Query 033468
Match_columns 118
No_of_seqs 101 out of 483
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:37:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3466 NADH:ubiquinone oxidor 100.0 2E-33 4.4E-38 205.5 9.5 110 6-116 1-119 (157)
2 PF05347 Complex1_LYR: Complex 99.6 2.8E-15 6.1E-20 93.4 6.5 57 19-78 1-59 (59)
3 KOG3801 Uncharacterized conser 99.6 1.2E-14 2.6E-19 99.7 7.3 64 15-80 3-67 (94)
4 PF13232 Complex1_LYR_1: Compl 99.6 1.4E-14 3.1E-19 91.5 6.7 58 19-79 1-60 (61)
5 KOG4620 Uncharacterized conser 99.4 2.1E-12 4.5E-17 85.7 7.4 68 13-83 3-73 (80)
6 KOG3426 NADH:ubiquinone oxidor 99.3 1.5E-11 3.2E-16 87.7 6.3 74 11-84 16-95 (124)
7 PF13233 Complex1_LYR_2: Compl 97.5 0.00057 1.2E-08 46.7 6.6 56 21-76 1-66 (104)
8 KOG4100 Uncharacterized conser 95.5 0.046 1E-06 39.4 5.7 60 15-78 6-66 (125)
9 PF04716 ETC_C1_NDUFA5: ETC co 91.0 1.3 2.8E-05 27.8 5.9 52 18-69 4-55 (57)
10 COG5319 Uncharacterized protei 48.2 71 0.0015 23.6 5.6 59 16-74 68-130 (142)
11 PF10153 DUF2361: Uncharacteri 38.6 1.4E+02 0.0031 21.1 5.9 38 49-86 71-111 (114)
12 PF06676 DUF1178: Protein of u 36.7 59 0.0013 24.2 3.8 59 17-75 75-137 (148)
13 PF09164 VitD-bind_III: Vitami 33.9 1.1E+02 0.0024 20.0 4.3 31 41-71 10-40 (68)
14 PF07438 DUF1514: Protein of u 33.6 1.4E+02 0.003 19.5 4.8 37 41-77 29-65 (66)
15 PF12926 MOZART2: Mitotic-spin 31.6 1.4E+02 0.0031 20.4 4.7 63 1-70 1-67 (88)
16 PF04695 Pex14_N: Peroxisomal 30.9 52 0.0011 23.5 2.7 28 48-76 24-51 (136)
17 KOG0810 SNARE protein Syntaxin 28.8 3.1E+02 0.0067 22.5 7.1 60 18-77 122-183 (297)
18 KOG0489 Transcription factor z 26.7 61 0.0013 25.7 2.6 36 44-79 169-206 (261)
19 KOG4263 Putative receptor CCR1 25.9 2.1E+02 0.0045 23.6 5.5 53 14-69 50-104 (299)
20 PRK04387 hypothetical protein; 25.6 1.3E+02 0.0028 20.6 3.7 51 16-74 34-84 (90)
21 PF14420 Clr5: Clr5 domain 25.0 76 0.0016 19.2 2.3 21 15-35 6-29 (54)
22 PF10421 OAS1_C: 2'-5'-oligoad 24.2 1.4E+02 0.003 23.2 4.0 50 23-77 7-56 (190)
23 PF09951 DUF2185: Protein of u 24.2 21 0.00045 24.2 -0.4 25 78-102 55-81 (89)
24 PF13743 Thioredoxin_5: Thiore 20.4 2.3E+02 0.0051 20.7 4.6 48 19-72 65-113 (176)
25 PHA02571 a-gt.4 hypothetical p 20.2 3.3E+02 0.0072 19.4 7.8 60 15-79 40-99 (109)
No 1
>KOG3466 consensus NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Energy production and conversion]
Probab=100.00 E-value=2e-33 Score=205.46 Aligned_cols=110 Identities=44% Similarity=0.761 Sum_probs=102.4
Q ss_pred ccHHHhhhhHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhhcCCCC
Q 033468 6 STAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPY 85 (118)
Q Consensus 6 ~~~~~~~~~~~~r~rVL~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~~~Hp~Py 85 (118)
|+|+++++.++|+++|++|||++||...+|++.|+.+|+.+..||++|++|++ +|..++..||++|+++|+++.||+||
T Consensus 1 s~a~~f~~~lshkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~rHpqP~ 79 (157)
T KOG3466|consen 1 STAAYFARRLSHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWRHPQPY 79 (157)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCCCCcccccCCCCCCC---------eeecccCCCCC
Q 033468 86 IVPWAPGGSKFCRNPTPPEG---------IEIAYDFGKED 116 (118)
Q Consensus 86 ~~p~~pgG~~~~Rn~~~p~~---------~~~~~~~~~~~ 116 (118)
+||++||||+|+|+..|||. .+.+++|+..+
T Consensus 80 ifp~spGGssy~R~~~~Pdw~lD~Whpaeka~yp~Yfakr 119 (157)
T KOG3466|consen 80 IFPDSPGGSSYEREPCPPDWCLDDWHPAEKAQYPDYFAKR 119 (157)
T ss_pred ccCCCCCCCccccCCCChHHhhcccChhhhHhhhHHhhhh
Confidence 99999999999999999654 55566666543
No 2
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=99.60 E-value=2.8e-15 Score=93.42 Aligned_cols=57 Identities=25% Similarity=0.483 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhH
Q 033468 19 ERVQILYRRALKDTLNWAVH--RHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNK 78 (118)
Q Consensus 19 ~rVL~LYR~~LR~~~~~~~~--r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~ 78 (118)
++||+|||++||.++.|+.. +..+ ...||++|++|++++||..|+.|+..|+++|++
T Consensus 1 q~vl~LYR~lLR~~~~~~~~~~r~~~---~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~ 59 (59)
T PF05347_consen 1 QRVLSLYRQLLRAARSFPDDSEREYI---RAEIRQEFRKNRNETDPEKIEELLKKGEEELEM 59 (59)
T ss_pred ChHHHHHHHHHHHHHHcCCcchHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999988764 3344 368999999999999999999999999999974
No 3
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=99.74 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=56.2
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhh
Q 033468 15 AAQKERVQILYRRALKDTLNWAVHRHLFY-KDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR 80 (118)
Q Consensus 15 ~~~r~rVL~LYR~~LR~~~~~~~~r~~~r-~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~~~ 80 (118)
..++++|++|||.+||+++.|+.+ +|| +..+++|+.|++|++++||.+|+.|+++|+++|+.+.
T Consensus 3 ~~sr~qvlsLyr~~lr~s~qfp~Y--NyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~Levik 67 (94)
T KOG3801|consen 3 MVSRRQVLSLYRNLLRESKQFPQY--NYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIK 67 (94)
T ss_pred cccHHHHHHHHHHHHHHHhhCCcc--cHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999765 344 3347999999999999999999999999999998765
No 4
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=99.55 E-value=1.4e-14 Score=91.49 Aligned_cols=58 Identities=29% Similarity=0.496 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHh
Q 033468 19 ERVQILYRRALKDTLNWAVH--RHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKW 79 (118)
Q Consensus 19 ~rVL~LYR~~LR~~~~~~~~--r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~~ 79 (118)
++||+|||++||++..|+.+ +..+ ..+||++|++|++++||++|+.++++|+++|..+
T Consensus 1 ~~vL~LYR~lLR~~~~~~~~~~r~~~---~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l 60 (61)
T PF13232_consen 1 QQVLSLYRQLLREASKFPDYNFRSYF---RRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELL 60 (61)
T ss_pred ChHHHHHHHHHHHhhhcCCcchHHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999753 4333 3689999999999999999999999999999875
No 5
>KOG4620 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.1e-12 Score=85.73 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=59.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHhHhhcCC
Q 033468 13 RRAAQKERVQILYRRALKDTLNWAV-HRHLFYKDADDLRLRFEANKHV--TDLDAIDRMIDEAEATYNKWRHPD 83 (118)
Q Consensus 13 ~~~~~r~rVL~LYR~~LR~~~~~~~-~r~~~r~~a~~iR~~Fe~nk~v--tDp~~I~~Ll~~G~~eL~~~~Hp~ 83 (118)
+.+..++|||+|||.+||+++..+. ....|. ..|+++|++|+++ +|.-.|++|+..|+++++..+||+
T Consensus 3 rlSgLQrqVlhlYR~~lraa~~Kp~~~~~~~m---~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~pe 73 (80)
T KOG4620|consen 3 RLSGLQRQVLHLYRDLLRAARGKPGAEARRWM---AFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSPE 73 (80)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCchHHHHHH---HHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCcc
Confidence 5678899999999999999987755 233455 4699999999999 799999999999999999999985
No 6
>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]
Probab=99.25 E-value=1.5e-11 Score=87.73 Aligned_cols=74 Identities=24% Similarity=0.256 Sum_probs=58.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhh-cC-CC
Q 033468 11 VARRAAQKERVQILYRRALKDTLNWAVHRHL----FYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR-HP-DP 84 (118)
Q Consensus 11 ~~~~~~~r~rVL~LYR~~LR~~~~~~~~r~~----~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~~~-Hp-~P 84 (118)
++-....|++||.|||++.|++..+..+.+. ......+||++|.+|.|||||++|+.|+-+|+++|+++. |+ +|
T Consensus 16 S~n~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv~~~kqr 95 (124)
T KOG3426|consen 16 SANLTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIVDHWKQR 95 (124)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHHHHHhCc
Confidence 3445678999999999999999755433211 112236899999999999999999999999999998876 54 44
No 7
>PF13233 Complex1_LYR_2: Complex1_LYR-like
Probab=97.45 E-value=0.00057 Score=46.70 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHH------HHHHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 033468 21 VQILYRRALKDTLNWAVHRHL------FYKDADDL----RLRFEANKHVTDLDAIDRMIDEAEATY 76 (118)
Q Consensus 21 VL~LYR~~LR~~~~~~~~r~~------~r~~a~~i----R~~Fe~nk~vtDp~~I~~Ll~~G~~eL 76 (118)
||+|||.+||+.+.+...... ......+| +++|+.+++++|+..+..-+.+++.-+
T Consensus 1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~ 66 (104)
T PF13233_consen 1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYA 66 (104)
T ss_pred ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 799999999999987543210 01122467 999999999997776666666655443
No 8
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.046 Score=39.42 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=43.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhH
Q 033468 15 AAQKERVQILYRRALKDTLNWAVH-RHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNK 78 (118)
Q Consensus 15 ~~~r~rVL~LYR~~LR~~~~~~~~-r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~ 78 (118)
+.|-.+|--|||+.||.=+--+.. |..=- ..+|++|+.||++ +|..+.-.+.+.+.-.-.
T Consensus 6 ~~~p~rvrlLYkriLrlHr~lp~~~R~lGD---~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~ 66 (125)
T KOG4100|consen 6 LLHPPRVRLLYKRILRLHRGLPAELRALGD---QYVKDEFRRHKTV-NPLEAQGFLTEWERYAVA 66 (125)
T ss_pred cCCcchHHHHHHHHHHHHccCChHHHHHHH---HHHHHHHHHhccC-ChHHHHHHHHHHHHHHHH
Confidence 344567777999999998765543 22211 3689999999999 888888888776654433
No 9
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=90.98 E-value=1.3 Score=27.84 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 033468 18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMI 69 (118)
Q Consensus 18 r~rVL~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll 69 (118)
|.....||.+.|+.....+.+-.+..+.-..++.++.--+...|.++|+..|
T Consensus 4 r~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i 55 (57)
T PF04716_consen 4 REALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI 55 (57)
T ss_pred HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence 4678899999999999886553332233357888888888899999998765
No 10
>COG5319 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.17 E-value=71 Score=23.62 Aligned_cols=59 Identities=8% Similarity=0.122 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHH
Q 033468 16 AQKERVQILYRRALKDTLNWAVHR-HLFYKDADDLRLRFEANKHV---TDLDAIDRMIDEAEA 74 (118)
Q Consensus 16 ~~r~rVL~LYR~~LR~~~~~~~~r-~~~r~~a~~iR~~Fe~nk~v---tDp~~I~~Ll~~G~~ 74 (118)
..+++++.-||.+.|..+....+- +.|-..|++|.-.=-.-+++ ..++++..|+++|-+
T Consensus 68 ~a~ke~~a~~~~~~r~vreNad~VGekFaeEARkiHygea~eRGI~GeaS~eEa~aL~EdGve 130 (142)
T COG5319 68 EAQKEALAKMREAVRHVRENADYVGEKFAEEARKIHYGEADERGIYGEASHEEAKALAEDGVE 130 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCCccccccCcCCHHHHHHHHHcCce
Confidence 367789999999999998664442 34555566666443344555 567788888888754
No 11
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=38.64 E-value=1.4e+02 Score=21.15 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhhcC---CCCc
Q 033468 49 LRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHP---DPYI 86 (118)
Q Consensus 49 iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~~~Hp---~Py~ 86 (118)
++.+.+....-.+.++++.-+..++.+|..+.|+ .+||
T Consensus 71 l~k~l~~~~~~~~~~~l~~~l~~~~~DL~Yv~~fPk~eKYI 111 (114)
T PF10153_consen 71 LEKKLEEAEDKKEIKELEKELHKLEVDLNYVIYFPKTEKYI 111 (114)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCCCCCCcc
Confidence 3444444443446778888899999999998876 5565
No 12
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=36.71 E-value=59 Score=24.17 Aligned_cols=59 Identities=8% Similarity=0.146 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHH
Q 033468 17 QKERVQILYRRALKDTLNWAVHR-HLFYKDADDLRLRFEANKHV---TDLDAIDRMIDEAEAT 75 (118)
Q Consensus 17 ~r~rVL~LYR~~LR~~~~~~~~r-~~~r~~a~~iR~~Fe~nk~v---tDp~~I~~Ll~~G~~e 75 (118)
....+..+++++.+.+.....+- +.|-..|++|.-.=.+.|.| ..+++.+.|+++|-.-
T Consensus 75 ~~~~~~~~l~~~~~~v~~n~e~VG~~FAeEAR~iHyGea~~R~I~G~at~eE~~~L~eEGI~v 137 (148)
T PF06676_consen 75 PPAELEAALRKLRRHVEKNSEDVGDRFAEEARKIHYGEAEERGIYGEATPEEAKELIEEGIEV 137 (148)
T ss_pred cHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHcCCCccccCcCcCCHHHHHHHHHcCCeE
Confidence 45677888888888886432221 35666677787655556666 6789999999998653
No 13
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=33.94 E-value=1.1e+02 Score=19.98 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 033468 41 LFYKDADDLRLRFEANKHVTDLDAIDRMIDE 71 (118)
Q Consensus 41 ~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~ 71 (118)
.|..+..+++++|++.---..+.+++.|+++
T Consensus 10 tFtEyKKrL~e~l~~k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 10 TFTEYKKRLAERLRAKLPDATPTELKELVEK 40 (68)
T ss_dssp -HHHHHHHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3555567899999998888889999999876
No 14
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=33.56 E-value=1.4e+02 Score=19.47 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 033468 41 LFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77 (118)
Q Consensus 41 ~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~ 77 (118)
.+++.-..+..+|-++++..+.+..+.-++...+++.
T Consensus 29 alkY~N~yL~~~~v~~~g~~gl~~~~~e~~r~~~~~k 65 (66)
T PF07438_consen 29 ALKYMNDYLFDQFVRDNGYEGLEEYEIEIERIKKDFK 65 (66)
T ss_pred HHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhc
Confidence 4555556789999999999999988888888777654
No 15
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.64 E-value=1.4e+02 Score=20.42 Aligned_cols=63 Identities=25% Similarity=0.222 Sum_probs=37.9
Q ss_pred CC-CccccHHHhhhhHhHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 033468 1 MS-GAISTAAYVARRAAQKERVQILYRRALKDTLNW---AVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMID 70 (118)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~r~rVL~LYR~~LR~~~~~---~~~r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~ 70 (118)
|| ++-+|.+.+.+....|++||+-.-.-|-+.-.. ..+.+.||.....+| -+|. |..|-.+|+
T Consensus 1 m~~~~~~~~~~~~k~~~~rk~~Ls~eE~EL~ELa~~AGv~~dp~VFriildLL~------~nVs-P~AI~qmLK 67 (88)
T PF12926_consen 1 MSAAPGSPTAQVYKYSLRRKKVLSAEEVELYELAQLAGVPMDPEVFRIILDLLR------LNVS-PDAIFQMLK 67 (88)
T ss_pred CCCCCCCChHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCcChHHHHHHHHHHH------cCCC-HHHHHHHHH
Confidence 56 666777889999999999998666444333222 235677773322222 2233 666655554
No 16
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=30.89 E-value=52 Score=23.55 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 033468 48 DLRLRFEANKHVTDLDAIDRMIDEAEATY 76 (118)
Q Consensus 48 ~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL 76 (118)
.=|.+|-+.|++++ ++|+.+|.++...-
T Consensus 24 ~~k~~FL~sKGLt~-~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 24 EKKIAFLESKGLTE-EEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHCT--H-HHHHHHHHHHT--S
T ss_pred HHHHHHHHcCCCCH-HHHHHHHHhcCCcc
Confidence 34889999999995 55999998876655
No 17
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.77 E-value=3.1e+02 Score=22.54 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 033468 18 KERVQILYRRALKDTLNWAVHRHLFYKD-ADD-LRLRFEANKHVTDLDAIDRMIDEAEATYN 77 (118)
Q Consensus 18 r~rVL~LYR~~LR~~~~~~~~r~~~r~~-a~~-iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~ 77 (118)
|.|.-.|.|.+.....+|..-+..++.. ..+ -|+.|-.++..++-++|+.+++.|.-+.+
T Consensus 122 rtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f 183 (297)
T KOG0810|consen 122 RTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVF 183 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHH
Confidence 3444445588888888886655555532 234 45566666757788889999998765543
No 18
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=26.72 E-value=61 Score=25.72 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHhHh
Q 033468 44 KDADDLRLRFEANKHVTDLD--AIDRMIDEAEATYNKW 79 (118)
Q Consensus 44 ~~a~~iR~~Fe~nk~vtDp~--~I~~Ll~~G~~eL~~~ 79 (118)
+...++-.||.-|+.|+=.+ +|...|.-.|.+++.|
T Consensus 169 ~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIW 206 (261)
T KOG0489|consen 169 YQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIW 206 (261)
T ss_pred hhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHH
Confidence 44568999999999997654 5666666666666543
No 19
>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]
Probab=25.95 E-value=2.1e+02 Score=23.59 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=34.2
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHH
Q 033468 14 RAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDL--DAIDRMI 69 (118)
Q Consensus 14 ~~~~r~rVL~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtDp--~~I~~Ll 69 (118)
++.+==+|+.|||-.+.-++.+..|-..|+. .-|..-+-++.++|. ++.+.|.
T Consensus 50 flg~fPk~~~Lyr~f~~G~~~~faD~K~~~k---ikr~~~~~~~k~~~L~~~ElE~l~ 104 (299)
T KOG4263|consen 50 FLGKFPKVLALYRTFLEGSRWCFADVKMYFK---IKRAVATGQKKLTDLSVEELETLV 104 (299)
T ss_pred HHhhhhHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHhcCccchhhCCHHHHHHHH
Confidence 4445568999999999999876666444442 335555667777653 3444443
No 20
>PRK04387 hypothetical protein; Provisional
Probab=25.62 E-value=1.3e+02 Score=20.65 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 033468 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEA 74 (118)
Q Consensus 16 ~~r~rVL~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~ 74 (118)
-.|..+|.+||+.-....+..... .|=.+|++..+-+--.+++..-+.++.
T Consensus 34 v~re~ll~~Y~~FK~VVpsK~EEK--------ql~reFe~~SGYS~Y~~Vk~ak~~~~~ 84 (90)
T PRK04387 34 VDAEELLDAYRRFKEIVPSKAEEK--------QIDREFEKVSGYSIYRAVQKAKEIEEG 84 (90)
T ss_pred CcHHHHHHHHHHHHHhcCChHHHH--------HHHHHHHHHcCCcHHHHHHHHHhcccc
Confidence 456777888887766666654432 355688888888877777766555443
No 21
>PF14420 Clr5: Clr5 domain
Probab=25.00 E-value=76 Score=19.16 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=12.6
Q ss_pred HhHHHHHHHHHH---HHHHHHhhh
Q 033468 15 AAQKERVQILYR---RALKDTLNW 35 (118)
Q Consensus 15 ~~~r~rVL~LYR---~~LR~~~~~ 35 (118)
.++|..+.+||- ..|..+.+.
T Consensus 6 e~~K~~I~~LY~~e~~tl~~v~~~ 29 (54)
T PF14420_consen 6 EPHKEEIERLYIDENKTLEEVMEI 29 (54)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHH
Confidence 456777888883 445554433
No 22
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=24.16 E-value=1.4e+02 Score=23.16 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 033468 23 ILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77 (118)
Q Consensus 23 ~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~ 77 (118)
..|..++|....-. .+.+|-..+.++...|-+++ |.+++.||.--+.=..
T Consensus 7 ~vY~~Li~~~~~~~-~~gefS~cftelQ~~Fvk~r----P~klK~LIrLVKhWy~ 56 (190)
T PF10421_consen 7 QVYRDLIRECDMSE-KPGEFSACFTELQRNFVKHR----PTKLKNLIRLVKHWYQ 56 (190)
T ss_dssp HHHHHHHHHHHHHT--TTTTGGGGHHHHHHHHHTS-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CCccchHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHH
Confidence 46888888776332 45566666678999999988 7778877775554333
No 23
>PF09951 DUF2185: Protein of unknown function (DUF2185); InterPro: IPR018689 This domain has no known function.
Probab=24.16 E-value=21 Score=24.24 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=16.4
Q ss_pred HhhcCCCCcCC--CCCCCcccccCCCC
Q 033468 78 KWRHPDPYIVP--WAPGGSKFCRNPTP 102 (118)
Q Consensus 78 ~~~Hp~Py~~p--~~pgG~~~~Rn~~~ 102 (118)
.+.+-+|-+.+ .+|-||+|+|+..-
T Consensus 55 ~i~~idp~i~~ll~~p~Gt~~er~e~g 81 (89)
T PF09951_consen 55 TILNIDPSIIPLLDAPYGTAFERDEDG 81 (89)
T ss_pred HHHhhChHHHHHhcCCCCceEEECCCC
Confidence 34444565444 37999999997653
No 24
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=20.41 E-value=2.3e+02 Score=20.72 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHH
Q 033468 19 ERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRF-EANKHVTDLDAIDRMIDEA 72 (118)
Q Consensus 19 ~rVL~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~F-e~nk~vtDp~~I~~Ll~~G 72 (118)
-.++..||++.-.++... +... .+|++.+ .++++.+|.+.+..+.++.
T Consensus 65 y~a~la~kAA~~qg~k~~--~~fL----~~lQ~a~~~~~~~~s~~~~l~~iA~~~ 113 (176)
T PF13743_consen 65 YPACLAYKAAQLQGKKKA--RRFL----RALQEALFLEGKNYSDEELLLEIAEEL 113 (176)
T ss_dssp HHHHHHHHHHHTTT-H----HHHH----HHHHHHHHTS---TTSHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhChhhH--HHHH----HHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 445666776654443322 2222 3566666 8999999988777777653
No 25
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=20.22 E-value=3.3e+02 Score=19.37 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHh
Q 033468 15 AAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKW 79 (118)
Q Consensus 15 ~~~r~rVL~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~~ 79 (118)
-.+++++-+|++++-+.+.+. ..+-|.|...++|.-...- + +.+.|+.|-.-...++..+
T Consensus 40 kKN~rEIkRL~~HAe~al~~~--Nk~~Y~YAI~KLR~i~kQp--~-~de~i~tmW~TSrqqi~di 99 (109)
T PHA02571 40 KKNRREIKRLKKHAEEALFDN--NKEQYVYAIKKLRDIYKQP--Y-TDELIETMWETSRQQILDM 99 (109)
T ss_pred HHhHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHcCC--C-cHHHHHHHHHHHHHHHHHH
Confidence 357888999999988888643 3345677778999888764 4 4566777777777776654
Done!