Query 033469
Match_columns 118
No_of_seqs 230 out of 1095
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02322 acyl-CoA thioesterase 99.9 1.7E-22 3.6E-27 139.1 11.5 88 28-118 8-95 (154)
2 PRK10254 thioesterase; Provisi 99.9 2.8E-22 6E-27 135.8 11.2 86 30-118 17-103 (137)
3 PRK10293 acyl-CoA esterase; Pr 99.9 2.2E-22 4.8E-27 136.1 10.4 84 32-118 19-103 (136)
4 PRK11688 hypothetical protein; 99.9 2.5E-21 5.5E-26 133.1 10.5 102 1-118 4-121 (154)
5 KOG3328 HGG motif-containing t 99.8 1E-20 2.2E-25 128.0 8.5 85 33-118 22-106 (148)
6 TIGR02286 PaaD phenylacetic ac 99.8 3.7E-20 8E-25 121.2 9.7 79 38-118 3-81 (114)
7 TIGR00369 unchar_dom_1 unchara 99.8 1.4E-19 3.1E-24 118.7 10.1 80 38-118 5-85 (117)
8 COG2050 PaaI HGG motif-contain 99.8 2.5E-19 5.4E-24 121.4 9.2 80 38-118 23-103 (141)
9 TIGR02447 yiiD_Cterm thioester 99.7 2E-16 4.3E-21 107.1 11.0 78 38-116 11-92 (138)
10 cd03443 PaaI_thioesterase PaaI 99.6 4.4E-15 9.5E-20 95.6 10.1 79 39-118 2-81 (113)
11 PF14539 DUF4442: Domain of un 99.5 2.2E-13 4.7E-18 91.6 10.1 73 38-110 18-91 (132)
12 PRK10694 acyl-CoA esterase; Pr 99.5 1.9E-13 4.2E-18 92.1 8.4 71 46-117 7-78 (133)
13 cd03442 BFIT_BACH Brown fat-in 99.4 2.2E-12 4.7E-17 84.0 8.9 72 46-118 3-75 (123)
14 COG1607 Acyl-CoA hydrolase [Li 99.4 3.2E-12 6.9E-17 88.1 9.2 71 46-117 9-80 (157)
15 PF03061 4HBT: Thioesterase su 99.3 2.6E-11 5.7E-16 73.2 6.9 54 65-118 1-55 (79)
16 KOG4781 Uncharacterized conser 99.2 3.8E-11 8.2E-16 86.7 7.6 72 46-117 122-193 (237)
17 PRK04424 fatty acid biosynthes 99.1 1E-09 2.3E-14 77.6 9.8 73 42-118 76-150 (185)
18 PLN02647 acyl-CoA thioesterase 99.1 9.2E-10 2E-14 86.8 9.3 71 46-117 286-357 (437)
19 PF09500 YiiD_Cterm: Putative 98.9 1.6E-08 3.5E-13 69.0 9.3 92 4-117 2-97 (144)
20 cd00556 Thioesterase_II Thioes 98.9 2.8E-09 6.1E-14 67.0 5.3 54 65-118 14-67 (99)
21 PLN02647 acyl-CoA thioesterase 98.9 1.9E-08 4E-13 79.5 9.2 78 40-117 77-168 (437)
22 cd00586 4HBT 4-hydroxybenzoyl- 98.6 2E-07 4.2E-12 58.3 7.3 66 52-117 2-75 (110)
23 cd03440 hot_dog The hotdog fol 98.4 3.5E-06 7.7E-11 49.6 8.4 65 53-117 3-68 (100)
24 KOG2763 Acyl-CoA thioesterase 98.3 4.9E-06 1.1E-10 64.1 7.7 73 44-117 193-266 (357)
25 TIGR02799 thio_ybgC tol-pal sy 97.7 0.0002 4.3E-09 46.6 7.1 65 53-117 3-76 (126)
26 TIGR00051 acyl-CoA thioester h 97.5 0.00064 1.4E-08 43.4 6.7 63 55-117 2-72 (117)
27 PRK10800 acyl-CoA thioesterase 97.4 0.0021 4.6E-08 42.2 8.6 66 52-117 4-77 (130)
28 cd03449 R_hydratase (R)-hydrat 97.1 0.0015 3.3E-08 42.4 5.4 51 64-118 44-94 (128)
29 COG0824 FcbC Predicted thioest 96.9 0.0095 2E-07 40.0 8.0 68 50-117 5-80 (137)
30 PF13622 4HBT_3: Thioesterase- 96.9 0.0028 6.2E-08 46.1 5.7 49 65-118 9-57 (255)
31 cd03445 Thioesterase_II_repeat 96.9 0.0035 7.6E-08 39.5 5.2 49 64-117 14-62 (94)
32 PF13279 4HBT_2: Thioesterase- 96.6 0.02 4.3E-07 36.8 7.8 59 58-117 2-67 (121)
33 cd03441 R_hydratase_like (R)-h 96.4 0.0088 1.9E-07 38.5 5.0 51 64-117 41-91 (127)
34 PRK00006 fabZ (3R)-hydroxymyri 96.4 0.1 2.2E-06 35.0 10.3 76 43-118 28-113 (147)
35 cd01288 FabZ FabZ is a 17kD be 96.3 0.11 2.4E-06 33.7 9.7 76 43-118 13-99 (131)
36 PRK07531 bifunctional 3-hydrox 96.3 0.033 7.2E-07 44.9 8.4 71 47-117 342-419 (495)
37 PF01575 MaoC_dehydratas: MaoC 95.7 0.058 1.3E-06 35.1 6.3 51 64-117 49-99 (122)
38 COG4109 Predicted transcriptio 95.5 0.18 3.9E-06 39.5 9.0 62 55-117 337-398 (432)
39 cd03455 SAV4209 SAV4209 is a S 95.0 0.089 1.9E-06 34.2 5.5 46 67-117 45-90 (123)
40 cd03447 FAS_MaoC FAS_MaoC, the 94.9 0.13 2.9E-06 33.9 6.2 49 66-117 43-91 (126)
41 cd00493 FabA_FabZ FabA/Z, beta 94.8 0.63 1.4E-05 29.9 10.1 77 42-118 11-100 (131)
42 cd03453 SAV4209_like SAV4209_l 94.7 0.14 3E-06 33.5 5.8 47 66-117 45-91 (127)
43 cd03448 HDE_HSD HDE_HSD The R 94.7 0.17 3.7E-06 33.3 6.2 49 66-117 45-93 (122)
44 COG5496 Predicted thioesterase 94.5 0.66 1.4E-05 31.1 8.4 55 63-117 26-81 (130)
45 cd03451 FkbR2 FkbR2 is a Strep 93.0 0.15 3.3E-06 33.8 3.7 49 65-117 53-102 (146)
46 TIGR00189 tesB acyl-CoA thioes 93.0 0.19 4E-06 37.1 4.4 48 66-118 21-68 (271)
47 cd03450 NodN NodN (nodulation 92.9 0.16 3.5E-06 34.6 3.7 50 67-118 58-109 (149)
48 PRK13188 bifunctional UDP-3-O- 92.9 2 4.2E-05 34.8 10.2 76 43-118 342-427 (464)
49 TIGR01750 fabZ beta-hydroxyacy 92.8 1.9 4.1E-05 28.5 9.0 75 43-117 21-108 (140)
50 cd03446 MaoC_like MoaC_like 92.4 0.18 4E-06 33.2 3.4 48 67-117 52-101 (140)
51 cd03452 MaoC_C MaoC_C The C-t 92.0 0.42 9.2E-06 31.9 4.8 48 67-118 52-100 (142)
52 PF07977 FabA: FabA-like domai 90.6 3.5 7.5E-05 27.2 9.4 75 43-117 13-108 (138)
53 cd03454 YdeM YdeM is a Bacillu 90.1 0.97 2.1E-05 29.8 5.1 20 99-118 81-100 (140)
54 PRK08190 bifunctional enoyl-Co 89.9 1.3 2.7E-05 35.7 6.4 48 66-117 59-106 (466)
55 PLN02868 acyl-CoA thioesterase 88.8 1.1 2.5E-05 35.1 5.4 70 40-117 135-204 (413)
56 PRK10526 acyl-CoA thioesterase 87.3 1.8 3.8E-05 32.5 5.4 67 41-117 12-78 (286)
57 PLN02864 enoyl-CoA hydratase 86.1 3.2 7E-05 31.6 6.3 49 66-117 228-276 (310)
58 PRK13692 (3R)-hydroxyacyl-ACP 85.3 1.4 3E-05 30.3 3.6 24 94-117 84-107 (159)
59 cd03444 Thioesterase_II_repeat 84.7 7.2 0.00016 24.7 6.6 52 66-117 15-71 (104)
60 cd01289 FabA_like Domain of un 83.5 11 0.00023 25.1 11.3 77 42-118 18-104 (138)
61 TIGR00189 tesB acyl-CoA thioes 82.6 13 0.00028 27.2 8.1 67 51-118 167-238 (271)
62 cd01287 FabA FabA, beta-hydrox 80.2 16 0.00034 24.9 9.7 70 49-118 27-111 (150)
63 COG2030 MaoC Acyl dehydratase 79.6 1.6 3.6E-05 29.8 2.3 19 99-117 99-117 (159)
64 PRK13691 (3R)-hydroxyacyl-ACP 79.2 2.6 5.6E-05 29.2 3.1 22 96-117 86-107 (166)
65 PF13452 MaoC_dehydrat_N: N-te 77.2 3.6 7.8E-05 26.7 3.3 26 92-117 73-98 (132)
66 KOG2763 Acyl-CoA thioesterase 75.4 11 0.00023 29.6 5.8 55 57-111 15-79 (357)
67 PRK13693 (3R)-hydroxyacyl-ACP 75.0 12 0.00027 25.0 5.5 48 65-117 54-106 (142)
68 TIGR02278 PaaN-DH phenylacetic 73.6 5.2 0.00011 33.7 4.0 48 67-118 575-623 (663)
69 PRK10526 acyl-CoA thioesterase 69.3 23 0.0005 26.5 6.3 53 66-118 192-250 (286)
70 TIGR00074 hypC_hupF hydrogenas 64.4 16 0.00034 22.2 3.8 24 94-117 23-46 (76)
71 COG0764 FabA 3-hydroxymyristoy 62.9 19 0.00042 24.5 4.4 77 42-118 24-111 (147)
72 PF13622 4HBT_3: Thioesterase- 59.5 11 0.00025 27.0 3.1 65 49-117 155-222 (255)
73 PLN02370 acyl-ACP thioesterase 58.0 98 0.0021 24.9 9.0 67 51-117 140-220 (419)
74 KOG3016 Acyl-CoA thioesterase 55.6 31 0.00067 26.4 4.8 69 41-115 14-82 (294)
75 PRK11563 bifunctional aldehyde 46.3 18 0.00039 30.5 2.5 48 67-118 587-635 (675)
76 PRK05174 3-hydroxydecanoyl-(ac 45.2 1E+02 0.0022 21.4 9.4 68 50-117 54-129 (172)
77 COG3510 CmcI Cephalosporin hyd 44.0 12 0.00027 27.2 1.1 57 55-116 66-124 (237)
78 PF01455 HupF_HypC: HupF/HypC 43.1 20 0.00044 21.1 1.8 23 95-117 26-48 (68)
79 PRK10409 hydrogenase assembly 36.9 70 0.0015 20.1 3.6 25 93-117 22-52 (90)
80 PF10886 DUF2685: Protein of u 36.7 43 0.00093 19.0 2.3 30 51-80 5-36 (54)
81 PF02551 Acyl_CoA_thio: Acyl-C 36.6 72 0.0016 21.5 3.8 51 67-117 45-98 (131)
82 PLN02868 acyl-CoA thioesterase 35.5 1.1E+02 0.0024 24.0 5.4 52 66-117 325-380 (413)
83 COG3884 FatA Acyl-ACP thioeste 32.3 90 0.0019 23.3 4.0 58 54-116 156-213 (250)
84 PF08671 SinI: Anti-repressor 29.9 43 0.00092 16.6 1.4 11 2-12 18-28 (30)
85 PF04989 CmcI: Cephalosporin h 29.8 39 0.00084 24.5 1.8 44 56-104 30-73 (206)
86 COG1946 TesB Acyl-CoA thioeste 28.5 1.2E+02 0.0027 23.1 4.3 50 67-116 193-248 (289)
87 KOG1206 Peroxisomal multifunct 28.4 61 0.0013 24.2 2.6 44 66-115 192-235 (272)
88 TIGR01749 fabA beta-hydroxyacy 27.1 2.2E+02 0.0047 19.7 10.1 67 50-116 51-125 (169)
89 PF11569 Homez: Homeodomain le 27.1 43 0.00093 19.2 1.3 14 1-14 37-50 (56)
90 TIGR00541 hisDCase_pyru histid 26.9 5.6 0.00012 30.1 -3.0 69 3-75 209-279 (310)
91 PF10989 DUF2808: Protein of u 22.8 1.2E+02 0.0026 20.3 3.1 21 96-116 88-108 (146)
92 PF11338 DUF3140: Protein of u 22.1 60 0.0013 20.5 1.4 15 1-15 8-22 (92)
93 PRK10413 hydrogenase 2 accesso 22.0 1.8E+02 0.0039 17.8 3.5 24 94-117 26-53 (82)
94 PLN02370 acyl-ACP thioesterase 21.9 3.2E+02 0.007 22.0 5.8 63 50-117 301-363 (419)
95 COG4706 Predicted 3-hydroxylac 21.5 2.9E+02 0.0063 19.2 5.7 42 42-83 27-71 (161)
96 PF09425 CCT_2: Divergent CCT 20.7 63 0.0014 15.7 1.0 11 4-14 6-16 (27)
No 1
>PLN02322 acyl-CoA thioesterase
Probab=99.89 E-value=1.7e-22 Score=139.10 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=76.7
Q ss_pred CCchhhhhhhhcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCC
Q 033469 28 MPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAA 107 (118)
Q Consensus 28 ~~~~~~~~~~~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~ 107 (118)
...+|... +|+++.++++|+++++++++++|+|++|.+|||++++|+|.++++++........++|+++++||+||+
T Consensus 8 ~~dpf~~~---LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa 84 (154)
T PLN02322 8 AIDPPLHM---LGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSA 84 (154)
T ss_pred ccchHHHH---CCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccC
Confidence 34455554 699999999999999999999999999999999999999999998876543334679999999999999
Q ss_pred CCCCEEEEEeC
Q 033469 108 FGGVKFLDFCD 118 (118)
Q Consensus 108 ~~g~~v~~e~~ 118 (118)
+.|+.|+++|+
T Consensus 85 ~~G~~L~Aea~ 95 (154)
T PLN02322 85 DLGDLVFAEAT 95 (154)
T ss_pred CCCCEEEEEEE
Confidence 99999998874
No 2
>PRK10254 thioesterase; Provisional
Probab=99.89 E-value=2.8e-22 Score=135.77 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=75.6
Q ss_pred chhhhhhhhcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHh-CCCCeeeeEEEEEeeecCCC
Q 033469 30 TKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-GAPSVGVSVEINVSYLDAAF 108 (118)
Q Consensus 30 ~~~~~~~~~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~-~~~~~~vT~~l~i~flrp~~ 108 (118)
...|.. ++|+++.++++|++++++++++++.|+.|.+|||++++|+|.++++|++.. .++...+|+++++|||||++
T Consensus 17 ~~~~~~--~LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~ 94 (137)
T PRK10254 17 DNTMVA--HLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVS 94 (137)
T ss_pred ccchHH--hhCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCc
Confidence 334555 469999999999999999999999999999999999999999999998864 34567899999999999999
Q ss_pred CCCEEEEEeC
Q 033469 109 GGVKFLDFCD 118 (118)
Q Consensus 109 ~g~~v~~e~~ 118 (118)
.| .|+++|+
T Consensus 95 ~g-~l~a~a~ 103 (137)
T PRK10254 95 EG-KVRGVCQ 103 (137)
T ss_pred CC-eEEEEEE
Confidence 88 6888763
No 3
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.88 E-value=2.2e-22 Score=136.09 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=74.6
Q ss_pred hhhhhhhcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEeeecCCCCC
Q 033469 32 FFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGG 110 (118)
Q Consensus 32 ~~~~~~~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~-~~~~~vT~~l~i~flrp~~~g 110 (118)
.|.. ++|+++.++++|+++++++++|+|+|+.|.+|||++++|+|.++++++.... ++...+|+++++||+||++.|
T Consensus 19 ~~~~--~LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g 96 (136)
T PRK10293 19 NMVG--LLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREG 96 (136)
T ss_pred cHHH--hcCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCc
Confidence 3555 4799999999999999999999999999999999999999999999887754 345789999999999999988
Q ss_pred CEEEEEeC
Q 033469 111 VKFLDFCD 118 (118)
Q Consensus 111 ~~v~~e~~ 118 (118)
.|+++|+
T Consensus 97 -~l~a~a~ 103 (136)
T PRK10293 97 -RVRGVCK 103 (136)
T ss_pred -eEEEEEE
Confidence 5888873
No 4
>PRK11688 hypothetical protein; Provisional
Probab=99.86 E-value=2.5e-21 Score=133.12 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=83.3
Q ss_pred CChHHHHHHHHcCCCCCCCCCCccccCCCchhhhhhhhcCeEEEEecCCEEEEEEEcCCCccC--CCCCCcHHHHHHHHH
Q 033469 1 MELESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLN--AGNFMHGGATATLVD 78 (118)
Q Consensus 1 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~v~~~~~v~~~~~n--~~G~lHGG~i~~l~D 78 (118)
|++++.++.++..-. +...|.. ++|+++.++++|.++++++++++|+| +.|.+|||++++|+|
T Consensus 4 ~~~~~~~~~~~~~~~-------------~~~pf~~--~lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D 68 (154)
T PRK11688 4 LTQEEALKLVGEIFV-------------YHMPFNR--LLGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLD 68 (154)
T ss_pred cCHHHHHHHHHHHHH-------------hcCCHHH--HhCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHH
Confidence 788888888887551 0112455 46999999999999999999999995 689999999999999
Q ss_pred HHHHHHHHHhCC--------------CCeeeeEEEEEeeecCCCCCCEEEEEeC
Q 033469 79 LVGSAAIFTVGA--------------PSVGVSVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 79 ~a~g~a~~~~~~--------------~~~~vT~~l~i~flrp~~~g~~v~~e~~ 118 (118)
.+++++++.... ...++|++++++|+||++ |+.|+++|+
T Consensus 69 ~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a~a~ 121 (154)
T PRK11688 69 VAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTATSS 121 (154)
T ss_pred HHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEEEEE
Confidence 999999886421 124589999999999996 888988874
No 5
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.84 E-value=1e-20 Score=127.96 Aligned_cols=85 Identities=45% Similarity=0.653 Sum_probs=78.3
Q ss_pred hhhhhhcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCE
Q 033469 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVK 112 (118)
Q Consensus 33 ~~~~~~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~ 112 (118)
|++. +.++++..+++|+++++|+++++|+|+.+++|||++|+|+|.++++|+....+..+.++++|+|+||+|++.|+.
T Consensus 22 Fd~~-~~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~ 100 (148)
T KOG3328|consen 22 FDRV-LNNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEE 100 (148)
T ss_pred hhhh-cCceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCCCe
Confidence 6655 489999999999999999999999999999999999999999999987766667789999999999999999999
Q ss_pred EEEEeC
Q 033469 113 FLDFCD 118 (118)
Q Consensus 113 v~~e~~ 118 (118)
|++||.
T Consensus 101 l~i~a~ 106 (148)
T KOG3328|consen 101 LEIEAT 106 (148)
T ss_pred EEEEEE
Confidence 999983
No 6
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.83 E-value=3.7e-20 Score=121.18 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=71.2
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 38 ~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.+|+++.++++|++.++++++|+|+|+.|++|||++++++|.+++.++.... ...+|++++++|+||++.|+.|+++|
T Consensus 3 ~lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~~--~~~~t~~~~i~f~rp~~~G~~l~~~a 80 (114)
T TIGR02286 3 ALGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSYG--DAAVAAQCTIDFLRPGRAGERLEAEA 80 (114)
T ss_pred ccCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCCC--CceEEEEEEEEEecCCCCCCEEEEEE
Confidence 4799999999999999999999999999999999999999999887765433 34689999999999999999999887
Q ss_pred C
Q 033469 118 D 118 (118)
Q Consensus 118 ~ 118 (118)
+
T Consensus 81 ~ 81 (114)
T TIGR02286 81 V 81 (114)
T ss_pred E
Confidence 3
No 7
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.82 E-value=1.4e-19 Score=118.70 Aligned_cols=80 Identities=29% Similarity=0.379 Sum_probs=72.3
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEeeecCCCCCCEEEEE
Q 033469 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGVKFLDF 116 (118)
Q Consensus 38 ~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~-~~~~~vT~~l~i~flrp~~~g~~v~~e 116 (118)
++|+++.+++++++++++++.|+++|+.|++|||++++++|.++++++.... .+...+|++++++|+||++.| .|+++
T Consensus 5 ~lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~ 83 (117)
T TIGR00369 5 FLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAI 83 (117)
T ss_pred ccCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEE
Confidence 4799999999999999999999999999999999999999999988776543 456779999999999999999 89888
Q ss_pred eC
Q 033469 117 CD 118 (118)
Q Consensus 117 ~~ 118 (118)
|+
T Consensus 84 a~ 85 (117)
T TIGR00369 84 AQ 85 (117)
T ss_pred EE
Confidence 74
No 8
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=2.5e-19 Score=121.41 Aligned_cols=80 Identities=26% Similarity=0.444 Sum_probs=73.3
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCC-CCeeeeEEEEEeeecCCCCCCEEEEE
Q 033469 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGA-PSVGVSVEINVSYLDAAFGGVKFLDF 116 (118)
Q Consensus 38 ~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~-~~~~vT~~l~i~flrp~~~g~~v~~e 116 (118)
.+|+++..+++|++++++++.+++.|+.|++|||++++++|.++++|++.... ....+|+++++||+||++.|+ ++++
T Consensus 23 ~lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~-v~a~ 101 (141)
T COG2050 23 TLGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD-VTAE 101 (141)
T ss_pred hcCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe-EEEE
Confidence 46999999999999999999999999999999999999999999999998754 345589999999999999999 8888
Q ss_pred eC
Q 033469 117 CD 118 (118)
Q Consensus 117 ~~ 118 (118)
|+
T Consensus 102 a~ 103 (141)
T COG2050 102 AR 103 (141)
T ss_pred EE
Confidence 74
No 9
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.71 E-value=2e-16 Score=107.14 Aligned_cols=78 Identities=22% Similarity=0.240 Sum_probs=64.3
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHH----hCCCCeeeeEEEEEeeecCCCCCCEE
Q 033469 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFT----VGAPSVGVSVEINVSYLDAAFGGVKF 113 (118)
Q Consensus 38 ~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~----~~~~~~~vT~~l~i~flrp~~~g~~v 113 (118)
.+|+++.+++++++++++++.++ .|+.|++|||++++|+|.+++.++.. ...+...+|++++++|++|++.+-..
T Consensus 11 ~lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~~~~a 89 (138)
T TIGR02447 11 AMGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTGDPVA 89 (138)
T ss_pred HcCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCCCeEE
Confidence 47999999999999999999997 89999999999999999887765532 12234689999999999999865333
Q ss_pred EEE
Q 033469 114 LDF 116 (118)
Q Consensus 114 ~~e 116 (118)
+++
T Consensus 90 ~~~ 92 (138)
T TIGR02447 90 NCE 92 (138)
T ss_pred EEE
Confidence 333
No 10
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.63 E-value=4.4e-15 Score=95.65 Aligned_cols=79 Identities=39% Similarity=0.596 Sum_probs=71.4
Q ss_pred cCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 39 ~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~-~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
+|+++.+.+++.+++++++.+.++|..|++|||++++++|.+++..++... ++...++.+++++|++|++. +.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~ 80 (113)
T cd03443 2 LGIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARA 80 (113)
T ss_pred CcEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEE
Confidence 488899999999999999999999999999999999999999999888764 34567899999999999999 8888876
Q ss_pred C
Q 033469 118 D 118 (118)
Q Consensus 118 ~ 118 (118)
+
T Consensus 81 ~ 81 (113)
T cd03443 81 R 81 (113)
T ss_pred E
Confidence 3
No 11
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.51 E-value=2.2e-13 Score=91.56 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=56.1
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCC-CCeeeeEEEEEeeecCCCCC
Q 033469 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGA-PSVGVSVEINVSYLDAAFGG 110 (118)
Q Consensus 38 ~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~-~~~~vT~~l~i~flrp~~~g 110 (118)
..|+++.++++++++++++.++...|+.|++|||++++++|.++++.+....+ ....+..+++++|++|++..
T Consensus 18 ~~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~g~ 91 (132)
T PF14539_consen 18 TAGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPARGD 91 (132)
T ss_dssp CCT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S---S-
T ss_pred cceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccCCc
Confidence 47999999999999999999999999999999999999999999988887653 44567899999999998844
No 12
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.49 E-value=1.9e-13 Score=92.10 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=63.4
Q ss_pred ecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEeeecCCCCCCEEEEEe
Q 033469 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 46 ~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l-~i~flrp~~~g~~v~~e~ 117 (118)
+.++...+...+.|+++|++|++|||.+++++|.++++++..... ..++|+++ .++|++|++.|+.|.+++
T Consensus 7 ~~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~-~~~vtv~vd~i~F~~Pv~~Gd~l~~~a 78 (133)
T PRK10694 7 VPQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAH-GRVVTVRVEGMTFLRPVAVGDVVCCYA 78 (133)
T ss_pred CCCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcC-CceEEEEECceEECCCcccCcEEEEEE
Confidence 356778889999999999999999999999999999999987664 46899999 689999999999998876
No 13
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.41 E-value=2.2e-12 Score=84.01 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=62.2
Q ss_pred ecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEeeecCCCCCCEEEEEeC
Q 033469 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 46 ~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l-~i~flrp~~~g~~v~~e~~ 118 (118)
.+++.+++++++.+.++|+.|.+|||++++++|.+++.++..... ...++..+ +++|++|++.|+.|.++++
T Consensus 3 ~~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~-~~~~~~~~~~~~f~~p~~~gd~l~i~~~ 75 (123)
T cd03442 3 MEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAG-GRVVTASVDRIDFLKPVRVGDVVELSAR 75 (123)
T ss_pred CCccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhC-CcEEEEEECceEEcCccccCcEEEEEEE
Confidence 367889999999999999999999999999999999888765542 24567777 7999999999999998863
No 14
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.39 E-value=3.2e-12 Score=88.14 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=63.7
Q ss_pred ecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEeeecCCCCCCEEEEEe
Q 033469 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 46 ~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l-~i~flrp~~~g~~v~~e~ 117 (118)
..++...++..+-|...|++|++|||.+++++|.++++++..+.. ..+||+++ +++|++|++.|+.|.+.+
T Consensus 9 ~~~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~-~~vVTasvd~v~F~~Pv~vGd~v~~~a 80 (157)
T COG1607 9 LPEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAG-GRVVTASVDSVDFKKPVRVGDIVCLYA 80 (157)
T ss_pred CCCceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhC-CeEEEEEeceEEEccccccCcEEEEEE
Confidence 346777888899999999999999999999999999999998874 37899998 599999999999999876
No 15
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.26 E-value=2.6e-11 Score=73.17 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=47.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCC-CeeeeEEEEEeeecCCCCCCEEEEEeC
Q 033469 65 GNFMHGGATATLVDLVGSAAIFTVGAP-SVGVSVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 65 ~G~lHGG~i~~l~D~a~g~a~~~~~~~-~~~vT~~l~i~flrp~~~g~~v~~e~~ 118 (118)
+|++|||.+++++|.++..++...... ...++++++++|++|++.|+.++++++
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~ 55 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEAR 55 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEE
Confidence 589999999999999999999987643 567899999999999999999999873
No 16
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=3.8e-11 Score=86.67 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=66.4
Q ss_pred ecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 46 ~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.+.++.++-+.+.+++.++.|.+|||+|+|++|++++++++...+.+..+|++|+++|.+|++....+++.+
T Consensus 122 ~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~vi~t 193 (237)
T KOG4781|consen 122 PSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVVIRT 193 (237)
T ss_pred cCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEEEec
Confidence 356789999999999999999999999999999999999998877788999999999999999999888764
No 17
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.10 E-value=1e-09 Score=77.64 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=60.8
Q ss_pred EEEEecCC-EEEEEEEcCCCcc-CCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEeC
Q 033469 42 RVDLSEPG-RVICSMKVPPRLL-NAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 42 ~~~~~~~g-~v~~~~~v~~~~~-n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~~ 118 (118)
++.++++| .++..+.+..++. |..+++|||++++++|.++.++ . +...+++...+++|++|+++|++|.++++
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~-~~~~~~~~i~~irF~kPV~pGD~L~~ea~ 150 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---I-DAELALTGVANIRFKRPVKLGERVVAKAE 150 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---c-CCcEEEEEeeeEEEccCCCCCCEEEEEEE
Confidence 46678888 6899999999998 9999999999999999864332 1 23456788889999999999999999874
No 18
>PLN02647 acyl-CoA thioesterase
Probab=99.07 E-value=9.2e-10 Score=86.78 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=63.4
Q ss_pred ecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEeeecCCCCCCEEEEEe
Q 033469 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 46 ~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l-~i~flrp~~~g~~v~~e~ 117 (118)
.++-+++....+.|.+.|.+|.+|||.++.++|.++++++..+.. ..++|+++ .++|++|++.|+.|.++|
T Consensus 286 m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~-~~~vt~svd~v~F~~PV~vGdil~l~A 357 (437)
T PLN02647 286 IRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAG-LRPYFLEVDHVDFLRPVDVGDFLRFKS 357 (437)
T ss_pred ccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcC-CceEEEEecceEecCccccCcEEEEEE
Confidence 456678888999999999999999999999999999999988764 46888888 599999999999999876
No 19
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=98.91 E-value=1.6e-08 Score=69.02 Aligned_cols=92 Identities=22% Similarity=0.308 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCCCCCCCCCccccCCCchhhhhhhhcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHH
Q 033469 4 ESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSA 83 (118)
Q Consensus 4 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~ 83 (118)
+++|+||...+ +-...+|+++...++++++++.|..|+ .|..|+++||.+++++=.++..
T Consensus 2 ~~Lq~~lh~~I-------------------Pls~~Mgi~v~~~~~~~l~~~APL~pN-~N~~~T~FgGSl~slatLaGW~ 61 (144)
T PF09500_consen 2 QELQQFLHEHI-------------------PLSKAMGIKVTSYTGQRLELSAPLAPN-INHHGTMFGGSLYSLATLAGWG 61 (144)
T ss_dssp HHHHHHHHHH--------------------HHHHHTT-EEEEEETTEEEEE--SGGG-B-TTSSB-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC-------------------ChhhhcCcEEEEEcCCEEEEeccCCCC-cCCCCCcchHHHHHHHHHHHHH
Confidence 46777887777 222257999999999999999999996 9999999999999999988887
Q ss_pred HHHHhC----CCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 84 AIFTVG----APSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 84 a~~~~~----~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.++... .....|-.+-+|+|++|+... ++++|
T Consensus 62 lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~~d--~~A~~ 97 (144)
T PF09500_consen 62 LVWLQLKEAGLNGDIVIADSNIRYLKPVTGD--FTARC 97 (144)
T ss_dssp HHHHHHHHHT---EEEEEEEEEEE-S---S----EEEE
T ss_pred HHHHHHHHhCCCCcEEEEeCceEEcCCCCCC--cEEEE
Confidence 766432 234678899999999999855 44444
No 20
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.91 E-value=2.8e-09 Score=66.98 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=46.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEeC
Q 033469 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 65 ~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~~ 118 (118)
.+.+|||++++++|.+++.++....+....+|++++++|++|++.+++++.+++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~ 67 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVE 67 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEE
Confidence 789999999999999999887764434467899999999999999999988763
No 21
>PLN02647 acyl-CoA thioesterase
Probab=98.86 E-value=1.9e-08 Score=79.47 Aligned_cols=78 Identities=12% Similarity=0.002 Sum_probs=64.5
Q ss_pred CeEEEEecCCEEEEEEEcCC------CccCCCCCCcHHHHHHHHHHHHHHHHHHhCCC-------CeeeeEEE-EEeeec
Q 033469 40 GLRVDLSEPGRVICSMKVPP------RLLNAGNFMHGGATATLVDLVGSAAIFTVGAP-------SVGVSVEI-NVSYLD 105 (118)
Q Consensus 40 g~~~~~~~~g~v~~~~~v~~------~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~-------~~~vT~~l-~i~flr 105 (118)
.+......+.++.+.+++.+ .+.|+.|.+|||-|+.++|.++++++..+... ..+||+++ +|+|++
T Consensus 77 ~L~~k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~ 156 (437)
T PLN02647 77 ELLTKTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKK 156 (437)
T ss_pred cccccccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcC
Confidence 34444566778888886544 44999999999999999999999999987643 15899998 699999
Q ss_pred CCCCCCEEEEEe
Q 033469 106 AAFGGVKFLDFC 117 (118)
Q Consensus 106 p~~~g~~v~~e~ 117 (118)
|++.|+.|.+++
T Consensus 157 Pi~~g~~v~l~g 168 (437)
T PLN02647 157 PIRVDVDLKIVG 168 (437)
T ss_pred CCcCCcEEEEEE
Confidence 999999999876
No 22
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=98.64 E-value=2e-07 Score=58.33 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=56.4
Q ss_pred EEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 52 ICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 52 ~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~--------~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
+.++++.+.++|..|.+|+|.+.+++|.+....+...+ .+...++.+.+++|++|++.|+.|.+++
T Consensus 2 ~~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~ 75 (110)
T cd00586 2 TLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVET 75 (110)
T ss_pred cEEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEE
Confidence 35678899999999999999999999999987766542 2345678999999999999999999886
No 23
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.42 E-value=3.5e-06 Score=49.58 Aligned_cols=65 Identities=23% Similarity=0.347 Sum_probs=55.2
Q ss_pred EEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 53 ~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~-~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
..+.+.+...+..+.+|||.+..++|.+......... .....+..+.+++|++|++.|+.+.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~ 68 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEA 68 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEE
Confidence 4677888888999999999999999999988877643 2345688999999999999999999875
No 24
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=98.25 E-value=4.9e-06 Score=64.05 Aligned_cols=73 Identities=10% Similarity=-0.018 Sum_probs=61.9
Q ss_pred EEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEeeecCCCCCCEEEEEe
Q 033469 44 DLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 44 ~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l-~i~flrp~~~g~~v~~e~ 117 (118)
....+.++....-..|++.|.+|.+|||+++-.++..+...|...... ...+.++ .|+|.+|+..|..|.+.+
T Consensus 193 ~~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~~-~p~~rsVD~i~F~~pVdvG~~L~f~s 266 (357)
T KOG2763|consen 193 VWMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKG-RPATRSVDDIEFQKPVDVGCVLTFSS 266 (357)
T ss_pred eEeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcCC-CceEEEechhhccCcceeeeEEEEee
Confidence 345677888888899999999999999999999999999999988754 3455555 699999999999998765
No 25
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=97.73 E-value=0.0002 Score=46.61 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=52.7
Q ss_pred EEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC--------C-CCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------A-PSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 53 ~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~--------~-~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
..++++...+++.|.+|.+.+..+++.+........+ . +...+.++.+++|++|++.|+.|.+++
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~ 76 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTT 76 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEE
Confidence 4577888899999999999999999988665544332 1 233578899999999999999999886
No 26
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=97.49 E-value=0.00064 Score=43.38 Aligned_cols=63 Identities=14% Similarity=0.020 Sum_probs=50.8
Q ss_pred EEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 55 ~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~--------~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
+.++...+++.|.+|-+.+..+++.+........+ .+...+.++.+++|++|++.|+.|.+++
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~ 72 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRT 72 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEE
Confidence 45677789999999999999999998765544322 1234578899999999999999999886
No 27
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=97.40 E-value=0.0021 Score=42.24 Aligned_cols=66 Identities=11% Similarity=-0.026 Sum_probs=54.4
Q ss_pred EEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 52 ICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 52 ~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~--------~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
..+.+++...++..|.+|=+.+..+++.+........+ .+...+.++.+++|++|+..|++|.+++
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t 77 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQS 77 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEE
Confidence 45677888899999999999999999998776554432 1234578899999999999999999986
No 28
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=97.12 E-value=0.0015 Score=42.39 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=37.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEeC
Q 033469 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 64 ~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~~ 118 (118)
+.-.+||..++++++.+++. ..++...+..+.+++|++|+..|+.|.++++
T Consensus 44 ~~~i~~g~~~~~~~~~~~~~----~~~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~ 94 (128)
T cd03449 44 GGRIAHGMLTASLISAVLGT----LLPGPGTIYLSQSLRFLRPVFIGDTVTATVT 94 (128)
T ss_pred CCceecHHHHHHHHHHHHhc----cCCCceEEEEEEEEEECCCccCCCEEEEEEE
Confidence 34589999999988764322 1222345667889999999999999988763
No 29
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=96.92 E-value=0.0095 Score=40.04 Aligned_cols=68 Identities=15% Similarity=0.078 Sum_probs=56.4
Q ss_pred EEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 50 ~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~--------~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.....++|+...+...|.+|=+....+++.+-.-.....+ .+...+.++++++|++|++.|+.+.+++
T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~ 80 (137)
T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRT 80 (137)
T ss_pred ceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEE
Confidence 3567788888899999999999999999998776665532 1234689999999999999999999875
No 30
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=96.89 E-value=0.0028 Score=46.08 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=32.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEeC
Q 033469 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 65 ~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~~ 118 (118)
.+.+|||++++++=.++-... ........+++++|++|++.| .+.++++
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~----~~~~~~~~s~~~~fl~p~~~~-~~~~~v~ 57 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA----PPPGFDPHSLHVYFLRPVPPG-PVEYRVE 57 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH----TTTSSEEEEEEEEESS--BSC-EEEEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc----cCCCCceEEEEeEeccccccC-CEEEEEE
Confidence 668999987766544333222 122357899999999999999 8887753
No 31
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=96.86 E-value=0.0035 Score=39.55 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=37.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 64 ~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
..+.+|||.+++++-.++...+ .. .....+++.+|++|+..+..+.++.
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~---~~--~~~~~s~~~~Fl~p~~~~~pv~~~v 62 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV---PD--DRVPHSLHSYFLRPGDPDQPIEYEV 62 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC---CC--CCCeEEEEEEecCCCCCCCCEEEEE
Confidence 5789999999998877665332 22 2356799999999999887777664
No 32
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=96.64 E-value=0.02 Score=36.81 Aligned_cols=59 Identities=10% Similarity=-0.039 Sum_probs=41.4
Q ss_pred CCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC-------CCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 58 PPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-------APSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 58 ~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~-------~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
++..++ .|.+|-+.+..++|.+-..-....+ .+...+.++.+++|++|++.|+.+.+++
T Consensus 2 r~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~ 67 (121)
T PF13279_consen 2 RWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVET 67 (121)
T ss_dssp -GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEE
T ss_pred CHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEE
Confidence 455688 9999999999999997664443221 2345689999999999999999998876
No 33
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=96.43 E-value=0.0088 Score=38.53 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 64 ~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
+.-.+||..+++++..+..... ...........+++|.+|+..|++|.+++
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~Pv~~Gd~l~~~~ 91 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWL---PGTDGANLGSQSVRFLAPVFPGDTLRVEV 91 (127)
T ss_pred CCceechHHHHHHHHhhhhhhc---cCcccceeEEeEEEEeCCcCCCCEEEEEE
Confidence 4568999999999877554321 11124566788999999999999999876
No 34
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=96.40 E-value=0.1 Score=34.99 Aligned_cols=76 Identities=11% Similarity=0.029 Sum_probs=48.0
Q ss_pred EEEecC-CEEEEEEEcCCCcc--C----CCCCCcHHHHHHHHHHHHHHHHHHhC--CCCeeeeEEE-EEeeecCCCCCCE
Q 033469 43 VDLSEP-GRVICSMKVPPRLL--N----AGNFMHGGATATLVDLVGSAAIFTVG--APSVGVSVEI-NVSYLDAAFGGVK 112 (118)
Q Consensus 43 ~~~~~~-g~v~~~~~v~~~~~--n----~~G~lHGG~i~~l~D~a~g~a~~~~~--~~~~~vT~~l-~i~flrp~~~g~~ 112 (118)
+.++++ ++++....+.+++. . ....++|=.+.-++-.++++.+.... .+...+.... ++.|++|+++|++
T Consensus 28 i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~ 107 (147)
T PRK00006 28 VLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQ 107 (147)
T ss_pred EEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCE
Confidence 445654 67888887777642 2 24568887776666666665443221 1223333333 7999999999999
Q ss_pred EEEEeC
Q 033469 113 FLDFCD 118 (118)
Q Consensus 113 v~~e~~ 118 (118)
|.++++
T Consensus 108 l~i~~~ 113 (147)
T PRK00006 108 LILEVE 113 (147)
T ss_pred EEEEEE
Confidence 998763
No 35
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=96.28 E-value=0.11 Score=33.70 Aligned_cols=76 Identities=8% Similarity=-0.064 Sum_probs=50.9
Q ss_pred EEEec-CCEEEEEEEcCCCc--c-CC---CCCCcHHHHHHHHHHHHHHHHHHhC---CCCeeee-EEEEEeeecCCCCCC
Q 033469 43 VDLSE-PGRVICSMKVPPRL--L-NA---GNFMHGGATATLVDLVGSAAIFTVG---APSVGVS-VEINVSYLDAAFGGV 111 (118)
Q Consensus 43 ~~~~~-~g~v~~~~~v~~~~--~-n~---~G~lHGG~i~~l~D~a~g~a~~~~~---~~~~~vT-~~l~i~flrp~~~g~ 111 (118)
+.+++ +++++....++++. . .. ...++|=++.-++..+++....... .....+. ..-++.|++|+++|+
T Consensus 13 i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd 92 (131)
T cd01288 13 VLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGD 92 (131)
T ss_pred EEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCC
Confidence 45566 46788888777753 2 22 2778888887777777776544321 2223333 335899999999999
Q ss_pred EEEEEeC
Q 033469 112 KFLDFCD 118 (118)
Q Consensus 112 ~v~~e~~ 118 (118)
.++++++
T Consensus 93 ~l~i~~~ 99 (131)
T cd01288 93 QLILEVE 99 (131)
T ss_pred EEEEEEE
Confidence 9988763
No 36
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.26 E-value=0.033 Score=44.90 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=57.2
Q ss_pred cCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC-------CCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 47 EPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-------APSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 47 ~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~-------~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
..--.+.+++|++.+++..|.++=+.+..++|.+..-.....+ .+...+.++.+++|++|++.|+.|.|++
T Consensus 342 ~~~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t 419 (495)
T PRK07531 342 SQPLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVET 419 (495)
T ss_pred CCceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEE
Confidence 3334567999999999999999999999999988665544332 1234478999999999999999999875
No 37
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=95.70 E-value=0.058 Score=35.13 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 64 ~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
+.-.+||-.+++++-... ..............++++|++|+.+|++|.++.
T Consensus 49 ~~~ivhG~~~~a~~~~~~---~~~~~~~~~~~~~~~~~rF~~PV~~gdtl~~~~ 99 (122)
T PF01575_consen 49 GGPIVHGMLTLALASGLL---GDWLGPNPPARLGRFNVRFRAPVFPGDTLTAEV 99 (122)
T ss_dssp SSSB-BHHHHHHHHHHHH---HHHHSTTECEEEEEEEEEESS--BTTEEEEEEE
T ss_pred CCEEEccHHHHHHHHHHH---HHhccCccceEEEEEEEEEeccccCCCEEEEEE
Confidence 345799999988775432 223332224567889999999999999998875
No 38
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=95.48 E-value=0.18 Score=39.49 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=52.4
Q ss_pred EEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 55 ~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
+.+.|.+.|+.|++--|+++.++-.+.-......-. ....-=++++-||+|+...+.+.+..
T Consensus 337 ~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~-~niiIE~i~iyflk~vqid~~l~I~p 398 (432)
T COG4109 337 VEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKK-RNIIIENITIYFLKPVQIDSVLEIYP 398 (432)
T ss_pred EEechhhccccccchHHHHHHHHHHHHHHHHHHhcC-CceEEEeeeeeeecceecccEEEEee
Confidence 889999999999999999999999988877766442 24456678999999999999988753
No 39
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=95.00 E-value=0.089 Score=34.20 Aligned_cols=46 Identities=13% Similarity=0.008 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 67 FMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 67 ~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.+||...++++..+..-. ... ...-.+++++|++|+..|++|.+++
T Consensus 45 ia~G~~~~~~~~~~~~~~---~~~--~~~~~~~~~rf~~pv~~Gdtl~~~~ 90 (123)
T cd03455 45 YVNGPTLAGLVIRYVTDW---AGP--DARVKSFAFRLGAPLYAGDTLRFGG 90 (123)
T ss_pred EEEHHHHHHHHHHHHHHc---cCC--cceEEEEEEEeeccccCCCEEEEEE
Confidence 589999999987654321 121 2344567999999999999999875
No 40
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=94.93 E-value=0.13 Score=33.93 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 66 G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
=++||-..++++-.+.+- . ............+++|++|+.+|++|.++.
T Consensus 43 ~iahG~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~rf~~PV~~gdtl~~~~ 91 (126)
T cd03447 43 TITHGMYTSAAVRALVET--W-AADNDRSRVRSFTASFVGMVLPNDELEVRL 91 (126)
T ss_pred CeechhHHHHHHHHHHHH--h-ccCCCcceEEEEEEEEcccCcCCCEEEEEE
Confidence 358998888887554322 1 221123345667999999999999998765
No 41
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=94.81 E-value=0.63 Score=29.94 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=48.8
Q ss_pred EEEEecC-CEEEEEEEcCCCccC---CC---CCCcHHHHHHHHHHHHHHHHHHhC-----CCCeee-eEEEEEeeecCCC
Q 033469 42 RVDLSEP-GRVICSMKVPPRLLN---AG---NFMHGGATATLVDLVGSAAIFTVG-----APSVGV-SVEINVSYLDAAF 108 (118)
Q Consensus 42 ~~~~~~~-g~v~~~~~v~~~~~n---~~---G~lHGG~i~~l~D~a~g~a~~~~~-----~~~~~v-T~~l~i~flrp~~ 108 (118)
++.++++ ++++++..+.+++-- ++ +.+-|=++.-++=.+++..+.... ..+... ..--++.|++|+.
T Consensus 11 ~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~ 90 (131)
T cd00493 11 RVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVL 90 (131)
T ss_pred EEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcC
Confidence 4566777 789998888886542 22 556666655555555554443321 122233 3345899999999
Q ss_pred CCCEEEEEeC
Q 033469 109 GGVKFLDFCD 118 (118)
Q Consensus 109 ~g~~v~~e~~ 118 (118)
+|+.+.++++
T Consensus 91 pgd~l~i~~~ 100 (131)
T cd00493 91 PGDTLTLEVE 100 (131)
T ss_pred CCCEEEEEEE
Confidence 9999988763
No 42
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=94.72 E-value=0.14 Score=33.53 Aligned_cols=47 Identities=19% Similarity=0.060 Sum_probs=32.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 66 G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
=.+||-..++++..... ...... . .-.+++++|++|+.+|++|.++.
T Consensus 45 ~i~~G~~~~~~~~~~~~---~~~~~~-~-~i~~~~~rf~~Pv~~Gdtl~~~~ 91 (127)
T cd03453 45 VIAHGMLTMGLLGRLVT---DWVGDP-G-RVVSFGVRFTKPVPVPDTLTCTG 91 (127)
T ss_pred cEecHHHHHHHHHHHHH---HHcCCc-c-ceEEEEEEECCcCcCCCEEEEEE
Confidence 36899888888844332 222211 1 22577899999999999998875
No 43
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=94.65 E-value=0.17 Score=33.27 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 66 G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
=.+||-..++++..+..- ...++....-...+++|.+|+.+|++|.+++
T Consensus 45 ~iahG~~t~a~~~~~~~~---~~~~~~~~~~~~~~~rF~~PV~~gDtl~~~~ 93 (122)
T cd03448 45 PILHGLCTYGFAARAVLE---AFADGDPARFKAIKVRFSSPVFPGETLRTEM 93 (122)
T ss_pred ceehhHHHHHHHHHHHHH---HhcCCCcceeEEEEEEEcCCccCCCEEEEEE
Confidence 468998888877654321 1211122334566999999999999999876
No 44
>COG5496 Predicted thioesterase [General function prediction only]
Probab=94.45 E-value=0.66 Score=31.08 Aligned_cols=55 Identities=15% Similarity=0.001 Sum_probs=46.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHhCC-CCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 63 NAGNFMHGGATATLVDLVGSAAIFTVGA-PSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 63 n~~G~lHGG~i~~l~D~a~g~a~~~~~~-~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.....+--+.+..+++.++.-.+..+.+ +...+..+..++.+.|+++|..|.+.+
T Consensus 26 ~~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~ 81 (130)
T COG5496 26 GMLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGA 81 (130)
T ss_pred CccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEE
Confidence 3456677899999999999999888753 567789999999999999999998865
No 45
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=93.04 E-value=0.15 Score=33.80 Aligned_cols=49 Identities=10% Similarity=0.037 Sum_probs=29.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEE-EEEeeecCCCCCCEEEEEe
Q 033469 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVE-INVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 65 ~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~-l~i~flrp~~~g~~v~~e~ 117 (118)
.=.+||..+.+++-. +...... ........ .+++|++|+.+|++|.+++
T Consensus 53 ~~ia~G~l~~~~~~~---~~~~~~~-~~~~~~~~~~~~~f~~pv~~GDtl~~~~ 102 (146)
T cd03451 53 RRLVNSLFTLSLALG---LSVNDTS-LTAVANLGYDEVRFPAPVFHGDTLYAES 102 (146)
T ss_pred CccccHHhHHHHHhh---heehhcc-ccceeccCccEEEecCCCCCCCEEEEEE
Confidence 346888888776521 1111111 11111122 3899999999999998775
No 46
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=92.99 E-value=0.19 Score=37.06 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEeC
Q 033469 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 66 G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~~ 118 (118)
+.++||.+++.+=.++... ..++ ..-.+++++|++|+..+..+.++.+
T Consensus 21 ~~~fGG~~~Aqal~Aa~~t---v~~~--~~~~S~h~~Fl~~~~~~~pv~~~V~ 68 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKT---VPEE--FIPHSLHSYFVRAGDPKKPIIYDVE 68 (271)
T ss_pred CceEccHHHHHHHHHHHhc---CCCC--CCcceeEEEecCCCCCCCCEEEEEE
Confidence 6899999998764443333 2322 2335899999999999988877753
No 47
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=92.95 E-value=0.16 Score=34.63 Aligned_cols=50 Identities=12% Similarity=-0.078 Sum_probs=31.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCe--eeeEEEEEeeecCCCCCCEEEEEeC
Q 033469 67 FMHGGATATLVDLVGSAAIFTVGAPSV--GVSVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 67 ~lHGG~i~~l~D~a~g~a~~~~~~~~~--~vT~~l~i~flrp~~~g~~v~~e~~ 118 (118)
.+||-..++++.....-... .+... ..-...+++|++|+.+|++|.++.+
T Consensus 58 Ia~G~~t~sl~~~l~~~~~~--~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~ 109 (149)
T cd03450 58 IAHGFLTLSLLPALTPQLFR--VEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFT 109 (149)
T ss_pred EECHHHHHHHHHHHHHhccc--CCCceEEEEeeccEEEeCcceeCCcEEEEEEE
Confidence 58888888877664422111 11111 1123348999999999999998763
No 48
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=92.86 E-value=2 Score=34.80 Aligned_cols=76 Identities=9% Similarity=0.079 Sum_probs=47.7
Q ss_pred EEEecCCEEEEEEEcCCCc--cC----CCCCCcHHHHHHHHHHHHHHHHHHh-C--CCCeeeeEEE-EEeeecCCCCCCE
Q 033469 43 VDLSEPGRVICSMKVPPRL--LN----AGNFMHGGATATLVDLVGSAAIFTV-G--APSVGVSVEI-NVSYLDAAFGGVK 112 (118)
Q Consensus 43 ~~~~~~g~v~~~~~v~~~~--~n----~~G~lHGG~i~~l~D~a~g~a~~~~-~--~~~~~vT~~l-~i~flrp~~~g~~ 112 (118)
+.++++++++....++.+. .. ....++|=++.-++=.++++.+... . .+...+-..+ ++.|++|+.+|++
T Consensus 342 Il~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDt 421 (464)
T PRK13188 342 IIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDT 421 (464)
T ss_pred EeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCE
Confidence 4456677888887776653 22 3566888766655555555443322 1 1222334444 8999999999999
Q ss_pred EEEEeC
Q 033469 113 FLDFCD 118 (118)
Q Consensus 113 v~~e~~ 118 (118)
+.++++
T Consensus 422 L~I~ve 427 (464)
T PRK13188 422 LIFKVE 427 (464)
T ss_pred EEEEEE
Confidence 998763
No 49
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=92.79 E-value=1.9 Score=28.47 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=43.3
Q ss_pred EEEec-CCEEEEEEEcCCCcc---C---CCCCCcHHHHHHHHHHHHHHHH-HHhC----CCCeeeeEEE-EEeeecCCCC
Q 033469 43 VDLSE-PGRVICSMKVPPRLL---N---AGNFMHGGATATLVDLVGSAAI-FTVG----APSVGVSVEI-NVSYLDAAFG 109 (118)
Q Consensus 43 ~~~~~-~g~v~~~~~v~~~~~---n---~~G~lHGG~i~~l~D~a~g~a~-~~~~----~~~~~vT~~l-~i~flrp~~~ 109 (118)
+.+++ ++.++.+..+++++- + ....+-|=++.-++-.++++.+ .... .........+ ++.|++|+++
T Consensus 21 i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~p 100 (140)
T TIGR01750 21 ILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVP 100 (140)
T ss_pred EEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCC
Confidence 55666 467888888887653 2 1233445444444433333222 1111 1123344443 8999999999
Q ss_pred CCEEEEEe
Q 033469 110 GVKFLDFC 117 (118)
Q Consensus 110 g~~v~~e~ 117 (118)
|+++.+++
T Consensus 101 Gd~l~i~~ 108 (140)
T TIGR01750 101 GDQLILHA 108 (140)
T ss_pred CCEEEEEE
Confidence 99998765
No 50
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=92.42 E-value=0.18 Score=33.19 Aligned_cols=48 Identities=17% Similarity=0.017 Sum_probs=28.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhCC-CCe-eeeEEEEEeeecCCCCCCEEEEEe
Q 033469 67 FMHGGATATLVDLVGSAAIFTVGA-PSV-GVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 67 ~lHGG~i~~l~D~a~g~a~~~~~~-~~~-~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.+||..+++++..+. ...... ... .....-+++|++|+++|++|.++.
T Consensus 52 ia~G~~~~a~~~~~~---~~~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~ 101 (140)
T cd03446 52 IAHGLLTLSIATGLL---QRLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEA 101 (140)
T ss_pred eeccccHHHHHhhHh---hhcccccceeeEEeccceEEEcCCCCCCCEEEEEE
Confidence 688888776654332 111111 111 112223899999999999998875
No 51
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=92.03 E-value=0.42 Score=31.95 Aligned_cols=48 Identities=13% Similarity=0.013 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCeeee-EEEEEeeecCCCCCCEEEEEeC
Q 033469 67 FMHGGATATLVDLVGSAAIFTVGAPSVGVS-VEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 67 ~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT-~~l~i~flrp~~~g~~v~~e~~ 118 (118)
.+||-..++++..... ...++..... ..-+++|++|+.+|++|.++++
T Consensus 52 ia~G~l~~s~~~~l~~----~~~~~~~~~~~g~~~~rf~~PV~~GDtl~~~~~ 100 (142)
T cd03452 52 VAHGYFVLSAAAGLFV----DPAPGPVLANYGLENLRFLEPVYPGDTIQVRLT 100 (142)
T ss_pred eecHHHHHHHHhhhCc----cCCcccEEEEeccceEEECCCCCCCCEEEEEEE
Confidence 6888888887765321 1111111111 1239999999999999988763
No 52
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=90.65 E-value=3.5 Score=27.21 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=38.9
Q ss_pred EEEec-C-CE----EEEEEEcCCCcc------CCCCCCcHHHHHHHHHHHHHHH-HHHhC---CC---Ce-eeeEEEEEe
Q 033469 43 VDLSE-P-GR----VICSMKVPPRLL------NAGNFMHGGATATLVDLVGSAA-IFTVG---AP---SV-GVSVEINVS 102 (118)
Q Consensus 43 ~~~~~-~-g~----v~~~~~v~~~~~------n~~G~lHGG~i~~l~D~a~g~a-~~~~~---~~---~~-~vT~~l~i~ 102 (118)
+.+++ + +. ++.+..+.+++- .....+-|=++.-.+=.++++. ..... .. .. ....--++.
T Consensus 13 v~~v~~~g~~~~g~~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k 92 (138)
T PF07977_consen 13 VLEVDPPGGSHGGRIVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVK 92 (138)
T ss_dssp EEEEETTTTETTEEEEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEE
T ss_pred EEEEEcCCCeEEEEEEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEE
Confidence 55555 3 34 788777766543 2345666666664444444444 44321 11 11 233445899
Q ss_pred eecCCCCCC-EEEEEe
Q 033469 103 YLDAAFGGV-KFLDFC 117 (118)
Q Consensus 103 flrp~~~g~-~v~~e~ 117 (118)
|++|+.+|+ .+.+++
T Consensus 93 F~~~v~Pg~~~l~~~v 108 (138)
T PF07977_consen 93 FRGPVYPGDKTLRIEV 108 (138)
T ss_dssp E-S-B-TTE-EEEEEE
T ss_pred ECccEeCCCcEEEEEE
Confidence 999999999 888775
No 53
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=90.08 E-value=0.97 Score=29.78 Aligned_cols=20 Identities=5% Similarity=-0.074 Sum_probs=17.6
Q ss_pred EEEeeecCCCCCCEEEEEeC
Q 033469 99 INVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 99 l~i~flrp~~~g~~v~~e~~ 118 (118)
.+++|++|+.+|++|.++++
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~ 100 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVE 100 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEE
Confidence 48999999999999998763
No 54
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=89.93 E-value=1.3 Score=35.68 Aligned_cols=48 Identities=10% Similarity=-0.052 Sum_probs=33.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 66 G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
=.+||-.+++++..+.+ . ..++...+-...+++|.+|+.+|++|.++.
T Consensus 59 ~IahG~l~~s~~~~l~~---~-~~~g~~~~~~~~~~rF~~PV~~GDtl~~~~ 106 (466)
T PRK08190 59 VVAHGMWGGALISAVLG---T-RLPGPGTIYLGQSLRFRRPVRIGDTLTVTV 106 (466)
T ss_pred ceeCHHHHHHHHHHHHh---h-hCCCcceEEEEEEEEEeCCcCCCCEEEEEE
Confidence 36899888887643221 1 122223455678999999999999999875
No 55
>PLN02868 acyl-CoA thioesterase family protein
Probab=88.79 E-value=1.1 Score=35.15 Aligned_cols=70 Identities=13% Similarity=-0.024 Sum_probs=41.8
Q ss_pred CeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 40 GLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 40 g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
-+.++.++++.-+...+ +.. ...+.+|||.+++.+=.|+. .+..+. ..-.+++..|++|...+..+..+.
T Consensus 135 ~~~l~~~~~~~f~~~~~--~~~-~~~~~~fGG~~~aqal~Aa~---~~~~~~--~~~~s~~~~Fl~~~~~~~pv~~~V 204 (413)
T PLN02868 135 ILHLEPLEVDIFRGITL--PDA-PTFGKVFGGQLVGQALAAAS---KTVDPL--KLVHSLHAYFLLVGDINLPIIYQV 204 (413)
T ss_pred hcCcEeccCCeEECCcC--CCC-cccccccchHHHHHHHHHHH---ccCCCC--CCceEeeeeecCCCCCCCCEEEEE
Confidence 34455666665444433 222 23478999999997433322 223322 244688999999988776666553
No 56
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=87.34 E-value=1.8 Score=32.54 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=41.9
Q ss_pred eEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 41 LRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 41 ~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
++++.++++.-+..-. -.....++||.+++.+=.|+... ..++ ..--++++.|++|+..+..|..+.
T Consensus 12 l~l~~~~~~~f~g~~~-----~~~~r~~fGGqv~AQal~AA~~t---v~~~--~~~hSlh~~Fl~pg~~~~pi~y~V 78 (286)
T PRK10526 12 LNLEKIEEGLFRGQSE-----DLGLRQVFGGQVVGQALYAAKET---VPEE--RLVHSFHSYFLRPGDSQKPIIYDV 78 (286)
T ss_pred cCcEEccCCeEECcCC-----CCCCCceechHHHHHHHHHHHhc---CCCC--CCceEEEEEcCCCCCCCCCEEEEE
Confidence 3444556654433321 12356799999988764443333 3322 245689999999999988777654
No 57
>PLN02864 enoyl-CoA hydratase
Probab=86.07 E-value=3.2 Score=31.64 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 66 G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
=++||=..++++-.+. .....+.....-.+++++|.+|+.+|++|.++.
T Consensus 228 ~IaHGm~t~g~~~~~~---~~~~~~~~~~~~~~~~~rF~~PV~pGdtl~~~~ 276 (310)
T PLN02864 228 PILHGLCTLGFAVRAV---IKCFCNGDPTAVKTISGRFLLHVYPGETLVTEM 276 (310)
T ss_pred ceeccHHHHHHHHHHH---HhhhcCCCCceEEEEEEEEcCCccCCCEEEEEE
Confidence 4588877666544321 111122222234568999999999999998654
No 58
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=85.31 E-value=1.4 Score=30.33 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=19.6
Q ss_pred eeeEEEEEeeecCCCCCCEEEEEe
Q 033469 94 GVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 94 ~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.+-.+.+++|++|+.+||+|.++.
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~ 107 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDV 107 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEE
Confidence 344556899999999999998775
No 59
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=84.71 E-value=7.2 Score=24.65 Aligned_cols=52 Identities=15% Similarity=0.008 Sum_probs=40.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCC-----CeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 66 NFMHGGATATLVDLVGSAAIFTVGAP-----SVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 66 G~lHGG~i~~l~D~a~g~a~~~~~~~-----~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
-.+|=.+++.+.|......+....+. ....|++-+|.|.+|....+.+..++
T Consensus 15 ~~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~ 71 (104)
T cd03444 15 PRLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQ 71 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEE
Confidence 36888999999999876665544321 24679999999999999888887765
No 60
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=83.47 E-value=11 Score=25.10 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=46.7
Q ss_pred EEEEecCCEEEEEEEcCCCcc--C-CCCCCcHHHHHHHHHHHHHHHH-H-H--hC-CCCeeeeEEE-EEeeecCCCC-CC
Q 033469 42 RVDLSEPGRVICSMKVPPRLL--N-AGNFMHGGATATLVDLVGSAAI-F-T--VG-APSVGVSVEI-NVSYLDAAFG-GV 111 (118)
Q Consensus 42 ~~~~~~~g~v~~~~~v~~~~~--n-~~G~lHGG~i~~l~D~a~g~a~-~-~--~~-~~~~~vT~~l-~i~flrp~~~-g~ 111 (118)
++.+++++++++...++.+.. . ..+.+-|=.+.-.+=.+++... . . .. +.+...-+.+ +++|.+|+.+ |+
T Consensus 18 ~v~~~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd 97 (138)
T cd01289 18 RVISWDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGS 97 (138)
T ss_pred EEEEEcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCC
Confidence 355677888888877776432 2 3356666665555555544433 2 1 11 2233343443 8999999755 99
Q ss_pred EEEEEeC
Q 033469 112 KFLDFCD 118 (118)
Q Consensus 112 ~v~~e~~ 118 (118)
.++++++
T Consensus 98 ~l~i~~~ 104 (138)
T cd01289 98 TLLIVVA 104 (138)
T ss_pred eeEEEee
Confidence 9998763
No 61
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=82.65 E-value=13 Score=27.23 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=43.1
Q ss_pred EEEEEEcCCCccCCCCCCcHHHHHHHHHHH-HHHHHHHhCC-C---CeeeeEEEEEeeecCCCCCCEEEEEeC
Q 033469 51 VICSMKVPPRLLNAGNFMHGGATATLVDLV-GSAAIFTVGA-P---SVGVSVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 51 v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a-~g~a~~~~~~-~---~~~vT~~l~i~flrp~~~g~~v~~e~~ 118 (118)
...-+..++.... .-.+|=-.++.++|.. ...+...+.. . ....++|.+|.|+++.+.++++..+++
T Consensus 167 ~~~W~R~~~~l~~-d~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l~~~~ 238 (271)
T TIGR00189 167 QYVWRRARGSLPD-DPRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLLYKCS 238 (271)
T ss_pred EEEEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEEEEEE
Confidence 4444444433322 2345778999999983 2333443331 1 234689999999999999999998763
No 62
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=80.17 E-value=16 Score=24.87 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=43.9
Q ss_pred CEEEEEEEcCCC--ccC----CCCCCcHHHHHHHHHHHHHHHHHHhCC-------CCeee-eEEEEEeeecCCCCCC-EE
Q 033469 49 GRVICSMKVPPR--LLN----AGNFMHGGATATLVDLVGSAAIFTVGA-------PSVGV-SVEINVSYLDAAFGGV-KF 113 (118)
Q Consensus 49 g~v~~~~~v~~~--~~n----~~G~lHGG~i~~l~D~a~g~a~~~~~~-------~~~~v-T~~l~i~flrp~~~g~-~v 113 (118)
++++.+..++++ +.. ....+-|=.+.-.+=.++++.+..... ....+ ..--++.|.+++.+|+ .+
T Consensus 27 g~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l 106 (150)
T cd01287 27 GYLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKV 106 (150)
T ss_pred cEEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEE
Confidence 468888777765 334 456677777666666666655443221 11122 2333799999999998 78
Q ss_pred EEEeC
Q 033469 114 LDFCD 118 (118)
Q Consensus 114 ~~e~~ 118 (118)
.++++
T Consensus 107 ~~e~~ 111 (150)
T cd01287 107 TYEVH 111 (150)
T ss_pred EEEEE
Confidence 88764
No 63
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=79.62 E-value=1.6 Score=29.83 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=17.0
Q ss_pred EEEeeecCCCCCCEEEEEe
Q 033469 99 INVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 99 l~i~flrp~~~g~~v~~e~ 117 (118)
-+++|.+|+.+|++|.++.
T Consensus 99 ~~vRF~~PV~~Gdtl~~~~ 117 (159)
T COG2030 99 DEVRFVKPVFPGDTLRARV 117 (159)
T ss_pred cceEecCCCCCCCEEEEEE
Confidence 4899999999999999875
No 64
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=79.24 E-value=2.6 Score=29.24 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=18.4
Q ss_pred eEEEEEeeecCCCCCCEEEEEe
Q 033469 96 SVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 96 T~~l~i~flrp~~~g~~v~~e~ 117 (118)
-.+-++.|++|+..||+|.++.
T Consensus 86 ~~~q~~~f~rPV~~GDtL~~~~ 107 (166)
T PRK13691 86 QVDQRFVFHKPVLAGDKLWARM 107 (166)
T ss_pred eeeeEEEEeCCcCCCCEEEEEE
Confidence 3455888999999999999876
No 65
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=77.16 E-value=3.6 Score=26.65 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=20.2
Q ss_pred CeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 92 SVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 92 ~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
...+-.+.++.|.+|+++|++|.+++
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~ 98 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATS 98 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEE
Confidence 34566788999999999999999876
No 66
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=75.40 E-value=11 Score=29.61 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=43.2
Q ss_pred cCCCccCCCCCCcHH-HHHHHHHHHHHHHHHHhCC------C--CeeeeEEE-EEeeecCCCCCC
Q 033469 57 VPPRLLNAGNFMHGG-ATATLVDLVGSAAIFTVGA------P--SVGVSVEI-NVSYLDAAFGGV 111 (118)
Q Consensus 57 v~~~~~n~~G~lHGG-~i~~l~D~a~g~a~~~~~~------~--~~~vT~~l-~i~flrp~~~g~ 111 (118)
+.|.+.|..|..++| -+.-|+|++..+|.+.+.. . ...||++. .|+|.+|...|+
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~ 79 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQ 79 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccc
Confidence 667778899999999 6999999999888765431 1 44678776 699999887773
No 67
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=75.04 E-value=12 Score=24.96 Aligned_cols=48 Identities=21% Similarity=0.098 Sum_probs=29.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCC-C----EEEEEe
Q 033469 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-V----KFLDFC 117 (118)
Q Consensus 65 ~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g-~----~v~~e~ 117 (118)
.=++||-..++++-.+..- + ... ...+ .+++++|.+|+..| + ++.+++
T Consensus 54 ~~iahG~~~~a~~~~~~~~--~-~~~-~~~~-~~~~~rF~~pv~~g~D~~~~~l~~~~ 106 (142)
T PRK13693 54 TAIAHGMLTMGLGGGYVTS--W-VGD-PGAV-TEYNVRFTAVVPVPNDGKGAELVFNG 106 (142)
T ss_pred CcEecHHHHHHHHHHHHHH--h-cCC-Ccce-EEEEEEecccEECCCCccceEEEEEE
Confidence 3468999998887764322 1 221 1123 36899999999854 4 665543
No 68
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=73.58 E-value=5.2 Score=33.71 Aligned_cols=48 Identities=13% Similarity=-0.109 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCeee-eEEEEEeeecCCCCCCEEEEEeC
Q 033469 67 FMHGGATATLVDLVGSAAIFTVGAPSVGV-SVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 67 ~lHGG~i~~l~D~a~g~a~~~~~~~~~~v-T~~l~i~flrp~~~g~~v~~e~~ 118 (118)
.+||-..++++..... . ........ ...-+++|++|+.+||+|.++++
T Consensus 575 Ia~G~l~~sl~~~l~~---~-~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~ 623 (663)
T TIGR02278 575 VAHGYFVLSAAAGLFV---D-PAPGPVLANYGLENLRFLEPVGPGDTIQVRLT 623 (663)
T ss_pred eeCHHHHHHHHHHHhh---c-cCccchhhhcccceEEEcCCCCCCCEEEEEEE
Confidence 6888888888744321 1 11111111 12248999999999999988763
No 69
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=69.28 E-value=23 Score=26.53 Aligned_cols=53 Identities=11% Similarity=-0.083 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHHHHH-HHHHHHHhCC-----CCeeeeEEEEEeeecCCCCCCEEEEEeC
Q 033469 66 NFMHGGATATLVDLV-GSAAIFTVGA-----PSVGVSVEINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 66 G~lHGG~i~~l~D~a-~g~a~~~~~~-----~~~~vT~~l~i~flrp~~~g~~v~~e~~ 118 (118)
-.+|=-+++-+.|.- ...++..+.. .....++|-+|.|++|.+.++++..+++
T Consensus 192 ~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~~ 250 (286)
T PRK10526 192 LRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLYSVE 250 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEEEEE
Confidence 358888999888854 4455554432 2335688889999999999999987753
No 70
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=64.40 E-value=16 Score=22.20 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.9
Q ss_pred eeeEEEEEeeecCCCCCCEEEEEe
Q 033469 94 GVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 94 ~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.++...++.++.++++|+.|.+.+
T Consensus 23 G~~~~v~l~lv~~~~vGD~VLVH~ 46 (76)
T TIGR00074 23 GIKRDVSLDLVGEVKVGDYVLVHV 46 (76)
T ss_pred CeEEEEEEEeeCCCCCCCEEEEec
Confidence 477788999999999999999875
No 71
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=62.91 E-value=19 Score=24.54 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=41.3
Q ss_pred EEEE-ecCC-EEEEEEEcCC--CccC---CCCCCcHHHHHHHH-HHHHHHHHHHhCC--CCee-eeEEEEEeeecCCCCC
Q 033469 42 RVDL-SEPG-RVICSMKVPP--RLLN---AGNFMHGGATATLV-DLVGSAAIFTVGA--PSVG-VSVEINVSYLDAAFGG 110 (118)
Q Consensus 42 ~~~~-~~~g-~v~~~~~v~~--~~~n---~~G~lHGG~i~~l~-D~a~g~a~~~~~~--~~~~-vT~~l~i~flrp~~~g 110 (118)
++.+ .+++ .+.....+++ .+.+ +..-+-.|++..=+ =.+++..+..... .+.. ...--++.|.+|+.+|
T Consensus 24 rv~~~~~~g~~i~a~k~Vt~nepfF~gHFP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PG 103 (147)
T COG0764 24 RVLEIDEEGKRIVAIKNVTINEPFFTGHFPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPG 103 (147)
T ss_pred eeeeeccCCcEEEEEEccCCCCCeeCCcCCCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCC
Confidence 3444 3333 5656666544 3333 44556777764332 1222233222222 1122 2333389999999999
Q ss_pred CEEEEEeC
Q 033469 111 VKFLDFCD 118 (118)
Q Consensus 111 ~~v~~e~~ 118 (118)
+.+.++++
T Consensus 104 d~l~l~~~ 111 (147)
T COG0764 104 DQLELEVK 111 (147)
T ss_pred CEEEEEEE
Confidence 99988763
No 72
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=59.53 E-value=11 Score=27.03 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=38.3
Q ss_pred CEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCC--CeeeeEEEEEee-ecCCCCCCEEEEEe
Q 033469 49 GRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAP--SVGVSVEINVSY-LDAAFGGVKFLDFC 117 (118)
Q Consensus 49 g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~--~~~vT~~l~i~f-lrp~~~g~~v~~e~ 117 (118)
+....-+...+...+ + +=-.++.++|............. ...+|++++|.| ..|...++++.+++
T Consensus 155 ~~~~~W~R~~~~~~~--~--~~~~l~~~~D~~~~~~~~~~~~~~~~~~~tld~ti~f~~~p~~~~~Wl~~~~ 222 (255)
T PF13622_consen 155 PELRGWIRLRDPLPD--G--DFAALAFLSDAFPPATLRAFSGPEWWFPATLDHTIHFHRLPFDGDEWLLLEA 222 (255)
T ss_dssp SEEEEEEEESTTT-C--T--HHHHHHHHCTCCHHHHHHCHTSS--B-EEEEEEEEEECSHCCTTTS-EEEEE
T ss_pred ceEEEEEEeCCCccc--c--hHHHHHHHHHhcchhhccccCCccccccccceeEEEEEeCCccCCceEEEEE
Confidence 345556666555443 1 21138888888844444433322 345699999997 55766788988876
No 73
>PLN02370 acyl-ACP thioesterase
Probab=57.95 E-value=98 Score=24.88 Aligned_cols=67 Identities=9% Similarity=-0.103 Sum_probs=51.3
Q ss_pred EEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhC--------------CCCeeeeEEEEEeeecCCCCCCEEEEE
Q 033469 51 VICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------------APSVGVSVEINVSYLDAAFGGVKFLDF 116 (118)
Q Consensus 51 v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~--------------~~~~~vT~~l~i~flrp~~~g~~v~~e 116 (118)
.+-.+.++-..++..|.+.=..++.++-.++..-+...+ .+..-|-....|+|.||.+-|++|.|+
T Consensus 140 y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~ 219 (419)
T PLN02370 140 FRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVD 219 (419)
T ss_pred EEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEE
Confidence 466788888889999999988888888766665543322 122346788999999999999999987
Q ss_pred e
Q 033469 117 C 117 (118)
Q Consensus 117 ~ 117 (118)
.
T Consensus 220 T 220 (419)
T PLN02370 220 T 220 (419)
T ss_pred E
Confidence 5
No 74
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=55.55 E-value=31 Score=26.36 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=45.3
Q ss_pred eEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEE
Q 033469 41 LRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLD 115 (118)
Q Consensus 41 ~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~ 115 (118)
++++.++++--+.+-..... .++.+.+.||.+++=+ ..+|..++.. ..+--+++..|++...+...|.-
T Consensus 14 l~l~~lD~n~f~~~~l~~g~-~~~~~~~fGG~i~sQa---LaAA~~TV~e--~f~p~SlH~YFI~~gd~~~pI~Y 82 (294)
T KOG3016|consen 14 LNLERLDKNLYLTRHLPKGR-EIPSNHAYGGQIASQA---LAAASKTVEE--MFIPHSLHCYFILVGDPNIPIIY 82 (294)
T ss_pred heeeecCCCceecccCCccc-cccCcccccceehHHH---HHHHHhcccc--ccccceeeeeeeecCCCCCceEE
Confidence 45667777766665554333 4788899999887743 3334444443 34667888999988877776653
No 75
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=46.30 E-value=18 Score=30.54 Aligned_cols=48 Identities=13% Similarity=-0.080 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCeeeeE-EEEEeeecCCCCCCEEEEEeC
Q 033469 67 FMHGGATATLVDLVGSAAIFTVGAPSVGVSV-EINVSYLDAAFGGVKFLDFCD 118 (118)
Q Consensus 67 ~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~-~l~i~flrp~~~g~~v~~e~~ 118 (118)
.+||-..++++-.... . ..+....... --+++|++|+.+|++|.++.+
T Consensus 587 ia~G~l~~sl~~~l~~---~-~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~ 635 (675)
T PRK11563 587 VAHGYFVLSAAAGLFV---D-PAPGPVLANYGLENLRFLTPVKPGDTIQVRLT 635 (675)
T ss_pred eeCHHHHHHHHHHHhh---c-cCccchhhhcccceEEEcCCCCCCCEEEEEEE
Confidence 5788877776554321 0 1111111111 127999999999999988753
No 76
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=45.23 E-value=1e+02 Score=21.41 Aligned_cols=68 Identities=10% Similarity=-0.010 Sum_probs=38.1
Q ss_pred EEEEEEEcCCCcc---CC---CCCCcHHHHHHHHHHHHHHHHHHhCC-CCeeeeEEEEEeeecCCCCCCE-EEEEe
Q 033469 50 RVICSMKVPPRLL---NA---GNFMHGGATATLVDLVGSAAIFTVGA-PSVGVSVEINVSYLDAAFGGVK-FLDFC 117 (118)
Q Consensus 50 ~v~~~~~v~~~~~---n~---~G~lHGG~i~~l~D~a~g~a~~~~~~-~~~~vT~~l~i~flrp~~~g~~-v~~e~ 117 (118)
.++.+..++++.- ++ ...+-|=++.-.+=.++++.+..... ....+...-+..|.+++.+|+. +.+++
T Consensus 54 ~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v 129 (172)
T PRK05174 54 YIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEI 129 (172)
T ss_pred EEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEE
Confidence 6888888887542 22 23355555554444444444332221 1122333347999999999987 55543
No 77
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=44.03 E-value=12 Score=27.20 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=39.3
Q ss_pred EEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCC--CCCEEEEE
Q 033469 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAF--GGVKFLDF 116 (118)
Q Consensus 55 ~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~--~g~~v~~e 116 (118)
...+|...=..|+-|||.....++.++.. +....++++++++.-+.|.- .-+...+|
T Consensus 66 w~~~P~lvIE~Gs~~GGSal~fA~~m~s~-----Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~e 124 (237)
T COG3510 66 WELQPSLVIEFGSRHGGSALFFANMMISI-----GQPFKVLGVDIDIKPLDPAAREVPDILFIE 124 (237)
T ss_pred HhcCCceeEeeccccCchhhhhhHhHHhc-----CCCceEEEEecccCcCChhhhcCCCeEEEe
Confidence 44567777778999999999999844332 23457889999988877653 33444444
No 78
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=43.09 E-value=20 Score=21.15 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=18.0
Q ss_pred eeEEEEEeeecCCCCCCEEEEEe
Q 033469 95 VSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 95 vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
...+.++.++.++++|+.|.+++
T Consensus 26 ~~~~V~~~lv~~v~~Gd~VLVHa 48 (68)
T PF01455_consen 26 VRREVSLALVPDVKVGDYVLVHA 48 (68)
T ss_dssp EEEEEEGTTCTSB-TT-EEEEET
T ss_pred cEEEEEEEEeCCCCCCCEEEEec
Confidence 56778899999999999999875
No 79
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=36.94 E-value=70 Score=20.06 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.5
Q ss_pred eeeeEEEEEeeec------CCCCCCEEEEEe
Q 033469 93 VGVSVEINVSYLD------AAFGGVKFLDFC 117 (118)
Q Consensus 93 ~~vT~~l~i~flr------p~~~g~~v~~e~ 117 (118)
..++.+.++.++- ++++|+.|++++
T Consensus 22 ~Gv~reV~l~Lv~~~~~~~~~~vGDyVLVHa 52 (90)
T PRK10409 22 CGIQRDVDLTLVGSCDENGQPRVGQWVLVHV 52 (90)
T ss_pred CCeEEEEEEeeecccCCCCccCCCCEEEEec
Confidence 3477788999995 689999999875
No 80
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=36.69 E-value=43 Score=19.03 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=22.4
Q ss_pred EEEEEEcCCCc--cCCCCCCcHHHHHHHHHHH
Q 033469 51 VICSMKVPPRL--LNAGNFMHGGATATLVDLV 80 (118)
Q Consensus 51 v~~~~~v~~~~--~n~~G~lHGG~i~~l~D~a 80 (118)
+++..|+.+.. ....|.+|+|+-+..++.-
T Consensus 5 vVCKqpi~~a~~v~T~~G~VH~g~C~~y~~e~ 36 (54)
T PF10886_consen 5 VVCKQPIDDALVVETESGPVHPGVCAQYLEEL 36 (54)
T ss_pred eeeCCccCcceEEEcCCCccCcHHHHHHHHhc
Confidence 45667776643 3579999999998888764
No 81
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=36.64 E-value=72 Score=21.46 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHHHHHHHH-HHHhC--CCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 67 FMHGGATATLVDLVGSAA-IFTVG--APSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 67 ~lHGG~i~~l~D~a~g~a-~~~~~--~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.+|-=+++-+.|...-.. ...++ .....+|+|-+|-|+||.+.++++..+.
T Consensus 45 ~~h~~~laY~SD~~~L~tal~~H~~~~~~~~vSlDHs~wFHrpfr~ddWlLY~~ 98 (131)
T PF02551_consen 45 RIHSCALAYASDFTLLDTALQPHGFGFPKFQVSLDHSMWFHRPFRADDWLLYAI 98 (131)
T ss_dssp CCCCCHHHHHCCCCCGGGGGCCGCCCCCCEEEEEEEEEEE-S--BTTS-EEEEE
T ss_pred hHhHHHHHHHhHHhHHHhhhccccccccccEEecceeEEEcCCCCCCCCEEEEE
Confidence 345555555555533222 22233 1234459999999999999999998654
No 82
>PLN02868 acyl-CoA thioesterase family protein
Probab=35.53 E-value=1.1e+02 Score=24.01 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=37.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHH-HhCC-CCe--eeeEEEEEeeecCCCCCCEEEEEe
Q 033469 66 NFMHGGATATLVDLVGSAAIF-TVGA-PSV--GVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 66 G~lHGG~i~~l~D~a~g~a~~-~~~~-~~~--~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
-.+|-.+++.+.|...-..+. .+.. ... .++++-+|.|++|+..++++..+.
T Consensus 325 ~~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~ 380 (413)
T PLN02868 325 QALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVI 380 (413)
T ss_pred HHHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEE
Confidence 357888999999976544433 3221 222 467888999999999999998775
No 83
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=32.27 E-value=90 Score=23.28 Aligned_cols=58 Identities=9% Similarity=0.082 Sum_probs=39.2
Q ss_pred EEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEE
Q 033469 54 SMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDF 116 (118)
Q Consensus 54 ~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e 116 (118)
.|+++=.....+|.+.--..-+++...+++-....- -...+++.|.+|+..|+.|.+-
T Consensus 156 ~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~-----~p~r~~l~y~keva~G~~iti~ 213 (250)
T COG3884 156 DFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLY-----GPLRLTLEYVKEVAPGEKITIV 213 (250)
T ss_pred cceeEEEeeccccccccceehHHHHHHHhhhhHhhc-----ccceeEEEEEcccCCCCeEEEE
Confidence 445544445566666666777777777765554432 1256789999999999998864
No 84
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=29.87 E-value=43 Score=16.62 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=7.8
Q ss_pred ChHHHHHHHHc
Q 033469 2 ELESVKRYLEK 12 (118)
Q Consensus 2 ~~e~~~~~l~~ 12 (118)
+.|++++||+.
T Consensus 18 s~eeir~FL~~ 28 (30)
T PF08671_consen 18 SKEEIREFLEF 28 (30)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 57888888863
No 85
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=29.84 E-value=39 Score=24.47 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=25.0
Q ss_pred EcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeee
Q 033469 56 KVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYL 104 (118)
Q Consensus 56 ~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~fl 104 (118)
.++|+..=..|+.|||.+.-++|....+ +....++++|+.++-.
T Consensus 30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~-----~~~~~VigiDIdir~~ 73 (206)
T PF04989_consen 30 ELKPDLIIETGIAHGGSLIFWASMLELL-----GGKGKVIGIDIDIRPH 73 (206)
T ss_dssp HH--SEEEEE--TTSHHHHHHHHHHHHT-----T---EEEEEES-GTT-
T ss_pred HhCCCeEEEEecCCCchHHHHHHHHHHh-----CCCceEEEEeCCcchh
Confidence 3455555567999999999888854333 3334678888876554
No 86
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=28.55 E-value=1.2e+02 Score=23.13 Aligned_cols=50 Identities=14% Similarity=-0.053 Sum_probs=36.4
Q ss_pred CCcHHHHHHHHHHHHHHHH-HHhC-----CCCeeeeEEEEEeeecCCCCCCEEEEE
Q 033469 67 FMHGGATATLVDLVGSAAI-FTVG-----APSVGVSVEINVSYLDAAFGGVKFLDF 116 (118)
Q Consensus 67 ~lHGG~i~~l~D~a~g~a~-~~~~-----~~~~~vT~~l~i~flrp~~~g~~v~~e 116 (118)
.+|--.++-+.|...-..+ ..++ +....+++|-++-|+||.+.++++.-.
T Consensus 193 ~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~ 248 (289)
T COG1946 193 RLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYA 248 (289)
T ss_pred HHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEEE
Confidence 5677777777787644333 3344 245568999999999999999998754
No 87
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=28.41 E-value=61 Score=24.25 Aligned_cols=44 Identities=18% Similarity=0.096 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEE
Q 033469 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLD 115 (118)
Q Consensus 66 G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~ 115 (118)
-.+||=...++.--+++.. -+ +.+-.+.+++|-+|+-+|++|..
T Consensus 192 pilHGlc~lg~~~riv~a~----~~--~a~y~~~kvrF~spV~pGdtll~ 235 (272)
T KOG1206|consen 192 PILHGLCTLGFSARIVGAQ----FP--PAVYKAQKVRFSSPVGPGDTLLV 235 (272)
T ss_pred chhhhHHHhhhhHHHHHHh----cC--chhhheeeeeecCCCCCchhHHH
Confidence 4589977666554433322 22 34567889999999999997653
No 88
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=27.08 E-value=2.2e+02 Score=19.71 Aligned_cols=67 Identities=12% Similarity=-0.042 Sum_probs=37.7
Q ss_pred EEEEEEEcCCCcc---C---CCCCCcHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEeeecCCCCCCEE-EEE
Q 033469 50 RVICSMKVPPRLL---N---AGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGVKF-LDF 116 (118)
Q Consensus 50 ~v~~~~~v~~~~~---n---~~G~lHGG~i~~l~D~a~g~a~~~~~-~~~~~vT~~l~i~flrp~~~g~~v-~~e 116 (118)
.++.+..++++.- + ....+-|=++.-.+=.++++.+.... .........-+..|.+++.+|+.+ .++
T Consensus 51 ~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~ 125 (169)
T TIGR01749 51 YVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYR 125 (169)
T ss_pred EEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEE
Confidence 6888888877542 2 22335555555555555444433222 122223222389999999999875 444
No 89
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=27.07 E-value=43 Score=19.18 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=10.5
Q ss_pred CChHHHHHHHHcCC
Q 033469 1 MELESVKRYLEKGG 14 (118)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (118)
|+.+.|++||....
T Consensus 37 ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 37 MSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhc
Confidence 78899999998765
No 90
>TIGR00541 hisDCase_pyru histidine decarboxylase, pyruvoyl type. This enzyme converts histadine to histamine in a single step by catalyzing the release of CO2. This type is synthesized as an inactive single chain precursor, then cleaved into two chains. The Ser at the new N-terminus at the cleavage site is converted to a pyruvoyl group essential for activity. This type of histidine decarboxylase appears is known so far only in some Gram-positive bacteria, where it may play a role in amino acid catabolism. There is also a pyridoxal phosphate type histidine decarboxylase, as found in human, where histamine is a biologically active amine.
Probab=26.92 E-value=5.6 Score=30.08 Aligned_cols=69 Identities=25% Similarity=0.319 Sum_probs=48.5
Q ss_pred hHHHHHHHHcCCCCCCCCCCcc--ccCCCchhhhhhhhcCeEEEEecCCEEEEEEEcCCCccCCCCCCcHHHHHH
Q 033469 3 LESVKRYLEKGGGGDDDKNKST--MEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATAT 75 (118)
Q Consensus 3 ~e~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~g~v~~~~~v~~~~~n~~G~lHGG~i~~ 75 (118)
+|++++||+..+. .-..|. +-+-+.-.|++. ..|+......+|++-..+.+.|...=+...+-||-|.+
T Consensus 209 eedl~~~L~~~rk---~va~Si~~CG~Dq~v~y~~~-~Ig~ay~~m~PGqIG~Ait~aPYvtla~nAvP~g~i~~ 279 (310)
T TIGR00541 209 EDDLKEFLEDHRK---AMAKSIAECGQDAHASFERS-WIGFAYTIMEPGEIGNAITCAPYVSLAIDAIPGGSILT 279 (310)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhcCCcCeeEEEE-EEEEEEEEccCccccceeeecccEEehhhccCCccccC
Confidence 5788899988762 111111 112334456665 57999999999999999999999887888887776654
No 91
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.78 E-value=1.2e+02 Score=20.34 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=17.6
Q ss_pred eEEEEEeeecCCCCCCEEEEE
Q 033469 96 SVEINVSYLDAAFGGVKFLDF 116 (118)
Q Consensus 96 T~~l~i~flrp~~~g~~v~~e 116 (118)
+-.++|.|=.|+++|+++.|.
T Consensus 88 ~~~i~I~f~~PV~pG~tv~V~ 108 (146)
T PF10989_consen 88 GRTITITFDEPVPPGTTVTVV 108 (146)
T ss_pred CCEEEEEeCCCCCCCCEEEEE
Confidence 345789999999999999875
No 92
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=22.06 E-value=60 Score=20.51 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=13.4
Q ss_pred CChHHHHHHHHcCCC
Q 033469 1 MELESVKRYLEKGGG 15 (118)
Q Consensus 1 ~~~e~~~~~l~~~~~ 15 (118)
|++.++++||+....
T Consensus 8 Mt~~EL~~WL~t~~S 22 (92)
T PF11338_consen 8 MTPAELEDWLRTDES 22 (92)
T ss_pred CCHHHHHHHHcCccc
Confidence 899999999998774
No 93
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=22.03 E-value=1.8e+02 Score=17.79 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=18.6
Q ss_pred eeeEEEEEeeec----CCCCCCEEEEEe
Q 033469 94 GVSVEINVSYLD----AAFGGVKFLDFC 117 (118)
Q Consensus 94 ~vT~~l~i~flr----p~~~g~~v~~e~ 117 (118)
.++.+.++.++. ++++|+.|++++
T Consensus 26 Gv~r~V~l~Lv~~~~~~~~vGDyVLVHa 53 (82)
T PRK10413 26 GIKRDVNIALICEGNPADLLGQWVLVHV 53 (82)
T ss_pred CeEEEEEeeeeccCCcccccCCEEEEec
Confidence 467778888884 367899999875
No 94
>PLN02370 acyl-ACP thioesterase
Probab=21.94 E-value=3.2e+02 Score=21.97 Aligned_cols=63 Identities=6% Similarity=-0.041 Sum_probs=45.6
Q ss_pred EEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEeeecCCCCCCEEEEEe
Q 033469 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKFLDFC 117 (118)
Q Consensus 50 ~v~~~~~v~~~~~n~~G~lHGG~i~~l~D~a~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~v~~e~ 117 (118)
.....++++...+..+|.|.-..+..++-++...-... ...-.+++|+|.+.+..|+.|...+
T Consensus 301 ~~~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l~-----~~~l~~i~I~Y~kE~~~gd~V~s~~ 363 (419)
T PLN02370 301 YIRKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIME-----SHELAAITLEYRRECGRDSVLQSLT 363 (419)
T ss_pred ceeeeeeecHHHCcccCccccHHHHHHHHhhCchhhhh-----cceEEEEEEEEcccCCCCCEEEEEE
Confidence 34555788888888889999888888775544433221 2245678999999999999998643
No 95
>COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase [Lipid metabolism]
Probab=21.46 E-value=2.9e+02 Score=19.16 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=31.0
Q ss_pred EEEEecCCEEEEEEEcCCC---ccCCCCCCcHHHHHHHHHHHHHH
Q 033469 42 RVDLSEPGRVICSMKVPPR---LLNAGNFMHGGATATLVDLVGSA 83 (118)
Q Consensus 42 ~~~~~~~g~v~~~~~v~~~---~~n~~G~lHGG~i~~l~D~a~g~ 83 (118)
+++.|+++.++++..+.|. ...+.|.+-+=+---++-.+++.
T Consensus 27 ~VvtwdDd~~rc~atvsp~~a~~l~~dg~Lpa~~gIElmAQAv~v 71 (161)
T COG4706 27 DVVTWDDDSARCRATVSPSGAPFLDPDGNLPAWFGIELMAQAVGV 71 (161)
T ss_pred eeeeecCCeEEEEeEeCCCCCCccCcCCCcchhhhHHHHHHHHHH
Confidence 5677899999999999886 44677887776666666555543
No 96
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=20.73 E-value=63 Score=15.68 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=8.7
Q ss_pred HHHHHHHHcCC
Q 033469 4 ESVKRYLEKGG 14 (118)
Q Consensus 4 e~~~~~l~~~~ 14 (118)
.++|+|||+..
T Consensus 6 ~SLqRFLeKRK 16 (27)
T PF09425_consen 6 ASLQRFLEKRK 16 (27)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHHH
Confidence 57899999887
Done!