..|.-|.|+-
T Consensus       147 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~--~~C~~C~G~G  201 (380)
T PRK14297        147 RNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVST--TTCDKCGGSG  201 (380)
T ss_pred             eeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEE--EeCCCCCCCc
Confidence            5678999999996      5699999999655443  23444332  5666666553

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.47  E-value=0.039  Score=47.31  Aligned_cols=47  Identities=34%  Similarity=0.689  Sum_probs=35.6

Q ss_pred             ccceEeccCCCCCc------EecccccCCcc-cceeccCCeecccccceeeeecccc
Q 033466           62 RNSVVCADCDGNGA------VLCSQCKGSGV-NAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        62 p~sivC~dC~GnGa------~~C~QCkG~GV-N~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      +....|..|.|.||      +.|++|.|+|+ ..+... |.|..-  ..|.-|.|.-
T Consensus       140 ~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~-g~~~~~--~~C~~C~G~G  193 (371)
T COG0484         140 TRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT-GFFSFQ--QTCPTCNGTG  193 (371)
T ss_pred             ceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee-eEEEEE--EECCCCccce
Confidence            47889999999976      47999999996 555555 778666  6666666653

>PRK14293 chaperone protein DnaJ; Provisional

Probab=93.00  E-value=0.044  Score=45.01  Aligned_cols=25  Identities=40%  Similarity=0.930  Sum_probs=19.2

Q ss_pred             cceEeccCCCCCc------EecccccCCccc
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVN   87 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN   87 (118)
                      ..+.|++|+|.|.      ..|.+|.|+|+=
T Consensus       142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~  172 (374)
T PRK14293        142 HLETCETCRGSGAKPGTGPTTCSTCGGAGQV  172 (374)
T ss_pred             ccccCCCCCCcCCCCCCCCeeCCCCCCcceE
Confidence            5678888888886      358888888853

>PRK14291 chaperone protein DnaJ; Provisional

Probab=92.91  E-value=0.047  Score=45.11  Aligned_cols=27  Identities=37%  Similarity=0.786  Sum_probs=19.9

Q ss_pred             cceEeccCCCCCc------EecccccCCcccce
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAV   89 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~   89 (118)
                      ..+.|..|.|.|+      ..|.+|.|+|+-..
T Consensus       155 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~  187 (382)
T PRK14291        155 RYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQ  187 (382)
T ss_pred             eeccCCCCccccCCCCCCCccCCCCCCceEEEE
Confidence            5678888888884      46888888886433

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=92.72  E-value=0.059  Score=43.55  Aligned_cols=29  Identities=31%  Similarity=0.724  Sum_probs=23.1

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceec
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF   91 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~   91 (118)
                      ..++|..|.|.|+      ..|.+|.|+|+-....
T Consensus       142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~  176 (354)
T TIGR02349       142 RKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQ  176 (354)
T ss_pred             cCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEE
Confidence            5678999999995      5699999999765544

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=92.53  E-value=0.059  Score=42.20  Aligned_cols=23  Identities=39%  Similarity=1.057  Sum_probs=20.7

Q ss_pred             ceEeccCCCCCcEe-----cccccCCcc
Q 033466           64 SVVCADCDGNGAVL-----CSQCKGSGV   86 (118)
Q Consensus        64 sivC~dC~GnGa~~-----C~QCkG~GV   86 (118)
                      +..|+.|.|.|-+.     |..|.|+|.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~  126 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGR  126 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccE
Confidence            78999999999764     999999995

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=92.28  E-value=0.082  Score=43.23  Aligned_cols=47  Identities=19%  Similarity=0.469  Sum_probs=29.6

Q ss_pred             cceEeccCCCCCc-------EecccccCCcccceec--cCCeecccccceeeeecccc
Q 033466           63 NSVVCADCDGNGA-------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        63 ~sivC~dC~GnGa-------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~~  111 (118)
                      ..+.|+.|+|.|.       ..|.+|.|+|.-..-.  +.|.+..-  ..|+.|.|.-
T Consensus       138 r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~--~~C~~C~G~G  193 (371)
T PRK14292        138 RLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQ--QPCPTCRGEG  193 (371)
T ss_pred             eeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEe--eecCCCcccc
Confidence            4577999999884       5688888888644322  22554433  5566665543

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=91.62  E-value=0.084  Score=44.91  Aligned_cols=24  Identities=46%  Similarity=1.265  Sum_probs=20.4

Q ss_pred             cceEeccCCCCCc-----EecccccCCcc
Q 033466           63 NSVVCADCDGNGA-----VLCSQCKGSGV   86 (118)
Q Consensus        63 ~sivC~dC~GnGa-----~~C~QCkG~GV   86 (118)
                      ..++|++|.|.|+     ..|+.|.|+|+
T Consensus       149 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~  177 (421)
T PTZ00037        149 KDVICANCEGHGGPKDAFVDCKLCNGQGI  177 (421)
T ss_pred             ccccccccCCCCCCCCCCccCCCCCCCCe
Confidence            5678999999996     36999999996

>PRK10767 chaperone protein DnaJ; Provisional

Probab=90.11  E-value=0.16  Score=41.49  Aligned_cols=37  Identities=30%  Similarity=0.656  Sum_probs=29.3

Q ss_pred             ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ...|+.|.|.|.+           .|.+|.|.|.-.            +..|.-|.|+..
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~  206 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII------------KDPCKKCHGQGR  206 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC------------CCCCCCCCCCce
Confidence            4689999999976           499999999631            256999998764

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=89.86  E-value=0.21  Score=43.91  Aligned_cols=67  Identities=25%  Similarity=0.409  Sum_probs=44.7

Q ss_pred             cCcceeeEEEeccCCCCccccc---eEeccCCCCCcEecccccCCcccc-----eeccC-----Ceecccccceeeeecc
Q 033466           43 VNRLHSIRVKAAANNGNTKRNS---VVCADCDGNGAVLCSQCKGSGVNA-----VDFFG-----GQFKAEAKGICYAGTA  109 (118)
Q Consensus        43 ~~~~~sl~~KAt~~~~~tKp~s---ivC~dC~GnGa~~C~QCkG~GVN~-----~D~f~-----G~fKag~~~~CWlc~g  109 (118)
                      .+|+.-+.+-.++  +-.-|+|   .-|..|.|.|+..|.-|-|+|-|+     .=|+-     -.-|+|..++|.+|-|
T Consensus       165 ~~~gp~mf~~~~~--~~~vphs~~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G  242 (406)
T KOG2813|consen  165 CSRGPGMFSGVAH--PAVVPHSMIVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHG  242 (406)
T ss_pred             ccCCCCccccccc--ceeccchHhhhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccC
Confidence            3345444444444  2223333   359999999999999999999654     33332     2348888899999988


Q ss_pred             cc
Q 033466          110 ME  111 (118)
Q Consensus       110 ~~  111 (118)
                      +-
T Consensus       243 ~G  244 (406)
T KOG2813|consen  243 RG  244 (406)
T ss_pred             CC
Confidence            64

>PRK14291 chaperone protein DnaJ; Provisional

Probab=87.94  E-value=0.28  Score=40.63  Aligned_cols=36  Identities=33%  Similarity=0.843  Sum_probs=28.7

Q ss_pred             ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      -..|+.|.|.|.+           .|..|.|+|+  +           +..|--|.|+..
T Consensus       173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~--~-----------~~~C~~C~G~g~  219 (382)
T PRK14291        173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV--L-----------REPCSKCNGRGL  219 (382)
T ss_pred             CccCCCCCCceEEEEecceEEEEecCCCCCCceE--E-----------ccCCCCCCCCce
Confidence            4679999999975           7999999995  2           256999988653

>PRK14287 chaperone protein DnaJ; Provisional

Probab=85.08  E-value=0.47  Score=39.24  Aligned_cols=36  Identities=28%  Similarity=0.744  Sum_probs=27.6

Q ss_pred             ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033466           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      ...|+.|.|.|.+               .|..|.|+|.-.            +..|-+|.|+.
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g  205 (371)
T PRK14287        155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII------------KQKCATCGGKG  205 (371)
T ss_pred             CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc------------cccCCCCCCee
Confidence            3579999999853               699999999642            25688888854

>PRK14282 chaperone protein DnaJ; Provisional

Probab=84.97  E-value=0.57  Score=38.53  Aligned_cols=36  Identities=28%  Similarity=0.709  Sum_probs=27.6

Q ss_pred             ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033466           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      -..|+.|.|.|.+               .|..|.|.|.-.            +..|--|.|+.
T Consensus       169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g  219 (369)
T PRK14282        169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP------------GEYCHECGGSG  219 (369)
T ss_pred             CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC------------CCCCCCCCCce
Confidence            3579999999965               589999998532            35688888865

>PRK14293 chaperone protein DnaJ; Provisional

Probab=84.18  E-value=0.57  Score=38.60  Aligned_cols=36  Identities=31%  Similarity=0.720  Sum_probs=25.9

Q ss_pred             ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033466           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      ...|+.|.|+|.+               .|.+|.|.|.=            -+..|.-|.|+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~------------~~~~C~~C~G~g  210 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV------------IEDPCDACGGQG  210 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE------------eccCCCCCCCCc
Confidence            4679999999864               58888888841            125688888754

>PRK14284 chaperone protein DnaJ; Provisional

Probab=83.71  E-value=0.68  Score=38.45  Aligned_cols=37  Identities=27%  Similarity=0.617  Sum_probs=28.8

Q ss_pred             ceEeccCCCCCc-----------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           64 SVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        64 sivC~dC~GnGa-----------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ...|+.|.|.|.           ..|.+|.|+|.-.            +..|--|.|+..
T Consensus       175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~  222 (391)
T PRK14284        175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI------------TDPCSVCRGQGR  222 (391)
T ss_pred             CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc------------CCcCCCCCCcce
Confidence            468999999998           4799999998532            256888988643

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=83.27  E-value=0.65  Score=39.99  Aligned_cols=11  Identities=36%  Similarity=1.159  Sum_probs=6.3

Q ss_pred             ceEeccCCCCC
Q 033466           64 SVVCADCDGNG   74 (118)
Q Consensus        64 sivC~dC~GnG   74 (118)
                      -..|+.|.|+|
T Consensus       159 ~~tC~tC~G~G  169 (371)
T COG0484         159 PKTCPTCNGSG  169 (371)
T ss_pred             CCcCCCCCCcC
Confidence            44566666666

>PRK14279 chaperone protein DnaJ; Provisional

Probab=82.90  E-value=0.56  Score=39.12  Aligned_cols=36  Identities=28%  Similarity=0.792  Sum_probs=28.3

Q ss_pred             ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033466           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      ...|+.|.|.|.+           .|.+|.|+|.-.            +..|--|.|+.
T Consensus       190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~g  236 (392)
T PRK14279        190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII------------EDPCEECKGTG  236 (392)
T ss_pred             CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe------------CCcCCCCCCCe
Confidence            4679999999975           699999999632            25688888864

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=82.21  E-value=0.82  Score=37.03  Aligned_cols=37  Identities=27%  Similarity=0.608  Sum_probs=24.9

Q ss_pred             ceEeccCCCCCc---------------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           64 SVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        64 sivC~dC~GnGa---------------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ...|+.|.|+|.               ..|..|.|.|.=.            +..|--|.|+..
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~  211 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII------------KEPCSTCKGKGR  211 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec------------CCCCCCCCCCcE
Confidence            467888888884               3588888887421            235777777653

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14298 chaperone protein DnaJ; Provisional

Probab=81.97  E-value=0.75  Score=38.21  Aligned_cols=36  Identities=31%  Similarity=0.682  Sum_probs=27.3

Q ss_pred             eEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           65 VVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        65 ivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ..|+.|.|.|.+               .|..|.|+|.-.            +..|--|.|+..
T Consensus       159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~  209 (377)
T PRK14298        159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI------------ESPCPVCSGTGK  209 (377)
T ss_pred             CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc------------CCCCCCCCCccE
Confidence            679999999964               699999999632            245888888654

>PRK14294 chaperone protein DnaJ; Provisional

Probab=81.66  E-value=0.84  Score=37.51  Aligned_cols=37  Identities=27%  Similarity=0.682  Sum_probs=28.0

Q ss_pred             ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ...|+.|.|.|.+           .|.+|.|.|.-.            +..|--|.|+..
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~  208 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI------------VSPCKTCHGQGR  208 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec------------CcCCCCCCCceE
Confidence            4689999999964           699999999632            256888888553

>PRK14288 chaperone protein DnaJ; Provisional

Probab=81.36  E-value=0.89  Score=37.59  Aligned_cols=37  Identities=32%  Similarity=0.709  Sum_probs=27.7

Q ss_pred             cceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033466           63 NSVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        63 ~sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      ....|+.|.|+|.+           .|.+|.|+|.-.            +..|--|.|..
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g  202 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII------------KTPCQACKGKT  202 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc------------cccCccCCCcc
Confidence            34579999999965           599999999632            24588888863

>PRK14292 chaperone protein DnaJ; Provisional

Probab=81.20  E-value=1.1  Score=36.82  Aligned_cols=37  Identities=30%  Similarity=0.662  Sum_probs=28.1

Q ss_pred             ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ...|+.|.|.|.+               .|..|.|+|.-.            +..|--|.|+..
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~  208 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII------------TDPCTVCRGRGR  208 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec------------CCCCCCCCCceE
Confidence            4679999999865               499999998641            367888888654

>PRK14290 chaperone protein DnaJ; Provisional

Probab=80.94  E-value=0.84  Score=37.50  Aligned_cols=38  Identities=24%  Similarity=0.617  Sum_probs=28.2

Q ss_pred             cceEeccCCCCCc---------------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           63 NSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        63 ~sivC~dC~GnGa---------------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ....|+.|.|.|.               ..|.+|.|.|+=            .+..|--|.|+..
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~------------~~~~C~~C~G~g~  216 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI------------PEEKCPRCNGTGT  216 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE------------ccCCCCCCCCcee
Confidence            4567999999995               479999998852            1367888887754

>PRK14286 chaperone protein DnaJ; Provisional

Probab=80.89  E-value=0.79  Score=37.93  Aligned_cols=36  Identities=31%  Similarity=0.812  Sum_probs=25.7

Q ss_pred             eEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           65 VVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        65 ivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ..|+.|.|.|.+           .|.+|.|+|.-.            +..|--|.|+..
T Consensus       168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~  214 (372)
T PRK14286        168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI------------SNPCKTCGGQGL  214 (372)
T ss_pred             ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe------------cccCCCCCCCcE
Confidence            679999999865           688888888542            245777777543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=80.81  E-value=0.91  Score=37.47  Aligned_cols=37  Identities=32%  Similarity=0.706  Sum_probs=26.8

Q ss_pred             ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ...|+.|.|.|.+           .|.+|.|.|.=.            +..|--|.|+..
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~  209 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII------------KNPCKKCHGMGR  209 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe------------CCCCCCCCCceE
Confidence            4679999999876           588888888431            255777877654

>PRK14297 chaperone protein DnaJ; Provisional

Probab=80.62  E-value=0.8  Score=37.81  Aligned_cols=36  Identities=28%  Similarity=0.707  Sum_probs=26.7

Q ss_pred             ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033466           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME  111 (118)
Q Consensus        64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~  111 (118)
                      ...|+.|.|.|.+               .|..|.|.|.=.            +..|--|.|+.
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g  215 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI------------EDPCNKCHGKG  215 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc------------CCCCCCCCCCe
Confidence            4679999999865               599999988531            24688888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.07
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	96.92
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	95.42
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	95.07
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	94.1
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	93.33
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	91.91
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	86.15

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.07  E-value=0.00029  Score=46.93  Aligned_cols=47  Identities=26%  Similarity=0.590  Sum_probs=32.8

Q ss_pred             ccceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           62 RNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        62 p~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      +....|+.|+|.|+      ..|..|.|+|.-....  |.|..-  ..|..|.|.-+
T Consensus        26 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~~~~~--~~C~~C~G~G~   78 (104)
T 2ctt_A           26 NIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GPFVMR--STCRRCGGRGS   78 (104)
T ss_dssp             SCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TTEEEE--EECSSSSSSSE
T ss_pred             eeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CCEEEE--EECCcCCCcce
Confidence            35688999999985      6799999999754443  556433  56777766543

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=96.92  E-value=0.00043  Score=43.47  Aligned_cols=46  Identities=28%  Similarity=0.550  Sum_probs=28.4

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ....|+.|.|.|+      ..|..|.|+|.-....  |.|..-  ..|..|.|.-+
T Consensus        10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~--~~C~~C~G~G~   61 (79)
T 1exk_A           10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--GFFAVQ--QTCPHCQGRGT   61 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--TTEEEE--EECTTTTTSSE
T ss_pred             cceECCCCcccccCCCccCCCCCCCcCeEEEEEEc--CCCEEe--eECcCCCCccE
Confidence            4567888888885      5788888888643322  445322  45666665543

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=95.42  E-value=0.0074  Score=37.76  Aligned_cols=26  Identities=35%  Similarity=0.931  Sum_probs=22.5

Q ss_pred             ceEeccCCCCCc---EecccccCCcccce
Q 033466           64 SVVCADCDGNGA---VLCSQCKGSGVNAV   89 (118)
Q Consensus        64 sivC~dC~GnGa---~~C~QCkG~GVN~~   89 (118)
                      ...|++|.|.|.   ..|..|.|.|+-..
T Consensus         9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~   37 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPCPKCLGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred             eccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence            568999999998   68999999997543

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=95.07  E-value=0.0064  Score=46.21  Aligned_cols=26  Identities=31%  Similarity=1.083  Sum_probs=20.6

Q ss_pred             cceEeccCCCCCc-----EecccccCCcccc
Q 033466           63 NSVVCADCDGNGA-----VLCSQCKGSGVNA   88 (118)
Q Consensus        63 ~sivC~dC~GnGa-----~~C~QCkG~GVN~   88 (118)
                      ....|+.|.|+|+     ..|+.|.|+|+-.
T Consensus        37 r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~   67 (248)
T 1nlt_A           37 KQILCKECEGRGGKKGAVKKCTSCNGQGIKF   67 (248)
T ss_dssp             EEEECTTTTTCSBSTTTCCCCTTSSSSSCEE
T ss_pred             EEEeCCCCcCccCCCCCCccCCCCCCCcEEE
Confidence            3568999999995     5699999999643

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=94.10  E-value=0.024  Score=35.30  Aligned_cols=37  Identities=30%  Similarity=0.705  Sum_probs=26.2

Q ss_pred             ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ...|+.|.|.|.+           .|..|.|+|.-.            ++.|..|.|..+
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~G~   75 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI------------KDPCNKCHGHGR   75 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC------------SSBCGGGTTSSE
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC------------CCcCCCCCCeEE
Confidence            3578888888854           788888888532            256777777654

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=93.33  E-value=0.043  Score=34.24  Aligned_cols=26  Identities=35%  Similarity=0.888  Sum_probs=21.5

Q ss_pred             cceEeccCCCCCcE---ecccccCCcccc
Q 033466           63 NSVVCADCDGNGAV---LCSQCKGSGVNA   88 (118)
Q Consensus        63 ~sivC~dC~GnGa~---~C~QCkG~GVN~   88 (118)
                      -+..|+.|.|.|++   .|..|.|+|.-.
T Consensus         8 ~~~~C~~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A            8 LEVACPKCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             HEEECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred             ccccCCCCcceeccCCCCCccCCCCccEE
Confidence            46789999999965   799999999643

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.91  E-value=0.071  Score=35.25  Aligned_cols=37  Identities=24%  Similarity=0.525  Sum_probs=27.1

Q ss_pred             ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ...|+.|.|.|.+           .|..|.|+|.-.            ++.|--|.|..+
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~   92 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII------------ISPCVVCRGAGQ   92 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC------------SSCCSSSSSCSE
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC------------CCcCCCCCCeeE
Confidence            4689999999854           799999988421            256888877543

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=86.15  E-value=0.24  Score=37.56  Aligned_cols=21  Identities=38%  Similarity=1.091  Sum_probs=14.0

Q ss_pred             eEeccCCCCCcE---------------ecccccCCc
Q 033466           65 VVCADCDGNGAV---------------LCSQCKGSG   85 (118)
Q Consensus        65 ivC~dC~GnGa~---------------~C~QCkG~G   85 (118)
                      ..|+.|.|.|.+               .|..|.|+|
T Consensus        55 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G   90 (248)
T 1nlt_A           55 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTG   90 (248)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSS
T ss_pred             ccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcC
Confidence            567777777743               466666666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	96.86
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	96.75
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	93.85
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	93.62

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00012  Score=45.67  Aligned_cols=25  Identities=32%  Similarity=1.116  Sum_probs=20.3

Q ss_pred             ceEeccCCCCCcE-----ecccccCCcccc
Q 033466           64 SVVCADCDGNGAV-----LCSQCKGSGVNA   88 (118)
Q Consensus        64 sivC~dC~GnGa~-----~C~QCkG~GVN~   88 (118)
                      .++|+.|+|+|+.     .|+.|.|+|.-.
T Consensus         2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~   31 (74)
T d1nlta3           2 QILCKECEGRGGKKGAVKKCTSCNGQGIKF   31 (74)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEE
T ss_pred             ccCCcCCcccccCCCCCCCCCCCcceeeee
Confidence            5899999999954     599999999644

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00024  Score=44.48  Aligned_cols=46  Identities=30%  Similarity=0.589  Sum_probs=32.8

Q ss_pred             cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033466           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL  112 (118)
Q Consensus        63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~  112 (118)
                      ....|++|.|+|+      ..|.+|.|+|.  +-...|.|..-  ..|-.|.|.-.
T Consensus        10 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~--v~~~~g~~~~~--~~C~~C~G~G~   61 (79)
T d1exka_          10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQ--VQMRQGFFAVQ--QTCPHCQGRGT   61 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSE--EEEEETTEEEE--EECTTTTTSSE
T ss_pred             eeccCCCCcCcccCCCccceeCCCccceeE--EEEecccceee--EECcccCccee
Confidence            5678999999985      56999999995  34455555443  56777777543

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.85  E-value=0.0078  Score=37.09  Aligned_cols=22  Identities=36%  Similarity=0.995  Sum_probs=12.5

Q ss_pred             eEeccCCCCCcE-----ecccccCCcc
Q 033466           65 VVCADCDGNGAV-----LCSQCKGSGV   86 (118)
Q Consensus        65 ivC~dC~GnGa~-----~C~QCkG~GV   86 (118)
                      ..|+.|.|.|-+     .|..|+|+||
T Consensus        45 ~~C~~C~G~G~~i~~~~~C~~C~G~g~   71 (74)
T d1nlta3          45 TECDVCHGTGDIIDPKDRCKSCNGKKV   71 (74)
T ss_dssp             CSCTTCSSSSSCCCTTSBCSSSTTSCE
T ss_pred             EECccCccceEEeCCCCCCCCCCCeeE
Confidence            346666666633     4666666665

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.015  Score=35.87  Aligned_cols=20  Identities=40%  Similarity=1.285  Sum_probs=10.2

Q ss_pred             EeccCCCCCcE---ecccccCCc
Q 033466           66 VCADCDGNGAV---LCSQCKGSG   85 (118)
Q Consensus        66 vC~dC~GnGa~---~C~QCkG~G   85 (118)
                      .|+.|.|.|-+   .|..|.|+|
T Consensus        52 ~C~~C~G~G~~i~~~C~~C~G~G   74 (79)
T d1exka_          52 TCPHCQGRGTLIKDPCNKCHGHG   74 (79)
T ss_dssp             ECTTTTTSSEECSSBCGGGTTSS
T ss_pred             ECcccCcceeECCCCCCCCCCce
Confidence            45555555533   455555555