Query 033468
Match_columns 118
No_of_seqs 101 out of 483
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 03:30:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ke4_A CDC42-interacting prote 36.2 91 0.0031 20.5 5.8 34 45-78 40-73 (98)
2 3ff5_A PEX14P, peroxisomal bio 33.2 30 0.001 20.7 2.4 23 48-71 31-53 (54)
3 2w84_A Peroxisomal membrane pr 32.3 47 0.0016 20.9 3.3 24 48-72 36-59 (70)
4 4b6x_A AVRRPS4, avirulence pro 29.9 58 0.002 21.3 3.5 34 47-80 39-75 (90)
5 1lki_A Leukemia inhibitory fac 28.7 94 0.0032 22.9 4.9 90 1-98 62-158 (180)
6 2g8l_A 287AA long hypothetical 26.4 2.2E+02 0.0076 21.9 7.1 11 25-35 24-34 (299)
7 2ffj_A Conserved hypothetical 25.3 2.3E+02 0.0079 21.7 7.5 6 48-53 72-77 (300)
8 2guz_B Mitochondrial import in 23.4 40 0.0014 20.5 1.7 23 67-96 22-44 (65)
9 3u85_B Histone-lysine N-methyl 19.9 38 0.0013 16.5 0.8 11 85-95 3-13 (21)
10 4fz4_A 0197-18KD, uncharacteri 19.7 1.2E+02 0.004 21.8 3.8 32 62-98 6-37 (154)
No 1
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.18 E-value=91 Score=20.46 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhH
Q 033468 45 DADDLRLRFEANKHVTDLDAIDRMIDEAEATYNK 78 (118)
Q Consensus 45 ~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~ 78 (118)
...++...+.+|-...|+..++..|.+....|..
T Consensus 40 gl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~ 73 (98)
T 2ke4_A 40 ALKKMKDVYEKTPQMGDPASLEPQIAETLSNIER 73 (98)
T ss_dssp HHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHH
Confidence 3358999999999999999887777776665543
No 2
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=33.16 E-value=30 Score=20.71 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHH
Q 033468 48 DLRLRFEANKHVTDLDAIDRMIDE 71 (118)
Q Consensus 48 ~iR~~Fe~nk~vtDp~~I~~Ll~~ 71 (118)
.-|.+|-+.|++|+. +|+.+++.
T Consensus 31 ~~K~~FL~sKGLt~~-EI~~Al~r 53 (54)
T 3ff5_A 31 ATRRAFLKKKGLTDE-EIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHTTCCHH-HHHHHHHH
T ss_pred HHHHHHHHHcCCCHH-HHHHHHHc
Confidence 457899999999964 47777764
No 3
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=32.33 E-value=47 Score=20.91 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHH
Q 033468 48 DLRLRFEANKHVTDLDAIDRMIDEA 72 (118)
Q Consensus 48 ~iR~~Fe~nk~vtDp~~I~~Ll~~G 72 (118)
.-|.+|-+.|++|+ ++|+.+++++
T Consensus 36 ~~K~~FL~sKGLt~-eEI~~Al~ra 59 (70)
T 2w84_A 36 ATRRAFLKKKGLTD-EEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHc
Confidence 35789999999995 5588888875
No 4
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=29.90 E-value=58 Score=21.29 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCHHHH---HHHHHHHHHHHhHhh
Q 033468 47 DDLRLRFEANKHVTDLDAI---DRMIDEAEATYNKWR 80 (118)
Q Consensus 47 ~~iR~~Fe~nk~vtDp~~I---~~Ll~~G~~eL~~~~ 80 (118)
.-++++..+..+..+|..| +.+|+++..+|...+
T Consensus 39 ~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~ 75 (90)
T 4b6x_A 39 NNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQ 75 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHH
Confidence 3578888888888999887 679999999987654
No 5
>1lki_A Leukemia inhibitory factor; cytokine, four helix bundle; 2.00A {Mus musculus} SCOP: a.26.1.1 PDB: 1a7m_A 2q7n_B* 1pvh_B 1emr_A
Probab=28.70 E-value=94 Score=22.90 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=46.4
Q ss_pred CCCccccHHHhhhhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-
Q 033468 1 MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAV---HRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATY- 76 (118)
Q Consensus 1 ~~~~~~~~~~~~~~~~~r~rVL~LYR~~LR~~~~~~~---~r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL- 76 (118)
|++--+|.+..+. +-+.|.++||+.+--.+....+ ++....--+..+..+-.+-. ...+.|+..--=.|
T Consensus 62 p~~~~fP~f~~sg--t~~eRllely~~~~~l~~~L~nVt~dQ~~LnP~a~~Ll~~L~~t~-----~~~rgLlsnv~c~lc 134 (180)
T 1lki_A 62 PNMTDFPSFHGNG--TEKTKLVELYRMVAYLSASLTNITRDQKVLNPTAVSLQVKLNATI-----DVMRGLLSNVLCRLC 134 (180)
T ss_dssp CCCTTSCCCCTTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred CCcccCCCCCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 3455567777765 4577899999987666644322 22111111222222222211 12233444333333
Q ss_pred --hHhhcC-CCCcCCCCCCCccccc
Q 033468 77 --NKWRHP-DPYIVPWAPGGSKFCR 98 (118)
Q Consensus 77 --~~~~Hp-~Py~~p~~pgG~~~~R 98 (118)
..+.|| .|| -|+.||+++|++
T Consensus 135 ~~y~v~~v~v~~-gP~~~~k~~Fqk 158 (180)
T 1lki_A 135 NKYRVGHVDVPP-VPDHSDKEAFQR 158 (180)
T ss_dssp HTTCCCEECCCC-CCCCTTSCHHHH
T ss_pred hhccccCCCCCC-CCCCcchhHHHH
Confidence 245677 677 455788888875
No 6
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Probab=26.36 E-value=2.2e+02 Score=21.87 Aligned_cols=11 Identities=0% Similarity=-0.336 Sum_probs=4.9
Q ss_pred HHHHHHHHhhh
Q 033468 25 YRRALKDTLNW 35 (118)
Q Consensus 25 YR~~LR~~~~~ 35 (118)
.++.++.++..
T Consensus 24 ~~q~~~~~~~~ 34 (299)
T 2g8l_A 24 ANQCQRIVEMA 34 (299)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34444444433
No 7
>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Probab=25.31 E-value=2.3e+02 Score=21.69 Aligned_cols=6 Identities=0% Similarity=-0.191 Sum_probs=2.7
Q ss_pred HHHHHH
Q 033468 48 DLRLRF 53 (118)
Q Consensus 48 ~iR~~F 53 (118)
++...|
T Consensus 72 ~i~~~~ 77 (300)
T 2ffj_A 72 RVYEIL 77 (300)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 444444
No 8
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=23.36 E-value=40 Score=20.46 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHhhcCCCCcCCCCCCCccc
Q 033468 67 RMIDEAEATYNKWRHPDPYIVPWAPGGSKF 96 (118)
Q Consensus 67 ~Ll~~G~~eL~~~~Hp~Py~~p~~pgG~~~ 96 (118)
..|++.-+.|....|||- ||+.|
T Consensus 22 ~~Ik~~yr~Lm~~nhPDk-------GGS~y 44 (65)
T 2guz_B 22 DKINNRFNYLFEVNDKEK-------GGSFY 44 (65)
T ss_dssp HHHHHHHHHHHHHTCGGG-------TCCHH
T ss_pred HHHHHHHHHHHHHhCCCC-------CCCHH
Confidence 456677788999999985 77755
No 9
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=19.87 E-value=38 Score=16.50 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=8.1
Q ss_pred CcCCCCCCCcc
Q 033468 85 YIVPWAPGGSK 95 (118)
Q Consensus 85 y~~p~~pgG~~ 95 (118)
+.||--|||+.
T Consensus 3 wrfparpg~s~ 13 (21)
T 3u85_B 3 WRFPARPGTTG 13 (26)
T ss_pred cccccCCCccc
Confidence 56888888764
No 10
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=19.71 E-value=1.2e+02 Score=21.84 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhHhhcCCCCcCCCCCCCccccc
Q 033468 62 LDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCR 98 (118)
Q Consensus 62 p~~I~~Ll~~G~~eL~~~~Hp~Py~~p~~pgG~~~~R 98 (118)
...++.|+++.+.+|++..- +|..|.++.|.+
T Consensus 6 l~~~q~l~kele~eL~eLek-----~p~y~~~s~Y~~ 37 (154)
T 4fz4_A 6 VEEVQKVVKELEKELGELDK-----VPSYGDAQDYSY 37 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----SCCCCSCGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-----ccccCCcchhhH
Confidence 45678999999999998875 677777777753
Done!