Query 033467
Match_columns 118
No_of_seqs 131 out of 1023
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:36:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01814 NTGP5 Ubiquitin-like N 100.0 2.7E-36 5.9E-41 207.4 9.1 112 4-115 2-113 (113)
2 PF13881 Rad60-SLD_2: Ubiquiti 100.0 6.9E-33 1.5E-37 191.2 12.0 111 5-116 1-111 (111)
3 cd01807 GDX_N ubiquitin-like d 99.8 4.6E-19 1E-23 113.2 8.1 71 8-94 2-74 (74)
4 cd01790 Herp_N Homocysteine-re 99.8 3.8E-19 8.2E-24 116.1 7.3 74 7-91 2-78 (79)
5 cd01794 DC_UbP_C dendritic cel 99.8 7.3E-19 1.6E-23 112.0 6.8 67 9-91 1-69 (70)
6 cd01793 Fubi Fubi ubiquitin-li 99.8 4E-18 8.8E-23 108.9 7.4 71 9-95 3-73 (74)
7 cd01797 NIRF_N amino-terminal 99.8 5.1E-18 1.1E-22 110.2 7.9 73 8-95 2-77 (78)
8 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 9.3E-18 2E-22 107.8 7.8 71 7-91 2-72 (73)
9 cd01798 parkin_N amino-termina 99.7 8.8E-18 1.9E-22 106.1 7.1 68 9-92 1-70 (70)
10 cd01802 AN1_N ubiquitin-like d 99.7 1.5E-17 3.2E-22 113.3 8.6 77 5-95 26-102 (103)
11 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.5E-17 3.2E-22 106.3 7.2 71 9-95 1-73 (74)
12 PTZ00044 ubiquitin; Provisiona 99.7 2.7E-17 6E-22 104.9 8.2 72 8-95 2-75 (76)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 7.4E-17 1.6E-21 102.3 8.2 72 8-95 2-75 (76)
14 cd01808 hPLIC_N Ubiquitin-like 99.7 5.7E-17 1.2E-21 102.7 7.5 71 7-92 1-71 (71)
15 cd01804 midnolin_N Ubiquitin-l 99.7 8.5E-17 1.8E-21 104.1 8.2 73 7-94 2-74 (78)
16 PF00240 ubiquitin: Ubiquitin 99.7 1.7E-16 3.7E-21 99.3 9.1 68 12-93 1-68 (69)
17 cd01800 SF3a120_C Ubiquitin-li 99.7 1E-16 2.2E-21 103.1 7.0 68 15-98 6-75 (76)
18 cd01803 Ubiquitin Ubiquitin. U 99.7 1.9E-16 4.1E-21 100.4 8.0 72 8-95 2-75 (76)
19 cd01809 Scythe_N Ubiquitin-lik 99.7 2.1E-16 4.6E-21 99.2 7.8 72 7-92 1-72 (72)
20 cd01805 RAD23_N Ubiquitin-like 99.7 2.7E-16 5.8E-21 100.4 8.1 74 8-93 2-75 (77)
21 cd01792 ISG15_repeat1 ISG15 ub 99.7 2.1E-16 4.6E-21 102.5 7.3 73 7-93 3-77 (80)
22 cd01796 DDI1_N DNA damage indu 99.7 3.4E-16 7.4E-21 99.6 6.5 67 9-89 1-69 (71)
23 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 7.9E-16 1.7E-20 99.5 4.7 56 26-91 19-74 (75)
24 KOG0004 Ubiquitin/40S ribosoma 99.6 8E-16 1.7E-20 110.9 4.8 87 11-111 5-91 (156)
25 cd01812 BAG1_N Ubiquitin-like 99.6 5.1E-15 1.1E-19 92.9 7.1 67 7-90 1-69 (71)
26 KOG0005 Ubiquitin-like protein 99.6 1.5E-15 3.2E-20 94.1 4.2 69 8-90 2-70 (70)
27 KOG0010 Ubiquitin-like protein 99.6 4.1E-15 8.8E-20 123.0 7.2 76 6-96 15-90 (493)
28 cd01763 Sumo Small ubiquitin-r 99.5 1.1E-13 2.4E-18 91.2 9.4 76 4-95 9-86 (87)
29 TIGR00601 rad23 UV excision re 99.5 1.4E-13 2.9E-18 112.1 9.0 67 8-79 2-68 (378)
30 cd01813 UBP_N UBP ubiquitin pr 99.5 8.3E-14 1.8E-18 89.5 6.2 65 9-90 3-72 (74)
31 smart00213 UBQ Ubiquitin homol 99.4 3.6E-13 7.9E-18 82.0 6.6 62 8-78 2-63 (64)
32 KOG0003 Ubiquitin/60s ribosoma 99.4 2.8E-14 6.1E-19 97.8 0.0 71 12-96 6-76 (128)
33 cd01799 Hoil1_N Ubiquitin-like 99.4 1.9E-12 4.2E-17 83.4 7.2 68 8-90 4-73 (75)
34 cd01769 UBL Ubiquitin-like dom 99.3 9.2E-12 2E-16 76.6 6.9 67 11-91 2-68 (69)
35 KOG0011 Nucleotide excision re 99.3 7.6E-12 1.6E-16 99.6 6.5 73 8-90 2-74 (340)
36 cd01795 USP48_C USP ubiquitin- 99.2 2.8E-11 6.1E-16 82.0 6.3 70 11-95 10-80 (107)
37 KOG4248 Ubiquitin-like protein 99.2 6.5E-11 1.4E-15 104.8 6.7 77 7-100 3-81 (1143)
38 PF11976 Rad60-SLD: Ubiquitin- 99.1 5E-10 1.1E-14 70.5 7.3 69 7-91 1-72 (72)
39 cd01789 Alp11_N Ubiquitin-like 99.1 1.1E-09 2.4E-14 71.7 8.5 72 7-91 2-80 (84)
40 PF10302 DUF2407: DUF2407 ubiq 99.0 1.3E-09 2.9E-14 73.6 7.9 88 9-117 3-94 (97)
41 cd01801 Tsc13_N Ubiquitin-like 98.9 3.1E-09 6.8E-14 68.3 5.4 60 18-89 12-74 (77)
42 PLN02560 enoyl-CoA reductase 98.8 1.3E-08 2.8E-13 81.1 7.4 65 8-78 2-75 (308)
43 KOG0001 Ubiquitin and ubiquiti 98.8 8.8E-08 1.9E-12 58.1 8.7 68 11-94 4-73 (75)
44 PF14560 Ubiquitin_2: Ubiquiti 98.6 2.5E-07 5.4E-12 60.5 8.2 71 7-90 2-81 (87)
45 cd01788 ElonginB Ubiquitin-lik 98.6 1.5E-07 3.2E-12 65.2 7.0 78 6-92 2-80 (119)
46 KOG0006 E3 ubiquitin-protein l 98.6 1.1E-07 2.4E-12 76.3 5.5 74 7-95 3-79 (446)
47 cd00196 UBQ Ubiquitin-like pro 98.4 2.2E-06 4.8E-11 49.0 6.7 65 12-90 3-67 (69)
48 PF11543 UN_NPL4: Nuclear pore 98.1 6.9E-06 1.5E-10 53.5 5.4 66 5-79 3-73 (80)
49 PF00789 UBX: UBX domain; Int 98.1 8.1E-05 1.8E-09 47.7 9.9 74 3-89 3-80 (82)
50 cd01770 p47_UBX p47-like ubiqu 97.7 0.0005 1.1E-08 44.5 7.9 66 6-78 4-72 (79)
51 cd01774 Faf1_like2_UBX Faf1 ik 97.5 0.0015 3.3E-08 42.9 8.3 66 4-78 2-77 (85)
52 cd01811 OASL_repeat1 2'-5' oli 97.4 0.002 4.3E-08 41.7 7.6 63 7-78 1-68 (80)
53 cd01767 UBX UBX (ubiquitin reg 97.3 0.0019 4.1E-08 41.0 7.6 64 6-78 2-70 (77)
54 cd01772 SAKS1_UBX SAKS1-like U 97.3 0.0038 8.2E-08 40.2 8.7 66 4-78 2-72 (79)
55 KOG4495 RNA polymerase II tran 97.3 0.00071 1.5E-08 45.9 5.3 74 7-89 3-79 (110)
56 PF08817 YukD: WXG100 protein 97.2 0.0018 3.8E-08 41.6 6.0 72 6-79 2-74 (79)
57 smart00166 UBX Domain present 97.2 0.0059 1.3E-07 39.1 8.4 66 5-78 3-73 (80)
58 KOG4583 Membrane-associated ER 97.0 0.00023 5E-09 57.6 1.2 81 4-94 7-89 (391)
59 KOG1872 Ubiquitin-specific pro 97.0 0.002 4.3E-08 54.0 6.1 64 16-92 11-75 (473)
60 COG5417 Uncharacterized small 96.4 0.033 7.2E-07 36.1 7.3 71 6-79 6-76 (81)
61 cd01771 Faf1_UBX Faf1 UBX doma 96.3 0.048 1E-06 35.3 8.1 65 4-78 2-72 (80)
62 PF13019 Telomere_Sde2: Telome 96.3 0.041 8.9E-07 40.4 8.5 82 7-97 1-89 (162)
63 KOG1769 Ubiquitin-like protein 96.2 0.073 1.6E-06 36.1 8.7 67 5-79 19-85 (99)
64 PF15044 CLU_N: Mitochondrial 95.9 0.022 4.8E-07 36.6 5.0 58 24-93 1-59 (76)
65 COG5227 SMT3 Ubiquitin-like pr 95.3 0.15 3.1E-06 34.4 7.1 66 6-79 24-89 (103)
66 cd01773 Faf1_like1_UBX Faf1 ik 95.2 0.21 4.5E-06 32.7 7.6 64 5-78 4-73 (82)
67 KOG3493 Ubiquitin-like protein 94.8 0.0098 2.1E-07 37.6 0.3 55 16-78 11-65 (73)
68 KOG0013 Uncharacterized conser 94.2 0.051 1.1E-06 41.6 3.3 64 7-78 146-210 (231)
69 KOG3206 Alpha-tubulin folding 94.1 0.23 4.9E-06 38.1 6.6 58 21-91 16-80 (234)
70 KOG2086 Protein tyrosine phosp 92.8 0.28 6E-06 40.5 5.5 66 6-78 305-373 (380)
71 PF11470 TUG-UBL1: GLUT4 regul 90.1 1.6 3.5E-05 27.2 5.7 57 14-78 4-60 (65)
72 cd00754 MoaD Ubiquitin domain 88.6 3.6 7.7E-05 25.4 6.7 56 16-79 14-69 (80)
73 PF08337 Plexin_cytopl: Plexin 88.4 3.4 7.3E-05 35.7 8.3 83 5-93 188-290 (539)
74 PF09379 FERM_N: FERM N-termin 88.2 4.4 9.6E-05 25.0 8.2 71 11-92 1-77 (80)
75 smart00144 PI3K_rbd PI3-kinase 88.0 3.6 7.7E-05 27.8 6.8 69 5-74 16-87 (108)
76 smart00666 PB1 PB1 domain. Pho 86.6 4.1 8.8E-05 25.4 6.1 46 7-61 2-47 (81)
77 TIGR01682 moaD molybdopterin c 85.7 3.4 7.3E-05 26.0 5.4 56 15-79 13-69 (80)
78 PLN02799 Molybdopterin synthas 85.6 4.9 0.00011 25.3 6.1 56 15-79 16-71 (82)
79 PF10209 DUF2340: Uncharacteri 85.3 6.4 0.00014 27.7 6.9 56 23-78 21-100 (122)
80 PF08783 DWNN: DWNN domain; I 83.5 3.2 6.9E-05 26.6 4.5 32 9-40 1-33 (74)
81 TIGR01687 moaD_arch MoaD famil 83.1 9.4 0.0002 24.2 7.7 60 16-79 14-77 (88)
82 PF02597 ThiS: ThiS family; I 83.0 6.8 0.00015 23.9 5.8 51 21-78 15-65 (77)
83 PF00564 PB1: PB1 domain; Int 82.6 4.3 9.3E-05 25.3 4.9 47 7-61 2-48 (84)
84 KOG1639 Steroid reductase requ 81.7 2.6 5.7E-05 33.3 4.2 55 21-78 16-71 (297)
85 PRK08364 sulfur carrier protei 81.0 9.3 0.0002 23.6 5.9 43 21-79 17-59 (70)
86 smart00295 B41 Band 4.1 homolo 80.3 4.9 0.00011 28.8 5.1 36 5-41 2-37 (207)
87 PF14453 ThiS-like: ThiS-like 79.9 5.3 0.00012 24.4 4.3 40 20-72 8-47 (57)
88 cd06407 PB1_NLP A PB1 domain i 79.2 7.5 0.00016 25.1 5.2 33 10-42 2-34 (82)
89 cd06409 PB1_MUG70 The MUG70 pr 79.1 7.4 0.00016 25.6 5.2 33 9-42 3-35 (86)
90 PF02824 TGS: TGS domain; Int 76.9 7.3 0.00016 23.4 4.4 31 9-42 1-31 (60)
91 PF10790 DUF2604: Protein of U 74.7 19 0.00041 22.8 5.9 69 14-93 3-72 (76)
92 cd06406 PB1_P67 A PB1 domain i 74.4 14 0.00031 24.0 5.4 36 20-62 13-48 (80)
93 PRK06437 hypothetical protein; 72.9 17 0.00037 22.3 5.4 43 21-79 14-56 (67)
94 cd00565 ThiS ThiaminS ubiquiti 72.6 8.8 0.00019 23.1 4.0 47 21-79 8-54 (65)
95 PF12754 Blt1: Cell-cycle cont 72.1 1.2 2.7E-05 35.8 0.0 46 27-74 103-158 (309)
96 cd05992 PB1 The PB1 domain is 66.6 15 0.00033 22.5 4.3 33 8-42 2-35 (81)
97 PF11069 DUF2870: Protein of u 66.2 7.5 0.00016 26.3 2.8 22 56-78 3-24 (98)
98 cd01760 RBD Ubiquitin-like dom 64.2 22 0.00049 22.4 4.7 31 9-40 2-32 (72)
99 cd01787 GRB7_RA RA (RAS-associ 64.2 23 0.00049 23.3 4.8 59 7-73 3-68 (85)
100 KOG4147 Uncharacterized conser 62.7 46 0.00099 23.2 6.2 75 4-78 5-105 (127)
101 PF11620 GABP-alpha: GA-bindin 62.5 31 0.00068 22.9 5.2 65 21-96 6-70 (88)
102 KOG3391 Transcriptional co-rep 62.4 8 0.00017 27.9 2.5 33 59-97 108-141 (151)
103 PF14836 Ubiquitin_3: Ubiquiti 62.2 43 0.00093 22.1 7.3 52 19-78 15-72 (88)
104 PF14533 USP7_C2: Ubiquitin-sp 62.0 55 0.0012 24.5 7.3 50 20-73 36-90 (213)
105 COG5100 NPL4 Nuclear pore prot 60.1 71 0.0015 27.2 8.0 67 8-79 2-72 (571)
106 PF06234 TmoB: Toluene-4-monoo 60.1 47 0.001 21.9 7.3 57 21-78 18-76 (85)
107 cd01775 CYR1_RA Ubiquitin doma 59.8 51 0.0011 22.2 6.8 32 8-40 4-35 (97)
108 KOG0012 DNA damage inducible p 59.4 24 0.00053 29.2 5.2 55 18-79 13-69 (380)
109 KOG4250 TANK binding protein k 58.0 53 0.0011 29.6 7.3 46 10-65 318-365 (732)
110 PF02505 MCR_D: Methyl-coenzym 56.8 30 0.00064 25.3 4.7 42 21-73 78-120 (153)
111 KOG3439 Protein conjugation fa 55.8 58 0.0013 22.6 5.8 53 5-64 29-84 (116)
112 cd06396 PB1_NBR1 The PB1 domai 55.8 33 0.00071 22.3 4.4 32 11-42 3-36 (81)
113 PF00794 PI3K_rbd: PI3-kinase 55.6 56 0.0012 21.5 5.7 70 4-74 14-85 (106)
114 smart00455 RBD Raf-like Ras-bi 54.4 50 0.0011 20.5 5.0 49 9-65 2-52 (70)
115 PF08154 NLE: NLE (NUC135) dom 53.9 49 0.0011 20.2 6.3 55 7-66 2-59 (65)
116 cd06411 PB1_p51 The PB1 domain 53.5 30 0.00065 22.4 3.9 34 21-61 10-43 (78)
117 PF06200 tify: tify domain; I 52.5 17 0.00036 20.1 2.2 17 51-67 4-21 (36)
118 TIGR02958 sec_mycoba_snm4 secr 50.3 93 0.002 26.2 7.4 77 7-92 3-80 (452)
119 COG4055 McrD Methyl coenzyme M 49.9 56 0.0012 23.9 5.2 50 11-73 78-128 (165)
120 PRK11130 moaD molybdopterin sy 49.7 63 0.0014 20.2 5.2 21 22-42 19-40 (81)
121 PF02192 PI3K_p85B: PI3-kinase 49.5 18 0.0004 23.3 2.5 20 21-40 3-22 (78)
122 TIGR01683 thiS thiamine biosyn 49.3 50 0.0011 19.7 4.3 47 21-79 7-53 (64)
123 TIGR03260 met_CoM_red_D methyl 48.3 48 0.0011 24.1 4.7 42 21-73 77-118 (150)
124 cd06408 PB1_NoxR The PB1 domai 48.1 78 0.0017 20.8 6.0 34 9-42 3-36 (86)
125 PF14732 UAE_UbL: Ubiquitin/SU 46.6 53 0.0012 21.2 4.4 50 27-79 8-62 (87)
126 PF00788 RA: Ras association ( 45.7 59 0.0013 20.1 4.4 47 7-58 3-52 (93)
127 cd01817 RGS12_RBD Ubiquitin do 45.7 79 0.0017 20.2 5.1 30 10-40 3-32 (73)
128 KOG4146 Ubiquitin-like protein 45.6 93 0.002 21.0 5.6 36 5-40 3-48 (101)
129 PF04233 Phage_Mu_F: Phage Mu 44.1 13 0.00028 24.2 1.2 12 107-118 101-112 (112)
130 KOG0007 Splicing factor 3a, su 43.9 10 0.00023 30.5 0.8 47 14-70 290-339 (341)
131 cd01776 Rin1_RA Ubiquitin doma 41.4 1E+02 0.0023 20.3 7.1 36 7-42 2-38 (87)
132 KOG2689 Predicted ubiquitin re 39.4 47 0.001 26.6 3.8 35 5-40 209-243 (290)
133 PRK12385 fumarate reductase ir 39.2 96 0.0021 23.8 5.5 41 1-41 1-48 (244)
134 KOG1364 Predicted ubiquitin re 38.8 38 0.00082 27.9 3.3 64 8-78 279-347 (356)
135 smart00143 PI3K_p85B PI3-kinas 38.3 35 0.00075 22.1 2.4 20 21-40 3-22 (78)
136 cd01777 SNX27_RA Ubiquitin dom 37.6 97 0.0021 20.5 4.5 34 6-40 1-34 (87)
137 PF11816 DUF3337: Domain of un 36.3 48 0.0011 26.5 3.5 52 23-74 253-312 (331)
138 KOG4261 Talin [Cytoskeleton] 35.5 59 0.0013 29.9 4.1 68 6-79 3-76 (1003)
139 cd01768 RA RA (Ras-associating 35.4 1.1E+02 0.0024 18.9 6.5 33 9-41 2-36 (87)
140 KOG2507 Ubiquitin regulatory p 35.0 89 0.0019 26.7 4.9 68 5-78 313-383 (506)
141 PTZ00380 microtubule-associate 34.0 55 0.0012 22.9 3.1 44 23-73 46-89 (121)
142 PF00894 Luteo_coat: Luteoviru 33.5 1.2E+02 0.0025 21.8 4.7 55 6-62 45-117 (138)
143 PRK08053 sulfur carrier protei 33.1 1.1E+02 0.0024 18.3 4.7 51 14-79 5-55 (66)
144 PRK05659 sulfur carrier protei 32.6 1.1E+02 0.0024 18.1 4.7 51 14-79 5-55 (66)
145 PRK06083 sulfur carrier protei 31.8 1.4E+02 0.0031 19.2 7.4 62 2-79 12-73 (84)
146 COG5222 Uncharacterized conser 31.2 1.4E+02 0.003 24.6 5.3 47 9-62 5-54 (427)
147 KOG2561 Adaptor protein NUB1, 30.7 42 0.00091 28.9 2.4 49 23-78 55-103 (568)
148 PF14941 OAF: Transcriptional 29.3 1.7E+02 0.0038 22.8 5.3 57 3-66 24-80 (240)
149 PF02196 RBD: Raf-like Ras-bin 29.3 1.4E+02 0.0031 18.4 7.4 56 8-71 2-59 (71)
150 cd06404 PB1_aPKC PB1 domain is 27.0 1.1E+02 0.0024 20.0 3.4 33 10-42 2-34 (83)
151 PRK05863 sulfur carrier protei 26.9 1.5E+02 0.0032 17.8 4.9 50 14-79 5-54 (65)
152 smart00314 RA Ras association 26.5 1.7E+02 0.0037 18.3 4.3 31 9-40 5-38 (90)
153 PRK04966 hypothetical protein; 26.1 18 0.0004 23.1 -0.4 30 11-40 20-49 (72)
154 PF14847 Ras_bdg_2: Ras-bindin 26.0 1.5E+02 0.0031 20.1 4.0 34 8-42 2-35 (105)
155 KOG3309 Ferredoxin [Energy pro 26.0 1.2E+02 0.0026 22.3 3.7 29 5-34 42-70 (159)
156 PF02991 Atg8: Autophagy prote 25.8 1.7E+02 0.0036 19.7 4.3 47 21-73 36-82 (104)
157 KOG2660 Locus-specific chromos 24.3 1.1E+02 0.0024 25.1 3.6 47 22-74 168-215 (331)
158 PF11816 DUF3337: Domain of un 23.8 74 0.0016 25.5 2.6 29 23-62 301-329 (331)
159 PF12436 USP7_ICP0_bdg: ICP0-b 22.9 2.5E+02 0.0054 21.5 5.3 47 5-58 175-223 (249)
160 cd01668 TGS_RelA_SpoT TGS_RelA 22.6 1.6E+02 0.0034 16.5 4.9 41 13-65 5-45 (60)
161 PF12039 DUF3525: Protein of u 22.5 96 0.0021 25.3 3.0 31 54-90 26-65 (453)
162 PF01440 Gemini_AL2: Geminivir 22.3 40 0.00086 24.0 0.7 16 102-117 26-41 (134)
163 cd06398 PB1_Joka2 The PB1 doma 21.3 2.5E+02 0.0054 18.3 5.3 25 18-42 10-39 (91)
164 cd01616 TGS The TGS domain, na 21.2 1.5E+02 0.0033 15.8 5.3 27 11-40 3-29 (60)
165 PF12219 End_tail_spike: Catal 20.8 36 0.00077 24.7 0.2 12 51-62 82-93 (160)
166 PRK07440 hypothetical protein; 20.4 2.2E+02 0.0048 17.4 5.0 47 21-79 13-59 (70)
167 TIGR00824 EIIA-man PTS system, 20.0 1E+02 0.0022 20.7 2.3 25 16-40 27-51 (116)
No 1
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=100.00 E-value=2.7e-36 Score=207.36 Aligned_cols=112 Identities=66% Similarity=1.168 Sum_probs=108.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033467 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
+|.|+||||+.+|+||+++.|++++||++||++|+++||++||.+|.++++|||||+||+|+|++||++|+++.|++++.
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eEEEEEEEcCCccccccccccCCCCCCCceEE
Q 033467 84 VIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSC 115 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~k~~k~~~~k~~~~~c~c 115 (118)
.+|||||+|++.+.++.+|++..+|+..+|+|
T Consensus 82 ~~TmHvvlr~~~~~~~~~k~~~~~~~~~~c~c 113 (113)
T cd01814 82 VITMHVVVQPPLADKKTEKKVDKAPKAVICTC 113 (113)
T ss_pred ceEEEEEecCCCCCccccccccCCcccCCCCC
Confidence 99999999999999999999999999999999
No 2
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=100.00 E-value=6.9e-33 Score=191.18 Aligned_cols=111 Identities=46% Similarity=0.921 Sum_probs=86.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+.|+|||++.+|+|+.++.|++++||++||+.|.++||.+|+..|.+++++||||+||+|+|+.||++|+++.|+.+..+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 57999999999999999999999999999999999999999888899999999999999999999999999999887778
Q ss_pred EEEEEEEcCCccccccccccCCCCCCCceEEe
Q 033467 85 IIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCS 116 (118)
Q Consensus 85 ~t~hlv~~~~~~~~k~~k~~~~k~~~~~c~c~ 116 (118)
++||||++++.+.++.+++ ..++++..|+|+
T Consensus 81 ~vmHlvvrp~~~~~~~~~~-~~~~k~~~C~C~ 111 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNEEKK-RKKPKQSGCSCC 111 (111)
T ss_dssp EEEEEEE-SSSSSSSSSS------STT-----
T ss_pred EEEEEEecCCCCCcccccc-ccCcCCCCCCCC
Confidence 9999999999888776555 667899999996
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.79 E-value=4.6e-19 Score=113.21 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=64.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|.+|+.+|+.+ .+++++++||++||++|++. +| +++|||+|+||.|+|+.+|++|+|.+| .
T Consensus 2 ~i~vk~~~G~~~-~l~v~~~~tV~~lK~~i~~~~gi~---------~~~q~L~~~G~~L~d~~~L~~~~i~~~------~ 65 (74)
T cd01807 2 FLTVKLLQGREC-SLQVSEKESVSTLKKLVSEHLNVP---------EEQQRLLFKGKALADDKRLSDYSIGPN------A 65 (74)
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------HHHeEEEECCEECCCCCCHHHCCCCCC------C
Confidence 578888999654 79999999999999999988 55 999999999999999999999999999 7
Q ss_pred EEEEEEcCC
Q 033467 86 IMHVVVQPS 94 (118)
Q Consensus 86 t~hlv~~~~ 94 (118)
++|++++++
T Consensus 66 ~l~l~~~~~ 74 (74)
T cd01807 66 KLNLVVRPP 74 (74)
T ss_pred EEEEEEcCC
Confidence 899998864
No 4
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.79 E-value=3.8e-19 Score=116.09 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=61.9
Q ss_pred EEEEEEeCCCCee-eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccC--CCCCCCCCc
Q 033467 7 IDIKFRLYDGSDI-GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK--IPYGEVPGG 83 (118)
Q Consensus 7 i~l~~~~~~g~~~-~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~--i~~g~~~~~ 83 (118)
++|.+|..+|... +.+++++++||++||++|++.+|. .+ ++++|||||+||+|+|+.||++|. +.+|
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~---~~--~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~----- 71 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPS---KP--LEQDQRLIYSGKLLPDHLKLRDVLRKQDEY----- 71 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCC---CC--ChhHeEEEEcCeeccchhhHHHHhhcccCC-----
Confidence 7899999999542 245558999999999999998651 12 389999999999999999999996 8877
Q ss_pred eEEEEEEE
Q 033467 84 VIIMHVVV 91 (118)
Q Consensus 84 ~~t~hlv~ 91 (118)
.|||||.
T Consensus 72 -~tiHLV~ 78 (79)
T cd01790 72 -HMVHLVC 78 (79)
T ss_pred -ceEEEEe
Confidence 7899985
No 5
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.78 E-value=7.3e-19 Score=111.99 Aligned_cols=67 Identities=28% Similarity=0.413 Sum_probs=61.2
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 033467 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
+++++.+|+.+ ++++++++||++||++|++. +| +++|||||+|+.|+|+.+|++|+|..| .+
T Consensus 1 ~~vk~~~G~~~-~l~v~~~~TV~~lK~~I~~~~gi~---------~~~q~Li~~G~~L~D~~~l~~~~i~~~------~t 64 (70)
T cd01794 1 LKVRLSTGKDV-KLSVSSKDTVGQLKKQLQAAEGVD---------PCCQRWFFSGKLLTDKTRLQETKIQKD------YV 64 (70)
T ss_pred CeEEcCCCCEE-EEEECCcChHHHHHHHHHHHhCCC---------HHHeEEEECCeECCCCCCHHHcCCCCC------CE
Confidence 57899999665 79999999999999999987 55 999999999999999999999999987 78
Q ss_pred EEEEE
Q 033467 87 MHVVV 91 (118)
Q Consensus 87 ~hlv~ 91 (118)
+||++
T Consensus 65 v~~~~ 69 (70)
T cd01794 65 VQVIV 69 (70)
T ss_pred EEEEe
Confidence 99986
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.75 E-value=4e-18 Score=108.93 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=60.2
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEE
Q 033467 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~h 88 (118)
|.+|. + ....+++++++||++||++|++. +.+| +++|||||+||.|+|+.||++|+|.++ +|+|
T Consensus 3 i~vk~--~-~~~~l~v~~~~tV~~lK~~i~~~-----~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~------~tl~ 66 (74)
T cd01793 3 LFVRA--Q-NTHTLEVTGQETVSDIKAHVAGL-----EGID--VEDQVLLLAGVPLEDDATLGQCGVEEL------CTLE 66 (74)
T ss_pred EEEEC--C-CEEEEEECCcCcHHHHHHHHHhh-----hCCC--HHHEEEEECCeECCCCCCHHHcCCCCC------CEEE
Confidence 44554 3 34579999999999999999988 1233 999999999999999999999999998 7899
Q ss_pred EEEcCCc
Q 033467 89 VVVQPSL 95 (118)
Q Consensus 89 lv~~~~~ 95 (118)
++++..+
T Consensus 67 l~~~l~G 73 (74)
T cd01793 67 VAGRLLG 73 (74)
T ss_pred EEEecCC
Confidence 9998765
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.75 E-value=5.1e-18 Score=110.16 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=64.5
Q ss_pred EEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033467 8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~-v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
.|.|++.+|..+..++ +++++||.+||++|++. +| +++|||||+||+|+|+.+|++|+|.+|
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~---------~~~QrLi~~Gk~L~D~~tL~~y~i~~~------ 66 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE---------PECQRLFYRGKQMEDGHTLFDYNVGLN------ 66 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC---------HHHeEEEeCCEECCCCCCHHHcCCCCC------
Confidence 5788999996644675 89999999999999988 44 999999999999999999999999999
Q ss_pred EEEEEEEcCCc
Q 033467 85 IIMHVVVQPSL 95 (118)
Q Consensus 85 ~t~hlv~~~~~ 95 (118)
.++|+++++.+
T Consensus 67 ~~i~l~~~~~~ 77 (78)
T cd01797 67 DIIQLLVRQDP 77 (78)
T ss_pred CEEEEEEecCC
Confidence 78999988754
No 8
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.74 E-value=9.3e-18 Score=107.81 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=62.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
+.|.|+...|+.+ .+++++++||++||++|++.+. .| +++|||||+|++|+|+.||++|||.+| ++
T Consensus 2 ~~i~vkt~~Gk~~-~~~v~~~~TV~~LK~~I~~~~~-----~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~------st 67 (73)
T cd01791 2 IEVVCNDRLGKKV-RVKCNPDDTIGDLKKLIAAQTG-----TR--PEKIVLKKWYTIFKDHISLGDYEIHDG------MN 67 (73)
T ss_pred EEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHHhC-----CC--hHHEEEEeCCcCCCCCCCHHHcCCCCC------CE
Confidence 6788999999665 6899999999999999998832 22 999999999999999999999999999 78
Q ss_pred EEEEE
Q 033467 87 MHVVV 91 (118)
Q Consensus 87 ~hlv~ 91 (118)
+|+..
T Consensus 68 v~l~~ 72 (73)
T cd01791 68 LELYY 72 (73)
T ss_pred EEEEe
Confidence 99853
No 9
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.74 E-value=8.8e-18 Score=106.11 Aligned_cols=68 Identities=24% Similarity=0.458 Sum_probs=61.2
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 033467 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|.|++.+|..+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+| ++
T Consensus 1 i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gi~---------~~~q~Li~~G~~L~d~~~l~~~~i~~~------st 64 (70)
T cd01798 1 VYVRTNTGHTF-PVEVDPDTDIKQLKEVVAKRQGVP---------PDQLRVIFAGKELRNTTTIQECDLGQQ------SI 64 (70)
T ss_pred CEEEcCCCCEE-EEEECCCChHHHHHHHHHHHHCCC---------HHHeEEEECCeECCCCCcHHHcCCCCC------CE
Confidence 35788899654 79999999999999999998 44 999999999999999999999999999 78
Q ss_pred EEEEEc
Q 033467 87 MHVVVQ 92 (118)
Q Consensus 87 ~hlv~~ 92 (118)
+|++.|
T Consensus 65 l~l~~~ 70 (70)
T cd01798 65 LHAVRR 70 (70)
T ss_pred EEEEeC
Confidence 999865
No 10
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.73 E-value=1.5e-17 Score=113.28 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=67.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+...|.|++.+|+.+ .+++++++||++||++|++.. ++| +++|||||+|+.|+|+.+|++|+|.+|
T Consensus 26 ~~M~I~Vk~l~G~~~-~leV~~~~TV~~lK~kI~~~~-----gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~------ 91 (103)
T cd01802 26 DTMELFIETLTGTCF-ELRVSPFETVISVKAKIQRLE-----GIP--VAQQHLIWNNMELEDEYCLNDYNISEG------ 91 (103)
T ss_pred CCEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHHh-----CCC--hHHEEEEECCEECCCCCcHHHcCCCCC------
Confidence 457888999999655 799999999999999999882 122 999999999999999999999999999
Q ss_pred EEEEEEEcCCc
Q 033467 85 IIMHVVVQPSL 95 (118)
Q Consensus 85 ~t~hlv~~~~~ 95 (118)
.++|++++..+
T Consensus 92 stL~l~~~l~G 102 (103)
T cd01802 92 CTLKLVLAMRG 102 (103)
T ss_pred CEEEEEEecCC
Confidence 78999988654
No 11
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.73 E-value=1.5e-17 Score=106.29 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=62.8
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 033467 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|.||+.+|+. ..+++++++||++||++|++. +| +++|+|+|+|+.|+|+.+|++|+|+++ .+
T Consensus 1 i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~~gi~---------~~~q~L~~~G~~L~D~~tL~~~~i~~~------~t 64 (74)
T cd01810 1 ILVRNDKGRS-SIYEVQLTQTVATLKQQVSQRERVQ---------ADQFWLSFEGRPMEDEHPLGEYGLKPG------CT 64 (74)
T ss_pred CEEECCCCCE-EEEEECCcChHHHHHHHHHHHhCCC---------HHHeEEEECCEECCCCCCHHHcCCCCC------CE
Confidence 4578899955 479999999999999999987 44 999999999999999999999999998 67
Q ss_pred EEEEEcCCc
Q 033467 87 MHVVVQPSL 95 (118)
Q Consensus 87 ~hlv~~~~~ 95 (118)
+|++++..+
T Consensus 65 l~l~~~l~g 73 (74)
T cd01810 65 VFMNLRLRG 73 (74)
T ss_pred EEEEEEccC
Confidence 999887654
No 12
>PTZ00044 ubiquitin; Provisional
Probab=99.72 E-value=2.7e-17 Score=104.91 Aligned_cols=72 Identities=25% Similarity=0.399 Sum_probs=64.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|.||+.+|..+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|++.+| .
T Consensus 2 ~i~vk~~~G~~~-~l~v~~~~tv~~lK~~i~~~~gi~---------~~~q~L~~~g~~L~d~~~l~~~~i~~~------~ 65 (76)
T PTZ00044 2 QILIKTLTGKKQ-SFNFEPDNTVQQVKMALQEKEGID---------VKQIRLIYSGKQMSDDLKLSDYKVVPG------S 65 (76)
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------HHHeEEEECCEEccCCCcHHHcCCCCC------C
Confidence 577889999654 79999999999999999998 45 999999999999999999999999998 7
Q ss_pred EEEEEEcCCc
Q 033467 86 IMHVVVQPSL 95 (118)
Q Consensus 86 t~hlv~~~~~ 95 (118)
++|++++..+
T Consensus 66 ~i~l~~~~~g 75 (76)
T PTZ00044 66 TIHMVLQLRG 75 (76)
T ss_pred EEEEEEEccC
Confidence 8999988654
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.70 E-value=7.4e-17 Score=102.29 Aligned_cols=72 Identities=26% Similarity=0.435 Sum_probs=64.6
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|++.+| .
T Consensus 2 ~i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~g~~---------~~~qrL~~~g~~L~d~~tl~~~~i~~g------~ 65 (76)
T cd01806 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDDKTAADYKLEGG------S 65 (76)
T ss_pred EEEEEeCCCCEE-EEEECCCCCHHHHHHHHhHhhCCC---------hhhEEEEECCeEccCCCCHHHcCCCCC------C
Confidence 578899999665 79999999999999999988 44 999999999999999999999999999 6
Q ss_pred EEEEEEcCCc
Q 033467 86 IMHVVVQPSL 95 (118)
Q Consensus 86 t~hlv~~~~~ 95 (118)
++|++++..+
T Consensus 66 ~i~l~~~~~g 75 (76)
T cd01806 66 VLHLVLALRG 75 (76)
T ss_pred EEEEEEEccC
Confidence 8999987543
No 14
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.70 E-value=5.7e-17 Score=102.72 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=61.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
+.|.|+..+|. . .+++++++||++||++|++... +| +++|||+|+||.|+|+.+|++|++.+| ++
T Consensus 1 ~~i~vk~~~g~-~-~l~v~~~~TV~~lK~~I~~~~~-----i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~------st 65 (71)
T cd01808 1 IKVTVKTPKDK-E-EIEIAEDASVKDFKEAVSKKFK-----AN--QEQLVLIFAGKILKDTDTLTQHNIKDG------LT 65 (71)
T ss_pred CEEEEEcCCCC-E-EEEECCCChHHHHHHHHHHHhC-----CC--HHHEEEEECCeEcCCCCcHHHcCCCCC------CE
Confidence 35778888884 4 7999999999999999998832 22 999999999999999999999999998 78
Q ss_pred EEEEEc
Q 033467 87 MHVVVQ 92 (118)
Q Consensus 87 ~hlv~~ 92 (118)
+|++++
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 999875
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.70 E-value=8.5e-17 Score=104.14 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=63.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
..|.++...|+. .++++++++||++||++|+++.. .| +++|||+|+|+.|+|+ +|++|||.+| .+
T Consensus 2 m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~~~~-----~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~------~~ 66 (78)
T cd01804 2 MNLNIHSTTGTR-FDLSVPPDETVEGLKKRISQRLK-----VP--KERLALLHRETRLSSG-KLQDLGLGDG------SK 66 (78)
T ss_pred eEEEEEECCCCE-EEEEECCcCHHHHHHHHHHHHhC-----CC--hHHEEEEECCcCCCCC-cHHHcCCCCC------CE
Confidence 578889999966 47999999999999999998831 22 9999999999999999 9999999999 67
Q ss_pred EEEEEcCC
Q 033467 87 MHVVVQPS 94 (118)
Q Consensus 87 ~hlv~~~~ 94 (118)
+|++....
T Consensus 67 i~l~~~~~ 74 (78)
T cd01804 67 LTLVPTVE 74 (78)
T ss_pred EEEEeecc
Confidence 99987654
No 16
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.70 E-value=1.7e-16 Score=99.27 Aligned_cols=68 Identities=29% Similarity=0.478 Sum_probs=59.9
Q ss_pred EeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEE
Q 033467 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (118)
Q Consensus 12 ~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
|+.+|+. +.+++++++||.+||++|++.+. +| ++.|+|+|+|+.|+|+.+|++|+|.+| .+||+++
T Consensus 1 k~~~g~~-~~~~v~~~~tV~~lK~~i~~~~~-----~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~------~~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKT-FTLEVDPDDTVADLKQKIAEETG-----IP--PEQQRLIYNGKELDDDKTLSDYGIKDG------STIHLVI 66 (69)
T ss_dssp EETTSEE-EEEEEETTSBHHHHHHHHHHHHT-----ST--GGGEEEEETTEEESTTSBTGGGTTSTT------EEEEEEE
T ss_pred CCCCCcE-EEEEECCCCCHHHhhhhcccccc-----cc--cccceeeeeeecccCcCcHHHcCCCCC------CEEEEEE
Confidence 4678854 58999999999999999999932 22 999999999999999999999999999 7899987
Q ss_pred cC
Q 033467 92 QP 93 (118)
Q Consensus 92 ~~ 93 (118)
++
T Consensus 67 k~ 68 (69)
T PF00240_consen 67 KP 68 (69)
T ss_dssp SS
T ss_pred ec
Confidence 75
No 17
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.69 E-value=1e-16 Score=103.11 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=60.5
Q ss_pred CCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEEc
Q 033467 15 DGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (118)
Q Consensus 15 ~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
+| .++++++++++||++||++|++. +| +++|+|+|+|+.|+|+.+|++|+|.+| .++|++++
T Consensus 6 ~g-~~~~l~v~~~~TV~~lK~~i~~~~gip---------~~~q~L~~~G~~L~d~~tL~~~~i~~g------~~l~v~~~ 69 (76)
T cd01800 6 NG-QMLNFTLQLSDPVSVLKVKIHEETGMP---------AGKQKLQYEGIFIKDSNSLAYYNLANG------TIIHLQLK 69 (76)
T ss_pred CC-eEEEEEECCCCcHHHHHHHHHHHHCCC---------HHHEEEEECCEEcCCCCcHHHcCCCCC------CEEEEEEe
Confidence 56 45689999999999999999988 44 999999999999999999999999999 67999999
Q ss_pred CCcccc
Q 033467 93 PSLAKT 98 (118)
Q Consensus 93 ~~~~~~ 98 (118)
..++.+
T Consensus 70 ~~gg~~ 75 (76)
T cd01800 70 ERGGRK 75 (76)
T ss_pred cCCCcC
Confidence 877654
No 18
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.68 E-value=1.9e-16 Score=100.38 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=64.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|++.+| .
T Consensus 2 ~i~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~g~~---------~~~q~L~~~g~~L~d~~~L~~~~i~~~------~ 65 (76)
T cd01803 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (76)
T ss_pred EEEEEcCCCCEE-EEEECCcCcHHHHHHHHHHHhCCC---------HHHeEEEECCEECCCCCcHHHcCCCCC------C
Confidence 477888999665 79999999999999999998 55 999999999999999999999999998 7
Q ss_pred EEEEEEcCCc
Q 033467 86 IMHVVVQPSL 95 (118)
Q Consensus 86 t~hlv~~~~~ 95 (118)
++|++++..+
T Consensus 66 ~i~l~~~~~g 75 (76)
T cd01803 66 TLHLVLRLRG 75 (76)
T ss_pred EEEEEEEccC
Confidence 8999988654
No 19
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.68 E-value=2.1e-16 Score=99.20 Aligned_cols=72 Identities=31% Similarity=0.516 Sum_probs=62.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
+.|.++..+|.. ..+++++++||++||++|++... +| ++.|||+|+|+.|+|+.+|++|++.+| ++
T Consensus 1 i~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~~g-----i~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~ 66 (72)
T cd01809 1 IEIKVKTLDSQT-HTFTVEEEITVLDLKEKIAEEVG-----IP--VEQQRLIYSGRVLKDDETLSEYKVEDG------HT 66 (72)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHHC-----cC--HHHeEEEECCEECCCcCcHHHCCCCCC------CE
Confidence 467888899954 58999999999999999999832 22 999999999999999999999999999 78
Q ss_pred EEEEEc
Q 033467 87 MHVVVQ 92 (118)
Q Consensus 87 ~hlv~~ 92 (118)
+|++.+
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 999864
No 20
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.68 E-value=2.7e-16 Score=100.42 Aligned_cols=74 Identities=28% Similarity=0.336 Sum_probs=61.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
.|.++..+|.. +.+++++++||++||++|++... ++.++++|||+|+|+.|+|+.+|++|++++| .++
T Consensus 2 ~i~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~~~~-----i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~------~~i 69 (77)
T cd01805 2 KITFKTLKQQT-FPIEVDPDDTVAELKEKIEEEKG-----CDYPPEQQKLIYSGKILKDDTTLEEYKIDEK------DFV 69 (77)
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHhhC-----CCCChhHeEEEECCEEccCCCCHHHcCCCCC------CEE
Confidence 57788899955 47999999999999999999832 1012999999999999999999999999998 567
Q ss_pred EEEEcC
Q 033467 88 HVVVQP 93 (118)
Q Consensus 88 hlv~~~ 93 (118)
|++++.
T Consensus 70 ~~~~~~ 75 (77)
T cd01805 70 VVMVSK 75 (77)
T ss_pred EEEEec
Confidence 776543
No 21
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.67 E-value=2.1e-16 Score=102.47 Aligned_cols=73 Identities=25% Similarity=0.363 Sum_probs=64.2
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE--EecCeecCCCCcccccCCCCCCCCCce
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrL--I~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+.|.++..+|+.+ .+++++++||++||++|++... +| +++||| +|.|++|+|+.+|++||+.+|
T Consensus 3 ~~i~Vk~~~G~~~-~~~v~~~~TV~~lK~~I~~~~~-----i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~g------ 68 (80)
T cd01792 3 WDLKVKMLGGNEF-LVSLRDSMTVSELKQQIAQKIG-----VP--AFQQRLAHLDSREVLQDGVPLVSQGLGPG------ 68 (80)
T ss_pred eEEEEEeCCCCEE-EEEcCCCCcHHHHHHHHHHHhC-----CC--HHHEEEEeccCCCCCCCCCCHHHcCCCCC------
Confidence 6889999999665 6899999999999999998832 22 999999 999999999999999999999
Q ss_pred EEEEEEEcC
Q 033467 85 IIMHVVVQP 93 (118)
Q Consensus 85 ~t~hlv~~~ 93 (118)
.++|++++.
T Consensus 69 s~l~l~~~~ 77 (80)
T cd01792 69 STVLLVVQN 77 (80)
T ss_pred CEEEEEEEc
Confidence 678998774
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.65 E-value=3.4e-16 Score=99.58 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=57.1
Q ss_pred EEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CcccccCCCCCCCCCceEE
Q 033467 9 IKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPGGVII 86 (118)
Q Consensus 9 l~~~~~-~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~~~~~~t 86 (118)
|+|++. +|.. +.+++++++||++||++|++.. ++| +++|||||+||.|+|+ .+|++|+|.+| .+
T Consensus 1 l~v~~~~~g~~-~~l~v~~~~TV~~lK~~I~~~~-----gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~------~~ 66 (71)
T cd01796 1 ITVYTARSETT-FSLDVDPDLELENFKALCEAES-----GIP--ASQQQLIYNGRELVDNKRLLALYGVKDG------DL 66 (71)
T ss_pred CEEEECCCCCE-EEEEECCcCCHHHHHHHHHHHh-----CCC--HHHeEEEECCeEccCCcccHHHcCCCCC------CE
Confidence 467888 7754 5899999999999999999881 223 9999999999999887 78999999999 56
Q ss_pred EEE
Q 033467 87 MHV 89 (118)
Q Consensus 87 ~hl 89 (118)
+||
T Consensus 67 l~l 69 (71)
T cd01796 67 VVL 69 (71)
T ss_pred EEE
Confidence 776
No 23
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.61 E-value=7.9e-16 Score=99.50 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=47.7
Q ss_pred CcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEE
Q 033467 26 SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (118)
Q Consensus 26 ~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
.++||.+||++|+++++ +.+ +++++|||||+||+|+|+.||++|+|.+| .++|+|.
T Consensus 19 ~~~TV~~LK~kI~~~~~---egi-~~~dqQrLIy~GKiL~D~~TL~dygI~~g------stlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLP---DSL-PDPELIDLIHCGRKLKDDQTLDFYGIQSG------STIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhc---cCC-CChHHeEEEeCCcCCCCCCcHHHcCCCCC------CEEEEEe
Confidence 46799999999999853 111 12899999999999999999999999999 7899985
No 24
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=8e-16 Score=110.92 Aligned_cols=87 Identities=26% Similarity=0.415 Sum_probs=73.1
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 033467 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (118)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
++...|..+ .+++++++||..+|++|++. |.+| +++|||||+|+.|+|..+|++|+|+.. .|+||+
T Consensus 5 Vk~l~~kti-~~eve~~~ti~~~Kakiq~~-----egIp--~dqqrlifag~qLedgrtlSDY~Iqke------stl~l~ 70 (156)
T KOG0004|consen 5 VKTLTGKTI-TLEVEANDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLV 70 (156)
T ss_pred hhhccccce-eeeecccccHHHHHHhhhcc-----cCCC--chhhhhhhhhcccccCCcccccccccc------ceEEEE
Confidence 344566444 68999999999999999976 4455 999999999999999999999999976 899999
Q ss_pred EcCCccccccccccCCCCCCC
Q 033467 91 VQPSLAKTKTEKKIDDSPRKI 111 (118)
Q Consensus 91 ~~~~~~~~k~~k~~~~k~~~~ 111 (118)
++..++.++++++.++-|++.
T Consensus 71 l~l~Gg~kkrkkk~~~~pk~~ 91 (156)
T KOG0004|consen 71 LRLRGGAKKRKKKSYTTPKKI 91 (156)
T ss_pred EEecCCccccccccccccccc
Confidence 999999888777777766543
No 25
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.59 E-value=5.1e-15 Score=92.91 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=58.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
|.|+++.. | ...++++++++||++||++|++. +| +++|||+|.|+.|+|+.+|++|++.+|
T Consensus 1 i~i~vk~~-g-~~~~i~v~~~~tv~~lK~~i~~~~gi~---------~~~q~L~~~g~~l~d~~~L~~~~i~~g------ 63 (71)
T cd01812 1 IRVRVKHG-G-ESHDLSISSQATFGDLKKMLAPVTGVE---------PRDQKLIFKGKERDDAETLDMSGVKDG------ 63 (71)
T ss_pred CEEEEEEC-C-EEEEEEECCCCcHHHHHHHHHHhhCCC---------hHHeEEeeCCcccCccCcHHHcCCCCC------
Confidence 46777776 6 44589999999999999999988 55 999999999999999999999999999
Q ss_pred EEEEEE
Q 033467 85 IIMHVV 90 (118)
Q Consensus 85 ~t~hlv 90 (118)
.++|++
T Consensus 64 ~~l~v~ 69 (71)
T cd01812 64 SKVMLL 69 (71)
T ss_pred CEEEEe
Confidence 578876
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.5e-15 Score=94.14 Aligned_cols=69 Identities=25% Similarity=0.457 Sum_probs=61.6
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
.|+.++.+|+.+ .++++|+++|..+|++|++. +++| |.+|||||+||++.|+.|-++|++.-| +++
T Consensus 2 ~iKvktLt~KeI-eidIep~DkverIKErvEEk-----eGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~G------SVl 67 (70)
T KOG0005|consen 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGG------SVL 67 (70)
T ss_pred eeeEeeeccceE-EEeeCcchHHHHHHHHhhhh-----cCCC--chhhhhhhccccccccccHHHhhhccc------eeE
Confidence 467888999887 79999999999999999998 3344 999999999999999999999999988 779
Q ss_pred EEE
Q 033467 88 HVV 90 (118)
Q Consensus 88 hlv 90 (118)
|+|
T Consensus 68 Hlv 70 (70)
T KOG0005|consen 68 HLV 70 (70)
T ss_pred eeC
Confidence 985
No 27
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.57 E-value=4.1e-15 Score=123.04 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=66.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033467 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.+.|++++.++ .+.|.|..+.||.+||+.|+..+- .++++|+|||+||+|+|++||.+|||.+| .
T Consensus 15 ~irV~Vkt~~d--k~~~~V~~~ssV~qlKE~I~~~f~-------a~~dqlvLIfaGrILKD~dTL~~~gI~Dg------~ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKD--KYEVNVASDSSVLQLKELIAQRFG-------APPDQLVLIYAGRILKDDDTLKQYGIQDG------H 79 (493)
T ss_pred eeEEEEecCCc--ceeEecccchHHHHHHHHHHHhcC-------CChhHeeeeecCccccChhhHHHcCCCCC------c
Confidence 47788887776 357999999999999999999954 33999999999999999999999999999 8
Q ss_pred EEEEEEcCCcc
Q 033467 86 IMHVVVQPSLA 96 (118)
Q Consensus 86 t~hlv~~~~~~ 96 (118)
|||||++....
T Consensus 80 TvHLVik~~~~ 90 (493)
T KOG0010|consen 80 TVHLVIKSQPR 90 (493)
T ss_pred EEEEEeccCCC
Confidence 99999886543
No 28
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.53 E-value=1.1e-13 Score=91.21 Aligned_cols=76 Identities=16% Similarity=0.325 Sum_probs=68.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033467 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
...|.|+++..+|..+ .+++.+++++..||++++++ +| +++|||+|.|+.|+|+.|+++|++.+|
T Consensus 9 ~~~i~I~v~~~~g~~~-~~~v~~~~~l~~l~~~y~~~~gi~---------~~~~rf~f~G~~L~~~~T~~~l~m~d~--- 75 (87)
T cd01763 9 SEHINLKVKGQDGNEV-FFKIKRSTPLKKLMEAYCQRQGLS---------MNSVRFLFDGQRIRDNQTPDDLGMEDG--- 75 (87)
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCCHHHHHHHHHHHHhCCC---------ccceEEEECCeECCCCCCHHHcCCCCC---
Confidence 5789999999999665 69999999999999999998 44 899999999999999999999999999
Q ss_pred CceEEEEEEEcCCc
Q 033467 82 GGVIIMHVVVQPSL 95 (118)
Q Consensus 82 ~~~~t~hlv~~~~~ 95 (118)
.++|++++..+
T Consensus 76 ---d~I~v~l~l~G 86 (87)
T cd01763 76 ---DEIEVMLEQTG 86 (87)
T ss_pred ---CEEEEEEeccc
Confidence 57999887654
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=1.4e-13 Score=112.05 Aligned_cols=67 Identities=33% Similarity=0.429 Sum_probs=57.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.|.||+.+|+. +.+++++++||.+||++|++... .+.+| +++|||||+||+|+|+.+|++|+|.+|+
T Consensus 2 kItVKtl~g~~-~~IeV~~~~TV~dLK~kI~~~~g--~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~ 68 (378)
T TIGR00601 2 TLTFKTLQQQK-FKIDMEPDETVKELKEKIEAEQG--KDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKD 68 (378)
T ss_pred EEEEEeCCCCE-EEEEeCCcChHHHHHHHHHHhhC--CCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCC
Confidence 58889999965 47999999999999999998721 11133 9999999999999999999999999985
No 30
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.49 E-value=8.3e-14 Score=89.48 Aligned_cols=65 Identities=22% Similarity=0.152 Sum_probs=54.4
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe---cCeecCCCCcccccCCCCCCCCCc
Q 033467 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS---SGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~---~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
|.++. +| ..+++++++++||++||++|++. +| +++||||| .|+.|+|+.+|++|+|.+|
T Consensus 3 i~vk~-~g-~~~~v~v~~~~Tv~~lK~~i~~~tgvp---------~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g----- 66 (74)
T cd01813 3 VIVKW-GG-QEYSVTTLSEDTVLDLKQFIKTLTGVL---------PERQKLLGLKVKGKPAEDDVKISALKLKPN----- 66 (74)
T ss_pred EEEEE-CC-EEEEEEECCCCCHHHHHHHHHHHHCCC---------HHHEEEEeecccCCcCCCCcCHHHcCCCCC-----
Confidence 44444 44 44689999999999999999998 55 99999997 9999999999999999998
Q ss_pred eEEEEEE
Q 033467 84 VIIMHVV 90 (118)
Q Consensus 84 ~~t~hlv 90 (118)
..++++
T Consensus 67 -~~i~lm 72 (74)
T cd01813 67 -TKIMMM 72 (74)
T ss_pred -CEEEEE
Confidence 456664
No 31
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.44 E-value=3.6e-13 Score=81.98 Aligned_cols=62 Identities=27% Similarity=0.465 Sum_probs=53.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCC
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (118)
.|+++..+ .. ..+++++++||++||++|++.+. .| +++|||+|+|+.|+|+.+|++|++.+|
T Consensus 2 ~i~vk~~~-~~-~~~~v~~~~tv~~lk~~i~~~~~-----~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~ 63 (64)
T smart00213 2 ELTVKTLD-GT-ITLEVKPSDTVSELKEKIAELTG-----IP--VEQQRLIYKGKVLEDDRTLADYNIQDG 63 (64)
T ss_pred EEEEEECC-ce-EEEEECCCCcHHHHHHHHHHHHC-----CC--HHHEEEEECCEECCCCCCHHHcCCcCC
Confidence 57788887 33 57999999999999999998832 22 899999999999999999999999877
No 32
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.8e-14 Score=97.76 Aligned_cols=71 Identities=24% Similarity=0.396 Sum_probs=60.7
Q ss_pred EeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEE
Q 033467 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (118)
Q Consensus 12 ~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
+...|+.+ .++++|++||..||++|... +++| +++|+|||+||+|+|..||++|++..- .|+|++.
T Consensus 6 ~~~~GKT~-~le~EpS~ti~~vKA~i~~~-----~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~------~Tl~~~~ 71 (128)
T KOG0003|consen 6 KTLTGKTI-TLEVEPSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKE------STLHLVL 71 (128)
T ss_pred EEeeCceE-EEEecccchHHHHHHHhccc-----cCCC--HHHHHHHhcccccccCCcccccCccch------hhhhhhH
Confidence 34567565 69999999999999999877 3343 999999999999999999999999866 7899998
Q ss_pred cCCcc
Q 033467 92 QPSLA 96 (118)
Q Consensus 92 ~~~~~ 96 (118)
+..++
T Consensus 72 rL~GG 76 (128)
T KOG0003|consen 72 RLRGG 76 (128)
T ss_pred HHhcC
Confidence 87766
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.38 E-value=1.9e-12 Score=83.44 Aligned_cols=68 Identities=18% Similarity=0.121 Sum_probs=53.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeec-CCCCcccccCCC-CCCCCCceE
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQCKIP-YGEVPGGVI 85 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L-~D~~tL~~~~i~-~g~~~~~~~ 85 (118)
+|.=+...|..+ .+++++++||++||++|++. +++| +++||| |.|+.| +|+.+|++|++. +| .
T Consensus 4 ~~~~~~~~~~t~-~l~v~~~~TV~~lK~kI~~~-----~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g------~ 68 (75)
T cd01799 4 SVEDAQSHTVTI-WLTVRPDMTVAQLKDKVFLD-----YGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNG------D 68 (75)
T ss_pred EEeccccCCCeE-EEEECCCCcHHHHHHHHHHH-----HCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCC------C
Confidence 333344556444 79999999999999999988 1233 999999 999998 477999999998 66 5
Q ss_pred EEEEE
Q 033467 86 IMHVV 90 (118)
Q Consensus 86 t~hlv 90 (118)
++||-
T Consensus 69 ~~~l~ 73 (75)
T cd01799 69 SAFLY 73 (75)
T ss_pred EEEEE
Confidence 67774
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.31 E-value=9.2e-12 Score=76.63 Aligned_cols=67 Identities=30% Similarity=0.444 Sum_probs=55.7
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 033467 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (118)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
++..+|..+ .+.+++++||.+||++|+..+. . +++.|+|+|.|+.|+|+.+|++|++.+| .++|+.
T Consensus 2 v~~~~~~~~-~~~~~~~~ti~~lK~~i~~~~~-----~--~~~~~~l~~~g~~l~d~~~l~~~~v~~~------~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTF-ELEVSPDDTVAELKAKIAAKEG-----V--PPEQQRLIYAGKILKDDKTLSDYGIQDG------STLHLV 67 (69)
T ss_pred eEccCCCEE-EEEECCCChHHHHHHHHHHHHC-----c--ChHHEEEEECCcCCCCcCCHHHCCCCCC------CEEEEE
Confidence 344567555 6899999999999999999843 2 2999999999999999999999999988 567765
Q ss_pred E
Q 033467 91 V 91 (118)
Q Consensus 91 ~ 91 (118)
.
T Consensus 68 ~ 68 (69)
T cd01769 68 L 68 (69)
T ss_pred E
Confidence 3
No 35
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.28 E-value=7.6e-12 Score=99.60 Aligned_cols=73 Identities=25% Similarity=0.380 Sum_probs=62.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
.|+||+..|..+ ++++.|+.||.+||.+|+..-- .+ .| ++.|+|||+||+|.|+.|+.+|++.+++| +++
T Consensus 2 ~lt~KtL~q~~F-~iev~Pe~tV~evK~kIet~~g--~d-yP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~f----iVv 71 (340)
T KOG0011|consen 2 KLTVKTLKQQTF-TIEVKPEDTVVEVKKKIETEKG--PD-YP--AEQQKLIYSGKILKDETTVGEYKVKEKKF----IVV 71 (340)
T ss_pred eeEeeeccCcee-EeecCcchhHHHHHHHHHhccC--CC-Cc--hhhheeeecceeccCCcchhhhccccCce----EEE
Confidence 689999999665 8999999999999999999822 12 33 99999999999999999999999999976 445
Q ss_pred EEE
Q 033467 88 HVV 90 (118)
Q Consensus 88 hlv 90 (118)
.|.
T Consensus 72 Mls 74 (340)
T KOG0011|consen 72 MLS 74 (340)
T ss_pred EEe
Confidence 443
No 36
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.23 E-value=2.8e-11 Score=82.04 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=56.8
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeec-CCCCcccccCCCCCCCCCceEEEEE
Q 033467 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQCKIPYGEVPGGVIIMHV 89 (118)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L-~D~~tL~~~~i~~g~~~~~~~t~hl 89 (118)
-|+.-|. . .+++++++||.+||.+|.+.+. .| +.+|+|+|.|+.| +|..||++|||..| ++++|
T Consensus 10 ~r~~~~~-~-~L~V~~~~TVg~LK~lImQ~f~-----V~--P~dQkL~~dG~~L~DDsrTLssyGv~sg------Svl~L 74 (107)
T cd01795 10 HRKVRGE-K-ALLVSANQTLKELKIQIMHAFS-----VA--PFDQNLSIDGKILSDDCATLGTLGVIPE------SVILL 74 (107)
T ss_pred hccCCCC-c-eEEeCccccHHHHHHHHHHHhc-----CC--cccceeeecCceeccCCccHHhcCCCCC------CEEEE
Confidence 3445552 2 5899999999999999999943 22 9999999999999 56799999999988 77888
Q ss_pred EEcCCc
Q 033467 90 VVQPSL 95 (118)
Q Consensus 90 v~~~~~ 95 (118)
.+..+.
T Consensus 75 lideP~ 80 (107)
T cd01795 75 KADEPI 80 (107)
T ss_pred EecCCc
Confidence 876443
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.5e-11 Score=104.85 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=68.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
.+|++++.|. .+..|.|...+||.++|++|.++ |+ .+.|||||.||+|.|++++.+|+| +|
T Consensus 3 ~~v~vktld~-r~~t~~ig~q~ti~~~~d~~r~~~ni~---------s~~qr~i~~grvl~~~k~vq~~~v-dg------ 65 (1143)
T KOG4248|consen 3 PNVLVKTLDS-RTRTFIIGAQMTIKEFKDHIRASVNIP---------SEKQRLIYQGRVLQDDKKVQEYNV-DG------ 65 (1143)
T ss_pred cceeeeeccc-ceeEEEechHHHHHHHHHHHHHhcccc---------cccceeeecceeeccchhhhhccC-CC------
Confidence 3588999998 55689999999999999999999 65 999999999999999999999999 77
Q ss_pred EEEEEEEcCCcccccc
Q 033467 85 IIMHVVVQPSLAKTKT 100 (118)
Q Consensus 85 ~t~hlv~~~~~~~~k~ 100 (118)
-++|||-|++++...+
T Consensus 66 k~~hlverppp~~~~~ 81 (1143)
T KOG4248|consen 66 KVIHLVERPPPQTHLP 81 (1143)
T ss_pred eEEEeeccCCCCcccc
Confidence 6799999987775543
No 38
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.10 E-value=5e-10 Score=70.45 Aligned_cols=69 Identities=33% Similarity=0.483 Sum_probs=58.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCC-ceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAV-TEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~-~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
++|+++..+|+.+ .+.+.+++++..|.+.++++ +| + +.++|+|.|+.|+++.|++++++.+|
T Consensus 1 I~i~v~~~~~~~~-~~~v~~~~~~~~l~~~~~~~~~i~---------~~~~~~l~fdG~~L~~~~T~~~~~ied~----- 65 (72)
T PF11976_consen 1 ITIKVRSQDGKEI-KFKVKPTTTVSKLIEKYCEKKGIP---------PEESIRLIFDGKRLDPNDTPEDLGIEDG----- 65 (72)
T ss_dssp EEEEEEETTSEEE-EEEEETTSCCHHHHHHHHHHHTTT---------T-TTEEEEETTEEE-TTSCHHHHT-STT-----
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHhhCCC---------ccceEEEEECCEEcCCCCCHHHCCCCCC-----
Confidence 5788888999654 79999999999999999988 44 6 99999999999999999999999999
Q ss_pred eEEEEEEE
Q 033467 84 VIIMHVVV 91 (118)
Q Consensus 84 ~~t~hlv~ 91 (118)
.++||++
T Consensus 66 -d~Idv~I 72 (72)
T PF11976_consen 66 -DTIDVII 72 (72)
T ss_dssp -EEEEEE-
T ss_pred -CEEEEEC
Confidence 5688763
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.08 E-value=1.1e-09 Score=71.74 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE-EecCe-----ec-CCCCcccccCCCCCC
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSGK-----IL-ENNKTVGQCKIPYGE 79 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrL-I~~Gk-----~L-~D~~tL~~~~i~~g~ 79 (118)
+.|.+.........+..+++++||.+||++++...- .| ++.||| +|.|+ .| +|+++|++|++.+|
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G-----~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg- 73 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVG-----TP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDG- 73 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHC-----CC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCC-
Confidence 345554443323334559999999999999988832 22 999999 58999 56 78899999999999
Q ss_pred CCCceEEEEEEE
Q 033467 80 VPGGVIIMHVVV 91 (118)
Q Consensus 80 ~~~~~~t~hlv~ 91 (118)
.++|++-
T Consensus 74 -----~~IhVvD 80 (84)
T cd01789 74 -----CRIHVID 80 (84)
T ss_pred -----CEEEEEe
Confidence 7899874
No 40
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=99.04 E-value=1.3e-09 Score=73.56 Aligned_cols=88 Identities=23% Similarity=0.376 Sum_probs=60.2
Q ss_pred EEEEeCCC-CeeeeEEeC--CcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033467 9 IKFRLYDG-SDIGPFRYS--SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 9 l~~~~~~g-~~~~~~~v~--~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
|.+|+.++ -|+ +++|+ .++||..||+.|.+.+|.+ ++-..+||||+||+|.|...|+..-...
T Consensus 3 l~IRFs~sipDl-~L~I~~~~~~Tv~~LK~lIR~~~p~~-----~s~~rLRlI~~Gr~L~d~t~l~~~l~~~-------- 68 (97)
T PF10302_consen 3 LTIRFSDSIPDL-PLDIPSPNTTTVAWLKQLIRERLPPE-----PSRRRLRLIYAGRLLNDHTDLSSELKLP-------- 68 (97)
T ss_pred EEEEECCCCCCc-eeecCCCCcccHHHHHHHHHhhcCCC-----CccccEEeeecCcccCccchhhhhhccc--------
Confidence 44455553 343 68888 8899999999999998632 5688999999999999998877543221
Q ss_pred EEEEEEcCCccccccccccC-CCCCCCceEEee
Q 033467 86 IMHVVVQPSLAKTKTEKKID-DSPRKIVCSCSI 117 (118)
Q Consensus 86 t~hlv~~~~~~~~k~~k~~~-~k~~~~~c~c~i 117 (118)
.....+.+++... ..+.+.+-+|+|
T Consensus 69 -------~~~~~~~~gk~~~~~~~~~~yIhCsI 94 (97)
T PF10302_consen 69 -------TARSSKGKGKAPERQEAPRIYIHCSI 94 (97)
T ss_pred -------cccCccccCcCccCCCCCeEEEEEec
Confidence 1111222233322 467889999987
No 41
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.91 E-value=3.1e-09 Score=68.27 Aligned_cols=60 Identities=27% Similarity=0.361 Sum_probs=46.4
Q ss_pred eeeeEEe-CCcchHHHHHHHHHhhCCCCCccCCCCCceeEE--EecCeecCCCCcccccCCCCCCCCCceEEEEE
Q 033467 18 DIGPFRY-SSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPGGVIIMHV 89 (118)
Q Consensus 18 ~~~~~~v-~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrL--I~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hl 89 (118)
.+..+++ ++++||.+||+.|++.++ .. ++++||| ++.|+.|.|+++|+++|+.+| .++|+
T Consensus 12 ~~~~~~~~~~~aTV~dlk~~i~~~~~----~~--~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g------~~lyv 74 (77)
T cd01801 12 PIGKLKVSSGDATIADLKKLIAKSSP----QL--TVNRQSLRLEPKGKSLKDDDTLVDLGVGAG------ATLYV 74 (77)
T ss_pred ceeecccCCCCccHHHHHHHHHHHcC----CC--CcceeEEEeCCCCcccCCcccHhhcCCCCC------CEEEE
Confidence 4433444 488999999999998732 11 2888887 699999999999999999988 56665
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.82 E-value=1.3e-08 Score=81.10 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=52.8
Q ss_pred EEEEEeCCCCee--eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec---C----eecCCCCcccccCCCCC
Q 033467 8 DIKFRLYDGSDI--GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G----KILENNKTVGQCKIPYG 78 (118)
Q Consensus 8 ~l~~~~~~g~~~--~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~---G----k~L~D~~tL~~~~i~~g 78 (118)
.|.++..+|+.+ .++++++++||++||++|+++.+. .++++|||++. | +.|+|+++|+++|+.+|
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~------~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~g 75 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKK------YYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDG 75 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCC------CChhheEEEEecCCCCcCccccCCCCCHHhcCCCCC
Confidence 355667778777 579999999999999999987320 12899999983 4 48999999999999988
No 43
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.78 E-value=8.8e-08 Score=58.11 Aligned_cols=68 Identities=29% Similarity=0.516 Sum_probs=58.0
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEE
Q 033467 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (118)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~h 88 (118)
+....|+.+ .+++.+..+|..+|.+|+.. +| .++|+|.|.|+.|+|+.+|.+|+|..+ .++|
T Consensus 4 ~~~~~gk~~-~~~~~~~~~i~~~k~~i~~~~~~~---------~~~q~~~~~~~~l~d~~~l~~~~i~~~------~~~~ 67 (75)
T KOG0001|consen 4 VKTLDGKTI-TLEVSPSDTIEVVKAKIRDKEGIP---------VDQQRLIFGGKPLEDGRTLADYNIQEG------STLH 67 (75)
T ss_pred EEecCCCEE-EEEecCCCHHHHHHHHHHhhcCCC---------CeeEEEEECCEECcCCCcHHHhCCCCC------CEEE
Confidence 344677555 69999999999999999987 44 999999999999999999999999988 6788
Q ss_pred EEEcCC
Q 033467 89 VVVQPS 94 (118)
Q Consensus 89 lv~~~~ 94 (118)
++.+..
T Consensus 68 l~~~~~ 73 (75)
T KOG0001|consen 68 LVLSLR 73 (75)
T ss_pred EEEecC
Confidence 876654
No 44
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.65 E-value=2.5e-07 Score=60.54 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=52.7
Q ss_pred EEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec----Ce---ec-CCCCcccccCCCC
Q 033467 7 IDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS----GK---IL-ENNKTVGQCKIPY 77 (118)
Q Consensus 7 i~l~~~~~~g~-~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~----Gk---~L-~D~~tL~~~~i~~ 77 (118)
|.|.+...... ...+..|++++||.+||++|+..+. +| ++.|||.+. |. .| +|+.+|.+|++.+
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~G-----i~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~d 74 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTG-----IP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKD 74 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHT-----S---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-ST
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhC-----CC--cccEEEEEEecCCCccccccCCCccEeecCCCCC
Confidence 45555554432 3457899999999999999999932 22 999999776 11 23 6789999999999
Q ss_pred CCCCCceEEEEEE
Q 033467 78 GEVPGGVIIMHVV 90 (118)
Q Consensus 78 g~~~~~~~t~hlv 90 (118)
| .++|++
T Consensus 75 g------~~i~V~ 81 (87)
T PF14560_consen 75 G------MRIHVV 81 (87)
T ss_dssp T------EEEEEE
T ss_pred C------CEEEEE
Confidence 9 788876
No 45
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.63 E-value=1.5e-07 Score=65.24 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=56.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCC-CCce
Q 033467 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGV 84 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-~~~~ 84 (118)
.+.+++|=..- .+ -++..+++||.+||++|+.-+. .| +++|||+-.+.+|+|++||++||+..... +..+
T Consensus 2 dvFlmIrR~KT-Ti-F~dakes~tVlelK~~iegI~k-----~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~p 72 (119)
T cd01788 2 DVFLMIRRHKT-TI-FTDAKESTTVYELKRIVEGILK-----RP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAP 72 (119)
T ss_pred ceEEEEEecce-EE-EeecCCcccHHHHHHHHHHHhc-----CC--hhHheeecCceeecccccHHHcCccccccccCCC
Confidence 35556655443 33 4799999999999999998733 22 99999997778999999999999954322 2233
Q ss_pred EEEEEEEc
Q 033467 85 IIMHVVVQ 92 (118)
Q Consensus 85 ~t~hlv~~ 92 (118)
.++-|.+|
T Consensus 73 A~vgLa~r 80 (119)
T cd01788 73 ATVGLAFR 80 (119)
T ss_pred CeEEEEEe
Confidence 56666666
No 46
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.1e-07 Score=76.29 Aligned_cols=74 Identities=23% Similarity=0.388 Sum_probs=59.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+.|+|+-.+.+-..+++|+.+++|.+||+.++.+ +| ++++|+||+||.|.|+.|++.|.+...
T Consensus 3 ~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp---------~D~L~viFaGKeLs~~ttv~~cDL~qq------ 67 (446)
T KOG0006|consen 3 VLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVP---------ADQLRVIFAGKELSNDTTVQNCDLSQQ------ 67 (446)
T ss_pred EEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCC---------hhheEEEEeccccccCceeeccccccc------
Confidence 5567764333333689999999999999999988 55 999999999999999999999988755
Q ss_pred EEEEEE-EcCCc
Q 033467 85 IIMHVV-VQPSL 95 (118)
Q Consensus 85 ~t~hlv-~~~~~ 95 (118)
+.+|++ +||..
T Consensus 68 s~~hi~~lRP~~ 79 (446)
T KOG0006|consen 68 SATHIMLLRPWR 79 (446)
T ss_pred chhhhhccCccc
Confidence 567877 55533
No 47
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.38 E-value=2.2e-06 Score=48.99 Aligned_cols=65 Identities=25% Similarity=0.330 Sum_probs=53.0
Q ss_pred EeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 033467 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (118)
Q Consensus 12 ~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
++.+|.. ..+.+.+++||.+||++|.++++ .+++.++|++.|+.+++...+.++++..| .+++++
T Consensus 3 ~~~~~~~-~~~~~~~~~tv~~l~~~i~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~i~~~ 67 (69)
T cd00196 3 KLNDGKT-VELLVPSGTTVADLKEKLAKKLG-------LPPEQQRLLVNGKILPDSLTLEDYGLQDG------DELVLV 67 (69)
T ss_pred EecCCCE-EEEEcCCCCcHHHHHHHHHHHHC-------cChHHeEEEECCeECCCCCcHHHcCCCCC------CEEEEE
Confidence 3345644 46888999999999999999964 23999999999999999998888999888 457765
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.13 E-value=6.9e-06 Score=53.51 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=38.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec--C-eec--CCCCcccccCCCCCC
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--G-KIL--ENNKTVGQCKIPYGE 79 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~--G-k~L--~D~~tL~~~~i~~g~ 79 (118)
+.+-||||..+|.. -+++++++|+.+|+++|++.++ . +.+.|.|... + ..| .+++||+++||+.||
T Consensus 3 ~~milRvrS~dG~~--Rie~~~~~t~~~L~~kI~~~l~-----~--~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 3 SSMILRVRSKDGMK--RIEVSPSSTLSDLKEKISEQLS-----I--PDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp ---EEEEE-SSEEE--EEEE-TTSBHHHHHHHHHHHS----------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred ccEEEEEECCCCCE--EEEcCCcccHHHHHHHHHHHcC-----C--CCcceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence 45789999999943 4899999999999999999954 1 1445555211 1 234 568999999999994
No 49
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=98.10 E-value=8.1e-05 Score=47.70 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=55.9
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecCCC--CcccccCCCCC
Q 033467 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILENN--KTVGQCKIPYG 78 (118)
Q Consensus 3 ~~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~D~--~tL~~~~i~~g 78 (118)
+++.+.|+||+.+|+.+ ...|.+++||.+|.+.|...... ......+|+ |-.+.|.++ .||+++|+..+
T Consensus 3 ~~~~~~I~vRlpdG~~l-~~~F~~~~tl~~l~~~v~~~~~~------~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~ 75 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRL-QRRFPKSDTLQDLYDFVESQLFS------PEESDFELITAFPRRELTDEDSKTLEEAGLLPS 75 (82)
T ss_dssp TSSEEEEEEEETTSTEE-EEEEETTSBHHHHHHHHHHHHHC------TTTSSEEEEESSSTEECCSTTTSBTCCCTTSSC
T ss_pred CCCEEEEEEECCCCCEE-EEEECCcchHHHHHHHHHHhcCC------CCCccEEEEeCCCCcCCCccccccHHHhcCCCC
Confidence 36889999999999766 68999999999999999988321 012226665 566788543 69999988766
Q ss_pred CCCCceEEEEE
Q 033467 79 EVPGGVIIMHV 89 (118)
Q Consensus 79 ~~~~~~~t~hl 89 (118)
.+++|
T Consensus 76 ------~~l~v 80 (82)
T PF00789_consen 76 ------ATLIV 80 (82)
T ss_dssp ------EEEEE
T ss_pred ------eEEEE
Confidence 56765
No 50
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.65 E-value=0.0005 Score=44.52 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=51.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeec-CCCCcccccCCCCC
Q 033467 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL-ENNKTVGQCKIPYG 78 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI--~~Gk~L-~D~~tL~~~~i~~g 78 (118)
...|.||+.||+.+ ...|..++||.+|.+.|....|.. ......|+ |=.|.| +++.||+++|+...
T Consensus 4 ~t~iqiRlpdG~r~-~~rF~~~~tv~~l~~~v~~~~~~~------~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 4 TTSIQIRLADGKRL-VQKFNSSHRVSDVRDFIVNARPEF------AARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred eeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHhCCCC------CCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 46899999999776 689999999999999999875511 13455665 567877 45899999999854
No 51
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.46 E-value=0.0015 Score=42.89 Aligned_cols=66 Identities=12% Similarity=0.282 Sum_probs=53.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecC--------CCCccccc
Q 033467 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE--------NNKTVGQC 73 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G--k~L~--------D~~tL~~~ 73 (118)
.+.++|.||+.+|+.+ .-.|..++||++|.+-|... + ..+....|+++= |.|. .+.||+++
T Consensus 2 ~~~~~I~iRlp~G~Rl-~rrF~~~~tl~~l~~fv~~~-~-------~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ea 72 (85)
T cd01774 2 PDTVKIVFKLPNGTRV-ERRFLFTQSLRVIHDFLFSL-K-------ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEA 72 (85)
T ss_pred CceEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhC-C-------CCCCcEEEecCCCCccccccccccCcCCCCHHHc
Confidence 3678999999999776 68999999999999999643 3 226778888766 7885 36899999
Q ss_pred CCCCC
Q 033467 74 KIPYG 78 (118)
Q Consensus 74 ~i~~g 78 (118)
||...
T Consensus 73 GL~~s 77 (85)
T cd01774 73 GLSNS 77 (85)
T ss_pred CCCCc
Confidence 99855
No 52
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.35 E-value=0.002 Score=41.74 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=50.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec---C--eecCCCCcccccCCCCC
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPYG 78 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~g 78 (118)
|.|++.-..+.+. .+.++|.+.|..+|++|..+|- -..+|||-|. | +.|.+..+|++|||-.+
T Consensus 1 iqVtV~q~g~~dl-~l~vnPy~pI~k~K~kI~~~~~--------~~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~ 68 (80)
T cd01811 1 IQVTVEQTGYSDW-ILRVNPYSPIRKIKEKIRRSRN--------CSGLQRLSFQEPGGERQLLSSRKSLADYGIFSK 68 (80)
T ss_pred CEEEeeecCCCce-EEEeCCcchHHHHHHHHHHhhC--------cccceEEEeecCCcccccccccccHhhhcceec
Confidence 3566666667676 6999999999999999999964 1569999885 3 26699999999999654
No 53
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.34 E-value=0.0019 Score=41.05 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=49.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecC---CCCcccccCCCCC
Q 033467 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILE---NNKTVGQCKIPYG 78 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~~g 78 (118)
...|+||+.+|+.+ ...|+.++||.+|.+-|...... ....+|+ |-.|.|. ++.||+++|+...
T Consensus 2 ~t~i~iRlpdG~~~-~~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s 70 (77)
T cd01767 2 TTKIQIRLPDGKRL-EQRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNE 70 (77)
T ss_pred cEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCccc
Confidence 46799999999765 68999999999999999987431 3445554 4456774 4899999999843
No 54
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.30 E-value=0.0038 Score=40.17 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=49.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecCC---CCcccccCCCCC
Q 033467 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYG 78 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~D---~~tL~~~~i~~g 78 (118)
.....|+||+.+|+.+ ...|+.++|+.+|.+.|...... .....|+ |-.|.+.+ +.||.++|+...
T Consensus 2 ~~~~~i~iRlp~G~~~-~~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Ps 72 (79)
T cd01772 2 YTETRIQIRLLDGTTL-KQTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPS 72 (79)
T ss_pred CcEEEEEEECCCCCEE-EEEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCCc
Confidence 3568899999999765 67999999999999999977431 2334443 45677743 589999998754
No 55
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.29 E-value=0.00071 Score=45.86 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=51.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecCCCCcccccCCCCCCC-CCc
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYGEV-PGG 83 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G--k~L~D~~tL~~~~i~~g~~-~~~ 83 (118)
+.+++|=... .+ -+..+++.||-+||++++.-+- .| ++.|||.-.. ..|+|.+||++||...... +..
T Consensus 3 ~f~~VrR~kt-ti-f~da~es~tV~elK~~l~gi~~-----~P--vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~ 73 (110)
T KOG4495|consen 3 VFLRVRRHKT-TI-FTDAKESSTVFELKRKLEGILK-----RP--VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQA 73 (110)
T ss_pred eeeeeeecce-eE-EeecCccccHHHHHHHHHHHHh-----CC--CcchheeecCHHHHhhccchhhhccccccccccCC
Confidence 4455544333 33 4789999999999999998743 23 9999997744 4789999999998764432 333
Q ss_pred eEEEEE
Q 033467 84 VIIMHV 89 (118)
Q Consensus 84 ~~t~hl 89 (118)
+.++-|
T Consensus 74 pA~vgL 79 (110)
T KOG4495|consen 74 PATVGL 79 (110)
T ss_pred Cceeee
Confidence 345544
No 56
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.17 E-value=0.0018 Score=41.56 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=47.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE-ecCeecCCCCcccccCCCCCC
Q 033467 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-SSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI-~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.++|.+...+|.. ..+.++.+.+|++|...|.+.+..+.... ......+|. -.|+.|+++.||++++|.+|+
T Consensus 2 ~~rVtv~~~~~~~-~Dl~lP~~vpv~~li~~l~~~~~~~~~~~-~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 2 LCRVTVDAGNGRQ-VDLALPADVPVAELIPELVELLGLPGDDP-PGHGQWVLARAGGRPLDPDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEEE-TT--E-EEEEEETTSBTTHHHHHHHHHS---S----TT-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred EEEEEEEcCCCcE-EEEEcCCCCcHHHHHHHHHHHhCCccCCC-CCcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence 3567777766544 47999999999999999999854211111 112256777 788899999999999999994
No 57
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.15 E-value=0.0059 Score=39.09 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=48.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecCC---CCcccccCCCCC
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYG 78 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~D---~~tL~~~~i~~g 78 (118)
....|+||+.+|+.+ ...|.+++||.+|.+.|...... .....+|+ |-.|.|.+ +.||.++++..+
T Consensus 3 ~~~~I~iRlPdG~ri-~~~F~~~~tl~~v~~~v~~~~~~-------~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~ 73 (80)
T smart00166 3 DQCRLQIRLPDGSRL-VRRFPSSDTLRTVYEFVSAALTD-------GNDPFTLNSPFPRRTFTKDDYSKTLLELALLPS 73 (80)
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHcccC-------CCCCEEEEeCCCCcCCccccccCCHHHCCCCCc
Confidence 568899999999776 68999999999999999554321 12334553 55667753 479999997544
No 58
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00023 Score=57.56 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=57.4
Q ss_pred CceEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033467 4 EELIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g--~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
|..+++-++..+. ++. ++..+-..||.+||.+++...|.+ +-..+|||||+||.|.|...|++.-++...
T Consensus 7 e~~v~lliks~Nq~y~dl-~i~~dl~wtv~~Lk~hls~VyPsk-----pl~~dqrliYsgkllld~qcl~d~lrkq~k-- 78 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDL-SISLDLKWTVGDLKVHLSQVYPSK-----PLELDQRLIYSGKLLLDHQCLTDWLRKQVK-- 78 (391)
T ss_pred CcceEEEecCCCccccce-eeehhhhhhHHHHhhhHhhcCCCC-----CchhhHHHHhhccccccchhHHHHHHHHHH--
Confidence 3556666666555 232 466678889999999999998843 237889999999999999999986544331
Q ss_pred CceEEEEEEEcCC
Q 033467 82 GGVIIMHVVVQPS 94 (118)
Q Consensus 82 ~~~~t~hlv~~~~ 94 (118)
-.++|+|....
T Consensus 79 --~Hv~hlvcnsk 89 (391)
T KOG4583|consen 79 --EHVKHLVCNSK 89 (391)
T ss_pred --HHHHHHhcCCC
Confidence 14467665533
No 59
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.002 Score=54.01 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=52.8
Q ss_pred CCeeeeEE-eCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEEc
Q 033467 16 GSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (118)
Q Consensus 16 g~~~~~~~-v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
|...++++ ++.++|+..||+++.+- +..| |++||+.+.|+.|.|+--+...+|+.| .++|++-.
T Consensus 11 ~gk~y~v~~l~~d~t~~vlKaqlf~L-----TgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn------~~lmMmGt 75 (473)
T KOG1872|consen 11 GGKKYPVETLSTDETPSVLKAQLFAL-----TGVP--PERQKVMVKGGLAKDDVDWGALQIKPN------ETLMMMGT 75 (473)
T ss_pred cCccccceeccCCCchHHHHHHHHHh-----cCCC--ccceeEEEecccccccccccccccCCC------CEEEeecc
Confidence 33566777 99999999999999987 1222 999999999999999988888999988 67887644
No 60
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.39 E-value=0.033 Score=36.10 Aligned_cols=71 Identities=17% Similarity=0.319 Sum_probs=55.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.|++-|+.-+|.. +.+.++.--+|..|-..+++... .+..+.+-..+|..-.+++|.++..|.+|+|.+||
T Consensus 6 kVTvD~t~y~g~~-yDLrl~d~~pikklIdivwe~~k--is~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD 76 (81)
T COG5417 6 KVTVDFTNYNGGT-YDLRLPDYLPIKKLIDIVWESLK--ISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD 76 (81)
T ss_pred EEEEEeEecCCce-EEEeccccchHHHHHHHHHHHhh--ccccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence 4677778788844 57999999999999888887711 11222346789999999999999999999999996
No 61
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.34 E-value=0.048 Score=35.29 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=49.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEE--ecCeecC---CCCcccccCCCC
Q 033467 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKILE---NNKTVGQCKIPY 77 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~-~p~~~e~~p~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~~ 77 (118)
+..++|.||+.+|+.+ .-.|..++++.+|-.-|... .+ ...-+|+ |=-|.+. -+.||.++|+..
T Consensus 2 ~~~~~i~iRlP~G~r~-~rrF~~t~~L~~l~~fv~~~~~~---------~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p 71 (80)
T cd01771 2 EPISKLRVRTPSGDFL-ERRFLGDTPLQVLLNFVASKGYP---------IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP 71 (80)
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCC---------CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence 4678999999999765 68999999999999999876 22 4455664 4556663 257999999875
Q ss_pred C
Q 033467 78 G 78 (118)
Q Consensus 78 g 78 (118)
.
T Consensus 72 ~ 72 (80)
T cd01771 72 Q 72 (80)
T ss_pred C
Confidence 4
No 62
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.32 E-value=0.041 Score=40.41 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=54.0
Q ss_pred EEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCce-eEEEe-cCeec--CCCCcccccCCCCCC
Q 033467 7 IDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLIS-SGKIL--ENNKTVGQCKIPYGE 79 (118)
Q Consensus 7 i~l~~~~~~g~---~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~-qrLI~-~Gk~L--~D~~tL~~~~i~~g~ 79 (118)
|+|-+...+|- ....+.+++++||.+|+.+|.+..| .+... +.|.+ .|+.| .++..++++.-...+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~-------~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP-------IPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC-------CCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 35666778883 3346899999999999999999966 11333 34544 34455 556666665543332
Q ss_pred CCCceEEEEEEEcCCccc
Q 033467 80 VPGGVIIMHVVVQPSLAK 97 (118)
Q Consensus 80 ~~~~~~t~hlv~~~~~~~ 97 (118)
. ...+++|+++..+++
T Consensus 74 ~--~~~~l~l~~rl~GGK 89 (162)
T PF13019_consen 74 S--DFITLRLSLRLRGGK 89 (162)
T ss_pred C--CceEEEEEEeccCCC
Confidence 1 247899998887764
No 63
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.073 Score=36.11 Aligned_cols=67 Identities=16% Similarity=0.308 Sum_probs=53.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+.|+||+.=.+|. ...|.+--++....|...-.++-- .+-+.+|++|.|+-+.+.+|-++.+..+||
T Consensus 19 ~hi~LKV~gqd~~-~~~Fkikr~t~LkKLM~aYc~r~G-------l~~~s~RFlFdG~rI~~~~TP~~L~mEd~D 85 (99)
T KOG1769|consen 19 EHINLKVKGQDGS-VVVFKIKRHTPLKKLMKAYCERQG-------LSMNSLRFLFDGQRIRETHTPADLEMEDGD 85 (99)
T ss_pred ceEEEEEecCCCC-EEEEEeecCChHHHHHHHHHHHcC-------CccceEEEEECCcCcCCCCChhhhCCcCCc
Confidence 4466666555554 446999999999999888887722 239999999999999999999999999995
No 64
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.94 E-value=0.022 Score=36.57 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=45.8
Q ss_pred eCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccc-CCCCCCCCCceEEEEEEEcC
Q 033467 24 YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC-KIPYGEVPGGVIIMHVVVQP 93 (118)
Q Consensus 24 v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~-~i~~g~~~~~~~t~hlv~~~ 93 (118)
|+++++|.+|++.+... | +. +.-....|.|.|+.|+|...|++. ++.+| .+++++..|
T Consensus 1 v~~~d~v~dvrq~L~~~-~---~t--~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~------~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES-P---ET--CYLTNFSLEHNGQRLDDFVELSEIEGIKDG------CVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhC-c---cc--cceeEEEEEECCCccCCchhhhhhhCCCCC------cEEEEEecC
Confidence 46889999999999987 2 11 237788999999999999998887 47766 678888655
No 65
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.15 Score=34.36 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=53.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
-|.|++.=.+|+.+ -|.+-.+++-..|-+..+.+.- .+.+.+|++|.|+-++-++|-.+.+..++|
T Consensus 24 hinLkvv~qd~tel-fFkiKktT~f~klm~af~~rqG-------K~m~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 24 HINLKVVDQDGTEL-FFKIKKTTTFKKLMDAFSRRQG-------KNMSSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred ccceEEecCCCCEE-EEEEeccchHHHHHHHHHHHhC-------cCcceeEEEEcceecCCCCChhhcCCccch
Confidence 45566655677666 5999999999988888887744 348999999999999999999999988775
No 66
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.23 E-value=0.21 Score=32.72 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=48.8
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEE--ecCeec---CCCCcccccCCCCC
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPYG 78 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~-~p~~~e~~p~~~~~qrLI--~~Gk~L---~D~~tL~~~~i~~g 78 (118)
..-.|.||+.+|+.+ .-.|..++++.+|-..|... .+ ++...|+ |=-|.+ +-+.||.++|+...
T Consensus 4 ~~t~i~vRlP~G~r~-~rrF~~~~~L~~v~~fv~~~g~~---------~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~ 73 (82)
T cd01773 4 PKARLMLRYPDGKRE-QIALPEQAKLLALVRHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCPQ 73 (82)
T ss_pred CeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCC---------CCCEEEecCCCCcccCCcccCCCHHHcCCCCC
Confidence 456899999999665 78999999999999999884 22 5556664 445555 33689999999765
No 67
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.0098 Score=37.62 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=43.2
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCC
Q 033467 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 16 g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (118)
|+.+ -+...+++||+++|..|+++.- ..++.+.|=--+-+++|.-+|++|.+.+|
T Consensus 11 GKKV-RvKCn~dDtiGD~KKliaaQtG-------T~~~kivl~k~~~i~kd~I~L~dyeihdg 65 (73)
T KOG3493|consen 11 GKKV-RVKCNTDDTIGDLKKLIAAQTG-------TRPEKIVLKKWYTIFKDHITLSDYEIHDG 65 (73)
T ss_pred CceE-EEEeCCcccccCHHHHHHHhhC-------CChhHhHHHhhhhhhhcccceeeEEeccC
Confidence 5444 4788999999999999999944 12555666555668899999999999988
No 68
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.051 Score=41.61 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=51.2
Q ss_pred EEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCC
Q 033467 7 IDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 7 i~l~~~~~-~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (118)
..++.++. .++++ .+....-+||.++|..+.+.=. .++-.||++|+|++|-|..-|.+|++..|
T Consensus 146 ~~lk~rlTtT~~d~-~lta~~~Dtv~eik~~L~Aaeg-------~D~~sQrif~Sg~~l~dkt~LeEc~iekg 210 (231)
T KOG0013|consen 146 PILKLRLTTTREDF-WLTAPHYDTVGEIKRALRAAEG-------VDPLSQRIFFSGGVLVDKTDLEECKIEKG 210 (231)
T ss_pred cchHHHhhhhhhhe-eecccCcCcHHHHHHHHHHhhc-------cchhhheeeccCCceeccccceeeeecCC
Confidence 34555665 55454 6788888999999999998722 12678999999999999999999999987
No 69
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.23 Score=38.10 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=45.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE-EecC-----eec-CCCCcccccCCCCCCCCCceEEEEEEE
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSG-----KIL-ENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrL-I~~G-----k~L-~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
+..++++.||++||.+++-..- ..++.++| +|.| -.| +++..|..|+..+| ..+|++=
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~~G-------~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg------~rihviD 80 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELLTG-------TEAESMELELYDGDDKKVSALSNEDADLGFYKVEDG------LRIHVID 80 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhhhC-------CCccceEEEEEcCCCceeeeccCCcccccccCCCCc------eEEEEEe
Confidence 4678999999999999998733 22888888 6776 356 55788999999888 7788763
No 70
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=92.82 E-value=0.28 Score=40.47 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=49.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeec-CCCCcccccCCCCC
Q 033467 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL-ENNKTVGQCKIPYG 78 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI--~~Gk~L-~D~~tL~~~~i~~g 78 (118)
.=+|.||+.+|..+ ...|+..-||.+++..|...=|.+ +.+.+-|+ |=-|.| +|+.||+++||.+.
T Consensus 305 tTsIQIRLanG~Rl-V~~fN~sHTv~DIR~fI~~aRp~~------~~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 305 TTSIQIRLANGTRL-VLKFNHSHTVSDIREFIDTARPGD------SSTYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred cceEEEEecCCcee-eeeccCcccHHHHHHHHHhcCCCC------cCCceeeeecCCCcccCCcchhHHhccchhh
Confidence 35788999999877 589999999999999999886632 13334443 334677 66899999999865
No 71
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=90.07 E-value=1.6 Score=27.22 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCC
Q 033467 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (118)
.++.. ..+.+.|++++.++=+...+.+- .++++=.|.|.+|.|+-+.+..-.|+++|
T Consensus 4 ~~~rr-~~vkvtp~~~l~~VL~eac~k~~-------l~~~~~~L~h~~k~ldlslp~R~snL~n~ 60 (65)
T PF11470_consen 4 YNFRR-FKVKVTPNTTLNQVLEEACKKFG-------LDPSSYDLKHNNKPLDLSLPFRLSNLPNN 60 (65)
T ss_dssp TTS-E-EEE---TTSBHHHHHHHHHHHTT---------GGG-EEEETTEEESSS-BHHHH---SS
T ss_pred cCCcE-EEEEECCCCCHHHHHHHHHHHcC-------CCccceEEEECCEEeccccceeecCCCCC
Confidence 45534 46899999999999888887743 23778899999999999999999999988
No 72
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.63 E-value=3.6 Score=25.43 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=37.6
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 16 g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
|.....++++...||.+|.+.+.+++|.. .. .......+..+|+...+ +.-+.+||
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~-~~--~~~~~~~v~vNg~~v~~-----~~~l~~gD 69 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGL-LE--ELLARVRIAVNGEYVRL-----DTPLKDGD 69 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchH-HH--hhhhcEEEEECCeEcCC-----CcccCCCC
Confidence 43434678888899999999999987720 00 01456677778888763 34577773
No 73
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=88.35 E-value=3.4 Score=35.72 Aligned_cols=83 Identities=19% Similarity=0.336 Sum_probs=49.5
Q ss_pred ceEEEEEEeCC-CCeeeeEEeCCcchHHHHHHHHHhhCCCCCc-cCCCCCceeEEEe-c---Ce-ecCCCC---------
Q 033467 5 ELIDIKFRLYD-GSDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS-S---GK-ILENNK--------- 68 (118)
Q Consensus 5 ~~i~l~~~~~~-g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e-~~p~~~~~qrLI~-~---Gk-~L~D~~--------- 68 (118)
..+.|.....+ +..-.++.|=..+||.++|++|.+.+=++.. ...+.++++-|-+ . |+ +|.|..
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~w 267 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGW 267 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTE
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCc
Confidence 44566655432 3333478888999999999999988212211 1223467777733 2 34 676643
Q ss_pred ----cccccCCCCCCCCCceEEEEEEEcC
Q 033467 69 ----TVGQCKIPYGEVPGGVIIMHVVVQP 93 (118)
Q Consensus 69 ----tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
||+.|+|++| .+|-++.+.
T Consensus 268 krLNTL~HY~V~dg------a~vaLv~k~ 290 (539)
T PF08337_consen 268 KRLNTLAHYKVPDG------ATVALVPKQ 290 (539)
T ss_dssp EE--BHHHHT--TT------EEEEEEES-
T ss_pred eEeccHhhcCCCCC------ceEEEeecc
Confidence 5667999999 778877664
No 74
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=88.19 E-value=4.4 Score=25.03 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=48.7
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe----cC--eecCCCCcccccCCCCCCCCCce
Q 033467 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS----SG--KILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~----~G--k~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+++.||+ ...+++++++|+.+|=+.|.+.+. + .+.+..=|-| .| ..|+.+++|.+.....+ .+
T Consensus 1 V~llD~~-~~~~~v~~~~t~~~l~~~v~~~l~-----l-~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~----~~ 69 (80)
T PF09379_consen 1 VRLLDGT-TKTFEVDPKTTGQDLLEQVCDKLG-----L-KEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNN----PP 69 (80)
T ss_dssp EEESSEE-EEEEEEETTSBHHHHHHHHHHHHT-----T-SSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSS----SS
T ss_pred CCCcCCC-cEEEEEcCCCcHHHHHHHHHHHcC-----C-CCccEEEEEEeecCCCcceeccCcccHHHHcCCCC----CC
Confidence 4678995 458999999999999999999832 0 1255666666 23 47788888888765522 23
Q ss_pred EEEEEEEc
Q 033467 85 IIMHVVVQ 92 (118)
Q Consensus 85 ~t~hlv~~ 92 (118)
.++++.++
T Consensus 70 ~~l~frvk 77 (80)
T PF09379_consen 70 FTLYFRVK 77 (80)
T ss_dssp EEEEEEES
T ss_pred EEEEEEEE
Confidence 66777654
No 75
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=88.02 E-value=3.6 Score=27.82 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=46.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-eeEEEecCe--ecCCCCcccccC
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLISSGK--ILENNKTVGQCK 74 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~-~qrLI~~Gk--~L~D~~tL~~~~ 74 (118)
..+.|.+...+..+.+.+.+++++|+.+|-+.+..+. .....+...++ +--|=-.|+ .|..+..|.++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~ 87 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFE 87 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechH
Confidence 4566777766666667899999999999999888763 22212222233 555655666 777888888874
No 76
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=86.59 E-value=4.1 Score=25.37 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=34.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G 61 (118)
+.|+++. |.++..+.++++.|-.+|+.+|...++ ...+..+|-|..
T Consensus 2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~-------~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFG-------LDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhC-------CCCCCeEEEEEC
Confidence 4556655 447788999999999999999999977 123567777763
No 77
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=85.75 E-value=3.4 Score=25.98 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=37.6
Q ss_pred CCCeeeeEEeCCc-chHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 15 DGSDIGPFRYSSA-STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 15 ~g~~~~~~~v~~~-~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.|.....++++.+ +||.+|.+.+.++.|. ... ....+++..+|+...++ .-+++||
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~-l~~---~~~~~~v~vn~~~v~~~-----~~l~dgD 69 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPE-LAA---SRGQVMVAVNEEYVTDD-----ALLNEGD 69 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCch-hhh---hccceEEEECCEEcCCC-----cCcCCCC
Confidence 3434346788876 8999999999998762 110 13456777888888753 4566774
No 78
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=85.64 E-value=4.9 Score=25.30 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=34.9
Q ss_pred CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 15 DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 15 ~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.|.+...++++..+||.+|.+.+.++.|. +... -....+..+|+...++ .-+.+||
T Consensus 16 ~g~~~~~~~~~~~~tv~~L~~~l~~~~p~-l~~~---~~~~~vavN~~~v~~~-----~~l~dgD 71 (82)
T PLN02799 16 TGVSDMTLELPAGSTTADCLAELVAKFPS-LEEV---RSCCVLALNEEYTTES-----AALKDGD 71 (82)
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHChh-HHHH---hhCcEEEECCEEcCCC-----cCcCCCC
Confidence 34444467888899999999999888651 1000 1223466788876543 3456674
No 79
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=85.27 E-value=6.4 Score=27.68 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=39.2
Q ss_pred EeCC-cchHHHHHHHHHhhCCCCCccCC---CCCceeEEEecC-----------------eec---CCCCcccccCCCCC
Q 033467 23 RYSS-ASTVDMLKQRIVSDWPKGKTIVP---KAVTEIKLISSG-----------------KIL---ENNKTVGQCKIPYG 78 (118)
Q Consensus 23 ~v~~-~~tV~~LK~~I~~~~p~~~e~~p---~~~~~qrLI~~G-----------------k~L---~D~~tL~~~~i~~g 78 (118)
.++. ++||.+|++.+.+.++....-.| ..-+.+|+++.. -+| +|+.||.++||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 5676 89999999999998654322122 135666666542 367 78899999999876
No 80
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=83.47 E-value=3.2 Score=26.61 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=24.6
Q ss_pred EEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhh
Q 033467 9 IKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSD 40 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~-~~~tV~~LK~~I~~~ 40 (118)
|.+++.+.++...+.|+ ...||.+||+.|.++
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~ 33 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEK 33 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHH
Confidence 45677777777778886 456999999999877
No 81
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=83.10 E-value=9.4 Score=24.19 Aligned_cols=60 Identities=15% Similarity=0.281 Sum_probs=36.9
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccC-C---CCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIV-P---KAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 16 g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~-p---~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
|.....++++ ..||.+|.+.+.+++|..+... . .--..+.+..+|+..+++.. ..+.+||
T Consensus 14 g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd 77 (88)
T TIGR01687 14 GKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD 77 (88)
T ss_pred CCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC
Confidence 4333356776 8899999999999987321100 0 00234677788887765432 4577774
No 82
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=82.95 E-value=6.8 Score=23.85 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=38.8
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCC
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (118)
.+.+....||.+|.+.+..++|.-. ......+..+|+...+ . -.+..+.+|
T Consensus 15 ~~~~~~~~tv~~ll~~l~~~~p~~~-----~~~~~~v~vN~~~v~~-~-~~~~~l~~g 65 (77)
T PF02597_consen 15 EIEVPEGSTVRDLLEALAERYPELA-----LRDRVAVAVNGEIVPD-D-GLDTPLKDG 65 (77)
T ss_dssp EEEESSTSBHHHHHHHHCHHTGGGH-----TTTTEEEEETTEEEGG-G-TTTSBEETT
T ss_pred EEecCCCCcHHHHHHHHHhhccccc-----cCccEEEEECCEEcCC-c-cCCcCcCCC
Confidence 5788899999999999999976211 1478899999999988 2 334556677
No 83
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=82.58 E-value=4.3 Score=25.28 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=34.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G 61 (118)
+.|++...++ ....+.+..+.|..+|+.+|++.++. .....+|-|..
T Consensus 2 ~~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~-------~~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGL-------LDEDFQLKYKD 48 (84)
T ss_dssp EEEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTT-------STSSEEEEEEE
T ss_pred EEEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCC-------CCccEEEEeeC
Confidence 4555555554 22238899999999999999999871 25788888764
No 84
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=81.71 E-value=2.6 Score=33.33 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=39.6
Q ss_pred eEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCC
Q 033467 21 PFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~-~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (118)
....+...|++|+++.+.++ .. -.+-. ....+|+=-.|+.|-|+.+|++++...|
T Consensus 16 ~~~~s~~~ti~d~~~~~~~~~~k-~~~~~--~r~tlr~e~kgkpl~~~s~l~e~~~~s~ 71 (297)
T KOG1639|consen 16 EKDLSGSETIDDLLKAISAKNLK-ITPYR--IRLTLRVEPKGKPLIDNSKLQEYGDGSG 71 (297)
T ss_pred eecCCCCCcHHHHHHHHHHhhhc-cCccc--hhheeeccCCCccccchhHHHHhccCCC
Confidence 46778888999999888876 11 00011 1444555667999999999999998877
No 85
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=80.98 E-value=9.3 Score=23.60 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=31.3
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+++++.+||.+|-+.+. ++ .....+..+|+++.. +.-+.+||
T Consensus 17 ~~~~~~~~tv~~ll~~l~--~~---------~~~v~v~vNg~iv~~-----~~~l~~gD 59 (70)
T PRK08364 17 EIEWRKGMKVADILRAVG--FN---------TESAIAKVNGKVALE-----DDPVKDGD 59 (70)
T ss_pred EEEcCCCCcHHHHHHHcC--CC---------CccEEEEECCEECCC-----CcCcCCCC
Confidence 578889999999887763 33 566788889998854 34466674
No 86
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=80.35 E-value=4.9 Score=28.77 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=31.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~ 41 (118)
..+.+++.+.+|+.. .+.+++++||.+|-+.|..++
T Consensus 2 ~~~~~~V~l~dg~~~-~~~~~~~~t~~ev~~~v~~~~ 37 (207)
T smart00295 2 KPRVLKVYLLDGTTL-EFEVDSSTTAEELLETVCRKL 37 (207)
T ss_pred CcEEEEEEecCCCEE-EEEECCCCCHHHHHHHHHHHh
Confidence 357899999999654 799999999999999999993
No 87
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=79.88 E-value=5.3 Score=24.39 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=30.5
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccc
Q 033467 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQ 72 (118)
Q Consensus 20 ~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~ 72 (118)
.++++..++|..+||.++... ++ -+||+|-+..++..|++
T Consensus 8 k~~~~~~~~tl~~lr~~~k~~-----------~D--I~I~NGF~~~~d~~L~e 47 (57)
T PF14453_consen 8 KEIETEENTTLFELRKESKPD-----------AD--IVILNGFPTKEDIELKE 47 (57)
T ss_pred EEEEcCCCcCHHHHHHhhCCC-----------CC--EEEEcCcccCCccccCC
Confidence 357899999999999886643 33 56999998887765553
No 88
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=79.17 E-value=7.5 Score=25.13 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=26.3
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033467 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (118)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p 42 (118)
+++..-|.++.-+.++++.+..+|+++|.++++
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~ 34 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFK 34 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 344443447778999999999999999999976
No 89
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=79.11 E-value=7.4 Score=25.62 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=28.3
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033467 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p 42 (118)
.+|+..+|. ++-|.+.++.++.+|++.|.+++-
T Consensus 3 FK~~~~~Gr-vhRf~~~~s~~~~~L~~~I~~Rl~ 35 (86)
T cd06409 3 FKFKDPKGR-VHRFRLRPSESLEELRTLISQRLG 35 (86)
T ss_pred EEeeCCCCC-EEEEEecCCCCHHHHHHHHHHHhC
Confidence 578888994 456999999999999999999964
No 90
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=76.91 E-value=7.3 Score=23.42 Aligned_cols=31 Identities=32% Similarity=0.216 Sum_probs=25.3
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033467 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p 42 (118)
|++.+.+|+ ..+++..+|+.++=+.|...+.
T Consensus 1 I~v~lpdG~---~~~~~~g~T~~d~A~~I~~~l~ 31 (60)
T PF02824_consen 1 IRVYLPDGS---IKELPEGSTVLDVAYSIHSSLA 31 (60)
T ss_dssp EEEEETTSC---EEEEETTBBHHHHHHHHSHHHH
T ss_pred CEEECCCCC---eeeCCCCCCHHHHHHHHCHHHH
Confidence 467779993 4689999999999999998753
No 91
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=74.70 E-value=19 Score=22.84 Aligned_cols=69 Identities=16% Similarity=0.325 Sum_probs=44.2
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE-EecCeecCCCCcccccCCCCCCCCCceEEEEEEEc
Q 033467 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (118)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrL-I~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
++|..+ .++.++..-...+.++-.++ .+.-.+| ++.-.| =-+|..|+-++.+++||+.+| +++.|.++
T Consensus 3 VNGqPv-~VEANvnaPLh~v~akALe~--sgNvgQP--~ENWElkDe~G~vlD~~kKveD~Gftng------vkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPV-QVEANVNAPLHPVRAKALEQ--SGNVGQP--PENWELKDESGQVLDVNKKVEDFGFTNG------VKLFLSLK 71 (76)
T ss_pred eCCCce-eeecCCCCcchHHHHHHHhh--ccccCCC--cccceeeccCCcEeeccchhhhcccccc------ceEEEEee
Confidence 466444 46777777777777666555 1111233 332222 146888998999999999998 77888765
Q ss_pred C
Q 033467 93 P 93 (118)
Q Consensus 93 ~ 93 (118)
.
T Consensus 72 A 72 (76)
T PF10790_consen 72 A 72 (76)
T ss_pred c
Confidence 4
No 92
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=74.42 E-value=14 Score=24.03 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=29.1
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe
Q 033467 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (118)
Q Consensus 20 ~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk 62 (118)
..+.++++.+..+|+++|.+++- .| +++++|-|.-.
T Consensus 13 IaIrvp~~~~y~~L~~ki~~kLk-----l~--~e~i~LsYkde 48 (80)
T cd06406 13 VAIQVARGLSYATLLQKISSKLE-----LP--AEHITLSYKSE 48 (80)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-----CC--chhcEEEeccC
Confidence 46899999999999999999933 11 78899988654
No 93
>PRK06437 hypothetical protein; Provisional
Probab=72.89 E-value=17 Score=22.34 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=32.2
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.++++...||.+|=+.+- ++ +..+-++.+|+++. .++-+.+||
T Consensus 14 ~~~i~~~~tv~dLL~~Lg--i~---------~~~vaV~vNg~iv~-----~~~~L~dgD 56 (67)
T PRK06437 14 TIEIDHELTVNDIIKDLG--LD---------EEEYVVIVNGSPVL-----EDHNVKKED 56 (67)
T ss_pred EEEcCCCCcHHHHHHHcC--CC---------CccEEEEECCEECC-----CceEcCCCC
Confidence 688999999998766542 34 77888899999997 344566775
No 94
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=72.61 E-value=8.8 Score=23.15 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=33.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+++++...||.+|.+.+. ++ .+.+.+..+|+++..+.- ++.-+.+||
T Consensus 8 ~~~~~~~~tv~~ll~~l~--~~---------~~~i~V~vNg~~v~~~~~-~~~~L~~gD 54 (65)
T cd00565 8 PREVEEGATLAELLEELG--LD---------PRGVAVALNGEIVPRSEW-ASTPLQDGD 54 (65)
T ss_pred EEEcCCCCCHHHHHHHcC--CC---------CCcEEEEECCEEcCHHHc-CceecCCCC
Confidence 578888999999988765 33 677888999998854421 123467775
No 95
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=72.05 E-value=1.2 Score=35.82 Aligned_cols=46 Identities=28% Similarity=0.425 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhh-CCCC----CccCCCCCceeE-----EEecCeecCCCCcccccC
Q 033467 27 ASTVDMLKQRIVSD-WPKG----KTIVPKAVTEIK-----LISSGKILENNKTVGQCK 74 (118)
Q Consensus 27 ~~tV~~LK~~I~~~-~p~~----~e~~p~~~~~qr-----LI~~Gk~L~D~~tL~~~~ 74 (118)
++||.++|+.++++ .+.+ .+.+| .+-++ |+|.-|.+.|.+||.+..
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 68999999999996 3222 23455 78888 999999999999998864
No 96
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=66.64 E-value=15 Score=22.52 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=25.8
Q ss_pred EEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhhCC
Q 033467 8 DIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWP 42 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~-~~~tV~~LK~~I~~~~p 42 (118)
.|+++..++ +..+.++ .+.|..+|+++|.+.++
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~ 35 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFG 35 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhC
Confidence 455555544 4568888 89999999999999987
No 97
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=66.15 E-value=7.5 Score=26.32 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=18.4
Q ss_pred EEEecCeecCCCCcccccCCCCC
Q 033467 56 KLISSGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 56 rLI~~Gk~L~D~~tL~~~~i~~g 78 (118)
.|-|+||.|..+++|++| +..+
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkN 24 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKN 24 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCC
Confidence 478999999999999999 4444
No 98
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=64.24 E-value=22 Score=22.41 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=26.4
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033467 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
+++-+++|... .+.+-|++||.++=+++.+.
T Consensus 2 ~~V~LPng~~t-~V~vrpg~ti~d~L~~~c~k 32 (72)
T cd01760 2 CRVYLPNGQRT-VVPVRPGMSVRDVLAKACKK 32 (72)
T ss_pred EEEECcCCCeE-EEEECCCCCHHHHHHHHHHH
Confidence 56778999554 69999999999999888887
No 99
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=64.22 E-value=23 Score=23.33 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=42.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--C--CCCC---ccCCCCCceeEEEecCeecCCCCccccc
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--W--PKGK---TIVPKAVTEIKLISSGKILENNKTVGQC 73 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~--p~~~---e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (118)
+-|+|.+.||+.. .+.|++.+|+.++-+.+..+ . ..+| |..| -++--|.++|-+.|-++
T Consensus 3 ~vvkv~~~Dg~sK-~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P-------~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASK-SLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLP-------HLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCee-EEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecc-------hhhhhhhccchHHHHHH
Confidence 5688889999665 79999999999999999988 1 1123 3333 23456788887766654
No 100
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.69 E-value=46 Score=23.20 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=41.9
Q ss_pred CceEEEEEEeC----CCCeeeeEEeCC-cchHHHHHHHHHhhCCCCCccCC---CCCceeEEEec---------------
Q 033467 4 EELIDIKFRLY----DGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVP---KAVTEIKLISS--------------- 60 (118)
Q Consensus 4 ~~~i~l~~~~~----~g~~~~~~~v~~-~~tV~~LK~~I~~~~p~~~e~~p---~~~~~qrLI~~--------------- 60 (118)
+..|+||+.-. +-+++.--+++- +.||.+++..|-+.++.+..-.| ..-+.+++++.
T Consensus 5 ~~tiTvRvIrsFeyRn~KnvV~Hd~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldh 84 (127)
T KOG4147|consen 5 EVTITVRVIRSFEYRNFKNVVYHDVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDH 84 (127)
T ss_pred ccEEEEEEEeccccccccceeEeccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccC
Confidence 55566665331 222333345665 77999999888888764421111 11233333332
Q ss_pred -Ce-ecC-CCCcccccCCCCC
Q 033467 61 -GK-ILE-NNKTVGQCKIPYG 78 (118)
Q Consensus 61 -Gk-~L~-D~~tL~~~~i~~g 78 (118)
.+ .|+ +++||..|||.+.
T Consensus 85 Dd~w~L~d~~ktL~~~GIenE 105 (127)
T KOG4147|consen 85 DDRWLLKDEDKTLKAAGIENE 105 (127)
T ss_pred CcceeecCccchHHHhccCcc
Confidence 22 454 5789999999765
No 101
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=62.51 E-value=31 Score=22.86 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=37.6
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEEcCCcc
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA 96 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~~~~ 96 (118)
...++=...+..||..++.++- .+-+.=.+-.....|+++++|-+-+++-. +.+.+.+=+++..+
T Consensus 6 ~q~mDI~epl~~Lk~lLe~Rl~-------~~L~~~~f~LQD~~L~~~k~L~dQcVqge----GlVQlnvQi~s~~~ 70 (88)
T PF11620_consen 6 MQHMDIREPLSTLKKLLERRLG-------ISLSDYEFWLQDIQLEPHKSLVDQCVQGE----GLVQLNVQIKSNQG 70 (88)
T ss_dssp EEEEESSSBGGGHHHHSHHHH--------S--SS-EEEETTEE--TTSBTTTSS--------SEEEEEEEEE--TT
T ss_pred EEEEecCCcHHHHHHHHHHhhC-------CCcCCCeEEeccceecCCccHHHhhcccc----CEEEEEEEEEecCC
Confidence 4566777788999999999843 12444455557777999999999888633 24555555555444
No 102
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=62.35 E-value=8 Score=27.90 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=23.6
Q ss_pred ecCe-ecCCCCcccccCCCCCCCCCceEEEEEEEcCCccc
Q 033467 59 SSGK-ILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAK 97 (118)
Q Consensus 59 ~~Gk-~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~~~~~ 97 (118)
+.|+ ..+|++||.++++.-||+ +.+.+.++...
T Consensus 108 ~~g~Kg~ddnktL~~~kf~iGD~------lDVaI~~p~~~ 141 (151)
T KOG3391|consen 108 CLGRKGIDDNKTLQQTKFEIGDY------LDVAITPPNRR 141 (151)
T ss_pred ccCcccCCccchhhhCCccccce------EEEEecCcccC
Confidence 3465 458999999999999976 55555554443
No 103
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=62.22 E-value=43 Score=22.14 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=34.1
Q ss_pred eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ec--Ce-ecCC-CCcccccCCCCC
Q 033467 19 IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SS--GK-ILEN-NKTVGQCKIPYG 78 (118)
Q Consensus 19 ~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI--~~--Gk-~L~D-~~tL~~~~i~~g 78 (118)
.....|+..+||..+...+.+.+- . ..+.||= |+ +. .|.+ ..||++++|..|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~-------i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~g 72 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFN-------I-QEETRLWNKYSENSYELLNNPEITVEDAGLYDG 72 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT---------TS-EEEEEECTTTCEEEE--TTSBTTTTT--TT
T ss_pred HhHhhccccChHHHHHHHHHHHhC-------C-CccceehhccCCcchhhhCCCCccHHHccCcCC
Confidence 446789999999999999999865 1 4446772 22 22 4655 579999999988
No 104
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=62.03 E-value=55 Score=24.50 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=29.9
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE--EecCee---cCCCCccccc
Q 033467 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKI---LENNKTVGQC 73 (118)
Q Consensus 20 ~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrL--I~~Gk~---L~D~~tL~~~ 73 (118)
+.+-++.+.||.+|-+.+...+.- ...+...+|| +++||+ +..+.+|++.
T Consensus 36 ~~~~vpk~~tV~Dll~~l~~k~~~----~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEELQKKVGF----SEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEE--BTT-BHHHHHHHHHTT--------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEECCCCCHHHHHHHHHHHcCC----CcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 467889999999999999999431 1112557777 778885 5677777765
No 105
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=60.12 E-value=71 Score=27.25 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=46.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCC--ccC--CCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIV--PKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~--e~~--p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
-+|||...|.. -+++.++++.+.|-.+|...+..+. +.+ -..++.|-.||+ +..++|+.++|+..|+
T Consensus 2 i~rfRsk~G~~--Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s---~l~dqt~~dlGL~hGq 72 (571)
T COG5100 2 IFRFRSKEGQR--RVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFS---LLKDQTPDDLGLRHGQ 72 (571)
T ss_pred eEEEecCCCce--eeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeee---cccccChhhhccccCc
Confidence 47899999953 4899999999999999998854331 100 012333444443 4567899999999993
No 106
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=60.10 E-value=47 Score=21.90 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=37.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecCCCCcccccCCCCC
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYG 78 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G--k~L~D~~tL~~~~i~~g 78 (118)
-+.++..+|+.++-++++..-= +--..|.+-..+|+-+.| +.|..+.|+++.||..-
T Consensus 18 Lv~VDt~dTmdqVA~k~A~HsV-GrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~ 76 (85)
T PF06234_consen 18 LVPVDTEDTMDQVAAKVAHHSV-GRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPM 76 (85)
T ss_dssp EEEEETT-BHHHHHHHHHTTTT-TTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TT
T ss_pred EEEeCCCCcHHHHHHHHhhhhc-ceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcc
Confidence 4788999999999999997610 000111125588999999 99999999999999754
No 107
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=59.76 E-value=51 Score=22.24 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=25.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
-||+--.|+ .+..+..+.++||++|-..+...
T Consensus 4 ~IRIFr~D~-Tf~Tls~~l~tTv~eli~~L~rK 35 (97)
T cd01775 4 CIRVFRSDG-TFTTLSCPLNTTVSELIPQLAKK 35 (97)
T ss_pred EEEEEecCC-cEEEEEcCCcCcHHHHHHHHHHh
Confidence 355555677 45579999999999999999988
No 108
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=59.41 E-value=24 Score=29.20 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=43.9
Q ss_pred eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCC--CCcccccCCCCCC
Q 033467 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN--NKTVGQCKIPYGE 79 (118)
Q Consensus 18 ~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D--~~tL~~~~i~~g~ 79 (118)
..+++.+..+....+|+..++...- ++ .+..-|||+++.|.+ ..+|.+||+..+|
T Consensus 13 ~~~~i~v~~dg~L~nl~aL~~~d~g-----~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 13 KKFPIPVTTDGELNNLAALCWKDTG-----IV--YDPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred eeeccccccccchhhHHHHHHHHhC-----cc--cchhhcccCCCccccchhhhhhhcccccce
Confidence 4457888888889999999988832 11 788889999999955 5888999999885
No 109
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=58.02 E-value=53 Score=29.59 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=36.9
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecC
Q 033467 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILE 65 (118)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~ 65 (118)
.|-+.+++ ...+-++++.|+..+++.|..+ +| ...|-|+|.|....
T Consensus 318 iFs~~~~~-~~~~~~~~~ntl~~~~~~I~~~Tgip---------e~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 318 IFSMVQAT-SHEYYVHADNTLHSLIERISKQTGIP---------EGKQELLFEGGLSH 365 (732)
T ss_pred EEeeccce-EEEEecChhhhHHHHHHHHHHhhCCC---------CccceeeeecCccc
Confidence 35556774 4478999999999999999998 54 88899999988543
No 110
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=56.77 E-value=30 Score=25.27 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=32.1
Q ss_pred eEEeCC-cchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccc
Q 033467 21 PFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (118)
Q Consensus 21 ~~~v~~-~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (118)
.++++. .+.+..+++...+.+|= +-+ |+-|+++....|+++|
T Consensus 78 ~lele~~~~~ie~I~~iCee~lpf-------~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 78 ILELEDEEDVIEKIREICEEVLPF-------GYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEecCcHHHHHHHHHHHHHhCCC-------ceE----eeeeEEeccCCchhhh
Confidence 478877 77888888777777762 122 4579999999999997
No 111
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=55.82 E-value=58 Score=22.65 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=37.8
Q ss_pred ceEEEEEEeCCCCeee---eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeec
Q 033467 5 ELIDIKFRLYDGSDIG---PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~---~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L 64 (118)
..|.|+|+-.++..+. .+.++++.|++.+-..|...+- ..++++-++|=..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lk-------l~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLK-------LQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhC-------CcccCeEEEEEcCcc
Confidence 4588888877663332 4799999999999999988832 127777777765533
No 112
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=55.76 E-value=33 Score=22.35 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=24.0
Q ss_pred EEeCCCCeeeeEEeCC--cchHHHHHHHHHhhCC
Q 033467 11 FRLYDGSDIGPFRYSS--ASTVDMLKQRIVSDWP 42 (118)
Q Consensus 11 ~~~~~g~~~~~~~v~~--~~tV~~LK~~I~~~~p 42 (118)
++..-+.++..+.+++ +.+-.+|++.|..++.
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~ 36 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG 36 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 3333333566789988 7799999999999965
No 113
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=55.65 E-value=56 Score=21.49 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=44.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe--ecCCCCcccccC
Q 033467 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK--ILENNKTVGQCK 74 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk--~L~D~~tL~~~~ 74 (118)
...+.|.+.+.+......+.++.++|+.+|-+.+...+-.. -..+...++--|==.|+ .|..+.+|.+|.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~-~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKD-LLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHH-TT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhh-cCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 45688888888665667899999999999988887761100 00111122556655566 777888899874
No 114
>smart00455 RBD Raf-like Ras-binding domain.
Probab=54.38 E-value=50 Score=20.48 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=35.8
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecC
Q 033467 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE 65 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G--k~L~ 65 (118)
.++-+++|..+ .+.+-|+.||.++=+.+.+..- ..++...|...| +.|+
T Consensus 2 ~~v~LP~~~~~-~V~vrpg~tl~e~L~~~~~kr~-------l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRT-VVKVRPGKTVRDALAKALKKRG-------LNPECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEE-EEEECCCCCHHHHHHHHHHHcC-------CCHHHEEEEEcCCCccee
Confidence 46678999665 6999999999999999888822 127777776655 3553
No 115
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=53.90 E-value=49 Score=20.15 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=37.5
Q ss_pred EEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCC
Q 033467 7 IDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66 (118)
Q Consensus 7 i~l~~~~~~g~---~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D 66 (118)
|.|+|...+|. .-.++.++.+.|..+|-+.|.+-.+.+++ +-.-.++..|..|.+
T Consensus 2 v~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~-----~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 2 VQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEE-----PVPFDFLINGEELRT 59 (65)
T ss_pred EEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCC-----CCcEEEEECCEEeec
Confidence 67888887772 11268999999999999888776632222 334566777777754
No 116
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=53.54 E-value=30 Score=22.43 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.3
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G 61 (118)
.+.+.+..+..+|.++|++.++ ..++..+|-|.-
T Consensus 10 ai~v~~g~~y~~L~~~ls~kL~-------l~~~~~~LSY~~ 43 (78)
T cd06411 10 ALRAPRGADVSSLRALLSQALP-------QQAQRGQLSYRA 43 (78)
T ss_pred EEEccCCCCHHHHHHHHHHHhc-------CChhhcEEEecC
Confidence 5788999999999999999966 338888888764
No 117
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=52.45 E-value=17 Score=20.15 Aligned_cols=17 Identities=6% Similarity=0.348 Sum_probs=13.5
Q ss_pred CCceeEEEecCeec-CCC
Q 033467 51 AVTEIKLISSGKIL-ENN 67 (118)
Q Consensus 51 ~~~~qrLI~~Gk~L-~D~ 67 (118)
..+++.++|+|+++ -|+
T Consensus 4 ~~~qLTIfY~G~V~Vfd~ 21 (36)
T PF06200_consen 4 ETAQLTIFYGGQVCVFDD 21 (36)
T ss_pred CCCcEEEEECCEEEEeCC
Confidence 48889999999976 343
No 118
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=50.30 E-value=93 Score=26.19 Aligned_cols=77 Identities=10% Similarity=0.074 Sum_probs=49.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe-cCeecCCCCcccccCCCCCCCCCceE
Q 033467 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-SGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~-~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.+|++.-.+. ...+-++.+..|.+|--.|.+....+..+ +.....-.|-- .|..|+-+.||.+.+|.+| .
T Consensus 3 ~RVtV~~~~~--~~DlaLPa~~PvaellP~ll~~~~~~~~~-~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG------~ 73 (452)
T TIGR02958 3 CRVTVLAGRR--AVDVALPADVPVAELIPDLVDLLDDRGAA-ELGAVRWALARAGGSPLDPDASLAEAGVRDG------E 73 (452)
T ss_pred EEEEEeeCCe--eeeeecCCCCcHHHHHHHHHHHhCccccc-CCCCcceEEecCCCCCCCCCCCHHHcCCCCC------C
Confidence 3455544433 34688899999999988888774321100 01133334432 5669999999999999999 4
Q ss_pred EEEEEEc
Q 033467 86 IMHVVVQ 92 (118)
Q Consensus 86 t~hlv~~ 92 (118)
+++|..+
T Consensus 74 ~L~L~p~ 80 (452)
T TIGR02958 74 LLVLVPA 80 (452)
T ss_pred eEEEeeC
Confidence 5887653
No 119
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=49.90 E-value=56 Score=23.91 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=35.9
Q ss_pred EEeCCCCeeeeEEeCCcc-hHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccc
Q 033467 11 FRLYDGSDIGPFRYSSAS-TVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (118)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~-tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (118)
++...| .+ .+++++.+ +++.+++...+-+|=+ -+ ++-|+++.+..|..+|
T Consensus 78 L~VkvG-ri-~~eie~e~~~~e~ie~ic~e~lPf~-------y~----v~vG~F~r~kpTVTDy 128 (165)
T COG4055 78 LKVKVG-RI-ILEIEDEDETMEKIEEICDEMLPFG-------YE----VRVGKFTRRKPTVTDY 128 (165)
T ss_pred EEEEee-EE-EEEecCcHhHHHHHHHHHHHhCCCc-------ee----eeeeeeeccCCcchhh
Confidence 334556 33 47888775 8888887777767722 22 4679999999999997
No 120
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=49.66 E-value=63 Score=20.21 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=16.6
Q ss_pred EEeCC-cchHHHHHHHHHhhCC
Q 033467 22 FRYSS-ASTVDMLKQRIVSDWP 42 (118)
Q Consensus 22 ~~v~~-~~tV~~LK~~I~~~~p 42 (118)
+++++ ..||.+|++.+.++.|
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~ 40 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGD 40 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCc
Confidence 45543 4799999999999876
No 121
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=49.55 E-value=18 Score=23.27 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.6
Q ss_pred eEEeCCcchHHHHHHHHHhh
Q 033467 21 PFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~ 40 (118)
+++++.++|+.++|+.++++
T Consensus 3 ~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 3 PLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEETT-BHHHHHHHHHHH
T ss_pred EEEccCcCcHHHHHHHHHHH
Confidence 68899999999999999988
No 122
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=49.34 E-value=50 Score=19.68 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=32.3
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+++++..+||.+|.+.+. ++ +....+..+|+++.-+. -.++-+.+||
T Consensus 7 ~~~~~~~~tv~~ll~~l~--~~---------~~~v~v~vN~~iv~~~~-~~~~~L~~gD 53 (64)
T TIGR01683 7 PVEVEDGLTLAALLESLG--LD---------PRRVAVAVNGEIVPRSE-WDDTILKEGD 53 (64)
T ss_pred EEEcCCCCcHHHHHHHcC--CC---------CCeEEEEECCEEcCHHH-cCceecCCCC
Confidence 578888899999987754 33 67778889999884221 1224577775
No 123
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=48.29 E-value=48 Score=24.08 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=32.3
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccc
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (118)
.++++....+..+++...+.+|=+ -+ |.-|+++.+..|++||
T Consensus 77 ~le~~~~~~i~~I~eiC~e~~pF~-------y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 77 ILELEDEDIVEEIEEICKEMLPFG-------YE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEecCHHHHHHHHHHHHhhCCCc-------eE----eeeeeEeecCCchhhh
Confidence 367778888889988887777721 11 5679999999999997
No 124
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=48.06 E-value=78 Score=20.81 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=27.2
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033467 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p 42 (118)
++++..-+.++..+.++++.+-.+|.++|.+.+.
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~ 36 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFG 36 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4555553336778999999999999999999976
No 125
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=46.65 E-value=53 Score=21.24 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=24.1
Q ss_pred cchHHHHHHHHHhh-CCCCCccCCCCCceeEEEecCee----cCCCCcccccCCCCCC
Q 033467 27 ASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLISSGKI----LENNKTVGQCKIPYGE 79 (118)
Q Consensus 27 ~~tV~~LK~~I~~~-~p~~~e~~p~~~~~qrLI~~Gk~----L~D~~tL~~~~i~~g~ 79 (118)
.+|+.+|-++|... +.-. .|.=.-.-++||..-. -..+++|+++||.+|.
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~---~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs 62 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMN---EPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGS 62 (87)
T ss_dssp T-BHHHHHHHCCCCCS--S---SEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-
T ss_pred hCcHHHHHHHHHHhccCCC---CCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCC
Confidence 45888888877654 2200 0000114455555543 1225899999999984
No 126
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=45.72 E-value=59 Score=20.10 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=34.7
Q ss_pred EEEEEEeCCCCe---eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE
Q 033467 7 IDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (118)
Q Consensus 7 i~l~~~~~~g~~---~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI 58 (118)
-.||+...++.. ...+.+++++|+.+|-+.+.+++- ++.++..-.|.
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~-----l~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFG-----LAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTT-----TSSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhC-----CCCCCCCEEEE
Confidence 357777877751 568999999999999999999843 12346666773
No 127
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=45.70 E-value=79 Score=20.21 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=25.3
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033467 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
++.++||+.. .+.+-|..||.++=.++.+.
T Consensus 3 rV~LPdg~~T-~V~vrpG~ti~d~L~kllek 32 (73)
T cd01817 3 RVILPDGSTT-VVPTRPGESIRDLLSGLCEK 32 (73)
T ss_pred EEECCCCCeE-EEEecCCCCHHHHHHHHHHH
Confidence 5678999665 69999999999988888877
No 128
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.64 E-value=93 Score=21.02 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=22.7
Q ss_pred ceEEEEEEeCCCCeee-------eEEe---CCcchHHHHHHHHHhh
Q 033467 5 ELIDIKFRLYDGSDIG-------PFRY---SSASTVDMLKQRIVSD 40 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~-------~~~v---~~~~tV~~LK~~I~~~ 40 (118)
++.+++|++..|.+.. .+.. +..+||.+|-..|...
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~ 48 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGK 48 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHH
Confidence 4566777777774431 1222 2457899998888876
No 129
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=44.12 E-value=13 Score=24.22 Aligned_cols=12 Identities=25% Similarity=0.955 Sum_probs=10.3
Q ss_pred CCCCCceEEeeC
Q 033467 107 SPRKIVCSCSIL 118 (118)
Q Consensus 107 k~~~~~c~c~i~ 118 (118)
-|...+|+|++|
T Consensus 101 pp~h~nCRC~~i 112 (112)
T PF04233_consen 101 PPEHPNCRCTVI 112 (112)
T ss_pred CCCCCCCeeeeC
Confidence 567899999986
No 130
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=43.91 E-value=10 Score=30.52 Aligned_cols=47 Identities=28% Similarity=0.466 Sum_probs=35.4
Q ss_pred CCCCeeeeEEeC-CcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcc
Q 033467 14 YDGSDIGPFRYS-SASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTV 70 (118)
Q Consensus 14 ~~g~~~~~~~v~-~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL 70 (118)
.+|..+ .+.+. .+..|..||+++... ++ ++-|++.|.|..|.|+.++
T Consensus 290 ~dg~~~-~~~~~~~~~~~~~~k~k~~~~~~i~---------~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVI-KITVQSLSENVASLKEKIADESQIP---------ANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCcee-eeccccccccccccccccccccccc---------hhheeeccCCcccCccccc
Confidence 355333 34444 667889999999888 54 9999999999999988544
No 131
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=41.35 E-value=1e+02 Score=20.34 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=27.3
Q ss_pred EEEEEE-eCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033467 7 IDIKFR-LYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (118)
Q Consensus 7 i~l~~~-~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p 42 (118)
+.|.+- +.+|-....+.+.|.+|+.+|-..+++++-
T Consensus 2 l~Va~q~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf~ 38 (87)
T cd01776 2 LRVAFQDVNSGCTGKTLLVRPYITTEDVCQLCAEKFK 38 (87)
T ss_pred eeEEeecCCCCceeeeeecCCCCcHHHHHHHHHHHhc
Confidence 344443 356655567999999999999999999854
No 132
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.43 E-value=47 Score=26.60 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=30.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
..-+|.||+.||+.+ ...|++..+...|+.-|...
T Consensus 209 s~crlQiRl~DG~Tl-~~tF~a~E~L~~VR~wVd~n 243 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTL-TQTFNARETLAAVRLWVDLN 243 (290)
T ss_pred cceEEEEEcCCCCee-eeecCchhhHHHHHHHHHHh
Confidence 456789999999554 78999999999999999987
No 133
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=39.23 E-value=96 Score=23.81 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=29.5
Q ss_pred CCCCceEEEEEE-eCCC------CeeeeEEeCCcchHHHHHHHHHhhC
Q 033467 1 MPDEELIDIKFR-LYDG------SDIGPFRYSSASTVDMLKQRIVSDW 41 (118)
Q Consensus 1 ~~~~~~i~l~~~-~~~g------~~~~~~~v~~~~tV~~LK~~I~~~~ 41 (118)
|+++..++|++. ...+ .+.+.+++++.+||.++=..|.+++
T Consensus 1 ~~~~~~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~ 48 (244)
T PRK12385 1 MAEMKNLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDNL 48 (244)
T ss_pred CCCCcEEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHhc
Confidence 788888888854 4322 1334567779999999988888764
No 134
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=38.77 E-value=38 Score=27.91 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=44.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC---eecC--CCCcccccCCCCC
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KILE--NNKTVGQCKIPYG 78 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G---k~L~--D~~tL~~~~i~~g 78 (118)
.|.+|+.+|+.. -..|-.+.+|.-|=..+..+.. +. .-...+|+++- |-|. .+.||.++||.+.
T Consensus 279 ~i~vR~pdG~R~-qrkf~~sepv~ll~~~~~s~~d----g~--~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS 347 (356)
T KOG1364|consen 279 SIQVRFPDGRRK-QRKFLKSEPVQLLWSFCYSHMD----GS--DKKRFKLVQAIPASKTLDYGADATFKEAGLANS 347 (356)
T ss_pred EEEEecCCccHH-HHhhccccHHHHHHHHHHHhhc----cc--ccccceeeecccchhhhhccccchHHHhccCcc
Confidence 488889999765 3566777777766555555422 11 16677888887 6663 4799999999865
No 135
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=38.30 E-value=35 Score=22.09 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=18.4
Q ss_pred eEEeCCcchHHHHHHHHHhh
Q 033467 21 PFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~ 40 (118)
.+.++.++|+.++|+.++++
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQ 22 (78)
T ss_pred eEEccccccHHHHHHHHHHH
Confidence 57899999999999999988
No 136
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=37.59 E-value=97 Score=20.49 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=29.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033467 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
.++|++-+.+|..+ .+++.-+++..+|=+.+..+
T Consensus 1 ~V~L~V~Lpdg~~i-~V~v~~s~~a~~Vleav~~k 34 (87)
T cd01777 1 DVELRIALPDKATV-TVRVRKNATTDQVYQALVAK 34 (87)
T ss_pred CeEEEEEccCCCEE-EEEEEEcccHHHHHHHHHHH
Confidence 47899999999776 68999999999999999988
No 137
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=36.32 E-value=48 Score=26.54 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=37.1
Q ss_pred EeCCcchHHHHHHHHHhhC---CCCCc-----cCCCCCceeEEEecCeecCCCCcccccC
Q 033467 23 RYSSASTVDMLKQRIVSDW---PKGKT-----IVPKAVTEIKLISSGKILENNKTVGQCK 74 (118)
Q Consensus 23 ~v~~~~tV~~LK~~I~~~~---p~~~e-----~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 74 (118)
..+.--.|.-+...|.+++ |.... ..+...+.+-|+|+|++|+.+-||+..+
T Consensus 253 ~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr 312 (331)
T PF11816_consen 253 NAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVR 312 (331)
T ss_pred cccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHH
Confidence 3334457888889999987 21111 1113488899999999999999999875
No 138
>KOG4261 consensus Talin [Cytoskeleton]
Probab=35.54 E-value=59 Score=29.87 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=43.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe------cCeecCCCCcccccCCCCCC
Q 033467 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS------SGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~------~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.++|++-+. ......-|+|+++|.+--..|.+++|... .-+++..|.. .|-.|+...||..|-+.++|
T Consensus 3 ~lsl~i~~~--~v~ktmqfepst~vyda~~~ire~~~~~~----~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d 76 (1003)
T KOG4261|consen 3 ALSLKISSA--NVVKTMQFEPSTLVYDACKVIREKFAEAD----VGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGD 76 (1003)
T ss_pred eeEEEEEec--ceeeeeeecCchHHHHHHHHHHHHhhhcc----cCchhcceeeecCCcccceeecCCccHHHHHHhccc
Confidence 345555444 34457899999999999999999987321 1144444432 24466777777777666664
No 139
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=35.42 E-value=1.1e+02 Score=18.95 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=25.2
Q ss_pred EEEEeCC--CCeeeeEEeCCcchHHHHHHHHHhhC
Q 033467 9 IKFRLYD--GSDIGPFRYSSASTVDMLKQRIVSDW 41 (118)
Q Consensus 9 l~~~~~~--g~~~~~~~v~~~~tV~~LK~~I~~~~ 41 (118)
||+...+ +.....+.++.++|..+|-+.+.+++
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~ 36 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKF 36 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHh
Confidence 4555555 22556899999999999999999883
No 140
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=35.00 E-value=89 Score=26.73 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=45.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeec--CC-CCcccccCCCCC
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL--EN-NKTVGQCKIPYG 78 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L--~D-~~tL~~~~i~~g 78 (118)
+.++|.|||.||+.+ .-.|+.+.-...+++.|...---+.. .=++---|=-|.. +| +++|.++++...
T Consensus 313 d~~rLqiRLPdGssf-te~Fps~~vL~~vr~yvrq~~~i~~g-----~f~LatpyPRReft~eDy~KtllEl~L~ps 383 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSF-TEKFPSTSVLRMVRDYVRQNQTIGLG-----AFDLATPYPRREFTDEDYDKTLLELRLFPS 383 (506)
T ss_pred ceeEEEEecCCccch-hhcCCcchHHHHHHHHHHhccccccc-----ceeeccccccccccchhhhhhHHHhccCCc
Confidence 568999999999776 46888888888999988865111110 1111223555555 33 689999988754
No 141
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=33.98 E-value=55 Score=22.88 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=31.8
Q ss_pred EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccc
Q 033467 23 RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (118)
Q Consensus 23 ~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (118)
-|+.+.||+++...|..++. .+++++=|..++-++.-+.++++.
T Consensus 46 lVP~d~tV~qF~~iIRkrl~-------l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALG-------TSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcC-------CChhHEEEEECCccCCccchHHHH
Confidence 69999999999999999855 336665444444455667788763
No 142
>PF00894 Luteo_coat: Luteovirus coat protein; InterPro: IPR001517 Barley yellow dwarf virus (BYDV) can be separated into two groups based on serological relationships, presumably governed by the viral capsid structure []. Coding regions of coat proteins have been identified for the MAV-PS1, P-PAV (group 1) and NY-RPV (group 2) isolates of BYDV. Group 1 proteins show 71% sequence similarity to each other, 51% similarity to those of group 2, and a high degree of similarity to those from other luteoviruses (including coat proteins from Beet western yellows virus (BWYV) [] and Potato leafroll virus (PLrV) [, ]). Among luteovirus coat protein sequences in general, several highly conserved domains can be identified, while other domains differentiate group 1 isolates from group 2 and other luteoviruses. Sequence comparisons between the genomes of PLrV, BWYV and BYDV have revealed ~65% protein sequence similarity between the capsid proteins of BWYV and PLrV and ~45% similarity between BYDV and PLrV []. The N-terminal regions of these sequences, like those of many plant virus capsid proteins, is highly basic. These regions may be involved in protein-RNA interaction.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=33.51 E-value=1.2e+02 Score=21.75 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=37.2
Q ss_pred eEEEEEEe-----CCCCeeeeEEeCCcchHHHHHHHHHhh---------CCCC----CccCCCCCceeEEEecCe
Q 033467 6 LIDIKFRL-----YDGSDIGPFRYSSASTVDMLKQRIVSD---------WPKG----KTIVPKAVTEIKLISSGK 62 (118)
Q Consensus 6 ~i~l~~~~-----~~g~~~~~~~v~~~~tV~~LK~~I~~~---------~p~~----~e~~p~~~~~qrLI~~Gk 62 (118)
.|.|.|+. ..| .| -+|+++..+...|.-.|..- |+.. .+-...+.+|.+|+|.|-
T Consensus 45 ~v~v~f~SeAsstt~G-sI-ayElD~~ck~s~l~S~in~f~I~k~g~ksf~a~~InG~~w~~ss~dQF~iLYKgN 117 (138)
T PF00894_consen 45 NVKVEFISEASSTTSG-SI-AYELDPHCKQSTLGSYINKFSITKNGSKSFPAKQINGKEWHDSSEDQFRILYKGN 117 (138)
T ss_pred EEEEEEEeecccCCCc-cE-EEEecCccchhhhhheeeeEeeecccccccchhccCCccccccCcceEEEEEecC
Confidence 46777776 234 33 48999999999988777532 4432 133445688899999995
No 143
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=33.14 E-value=1.1e+02 Score=18.30 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=33.0
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+| .+++++...||.+|-+.+... ...+.+-.+|+++.-+. -++.-+.+||
T Consensus 5 vNg---~~~~~~~~~tl~~ll~~l~~~-----------~~~vaVavN~~iv~r~~-w~~~~L~~gD 55 (66)
T PRK08053 5 FND---QPMQCAAGQTVHELLEQLNQL-----------QPGAALAINQQIIPREQ-WAQHIVQDGD 55 (66)
T ss_pred ECC---eEEEcCCCCCHHHHHHHcCCC-----------CCcEEEEECCEEeChHH-cCccccCCCC
Confidence 466 357888889999988765432 44577788898885221 1223467775
No 144
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=32.63 E-value=1.1e+02 Score=18.05 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=32.1
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+| .++++++..||.+|=+.+. ++ ....-+.++|.++.-... .+.-+.+||
T Consensus 5 vNG---~~~~~~~~~tl~~lL~~l~--~~---------~~~vav~vNg~iv~r~~~-~~~~l~~gD 55 (66)
T PRK05659 5 LNG---EPRELPDGESVAALLAREG--LA---------GRRVAVEVNGEIVPRSQH-ASTALREGD 55 (66)
T ss_pred ECC---eEEEcCCCCCHHHHHHhcC--CC---------CCeEEEEECCeEeCHHHc-CcccCCCCC
Confidence 466 2578888889888765432 44 677778889987753221 123466775
No 145
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=31.84 E-value=1.4e+02 Score=19.18 Aligned_cols=62 Identities=6% Similarity=0.168 Sum_probs=38.4
Q ss_pred CCCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 2 PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 2 ~~~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++.....+++. .+| -+.++++..||.+|=+.+ .++ +..+-+-.+|.++.-+ .-++.-+.+||
T Consensus 12 ~~~~~~~m~I~-VNG---~~~~~~~~~tl~~LL~~l--~~~---------~~~vAVevNg~iVpr~-~w~~t~L~egD 73 (84)
T PRK06083 12 EGAAMVLITIS-IND---QSIQVDISSSLAQIIAQL--SLP---------ELGCVFAINNQVVPRS-EWQSTVLSSGD 73 (84)
T ss_pred cCCCCceEEEE-ECC---eEEEcCCCCcHHHHHHHc--CCC---------CceEEEEECCEEeCHH-HcCcccCCCCC
Confidence 34344455543 355 257888888988876654 244 6667777899888322 23345677885
No 146
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=31.21 E-value=1.4e+02 Score=24.56 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=30.7
Q ss_pred EEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCe
Q 033467 9 IKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK 62 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~-~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk 62 (118)
|.+|+.+.+++.-+.|+. ..+|-+||..|-.+ +-. ..+-+-|||.|.
T Consensus 5 I~YrFkSqkn~SRI~FdGTGl~vfdlKrEII~q~Klg~-------g~DFdLl~yn~~ 54 (427)
T COG5222 5 INYRFKSQKNFSRISFDGTGLPVFDLKREIINQRKLGS-------GKDFDLLFYNGE 54 (427)
T ss_pred eEEEeeccCCcceeEeccCCccHHHHHHHHHHhhhccC-------CccceEEEecCC
Confidence 344445555665567754 57999999988776 331 156667788875
No 147
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.69 E-value=42 Score=28.92 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=38.3
Q ss_pred EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCC
Q 033467 23 RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 23 ~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (118)
+-+-.-|=.+|...|+..+. ++ -+.+|.|-+||+|.-.+||.+-|++.+
T Consensus 55 k~sL~i~Gselqa~iakklg-----i~--enhvKci~~~Kils~~ktlaeQglk~n 103 (568)
T KOG2561|consen 55 KCSLHITGSELQALIAKKLG-----IK--ENHVKCIINGKILSCRKTLAEQGLKIN 103 (568)
T ss_pred hcccccccHHHHHHHHHHcC-----Cc--hhhhheeeccceeecccchhhhhhhhh
Confidence 33444456789999999843 22 669999999999999999999888755
No 148
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=29.32 E-value=1.7e+02 Score=22.79 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=36.4
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCC
Q 033467 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66 (118)
Q Consensus 3 ~~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D 66 (118)
+++.|+|-|+..||. +..+-++=..-|.-+|..|-.+-..+ + ...|-|-|.-++-++
T Consensus 24 ~~d~itlef~~~DGt-lit~~~Df~~~v~i~kalilge~e~g---q---s~yq~~cf~~~~~~~ 80 (240)
T PF14941_consen 24 EEDTITLEFQRSDGT-LITQLADFKQEVQIFKALILGEEERG---Q---SQYQALCFVTKLQKN 80 (240)
T ss_pred CCceEEEEEEcCCCc-EEeeehhhhhHHHHHHHHHcChhhhc---c---CcceeEEEEEeeccC
Confidence 368899999999994 44666666667778887776552211 1 455666665554433
No 149
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=29.26 E-value=1.4e+02 Score=18.36 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=36.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccc
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVG 71 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~ 71 (118)
.+++-+++|+.. .+.+-|+.||.++=+++-+. +. ++.-.+++.-..+.|+.+...+
T Consensus 2 ~~~v~LP~~q~t-~V~vrpg~ti~d~L~~~~~kr~L~-------~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 2 TCRVHLPNGQRT-VVQVRPGMTIRDALSKACKKRGLN-------PECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp EEEEEETTTEEE-EEEE-TTSBHHHHHHHHHHTTT---------CCCEEEEEEEEEEEE-TTSBGG
T ss_pred eEEEECCCCCEE-EEEEcCCCCHHHHHHHHHHHcCCC-------HHHEEEEEcCCCccccCCCcee
Confidence 367888999554 69999999999988888877 33 2234444444666776665544
No 150
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=27.04 E-value=1.1e+02 Score=20.04 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=26.0
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033467 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (118)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p 42 (118)
+++..-+.++....++++.|-..|.+++.+-++
T Consensus 2 ~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~ 34 (83)
T cd06404 2 RVKAAYNGDIMITSIDPSISLEELCNEVRDMCR 34 (83)
T ss_pred eEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhC
Confidence 455543337788899999999999999999855
No 151
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=26.94 E-value=1.5e+02 Score=17.76 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=33.9
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+| .++++++..|+.+|=+.+ .++ ...+-+.+.|.++.-+.- +.+ +++||
T Consensus 5 vNG---~~~~~~~~~tl~~ll~~l--~~~---------~~~vav~~N~~iv~r~~~-~~~-L~~gD 54 (65)
T PRK05863 5 VNE---EQVEVDEQTTVAALLDSL--GFP---------EKGIAVAVDWSVLPRSDW-ATK-LRDGA 54 (65)
T ss_pred ECC---EEEEcCCCCcHHHHHHHc--CCC---------CCcEEEEECCcCcChhHh-hhh-cCCCC
Confidence 466 357888888888775543 244 788889999998854433 234 78885
No 152
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=26.48 E-value=1.7e+02 Score=18.25 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=24.2
Q ss_pred EEEEeCC---CCeeeeEEeCCcchHHHHHHHHHhh
Q 033467 9 IKFRLYD---GSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 9 l~~~~~~---g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
||+-..+ + ....+.+++++|+.+|=+.+.++
T Consensus 5 lrV~~~~~~~~-~~kti~v~~~tTa~~Vi~~~l~k 38 (90)
T smart00314 5 LRVYVDDLPGG-TYKTLRVSSRTTARDVIQQLLEK 38 (90)
T ss_pred EEEecccCCCC-cEEEEEECCCCCHHHHHHHHHHH
Confidence 4444444 5 45689999999999999999888
No 153
>PRK04966 hypothetical protein; Provisional
Probab=26.15 E-value=18 Score=23.08 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=24.6
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033467 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
|.+.+|++.+..+.+-...|.++|+.+..-
T Consensus 20 fv~ReGTdyG~~E~sl~~kv~qv~~qL~~G 49 (72)
T PRK04966 20 FVLREGTDYGEHERSLEQKVADVKRQLQSG 49 (72)
T ss_pred HHhccCccCCcccccHHHHHHHHHHHHHcC
Confidence 455688888888899999999999988754
No 154
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=26.03 E-value=1.5e+02 Score=20.10 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=25.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033467 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p 42 (118)
.++|...+| .+..++|..-.+-.++++++..++.
T Consensus 2 vi~~I~~dG-~tk~VNV~~c~~a~eI~~rvLKKfg 35 (105)
T PF14847_consen 2 VIRFILEDG-STKTVNVSGCFNAQEIKRRVLKKFG 35 (105)
T ss_dssp EEEEEETTT-EEEEEE--S--HHHHHHHHHHHHHT
T ss_pred EEEEECCCC-cEEEEEECCCCCHHHHHHHHHHHcC
Confidence 367888899 5668999999999999999999843
No 155
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=25.99 E-value=1.2e+02 Score=22.27 Aligned_cols=29 Identities=28% Similarity=0.222 Sum_probs=24.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHH
Q 033467 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLK 34 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK 34 (118)
+.|+|.|...+|..+ .+.....+||.++-
T Consensus 42 e~i~Itfv~~dG~~~-~i~g~vGdtlLd~a 70 (159)
T KOG3309|consen 42 EDIKITFVDPDGEEI-KIKGKVGDTLLDAA 70 (159)
T ss_pred ceEEEEEECCCCCEE-EeeeecchHHHHHH
Confidence 569999999999776 68888888988864
No 156
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=25.76 E-value=1.7e+02 Score=19.71 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=33.1
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccc
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (118)
.+-++.+.||+++...|..++.-+ +-..+=|+.++..+..+.||++.
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~------~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLS------PEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--------TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEEcCCCchhhHHHHhhhhhcCC------CCceEEEEEcCcccchhhHHHHH
Confidence 367899999999999999996410 13445666666555778888863
No 157
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=24.31 E-value=1.1e+02 Score=25.07 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=38.4
Q ss_pred EEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEEecCeecCCCCcccccC
Q 033467 22 FRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK 74 (118)
Q Consensus 22 ~~v~~~~tV~~LK~~I~~~-~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 74 (118)
+..+..+||.+||..+..+ |-. ....++-++|.+..|.+..||.+.-
T Consensus 168 vrcsa~~Tv~hlkkfl~~k~~~~------~~~~~idi~~~d~~l~~~~TLk~i~ 215 (331)
T KOG2660|consen 168 LRCSAAATVNHLKKFLRKKMDNL------SNKSEIDILCEEELLGDYYTLKDIA 215 (331)
T ss_pred EeccHHHHHHHHHHHHHHHhccc------cchhhheeecCCccccchhhhhhhh
Confidence 5678889999999999988 410 2378889999999999999999643
No 158
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=23.84 E-value=74 Score=25.50 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=24.8
Q ss_pred EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe
Q 033467 23 RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (118)
Q Consensus 23 ~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk 62 (118)
.+++++|.+.+|..|+.. .+++.|-|.-|
T Consensus 301 vL~~~mtLaTVr~~~WK~-----------~~di~L~YR~k 329 (331)
T PF11816_consen 301 VLPPDMTLATVRTFIWKS-----------SGDIVLHYRRK 329 (331)
T ss_pred EcCCcCCHHHHHHhhccC-----------CCeEEEEEEec
Confidence 578999999999999987 78888888654
No 159
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=22.90 E-value=2.5e+02 Score=21.49 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=32.5
Q ss_pred ceEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE
Q 033467 5 ELIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (118)
Q Consensus 5 ~~i~l~~~~~~g--~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI 58 (118)
+.+.|+|+-... .....++++..+|-.+|-++|++.+- .+|+.+||.
T Consensus 175 nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~-------~dP~~lr~~ 223 (249)
T PF12436_consen 175 NRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLN-------VDPEHLRFF 223 (249)
T ss_dssp HEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHT-------S-GGGEEEE
T ss_pred CeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHC-------CChHHEEEE
Confidence 467888887322 23457999999999999999999954 238888884
No 160
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=22.59 E-value=1.6e+02 Score=16.48 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=25.0
Q ss_pred eCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecC
Q 033467 13 LYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE 65 (118)
Q Consensus 13 ~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~ 65 (118)
+.+|. .++++..+|+.++-+.+...++ ........+|+..+
T Consensus 5 ~~~g~---~~~~~~~~t~~~~~~~~~~~~~---------~~~va~~vng~~vd 45 (60)
T cd01668 5 TPKGE---IIELPAGATVLDFAYAIHTEIG---------NRCVGAKVNGKLVP 45 (60)
T ss_pred CCCCC---EEEcCCCCCHHHHHHHHChHhh---------hheEEEEECCEECC
Confidence 35663 4688999999997665543332 23344446777654
No 161
>PF12039 DUF3525: Protein of unknown function (DUF3525); InterPro: IPR021912 This family of proteins is functionally uncharacterised. This protein is found in viruses. Proteins in this family are about 360 amino acids in length.
Probab=22.54 E-value=96 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=20.0
Q ss_pred eeEEEecCeecC-CCCccccc--------CCCCCCCCCceEEEEEE
Q 033467 54 EIKLISSGKILE-NNKTVGQC--------KIPYGEVPGGVIIMHVV 90 (118)
Q Consensus 54 ~qrLI~~Gk~L~-D~~tL~~~--------~i~~g~~~~~~~t~hlv 90 (118)
.--+||-||+.+ |..++.+. -+..| .++|||
T Consensus 26 nsmivyeg~fv~~~~tsvg~~fkltks~rp~~~g------~~~hlv 65 (453)
T PF12039_consen 26 NSMIVYEGRFVNQDATSVGDPFKLTKSRRPLKAG------HTVHLV 65 (453)
T ss_pred CceEEEeeeecCCCccccCChhhcccccccCCCC------ceEEec
Confidence 345789999995 45555542 13444 679987
No 162
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=22.27 E-value=40 Score=24.05 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=13.0
Q ss_pred cccCCCCCCCceEEee
Q 033467 102 KKIDDSPRKIVCSCSI 117 (118)
Q Consensus 102 k~~~~k~~~~~c~c~i 117 (118)
+...++.....|||++
T Consensus 26 r~iRRRRIDL~CGCSy 41 (134)
T PF01440_consen 26 RAIRRRRIDLPCGCSY 41 (134)
T ss_pred ccccCCccccCCCCEE
Confidence 4566777899999997
No 163
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=21.27 E-value=2.5e+02 Score=18.33 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=19.2
Q ss_pred eeeeEEeC-----CcchHHHHHHHHHhhCC
Q 033467 18 DIGPFRYS-----SASTVDMLKQRIVSDWP 42 (118)
Q Consensus 18 ~~~~~~v~-----~~~tV~~LK~~I~~~~p 42 (118)
++.-|.++ ++.+..+|+++|++.+.
T Consensus 10 ~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~ 39 (91)
T cd06398 10 TLRRFTFPVAENQLDLNMDGLREKVEELFS 39 (91)
T ss_pred EEEEEEeccccccCCCCHHHHHHHHHHHhC
Confidence 44456666 46899999999999965
No 164
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=21.18 E-value=1.5e+02 Score=15.83 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=19.4
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033467 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
+.+.+| ..+++...+|+.++-..+...
T Consensus 3 ~~~~~~---~~~~~~~g~t~~~~~~~~~~~ 29 (60)
T cd01616 3 IFTPDG---SAVELPKGATAMDFALKIHTD 29 (60)
T ss_pred EECCCC---CEEEcCCCCCHHHHHHHHHHH
Confidence 455666 246788899999988777654
No 165
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=20.84 E-value=36 Score=24.65 Aligned_cols=12 Identities=42% Similarity=0.421 Sum_probs=8.9
Q ss_pred CCceeEEEecCe
Q 033467 51 AVTEIKLISSGK 62 (118)
Q Consensus 51 ~~~~qrLI~~Gk 62 (118)
.+.-||||++|-
T Consensus 82 ~ptgQRlIvsGG 93 (160)
T PF12219_consen 82 NPTGQRLIVSGG 93 (160)
T ss_dssp -GGG-EEEEESS
T ss_pred CCcccEEEEeCC
Confidence 589999999885
No 166
>PRK07440 hypothetical protein; Provisional
Probab=20.40 E-value=2.2e+02 Score=17.41 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=30.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033467 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+.+++...||.+|=+.+. ++ +..+-+-++|.++.-+. -.+.-+.+||
T Consensus 13 ~~~~~~~~tl~~lL~~l~--~~---------~~~vav~~N~~iv~r~~-w~~~~L~~gD 59 (70)
T PRK07440 13 TRTCSSGTSLPDLLQQLG--FN---------PRLVAVEYNGEILHRQF-WEQTQVQPGD 59 (70)
T ss_pred EEEcCCCCCHHHHHHHcC--CC---------CCeEEEEECCEEeCHHH-cCceecCCCC
Confidence 578888899888765432 33 67778888998885221 1234466675
No 167
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=20.00 E-value=1e+02 Score=20.70 Aligned_cols=25 Identities=8% Similarity=0.361 Sum_probs=20.9
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhh
Q 033467 16 GSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 16 g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
..++..+.+.++.+..++++++.+.
T Consensus 27 ~~~i~~i~~~~~~~~~~~~~~l~~~ 51 (116)
T TIGR00824 27 QNNVGAVPFVPGENAETLQEKYNAA 51 (116)
T ss_pred cCCeEEEEcCCCcCHHHHHHHHHHH
Confidence 3457778999999999999999877
Done!