BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033468
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q945M1|NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1
Length = 117
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 101/117 (86%), Gaps = 1/117 (0%)
Query: 1 MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVT 60
MSG +STAAY ARRAAQKERV+ILYRRALKDTLNWAVHRH+FY+DA DLR +F N+ V
Sbjct: 1 MSG-VSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVE 59
Query: 61 DLDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAYDFGKEDN 117
D+D ID++I EA YNKWRHPDPYIVPWAPGGSKFCRNPTPP GIEI Y++G EDN
Sbjct: 60 DVDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDN 116
>sp|Q02369|NDUB9_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Bos taurus GN=NDUFB9 PE=1 SV=2
Length = 179
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 5 ISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDA 64
+S+ AY+ +++V LY+RAL+ +W +HR + A LR RF+ +K+ D+
Sbjct: 4 LSSGAYLT----HQQKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKDMVK 59
Query: 65 IDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCR 98
+++ EAE + +HP PYI P +PGG+ + R
Sbjct: 60 ATQLLREAEEEFWHGQHPQPYIFPESPGGTSYER 93
>sp|Q9CQJ8|NDUB9_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Mus musculus GN=Ndufb9 PE=1 SV=3
Length = 179
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
+++V LY+RAL+ +W +HR + A +R RFE +K+ D+ +++ EAE
Sbjct: 11 THQQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEE 70
Query: 76 YNKWRHPDPYIVPWAPGGSKFCR 98
+ + +HP PYI P +PGG+ F R
Sbjct: 71 FWQNQHPQPYIFPDSPGGTSFER 93
>sp|Q0MQE8|NDUB9_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Pongo abelii GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 5 ISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDA 64
+++ AY+ R ++V LY+RAL+ +W V R + A +R RFE +K+ D+
Sbjct: 4 LASGAYLTHR----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMVR 59
Query: 65 IDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCR 98
+++ EAE + +HP PYI P +PGG+ + R
Sbjct: 60 ATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93
>sp|Q0MQE9|NDUB9_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 12 ARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDE 71
R +++V LY+RAL+ +W V R + A +R RFE +K+ D+ +++ E
Sbjct: 7 GRYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKE 66
Query: 72 AEATYNKWRHPDPYIVPWAPGGSKFCR 98
AE + +HP PYI P +PGG+ + R
Sbjct: 67 AEEEFWYRQHPQPYIFPDSPGGTSYER 93
>sp|Q54NR3|NDUB9_DICDI NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Dictyostelium discoideum GN=ndufb9 PE=3 SV=1
Length = 106
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
+ ++V LYR+A+K +++ +F +A DLR +A K+ T+ AI +M+ + E
Sbjct: 3 SHSQKVVRLYRKAIKSIRDYSEDYDMFLLNAGDLRASLKAGKNETNPFAIQQMVKQLEDF 62
Query: 76 YNKWRHPDPYIVPWAPGGSKFCRNPTP 102
+ W HPDPYI G+K+ RN P
Sbjct: 63 NSYWEHPDPYIPCDGINGTKWQRNTAP 89
>sp|Q9Y6M9|NDUB9_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Homo sapiens GN=NDUFB9 PE=1 SV=3
Length = 179
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
+++V LY+RAL+ +W V R + A +R RFE +K+ D+ +++ EAE
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 76 YNKWRHPDPYIVPWAPGGSKFCR 98
+ +HP PYI P +PGG+ + R
Sbjct: 71 FWYRQHPQPYIFPDSPGGTSYER 93
>sp|Q0MQF0|NDUB9_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
+++V LY+RAL+ +W V R + A +R RFE +K+ D+ +++ EAE
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 76 YNKWRHPDPYIVPWAPGGSKFCR 98
+ +HP PYI P +PGG+ + R
Sbjct: 71 FWYRQHPQPYIFPDSPGGTSYER 93
>sp|B4U759|RL6_HYDS0 50S ribosomal protein L6 OS=Hydrogenobaculum sp. (strain Y04AAS1)
GN=rplF PE=3 SV=1
Length = 181
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 19 ERVQILYRRALKDT---LNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDR-MIDEAEA 74
E V + Y+ A+K LN ++YK ++L + NK + ID+ ++ + A
Sbjct: 88 EVVGLGYKAAMKGQELELNLGYSHPIYYKPPAGIKLEVKENK--ITVSGIDKQLVGQVAA 145
Query: 75 TYNKWRHPDPY 85
K+R PDPY
Sbjct: 146 EIIKFRKPDPY 156
>sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana
GN=RPL6 PE=1 SV=1
Length = 223
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 32 TLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPY 85
LN + + D L+++ E N +T I + AT KWR P+PY
Sbjct: 147 VLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPY 200
>sp|P98140|FA12_BOVIN Coagulation factor XII OS=Bos taurus GN=F12 PE=1 SV=2
Length = 612
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 72 AEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAYDFGKEDND 118
+EATY W ++ W G FCR TPP G + DND
Sbjct: 245 SEATY--WNVTAEQVLNWGLGDHAFCRASTPPRG------YRNPDND 283
>sp|O52347|RL6_MYCGA 50S ribosomal protein L6 OS=Mycoplasma gallisepticum (strain R(low
/ passage 15 / clone 2)) GN=rplF PE=3 SV=2
Length = 183
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 21 VQILYRRALKD-TLNWAV-HRHLFYKDA-DDLRLRFEANKHVTDLDAIDRM-IDEAEATY 76
V + YR +LKD LN + + H D DL++ + N +T + ID+ + E
Sbjct: 92 VGVGYRASLKDNVLNLQLGYSHPINLDIPKDLKVTVDKNTEIT-VSGIDKQKVGEFAIQI 150
Query: 77 NKWRHPDPY 85
KWR P+PY
Sbjct: 151 RKWRMPEPY 159
>sp|B5FYC7|LYRM1_TAEGU LYR motif-containing protein 1 OS=Taeniopygia guttata GN=LYRM1
PE=2 SV=1
Length = 122
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 16 AQKERVQILYRRALKDTLNWA-----VHRHLFYKD--ADDLRLRFEANKHVTDLDAIDRM 68
A ++ V LYR+ + NW + + K+ ++ R F NK+VTD + I +
Sbjct: 4 ATRQEVLGLYRKVFRIAKNWQSASGQIEETMREKEYIRNEARTLFRKNKNVTDPNLIKQC 63
Query: 69 IDEAEATYNKWRH---PDPYIVPWAPGG 93
I+E EA H P P + P G
Sbjct: 64 IEECEARIEIGLHYNIPYPRPIHLPPMG 91
>sp|Q80KJ7|NS1AB_MASV1 Non-structural polyprotein 1AB OS=Mink astrovirus 1 GN=ORF1 PE=3 SV=2
Length = 1381
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 63 DAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAYDFGK 114
D +DR++ + + W P+ IV P G FC P+ + + D K
Sbjct: 1252 DYVDRVVHMYKDVFGMWVKPEKVIVSDTPVGLSFCGFTVGPDLMPVPTDCDK 1303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,684,328
Number of Sequences: 539616
Number of extensions: 1920471
Number of successful extensions: 4726
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4714
Number of HSP's gapped (non-prelim): 23
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)