BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033467
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana
GN=MUB3 PE=1 SV=1
Length = 118
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 110/118 (93%)
Query: 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
MP+EE IDIKFRLYDGSDIGPFRYS+ASTVD LKQR+VSDWPKGKT+VPK + E+KLISS
Sbjct: 1 MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118
GKILENNKTVGQCK P+G++ GGVI+MHVVVQPSLAK+KTEKK+D +P+ ++C+C+IL
Sbjct: 61 GKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118
>sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana
GN=MUB4 PE=1 SV=1
Length = 120
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/120 (60%), Positives = 98/120 (81%), Gaps = 2/120 (1%)
Query: 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
MP+E+L+++KFRLYDGSD+GPF+YS +TV MLK+RIVS+WPK K IVPK+ ++IKLI++
Sbjct: 1 MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINA 60
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKI--DDSPRKIVCSCSIL 118
GKILEN KTV QCK P+ ++P VI MHVVVQ S K + EKKI +++P++ CSC+I+
Sbjct: 61 GKILENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKKIEKEEAPQRSFCSCTIM 120
>sp|Q7XRU4|MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp.
japonica GN=MUB4 PE=2 SV=2
Length = 135
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Query: 10 KFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68
KFRL+DGSDIGP R ++ A+TV LK R+V+DWPK KTIVPK ++KLIS GKILEN+K
Sbjct: 26 KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85
Query: 69 TVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118
+ QC+ P+G++P I MHVVVQPS AK+K +KK + P+ CSC+IL
Sbjct: 86 NIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKKTNKLPKTTRCSCTIL 135
>sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp.
japonica GN=MUB3 PE=3 SV=1
Length = 119
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 88/115 (76%)
Query: 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
+E I++KFRL+DG+DIGP +Y ++TV LK+ I++ WP+ K I PK V ++KLI++G+I
Sbjct: 5 KEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRI 64
Query: 64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118
LENN+T+ + ++P GEVPGGVI MHVVV+P +EK++ +SP++ C C+IL
Sbjct: 65 LENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
>sp|Q9SH14|MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana
GN=MUB5 PE=1 SV=1
Length = 120
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 84/120 (70%), Gaps = 2/120 (1%)
Query: 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
M DE+LI++KFRL DG+DIGP +YS TV LK++I++ WPK K PK + E+KLI+
Sbjct: 1 MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60
Query: 61 GKILENNKTVGQCK--IPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118
GKILENNKT+ + + I GE+PG V MHVV++P L + K EK +D PRK C C IL
Sbjct: 61 GKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120
>sp|Q8GWJ6|MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana
GN=MUB6 PE=1 SV=1
Length = 119
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 87/117 (74%), Gaps = 2/117 (1%)
Query: 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62
+E+ I++KFRL DG+DIGP +Y+ + TV LK++++S WPK K PK V ++KLI++GK
Sbjct: 4 EEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGK 63
Query: 63 ILENNKTVGQCKIPYGEVPGGVIIMHVVVQ-PSLAKTKTEKKIDDSPRKIVCSCSIL 118
ILENN+T+ + ++P E+PG +I MH+V++ P+L K K+EK +D P K C C+IL
Sbjct: 64 ILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDK-KSEKLQNDPPMKNRCVCTIL 119
>sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp.
japonica GN=MUB1 PE=3 SV=1
Length = 119
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Query: 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
+E +IKFRL DG+DIGP RY +ASTV LK+ IV+ WPK K P+ V ++KLI++GKI
Sbjct: 6 QEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKI 65
Query: 64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118
LENNKT+ +CK P + G+ MHVVV+ + ++ K + P+ C CSI+
Sbjct: 66 LENNKTLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119
>sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana
GN=MUB1 PE=1 SV=1
Length = 117
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Query: 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66
++IKFRL DGSDIGP + A+TV LK+ ++S+WP+ K PK V E+KLIS+GK+LEN
Sbjct: 8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67
Query: 67 NKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118
+KTV + P + G V MHV++Q + T+ EKK P+ C CS++
Sbjct: 68 SKTVKDYRSPVSNLAGAVTTMHVIIQAPV--TEKEKKPKGDPKMNKCVCSVM 117
>sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana
GN=MUB2 PE=1 SV=1
Length = 124
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 75/115 (65%), Gaps = 3/115 (2%)
Query: 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
++ ++IKFRL DGSDIGP + A+TV LK+ +V+ WP+ K PK V ++KLIS+G+I
Sbjct: 5 KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRI 64
Query: 64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKI---DDSPRKIVCSC 115
LENNKTVG C+ P G G V MHV++Q + + + +KK D K VC C
Sbjct: 65 LENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVCLC 119
>sp|Q67UI2|MUB2_ORYSJ Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp.
japonica GN=MUB2 PE=2 SV=1
Length = 126
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 79/119 (66%), Gaps = 9/119 (7%)
Query: 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64
E ++++FRL DGSDIGP + A+TV LK+ +++ WP+GK I P+ V ++ +I++G++L
Sbjct: 12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71
Query: 65 ENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPR-----KIVCSCSIL 118
ENN+T+ + + E P G I MHVVV+ +++ E+++ P+ +I C C+IL
Sbjct: 72 ENNRTLAESRNLAAESPEGPITMHVVVR----RSRPERRVKQPPKARPPERIGCGCTIL 126
>sp|Q5BJT2|UBL3_RAT Ubiquitin-like protein 3 OS=Rattus norvegicus GN=Ubl3 PE=2 SV=1
Length = 117
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP----KGKTIVPKAVTEIKLISS 60
++I+++ L G F +S + + + + +WP + + P ++LI
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNI---LRLIYQ 63
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118
G+ L N T+G K+P+G+ +MH+V + +L + ++ + + C IL
Sbjct: 64 GRFLHGNVTLGALKLPFGK----TTVMHLVARETLPEPNSQGQRNREKTGESNCCVIL 117
>sp|Q9Z2M6|UBL3_MOUSE Ubiquitin-like protein 3 OS=Mus musculus GN=Ubl3 PE=1 SV=1
Length = 117
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP----KGKTIVPKAVTEIKLISS 60
++I+++ L G F +S + + + + +WP + + P ++LI
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNI---LRLIYQ 63
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118
G+ L N T+G K+P+G+ +MH+V + +L + ++ + + C IL
Sbjct: 64 GRFLHGNVTLGALKLPFGK----TTVMHLVARETLPEPNSQGQRNREKTGESNCCVIL 117
>sp|O95164|UBL3_HUMAN Ubiquitin-like protein 3 OS=Homo sapiens GN=UBL3 PE=1 SV=1
Length = 117
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP----KGKTIVPKAVTEIKLISS 60
++I+++ L G F +S + + + + +WP + + P ++LI
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNI---LRLIYQ 63
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118
G+ L N T+G K+P+G+ +MH+V + +L + ++ + + C IL
Sbjct: 64 GRFLHGNVTLGALKLPFGK----TTVMHLVARETLPEPNSQGQRNREKTGESNCCVIL 117
>sp|Q2TA46|UBL3_BOVIN Ubiquitin-like protein 3 OS=Bos taurus GN=UBL3 PE=3 SV=1
Length = 117
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP----KGKTIVPKAVTEIKLISS 60
++I+++ L G F +S + + + + +WP + + P ++LI
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNI---LRLIYQ 63
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118
G+ L N T+G K+P+G+ +MH+V + +L + ++ + + C IL
Sbjct: 64 GRFLHGNVTLGALKLPFGK----TTVMHLVARETLPEPNSQGQRNREKTGESNCCVIL 117
>sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
Length = 398
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 53 TEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTK-TEKKI 104
++IKLI SGK+L+++KTV +C + G+ ++ +V Q KTK TE I
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQ-----VVFMVSQKKSTKTKVTEPPI 87
>sp|A8ZUR6|SYH_DESOH Histidine--tRNA ligase OS=Desulfococcus oleovorans (strain DSM 6200
/ Hxd3) GN=hisS PE=3 SV=1
Length = 423
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 52 VTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87
V + ++ + IL N KT Q +IP G+VPG +I M
Sbjct: 381 VGDAEMETGSLILRNMKTKAQQEIPLGDVPGALITM 416
>sp|Q58689|Y1293_METJA Uncharacterized protein MJ1293 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1293 PE=4 SV=1
Length = 231
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 54 EIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88
+I+LI +GK NK +G KIP EVPG I++
Sbjct: 182 KIELIKTGK----NKYLGLFKIPENEVPGQYFIIY 212
>sp|Q83GX1|PUR7_TROWT Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Tropheryma whipplei (strain Twist) GN=purC PE=3 SV=1
Length = 305
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPK---GKTIVPKAVTEIKL 57
+ DE L R +D + G F +D ++ V DW K GK I P+ +T ++L
Sbjct: 225 LADELLTADSARYWDINSWGQFDLPIERRLDSFDKQAVRDWVKCNSGKNITPQNITPLRL 284
>sp|Q83IB9|PUR7_TROW8 Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Tropheryma whipplei (strain TW08/27) GN=purC PE=3
SV=1
Length = 305
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPK---GKTIVPKAVTEIKL 57
+ DE L R +D + G F +D ++ V DW K GK I P+ +T ++L
Sbjct: 225 LADELLTADSARYWDINSWGQFDLPIERRLDSFDKQAVRDWVKCNSGKNITPQNITPLRL 284
>sp|B3E422|ERA_GEOLS GTPase Era OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 /
SZ) GN=era PE=3 SV=1
Length = 296
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV-TEI--KLISSGKILENNK 68
RLYD +I P S S ++ L + P+G+ + P + T++ K I + I E
Sbjct: 142 RLYDFPEIIPISAQSGSNIERLVDLVREHLPEGEALFPDDILTDLPEKFIVAELIREKVF 201
Query: 69 TVGQCKIPYG 78
+ ++PYG
Sbjct: 202 RLTNREVPYG 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,138,398
Number of Sequences: 539616
Number of extensions: 1757595
Number of successful extensions: 4234
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4214
Number of HSP's gapped (non-prelim): 31
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)