Query 033470
Match_columns 118
No_of_seqs 111 out of 670
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:38:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01814 NTGP5 Ubiquitin-like N 100.0 2.2E-34 4.8E-39 200.5 8.6 113 3-115 1-113 (113)
2 PF13881 Rad60-SLD_2: Ubiquiti 100.0 2E-32 4.4E-37 191.0 11.2 111 5-116 1-111 (111)
3 cd01807 GDX_N ubiquitin-like d 99.8 4.7E-21 1E-25 123.6 7.7 73 7-93 1-73 (74)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 6.4E-21 1.4E-25 123.0 7.7 74 7-96 1-74 (74)
5 cd01802 AN1_N ubiquitin-like d 99.8 2.2E-20 4.8E-25 128.6 8.5 79 4-96 25-103 (103)
6 cd01790 Herp_N Homocysteine-re 99.8 1.2E-20 2.7E-25 124.6 6.9 75 6-91 1-78 (79)
7 cd01797 NIRF_N amino-terminal 99.8 2.7E-20 5.8E-25 122.1 7.3 75 7-95 1-77 (78)
8 PTZ00044 ubiquitin; Provisiona 99.8 4.2E-20 9.1E-25 119.0 7.6 76 7-96 1-76 (76)
9 cd01810 ISG15_repeat2 ISG15 ub 99.8 6.8E-20 1.5E-24 118.2 7.1 74 9-96 1-74 (74)
10 cd01794 DC_UbP_C dendritic cel 99.8 1.1E-19 2.3E-24 117.1 6.6 69 9-91 1-69 (70)
11 cd01798 parkin_N amino-termina 99.8 1.6E-19 3.4E-24 115.2 6.9 70 9-92 1-70 (70)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 3.5E-19 7.7E-24 115.7 7.7 71 7-91 2-72 (73)
13 cd01806 Nedd8 Nebb8-like ubiq 99.8 6.5E-19 1.4E-23 112.7 8.1 75 7-95 1-75 (76)
14 cd01803 Ubiquitin Ubiquitin. U 99.8 6.6E-19 1.4E-23 112.6 7.6 76 7-96 1-76 (76)
15 cd01804 midnolin_N Ubiquitin-l 99.8 1.2E-18 2.6E-23 114.0 8.1 75 6-95 1-75 (78)
16 cd01808 hPLIC_N Ubiquitin-like 99.8 1.3E-18 2.9E-23 111.3 7.3 71 7-92 1-71 (71)
17 cd01805 RAD23_N Ubiquitin-like 99.8 2.9E-18 6.2E-23 110.5 8.0 73 7-93 1-75 (77)
18 cd01792 ISG15_repeat1 ISG15 ub 99.8 2.2E-18 4.7E-23 112.9 7.1 74 7-94 3-78 (80)
19 cd01809 Scythe_N Ubiquitin-lik 99.8 3.2E-18 6.8E-23 108.4 7.5 72 7-92 1-72 (72)
20 cd01800 SF3a120_C Ubiquitin-li 99.7 7.7E-18 1.7E-22 109.3 6.5 71 14-98 5-75 (76)
21 PF00240 ubiquitin: Ubiquitin 99.7 1.3E-17 2.7E-22 105.3 7.0 68 12-93 1-68 (69)
22 KOG0004 Ubiquitin/40S ribosoma 99.7 4.4E-18 9.5E-23 124.2 4.8 83 7-103 1-83 (156)
23 cd01796 DDI1_N DNA damage indu 99.7 1.9E-17 4.1E-22 106.4 6.4 67 9-89 1-69 (71)
24 KOG0005 Ubiquitin-like protein 99.7 1E-17 2.2E-22 105.5 4.0 70 7-90 1-70 (70)
25 KOG0003 Ubiquitin/60s ribosoma 99.7 4.7E-18 1E-22 118.1 0.9 77 7-97 1-77 (128)
26 cd01763 Sumo Small ubiquitin-r 99.7 8.1E-16 1.8E-20 102.4 9.0 80 3-96 8-87 (87)
27 cd01812 BAG1_N Ubiquitin-like 99.7 3.9E-16 8.4E-21 98.8 6.7 69 7-90 1-69 (71)
28 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 2.4E-16 5.1E-21 103.2 5.1 57 25-91 18-74 (75)
29 TIGR00601 rad23 UV excision re 99.6 1.3E-15 2.9E-20 125.0 8.2 76 7-93 1-76 (378)
30 cd01813 UBP_N UBP ubiquitin pr 99.6 2.9E-15 6.2E-20 97.3 6.6 69 7-90 1-72 (74)
31 KOG0010 Ubiquitin-like protein 99.6 6.7E-15 1.5E-19 123.2 6.7 76 6-96 15-90 (493)
32 smart00213 UBQ Ubiquitin homol 99.5 2.2E-14 4.7E-19 88.1 6.0 64 7-79 1-64 (64)
33 KOG0011 Nucleotide excision re 99.5 9.1E-14 2E-18 111.8 7.0 67 7-79 1-67 (340)
34 cd01799 Hoil1_N Ubiquitin-like 99.5 1.8E-13 3.9E-18 89.2 6.8 69 8-91 4-74 (75)
35 cd01769 UBL Ubiquitin-like dom 99.4 2.1E-12 4.6E-17 80.1 6.8 67 11-91 2-68 (69)
36 PF11976 Rad60-SLD: Ubiquitin- 99.2 2E-11 4.3E-16 77.6 5.6 71 7-91 1-72 (72)
37 KOG4248 Ubiquitin-like protein 99.2 3.1E-11 6.7E-16 108.1 6.2 75 7-96 3-77 (1143)
38 cd01789 Alp11_N Ubiquitin-like 99.1 6.4E-10 1.4E-14 73.6 8.0 72 7-91 2-80 (84)
39 KOG0001 Ubiquitin and ubiquiti 99.1 1.3E-09 2.7E-14 66.8 8.7 72 9-94 2-73 (75)
40 cd01795 USP48_C USP ubiquitin- 99.1 3.1E-10 6.7E-15 78.1 5.7 60 21-93 18-78 (107)
41 cd01801 Tsc13_N Ubiquitin-like 98.9 6.5E-09 1.4E-13 67.4 5.6 70 8-89 2-74 (77)
42 PLN02560 enoyl-CoA reductase 98.8 9.2E-09 2E-13 82.7 7.1 77 7-97 1-86 (308)
43 PF10302 DUF2407: DUF2407 ubiq 98.8 1.1E-08 2.5E-13 69.8 5.7 59 9-73 3-64 (97)
44 cd01788 ElonginB Ubiquitin-lik 98.8 2.7E-08 5.9E-13 69.9 6.5 78 7-93 3-81 (119)
45 PF14560 Ubiquitin_2: Ubiquiti 98.7 7.1E-08 1.5E-12 63.7 6.6 70 7-90 2-81 (87)
46 cd00196 UBQ Ubiquitin-like pro 98.5 6.7E-07 1.5E-11 51.4 6.6 66 12-91 3-68 (69)
47 KOG0006 E3 ubiquitin-protein l 98.3 1.3E-06 2.7E-11 71.2 6.4 63 17-93 14-77 (446)
48 PF11543 UN_NPL4: Nuclear pore 98.1 9.7E-06 2.1E-10 53.4 5.3 71 5-90 3-78 (80)
49 PF00789 UBX: UBX domain; Int 98.0 9E-05 1.9E-09 47.9 8.3 74 3-89 3-80 (82)
50 cd01811 OASL_repeat1 2'-5' oli 97.8 6.5E-05 1.4E-09 49.3 5.6 63 7-78 1-68 (80)
51 KOG4495 RNA polymerase II tran 97.8 4.7E-05 1E-09 52.3 4.8 74 7-89 3-79 (110)
52 cd01770 p47_UBX p47-like ubiqu 97.7 0.00047 1E-08 45.1 8.0 68 4-78 2-72 (79)
53 cd01774 Faf1_like2_UBX Faf1 ik 97.5 0.0012 2.7E-08 43.8 8.1 66 5-79 3-78 (85)
54 KOG1872 Ubiquitin-specific pro 97.4 0.0006 1.3E-08 57.7 6.7 69 7-90 4-73 (473)
55 PF08817 YukD: WXG100 protein 97.3 0.00052 1.1E-08 44.5 4.9 75 7-89 3-78 (79)
56 PF13019 Telomere_Sde2: Telome 97.3 0.0018 4E-08 48.1 8.3 81 7-97 1-89 (162)
57 KOG1769 Ubiquitin-like protein 97.3 0.0028 6E-08 43.6 8.5 79 4-96 18-96 (99)
58 KOG4583 Membrane-associated ER 97.2 0.00018 3.8E-09 59.0 2.0 65 4-74 7-73 (391)
59 cd01772 SAKS1_UBX SAKS1-like U 97.2 0.0033 7.1E-08 40.9 7.6 67 4-79 2-73 (79)
60 smart00166 UBX Domain present 97.1 0.0048 1E-07 39.9 7.5 67 5-79 3-74 (80)
61 cd01767 UBX UBX (ubiquitin reg 97.0 0.0074 1.6E-07 38.7 7.7 63 6-77 2-69 (77)
62 cd01771 Faf1_UBX Faf1 UBX doma 96.4 0.036 7.9E-07 36.3 7.9 68 3-79 1-73 (80)
63 COG5417 Uncharacterized small 96.3 0.038 8.2E-07 36.4 7.5 71 6-79 6-76 (81)
64 KOG3493 Ubiquitin-like protein 95.9 0.0022 4.8E-08 41.2 0.1 65 7-79 2-66 (73)
65 KOG0013 Uncharacterized conser 95.4 0.015 3.2E-07 45.1 3.0 64 8-79 147-211 (231)
66 cd01773 Faf1_like1_UBX Faf1 ik 95.3 0.094 2E-06 34.8 6.4 66 5-79 4-74 (82)
67 COG5227 SMT3 Ubiquitin-like pr 95.1 0.03 6.4E-07 38.2 3.4 68 4-79 22-89 (103)
68 PF15044 CLU_N: Mitochondrial 94.5 0.1 2.2E-06 33.9 4.8 58 24-93 1-59 (76)
69 PF09379 FERM_N: FERM N-termin 93.4 0.58 1.3E-05 29.4 6.6 71 11-92 1-77 (80)
70 cd00754 MoaD Ubiquitin domain 92.3 0.89 1.9E-05 28.5 6.4 64 16-93 14-77 (80)
71 KOG2086 Protein tyrosine phosp 92.1 0.39 8.4E-06 40.1 5.6 68 4-78 303-373 (380)
72 KOG1639 Steroid reductase requ 91.9 0.35 7.7E-06 38.6 4.9 79 8-97 2-82 (297)
73 TIGR01687 moaD_arch MoaD famil 90.7 1.8 3.9E-05 27.9 6.7 68 15-93 13-85 (88)
74 PF11470 TUG-UBL1: GLUT4 regul 90.7 0.97 2.1E-05 28.6 5.2 59 13-79 3-61 (65)
75 KOG3206 Alpha-tubulin folding 90.3 1.1 2.4E-05 34.9 6.1 57 21-90 16-79 (234)
76 PF02597 ThiS: ThiS family; I 90.2 1.2 2.7E-05 27.6 5.4 60 21-93 15-74 (77)
77 PLN02799 Molybdopterin synthas 88.7 3.4 7.3E-05 26.3 6.7 69 7-90 2-76 (82)
78 TIGR01682 moaD molybdopterin c 88.6 1.7 3.6E-05 27.7 5.2 62 15-91 13-75 (80)
79 smart00144 PI3K_rbd PI3-kinase 88.1 3.3 7.2E-05 28.3 6.8 81 5-93 16-105 (108)
80 PRK06437 hypothetical protein; 87.2 5.4 0.00012 24.9 7.8 48 15-79 9-56 (67)
81 PF14453 ThiS-like: ThiS-like 86.7 2.8 6.1E-05 26.0 5.2 39 21-72 9-47 (57)
82 smart00295 B41 Band 4.1 homolo 86.3 1.7 3.7E-05 31.4 4.8 65 5-76 2-72 (207)
83 PF08337 Plexin_cytopl: Plexin 86.3 3.8 8.2E-05 35.8 7.5 81 5-93 188-290 (539)
84 PRK08364 sulfur carrier protei 85.7 5 0.00011 25.1 6.1 43 21-79 17-59 (70)
85 PF10790 DUF2604: Protein of U 85.0 4 8.8E-05 26.3 5.4 69 14-93 3-72 (76)
86 cd06406 PB1_P67 A PB1 domain i 82.4 4.4 9.5E-05 26.8 4.9 43 7-61 5-47 (80)
87 cd06409 PB1_MUG70 The MUG70 pr 81.3 5.5 0.00012 26.6 5.2 32 9-41 3-34 (86)
88 cd00565 ThiS ThiaminS ubiquiti 81.2 9.9 0.00021 23.2 6.1 51 14-79 4-54 (65)
89 PF02505 MCR_D: Methyl-coenzym 80.4 3.5 7.5E-05 30.5 4.3 54 5-73 66-120 (153)
90 PF00794 PI3K_rbd: PI3-kinase 76.6 3.2 7E-05 27.9 3.0 80 4-91 14-101 (106)
91 TIGR03260 met_CoM_red_D methyl 75.7 5.7 0.00012 29.2 4.2 54 5-73 65-118 (150)
92 KOG0007 Splicing factor 3a, su 74.0 1.8 3.8E-05 35.3 1.4 50 14-71 290-340 (341)
93 PF00564 PB1: PB1 domain; Int 73.6 13 0.00028 23.2 5.1 47 7-61 2-48 (84)
94 PF08783 DWNN: DWNN domain; I 73.5 7.7 0.00017 25.2 4.0 55 9-74 1-56 (74)
95 COG4055 McrD Methyl coenzyme M 72.7 9.1 0.0002 28.3 4.6 53 6-73 75-128 (165)
96 TIGR01683 thiS thiamine biosyn 70.2 22 0.00047 21.6 6.2 51 14-79 3-53 (64)
97 cd01768 RA RA (Ras-associating 70.1 23 0.0005 22.4 5.8 49 16-69 11-65 (87)
98 cd01787 GRB7_RA RA (RAS-associ 68.8 11 0.00024 25.2 4.0 62 7-73 3-68 (85)
99 cd01776 Rin1_RA Ubiquitin doma 65.7 24 0.00053 23.6 5.2 52 14-68 10-62 (87)
100 PF00788 RA: Ras association ( 65.7 28 0.0006 21.9 5.5 46 8-58 4-52 (93)
101 PF12754 Blt1: Cell-cycle cont 64.5 2.2 4.7E-05 34.8 0.0 46 27-74 103-158 (309)
102 PF11069 DUF2870: Protein of u 62.9 10 0.00022 26.0 3.0 37 56-95 3-39 (98)
103 PRK05659 sulfur carrier protei 62.8 31 0.00068 20.8 5.5 51 14-79 5-55 (66)
104 smart00666 PB1 PB1 domain. Pho 62.4 16 0.00035 22.8 3.8 45 7-60 2-46 (81)
105 cd01760 RBD Ubiquitin-like dom 61.9 18 0.0004 23.1 4.0 53 9-67 2-56 (72)
106 PF04233 Phage_Mu_F: Phage Mu 61.7 5.1 0.00011 26.5 1.4 12 107-118 101-112 (112)
107 KOG3309 Ferredoxin [Energy pro 61.5 16 0.00034 27.2 4.0 31 5-36 42-72 (159)
108 PF10209 DUF2340: Uncharacteri 61.0 14 0.0003 26.3 3.5 55 23-79 21-101 (122)
109 TIGR02958 sec_mycoba_snm4 secr 60.8 47 0.001 28.2 7.3 81 7-96 3-84 (452)
110 PRK01777 hypothetical protein; 60.3 49 0.0011 22.2 7.5 78 5-98 2-81 (95)
111 cd06407 PB1_NLP A PB1 domain i 57.5 18 0.00038 23.7 3.4 33 10-42 2-34 (82)
112 PF06234 TmoB: Toluene-4-monoo 57.0 56 0.0012 21.8 8.8 72 7-79 4-77 (85)
113 PRK12385 fumarate reductase ir 56.6 28 0.0006 27.1 4.9 40 1-41 1-48 (244)
114 smart00314 RA Ras association 55.6 51 0.0011 20.9 6.1 35 7-41 5-39 (90)
115 cd06411 PB1_p51 The PB1 domain 55.6 38 0.00083 22.2 4.7 36 18-61 8-43 (78)
116 PRK06944 sulfur carrier protei 54.6 45 0.00096 19.9 7.3 54 15-90 6-59 (65)
117 KOG0012 DNA damage inducible p 54.2 24 0.00053 29.6 4.4 64 8-79 4-69 (380)
118 PF14451 Ub-Mut7C: Mut7-C ubiq 53.8 51 0.0011 21.5 5.1 51 17-90 23-74 (81)
119 KOG4250 TANK binding protein k 52.7 50 0.0011 30.0 6.4 44 13-64 321-364 (732)
120 PRK06488 sulfur carrier protei 51.8 52 0.0011 19.9 6.8 50 14-79 5-54 (65)
121 KOG4261 Talin [Cytoskeleton] 49.3 24 0.00052 32.6 3.9 66 10-79 5-76 (1003)
122 PF08154 NLE: NLE (NUC135) dom 48.9 62 0.0013 19.9 5.7 55 7-66 2-59 (65)
123 smart00455 RBD Raf-like Ras-bi 48.2 66 0.0014 20.2 4.9 49 9-65 2-52 (70)
124 KOG3391 Transcriptional co-rep 48.1 21 0.00046 26.1 2.8 66 27-99 61-143 (151)
125 PF02192 PI3K_p85B: PI3-kinase 47.9 17 0.00037 23.7 2.2 20 21-40 3-22 (78)
126 PRK06083 sulfur carrier protei 47.7 78 0.0017 20.7 7.5 50 15-79 24-73 (84)
127 cd01764 Urm1 Urm1-like ubuitin 46.9 63 0.0014 21.4 4.9 62 22-92 23-90 (94)
128 COG5100 NPL4 Nuclear pore prot 46.0 58 0.0013 28.1 5.5 72 7-91 1-78 (571)
129 PF14533 USP7_C2: Ubiquitin-sp 46.0 60 0.0013 24.5 5.2 63 6-73 20-90 (213)
130 cd05992 PB1 The PB1 domain is 45.6 42 0.0009 20.7 3.7 33 8-42 2-35 (81)
131 PF06200 tify: tify domain; I 45.3 21 0.00045 20.0 1.9 13 52-64 5-17 (36)
132 PRK08053 sulfur carrier protei 44.0 73 0.0016 19.4 7.1 51 14-79 5-55 (66)
133 PTZ00490 Ferredoxin superfamil 44.0 47 0.001 24.0 4.1 29 4-33 33-61 (143)
134 KOG2689 Predicted ubiquitin re 42.2 37 0.0008 27.5 3.6 35 5-40 209-243 (290)
135 PRK11130 moaD molybdopterin sy 41.3 82 0.0018 19.9 4.6 56 15-79 14-70 (81)
136 smart00143 PI3K_p85B PI3-kinas 38.7 29 0.00063 22.7 2.2 20 21-40 3-22 (78)
137 PF02824 TGS: TGS domain; Int 38.3 70 0.0015 19.2 3.8 29 9-40 1-29 (60)
138 PF02196 RBD: Raf-like Ras-bin 37.2 1.1E+02 0.0023 19.2 6.3 57 9-71 3-59 (71)
139 PLN02593 adrenodoxin-like ferr 37.1 59 0.0013 22.4 3.7 29 7-36 1-29 (117)
140 cd01777 SNX27_RA Ubiquitin dom 35.8 73 0.0016 21.3 3.8 34 6-40 1-34 (87)
141 PRK09908 xanthine dehydrogenas 34.9 75 0.0016 23.5 4.1 33 1-35 1-33 (159)
142 KOG1364 Predicted ubiquitin re 34.5 42 0.0009 28.0 2.9 65 8-79 279-348 (356)
143 KOG2561 Adaptor protein NUB1, 34.5 24 0.00053 30.7 1.6 50 22-78 54-103 (568)
144 PF11148 DUF2922: Protein of u 34.4 1.1E+02 0.0024 18.9 4.3 31 6-37 2-35 (69)
145 cd01782 AF6_RA_repeat1 Ubiquit 34.2 1.1E+02 0.0024 21.5 4.6 40 5-44 22-62 (112)
146 PRK11840 bifunctional sulfur c 34.1 2E+02 0.0044 23.7 6.8 50 15-79 6-55 (326)
147 PF00894 Luteo_coat: Luteoviru 34.0 1.4E+02 0.0029 21.7 5.1 54 7-62 46-117 (138)
148 PRK05863 sulfur carrier protei 33.7 1.1E+02 0.0024 18.5 6.5 50 14-79 5-54 (65)
149 PF14941 OAF: Transcriptional 32.5 1.3E+02 0.0029 23.7 5.2 37 3-40 24-60 (240)
150 PF13670 PepSY_2: Peptidase pr 32.2 1.1E+02 0.0024 19.3 4.1 24 4-28 53-76 (83)
151 PF11816 DUF3337: Domain of un 32.1 53 0.0012 26.6 3.2 53 22-74 252-312 (331)
152 KOG3439 Protein conjugation fa 31.8 1.5E+02 0.0032 20.9 4.9 51 5-62 29-82 (116)
153 TIGR02008 fdx_plant ferredoxin 31.3 1.3E+02 0.0028 19.7 4.5 30 6-36 2-31 (97)
154 PF07491 PPI_Ypi1: Protein pho 29.7 58 0.0013 20.4 2.3 10 108-117 33-42 (60)
155 PF11620 GABP-alpha: GA-bindin 28.6 1.9E+02 0.0041 19.5 4.8 68 21-99 6-73 (88)
156 PF12039 DUF3525: Protein of u 26.6 74 0.0016 26.3 3.0 33 53-91 25-66 (453)
157 cd06408 PB1_NoxR The PB1 domai 26.2 1.3E+02 0.0029 20.0 3.7 32 9-41 3-35 (86)
158 KOG4102 Uncharacterized conser 26.1 51 0.0011 23.4 1.8 10 108-117 59-68 (121)
159 PF02120 Flg_hook: Flagellar h 26.0 1.2E+02 0.0026 18.8 3.5 35 3-37 23-57 (85)
160 PF14191 YodL: YodL-like 25.4 1.5E+02 0.0033 20.2 4.1 38 23-60 45-82 (103)
161 TIGR01641 phageSPP1_gp7 phage 25.3 32 0.0007 22.7 0.7 13 106-118 93-105 (108)
162 KOG4146 Ubiquitin-like protein 24.7 2.4E+02 0.0052 19.4 5.5 15 26-40 34-48 (101)
163 PRK07440 hypothetical protein; 23.9 1.9E+02 0.0041 17.9 6.9 56 6-79 4-59 (70)
164 PF12436 USP7_ICP0_bdg: ICP0-b 23.8 1.5E+02 0.0033 22.9 4.3 68 4-79 66-145 (249)
165 PF14847 Ras_bdg_2: Ras-bindin 23.7 1.1E+02 0.0023 21.0 3.1 34 8-42 2-35 (105)
166 COG4925 Uncharacterized conser 22.7 1.9E+02 0.0041 21.3 4.3 33 4-37 48-80 (166)
167 PF04126 Cyclophil_like: Cyclo 21.4 1.3E+02 0.0029 20.7 3.2 29 7-37 1-29 (120)
168 cd06396 PB1_NBR1 The PB1 domai 21.3 1.8E+02 0.0038 19.1 3.6 25 15-40 8-34 (81)
169 PF03931 Skp1_POZ: Skp1 family 21.3 65 0.0014 19.4 1.4 31 7-38 1-31 (62)
170 PRK07696 sulfur carrier protei 21.2 2.1E+02 0.0046 17.5 6.5 51 14-79 5-56 (67)
171 KOG2507 Ubiquitin regulatory p 20.2 2.6E+02 0.0056 24.3 5.2 69 5-79 313-384 (506)
172 PRK04966 hypothetical protein; 20.2 45 0.00098 21.6 0.5 26 13-38 22-47 (72)
No 1
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=100.00 E-value=2.2e-34 Score=200.52 Aligned_cols=113 Identities=64% Similarity=1.095 Sum_probs=106.9
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+++.+.|+||+.+|.+++++.|++++||++||++|+++||++++++|.++++|||||+||+|+|+.||++|+++.|+.++
T Consensus 1 ~~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~ 80 (113)
T cd01814 1 VEEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAG 80 (113)
T ss_pred CCccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCC
Confidence 46899999999999999999999999999999999999999999999889999999999999999999999999999888
Q ss_pred CceEEEEEeCCCCcccccccccCCcCCCCccEE
Q 033470 83 GTITMHVVVQPPLTKAKTEKKLDEPQKKNFCSC 115 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~~~~~~~~~~~~~~~~c~C 115 (118)
..+|||||+|++.+.++..++.+.+++..+|+|
T Consensus 81 ~~~TmHvvlr~~~~~~~~~k~~~~~~~~~~c~c 113 (113)
T cd01814 81 GVITMHVVVQPPLADKKTEKKVDKAPKAVICTC 113 (113)
T ss_pred CceEEEEEecCCCCCccccccccCCcccCCCCC
Confidence 899999999999999887777788899999999
No 2
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=100.00 E-value=2e-32 Score=190.98 Aligned_cols=111 Identities=51% Similarity=0.952 Sum_probs=85.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+.|+|+||+.+|.+++++.|++++||++||++|+++||+||+..|.+++.+||||+||+|+|+.||++++++.|+.|..+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 57999999999996679999999999999999999999999987889999999999999999999999999999866678
Q ss_pred eEEEEEeCCCCcccccccccCCcCCCCccEEe
Q 033470 85 ITMHVVVQPPLTKAKTEKKLDEPQKKNFCSCS 116 (118)
Q Consensus 85 ~t~hlv~~~~~~~~~~~~~~~~~~~~~~c~C~ 116 (118)
++||||+|++.+.++.+++ ..+.++++|+|+
T Consensus 81 ~vmHlvvrp~~~~~~~~~~-~~~~k~~~C~C~ 111 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNEEKK-RKKPKQSGCSCC 111 (111)
T ss_dssp EEEEEEE-SSSSSSSSSS------STT-----
T ss_pred EEEEEEecCCCCCcccccc-ccCcCCCCCCCC
Confidence 9999999999888876555 455778899996
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.85 E-value=4.7e-21 Score=123.57 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=68.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+++ .+++++++||++||++|++. .++| +++|||+|+||.|+|+.+|++|+|.+++ |
T Consensus 1 m~i~vk~~~G~~~-~l~v~~~~tV~~lK~~i~~~-----~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~------~ 66 (74)
T cd01807 1 MFLTVKLLQGREC-SLQVSEKESVSTLKKLVSEH-----LNVP--EEQQRLLFKGKALADDKRLSDYSIGPNA------K 66 (74)
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEECCCCCCHHHCCCCCCC------E
Confidence 5899999999998 99999999999999999844 5777 8999999999999999999999999999 9
Q ss_pred EEEEeCC
Q 033470 87 MHVVVQP 93 (118)
Q Consensus 87 ~hlv~~~ 93 (118)
+||++++
T Consensus 67 l~l~~~~ 73 (74)
T cd01807 67 LNLVVRP 73 (74)
T ss_pred EEEEEcC
Confidence 9999885
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.84 E-value=6.4e-21 Score=123.05 Aligned_cols=74 Identities=24% Similarity=0.234 Sum_probs=66.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+ ++++ .+++++++||++||++|++ .+++| +++|||||+||.|+|+.||++|+|++++ |
T Consensus 1 mqi~vk~--~~~~-~l~v~~~~tV~~lK~~i~~-----~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~~------t 64 (74)
T cd01793 1 MQLFVRA--QNTH-TLEVTGQETVSDIKAHVAG-----LEGID--VEDQVLLLAGVPLEDDATLGQCGVEELC------T 64 (74)
T ss_pred CEEEEEC--CCEE-EEEECCcCcHHHHHHHHHh-----hhCCC--HHHEEEEECCeECCCCCCHHHcCCCCCC------E
Confidence 5789997 4676 9999999999999999974 46777 8999999999999999999999999998 9
Q ss_pred EEEEeCCCCc
Q 033470 87 MHVVVQPPLT 96 (118)
Q Consensus 87 ~hlv~~~~~~ 96 (118)
+|++++..++
T Consensus 65 l~l~~~l~GG 74 (74)
T cd01793 65 LEVAGRLLGG 74 (74)
T ss_pred EEEEEecCCC
Confidence 9999998764
No 5
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=2.2e-20 Score=128.57 Aligned_cols=79 Identities=23% Similarity=0.247 Sum_probs=72.0
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+||+.+|+++ .+++++++||++||++|++. +++| +++|||+|+|++|+|+.+|++|+|.+++
T Consensus 25 ~~~M~I~Vk~l~G~~~-~leV~~~~TV~~lK~kI~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~s---- 92 (103)
T cd01802 25 YDTMELFIETLTGTCF-ELRVSPFETVISVKAKIQRL-----EGIP--VAQQHLIWNNMELEDEYCLNDYNISEGC---- 92 (103)
T ss_pred CCCEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHH-----hCCC--hHHEEEEECCEECCCCCcHHHcCCCCCC----
Confidence 3579999999999998 99999999999999999844 5677 8999999999999999999999999998
Q ss_pred ceEEEEEeCCCCc
Q 033470 84 TITMHVVVQPPLT 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
|+||+++..++
T Consensus 93 --tL~l~~~l~GG 103 (103)
T cd01802 93 --TLKLVLAMRGG 103 (103)
T ss_pred --EEEEEEecCCC
Confidence 99999987653
No 6
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.83 E-value=1.2e-20 Score=124.62 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=63.7
Q ss_pred eEEEEEEecCCCee-eeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCC--CCCCCCCC
Q 033470 6 LVELKFRLYDGSDI-GPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCK--VPFGELPK 82 (118)
Q Consensus 6 ~i~l~~k~~~G~~~-~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~--i~~g~~~~ 82 (118)
.|+|.||+++|+.+ .++++++++||++||++|++.+|. ..| +++|||||+||+|+|+.||++|. +..+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~---~~~--~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~--- 72 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPS---KPL--EQDQRLIYSGKLLPDHLKLRDVLRKQDEYH--- 72 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCC---CCC--hhHeEEEEcCeeccchhhHHHHhhcccCCc---
Confidence 47899999999984 155558999999999999987652 123 79999999999999999999995 88888
Q ss_pred CceEEEEEe
Q 033470 83 GTITMHVVV 91 (118)
Q Consensus 83 ~~~t~hlv~ 91 (118)
|||||.
T Consensus 73 ---tiHLV~ 78 (79)
T cd01790 73 ---MVHLVC 78 (79)
T ss_pred ---eEEEEe
Confidence 999984
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.82 E-value=2.7e-20 Score=122.12 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=67.8
Q ss_pred EEEEEEecCCCe-eeeEE-eCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 7 VELKFRLYDGSD-IGPFR-YSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 7 i~l~~k~~~G~~-~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
|+|+||+.+|+. + .++ +++++||++||++|++ ..++| +++|||||+||+|+|+.||++|||.+++
T Consensus 1 M~I~vk~~~G~~~~-~l~~v~~~~TV~~lK~~i~~-----~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~~----- 67 (78)
T cd01797 1 MWIQVRTMDGKETR-TVDSLSRLTKVEELREKIQE-----LFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLND----- 67 (78)
T ss_pred CEEEEEcCCCCEEE-EeeccCCcCcHHHHHHHHHH-----HhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCCC-----
Confidence 689999999996 5 785 8999999999999974 35677 8999999999999999999999999999
Q ss_pred eEEEEEeCCCC
Q 033470 85 ITMHVVVQPPL 95 (118)
Q Consensus 85 ~t~hlv~~~~~ 95 (118)
|+||++++.+
T Consensus 68 -~i~l~~~~~~ 77 (78)
T cd01797 68 -IIQLLVRQDP 77 (78)
T ss_pred -EEEEEEecCC
Confidence 9999998754
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.82 E-value=4.2e-20 Score=118.99 Aligned_cols=76 Identities=24% Similarity=0.403 Sum_probs=69.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+++ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.+|++|++..++ +
T Consensus 1 m~i~vk~~~G~~~-~l~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~------~ 66 (76)
T PTZ00044 1 MQILIKTLTGKKQ-SFNFEPDNTVQQVKMALQEK-----EGID--VKQIRLIYSGKQMSDDLKLSDYKVVPGS------T 66 (76)
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEEccCCCcHHHcCCCCCC------E
Confidence 5899999999998 99999999999999999854 5677 8999999999999999999999999998 9
Q ss_pred EEEEeCCCCc
Q 033470 87 MHVVVQPPLT 96 (118)
Q Consensus 87 ~hlv~~~~~~ 96 (118)
+|++++..++
T Consensus 67 i~l~~~~~gg 76 (76)
T PTZ00044 67 IHMVLQLRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 9999987553
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.81 E-value=6.8e-20 Score=118.24 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=67.6
Q ss_pred EEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEE
Q 033470 9 LKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMH 88 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~h 88 (118)
|+||+..|+++ ++++++++||++||++|++. .++| +++|+|+|+|+.|+|+.+|++|+|++++ |+|
T Consensus 1 i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~-----~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~~------tl~ 66 (74)
T cd01810 1 ILVRNDKGRSS-IYEVQLTQTVATLKQQVSQR-----ERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPGC------TVF 66 (74)
T ss_pred CEEECCCCCEE-EEEECCcChHHHHHHHHHHH-----hCCC--HHHeEEEECCEECCCCCCHHHcCCCCCC------EEE
Confidence 68999999997 99999999999999999743 5677 8999999999999999999999999999 999
Q ss_pred EEeCCCCc
Q 033470 89 VVVQPPLT 96 (118)
Q Consensus 89 lv~~~~~~ 96 (118)
|+++..++
T Consensus 67 l~~~l~gg 74 (74)
T cd01810 67 MNLRLRGG 74 (74)
T ss_pred EEEEccCC
Confidence 99987653
No 10
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.80 E-value=1.1e-19 Score=117.05 Aligned_cols=69 Identities=26% Similarity=0.371 Sum_probs=63.4
Q ss_pred EEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEE
Q 033470 9 LKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMH 88 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~h 88 (118)
|+||+.+|+++ ++++++++||++||++|++ .+++| +++|||||+|+.|+|+.+|++|+|..++ |+|
T Consensus 1 ~~vk~~~G~~~-~l~v~~~~TV~~lK~~I~~-----~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~~------tv~ 66 (70)
T cd01794 1 LKVRLSTGKDV-KLSVSSKDTVGQLKKQLQA-----AEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKDY------VVQ 66 (70)
T ss_pred CeEEcCCCCEE-EEEECCcChHHHHHHHHHH-----HhCCC--HHHeEEEECCeECCCCCCHHHcCCCCCC------EEE
Confidence 57899999998 9999999999999999974 46677 7999999999999999999999999888 999
Q ss_pred EEe
Q 033470 89 VVV 91 (118)
Q Consensus 89 lv~ 91 (118)
|.+
T Consensus 67 ~~~ 69 (70)
T cd01794 67 VIV 69 (70)
T ss_pred EEe
Confidence 986
No 11
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.80 E-value=1.6e-19 Score=115.18 Aligned_cols=70 Identities=27% Similarity=0.484 Sum_probs=64.6
Q ss_pred EEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEE
Q 033470 9 LKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMH 88 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~h 88 (118)
|+||+.+|+.+ ++++++++||++||++|++. .++| +++|||+|+|+.|+|+.+|++|+|.+++ |+|
T Consensus 1 i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~s------tl~ 66 (70)
T cd01798 1 VYVRTNTGHTF-PVEVDPDTDIKQLKEVVAKR-----QGVP--PDQLRVIFAGKELRNTTTIQECDLGQQS------ILH 66 (70)
T ss_pred CEEEcCCCCEE-EEEECCCChHHHHHHHHHHH-----HCCC--HHHeEEEECCeECCCCCcHHHcCCCCCC------EEE
Confidence 68999999998 99999999999999999854 5677 7999999999999999999999999999 999
Q ss_pred EEeC
Q 033470 89 VVVQ 92 (118)
Q Consensus 89 lv~~ 92 (118)
|+.|
T Consensus 67 l~~~ 70 (70)
T cd01798 67 AVRR 70 (70)
T ss_pred EEeC
Confidence 9875
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.79 E-value=3.5e-19 Score=115.67 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=65.1
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|.|+|++..|+.+ .+++++++||++||++|++.+ ++| +++|||||+|++|+|+.||++|||.+|+ |
T Consensus 2 ~~i~vkt~~Gk~~-~~~v~~~~TV~~LK~~I~~~~-----~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~s------t 67 (73)
T cd01791 2 IEVVCNDRLGKKV-RVKCNPDDTIGDLKKLIAAQT-----GTR--PEKIVLKKWYTIFKDHISLGDYEIHDGM------N 67 (73)
T ss_pred EEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHHh-----CCC--hHHEEEEeCCcCCCCCCCHHHcCCCCCC------E
Confidence 7899999999998 999999999999999998653 466 8999999999999999999999999999 9
Q ss_pred EEEEe
Q 033470 87 MHVVV 91 (118)
Q Consensus 87 ~hlv~ 91 (118)
+||.-
T Consensus 68 v~l~~ 72 (73)
T cd01791 68 LELYY 72 (73)
T ss_pred EEEEe
Confidence 99863
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.79 E-value=6.5e-19 Score=112.65 Aligned_cols=75 Identities=27% Similarity=0.446 Sum_probs=68.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ .+++++++||++||++|++. .++| ++.|||+|+|+.|+|+.||++|++..|+ +
T Consensus 1 m~i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~-----~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g~------~ 66 (76)
T cd01806 1 MLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDDKTAADYKLEGGS------V 66 (76)
T ss_pred CEEEEEeCCCCEE-EEEECCCCCHHHHHHHHhHh-----hCCC--hhhEEEEECCeEccCCCCHHHcCCCCCC------E
Confidence 5899999999998 99999999999999999854 4677 7999999999999999999999999999 9
Q ss_pred EEEEeCCCC
Q 033470 87 MHVVVQPPL 95 (118)
Q Consensus 87 ~hlv~~~~~ 95 (118)
+|++++..+
T Consensus 67 i~l~~~~~g 75 (76)
T cd01806 67 LHLVLALRG 75 (76)
T ss_pred EEEEEEccC
Confidence 999988654
No 14
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.78 E-value=6.6e-19 Score=112.60 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=69.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ .+++++++||++||++|++. .++| ++.|||+|+|+.|+|+.+|++|++.+|+ +
T Consensus 1 m~i~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~ 66 (76)
T cd01803 1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (76)
T ss_pred CEEEEEcCCCCEE-EEEECCcCcHHHHHHHHHHH-----hCCC--HHHeEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 5799999999998 99999999999999999744 4666 7999999999999999999999999998 9
Q ss_pred EEEEeCCCCc
Q 033470 87 MHVVVQPPLT 96 (118)
Q Consensus 87 ~hlv~~~~~~ 96 (118)
+|++++..++
T Consensus 67 i~l~~~~~gg 76 (76)
T cd01803 67 LHLVLRLRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 9999987653
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.78 E-value=1.2e-18 Score=113.95 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=67.4
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCce
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTI 85 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|+|+||+..|+.+ +++++++.||++||++|++. .++| +++|||+|+|++|+|+ +|++|||.+|+
T Consensus 1 ~m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~-----~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~~------ 65 (78)
T cd01804 1 PMNLNIHSTTGTRF-DLSVPPDETVEGLKKRISQR-----LKVP--KERLALLHRETRLSSG-KLQDLGLGDGS------ 65 (78)
T ss_pred CeEEEEEECCCCEE-EEEECCcCHHHHHHHHHHHH-----hCCC--hHHEEEEECCcCCCCC-cHHHcCCCCCC------
Confidence 47999999999997 99999999999999999855 3456 7999999999999999 99999999999
Q ss_pred EEEEEeCCCC
Q 033470 86 TMHVVVQPPL 95 (118)
Q Consensus 86 t~hlv~~~~~ 95 (118)
++||+....+
T Consensus 66 ~i~l~~~~~~ 75 (78)
T cd01804 66 KLTLVPTVEA 75 (78)
T ss_pred EEEEEeeccc
Confidence 9999977644
No 16
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.77 E-value=1.3e-18 Score=111.28 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=64.1
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+ . .++++++.||++||++|++. .++| +++|||+|+||.|+|+.||++|++.+|+ |
T Consensus 1 ~~i~vk~~~g~-~-~l~v~~~~TV~~lK~~I~~~-----~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~s------t 65 (71)
T cd01808 1 IKVTVKTPKDK-E-EIEIAEDASVKDFKEAVSKK-----FKAN--QEQLVLIFAGKILKDTDTLTQHNIKDGL------T 65 (71)
T ss_pred CEEEEEcCCCC-E-EEEECCCChHHHHHHHHHHH-----hCCC--HHHEEEEECCeEcCCCCcHHHcCCCCCC------E
Confidence 57999999996 4 89999999999999999865 3456 7999999999999999999999999998 9
Q ss_pred EEEEeC
Q 033470 87 MHVVVQ 92 (118)
Q Consensus 87 ~hlv~~ 92 (118)
+|++++
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 999975
No 17
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.76 E-value=2.9e-18 Score=110.50 Aligned_cols=73 Identities=32% Similarity=0.494 Sum_probs=65.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccC--CCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIV--PKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~i--p~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
|+|+||+.+|+.+ .+++++++||++||++|++. .++ | +++|||+|+|+.|+|+.+|++|+|++|+
T Consensus 1 m~i~vk~~~g~~~-~l~v~~~~TV~~lK~~i~~~-----~~i~~~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~----- 67 (77)
T cd01805 1 MKITFKTLKQQTF-PIEVDPDDTVAELKEKIEEE-----KGCDYP--PEQQKLIYSGKILKDDTTLEEYKIDEKD----- 67 (77)
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHh-----hCCCCC--hhHeEEEECCEEccCCCCHHHcCCCCCC-----
Confidence 6899999999998 99999999999999999855 345 5 8999999999999999999999999998
Q ss_pred eEEEEEeCC
Q 033470 85 ITMHVVVQP 93 (118)
Q Consensus 85 ~t~hlv~~~ 93 (118)
++|++++.
T Consensus 68 -~i~~~~~~ 75 (77)
T cd01805 68 -FVVVMVSK 75 (77)
T ss_pred -EEEEEEec
Confidence 88887664
No 18
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.76 E-value=2.2e-18 Score=112.91 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=67.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeE--EEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKL--ISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrL--Iy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
|+|+||+..|+++ .+++++++||++||++|++. .++| +++||| +|+|++|+|+.+|++|||.+|+
T Consensus 3 ~~i~Vk~~~G~~~-~~~v~~~~TV~~lK~~I~~~-----~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs----- 69 (80)
T cd01792 3 WDLKVKMLGGNEF-LVSLRDSMTVSELKQQIAQK-----IGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPGS----- 69 (80)
T ss_pred eEEEEEeCCCCEE-EEEcCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCCC-----
Confidence 8999999999998 99999999999999999855 3466 799999 9999999999999999999998
Q ss_pred eEEEEEeCCC
Q 033470 85 ITMHVVVQPP 94 (118)
Q Consensus 85 ~t~hlv~~~~ 94 (118)
++||+++..
T Consensus 70 -~l~l~~~~~ 78 (80)
T cd01792 70 -TVLLVVQNC 78 (80)
T ss_pred -EEEEEEEcc
Confidence 999998854
No 19
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.76 E-value=3.2e-18 Score=108.42 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=66.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ ++++++++||++||++|++. .++| ++.|||+|+|+.|+|+.+|++|++.+|+ +
T Consensus 1 i~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~ 66 (72)
T cd01809 1 IEIKVKTLDSQTH-TFTVEEEITVLDLKEKIAEE-----VGIP--VEQQRLIYSGRVLKDDETLSEYKVEDGH------T 66 (72)
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCEECCCcCcHHHCCCCCCC------E
Confidence 6899999999997 99999999999999999865 3566 7999999999999999999999999998 9
Q ss_pred EEEEeC
Q 033470 87 MHVVVQ 92 (118)
Q Consensus 87 ~hlv~~ 92 (118)
+|++++
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 999865
No 20
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.73 E-value=7.7e-18 Score=109.34 Aligned_cols=71 Identities=18% Similarity=0.346 Sum_probs=64.0
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEeCC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
++|+++ ++++++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+ ++||+++.
T Consensus 5 l~g~~~-~l~v~~~~TV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~------~l~v~~~~ 70 (76)
T cd01800 5 LNGQML-NFTLQLSDPVSVLKVKIHEE-----TGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGT------IIHLQLKE 70 (76)
T ss_pred cCCeEE-EEEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCC------EEEEEEec
Confidence 478887 99999999999999999743 5677 8999999999999999999999999999 99999998
Q ss_pred CCccc
Q 033470 94 PLTKA 98 (118)
Q Consensus 94 ~~~~~ 98 (118)
.++.+
T Consensus 71 ~gg~~ 75 (76)
T cd01800 71 RGGRK 75 (76)
T ss_pred CCCcC
Confidence 77654
No 21
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.73 E-value=1.3e-17 Score=105.31 Aligned_cols=68 Identities=31% Similarity=0.545 Sum_probs=62.3
Q ss_pred EecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEe
Q 033470 12 RLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVV 91 (118)
Q Consensus 12 k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
|+.+|+++ ++++++++||.+||++|++.+ ++| ++.|+|+|+|+.|+|+.||++|+|.+|+ +||+++
T Consensus 1 k~~~g~~~-~~~v~~~~tV~~lK~~i~~~~-----~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~~------~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKTF-TLEVDPDDTVADLKQKIAEET-----GIP--PEQQRLIYNGKELDDDKTLSDYGIKDGS------TIHLVI 66 (69)
T ss_dssp EETTSEEE-EEEEETTSBHHHHHHHHHHHH-----TST--GGGEEEEETTEEESTTSBTGGGTTSTTE------EEEEEE
T ss_pred CCCCCcEE-EEEECCCCCHHHhhhhccccc-----ccc--cccceeeeeeecccCcCcHHHcCCCCCC------EEEEEE
Confidence 67899998 999999999999999998653 466 8999999999999999999999999998 999998
Q ss_pred CC
Q 033470 92 QP 93 (118)
Q Consensus 92 ~~ 93 (118)
++
T Consensus 67 k~ 68 (69)
T PF00240_consen 67 KP 68 (69)
T ss_dssp SS
T ss_pred ec
Confidence 75
No 22
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=4.4e-18 Score=124.22 Aligned_cols=83 Identities=27% Similarity=0.418 Sum_probs=76.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|.|||+++.|+++ .+++++++||..+|++|. +.++|| +++|||||+|+.|+|+.||++|+|+..+ |
T Consensus 1 m~ifVk~l~~kti-~~eve~~~ti~~~Kakiq-----~~egIp--~dqqrlifag~qLedgrtlSDY~Iqkes------t 66 (156)
T KOG0004|consen 1 MQIFVKTLTGKTI-TLEVEANDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (156)
T ss_pred Cccchhhccccce-eeeecccccHHHHHHhhh-----cccCCC--chhhhhhhhhcccccCCccccccccccc------e
Confidence 5799999999998 999999999999999996 668899 8999999999999999999999999988 9
Q ss_pred EEEEeCCCCcccccccc
Q 033470 87 MHVVVQPPLTKAKTEKK 103 (118)
Q Consensus 87 ~hlv~~~~~~~~~~~~~ 103 (118)
+||+++..++.+++.++
T Consensus 67 l~l~l~l~Gg~kkrkkk 83 (156)
T KOG0004|consen 67 LHLVLRLRGGAKKRKKK 83 (156)
T ss_pred EEEEEEecCCccccccc
Confidence 99999999998776553
No 23
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.71 E-value=1.9e-17 Score=106.42 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=60.7
Q ss_pred EEEEec-CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCC-CccccCCCCCCCCCCCceE
Q 033470 9 LKFRLY-DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENN-KTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 9 l~~k~~-~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~-~tL~~~~i~~g~~~~~~~t 86 (118)
|+||+. +|+++ .+++++++||++||++|++ .+++| +++|||||+||.|+|+ .+|++|+|.+|+ +
T Consensus 1 l~v~~~~~g~~~-~l~v~~~~TV~~lK~~I~~-----~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~------~ 66 (71)
T cd01796 1 ITVYTARSETTF-SLDVDPDLELENFKALCEA-----ESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGD------L 66 (71)
T ss_pred CEEEECCCCCEE-EEEECCcCCHHHHHHHHHH-----HhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCC------E
Confidence 578999 99997 9999999999999999974 46787 8999999999999987 689999999999 8
Q ss_pred EEE
Q 033470 87 MHV 89 (118)
Q Consensus 87 ~hl 89 (118)
+||
T Consensus 67 l~l 69 (71)
T cd01796 67 VVL 69 (71)
T ss_pred EEE
Confidence 886
No 24
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-17 Score=105.46 Aligned_cols=70 Identities=30% Similarity=0.518 Sum_probs=65.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|.|++++++|+.+ .++++|+++|+.+|++|. +.++|| |.+|||||+||.|.|+.|-+.|++.-|+ +
T Consensus 1 m~iKvktLt~KeI-eidIep~DkverIKErvE-----EkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~GS------V 66 (70)
T KOG0005|consen 1 MLIKVKTLTGKEI-EIDIEPTDKVERIKERVE-----EKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGGS------V 66 (70)
T ss_pred CeeeEeeeccceE-EEeeCcchHHHHHHHHhh-----hhcCCC--chhhhhhhccccccccccHHHhhhccce------e
Confidence 4689999999998 999999999999999997 457898 8999999999999999999999999998 9
Q ss_pred EEEE
Q 033470 87 MHVV 90 (118)
Q Consensus 87 ~hlv 90 (118)
+|+|
T Consensus 67 lHlv 70 (70)
T KOG0005|consen 67 LHLV 70 (70)
T ss_pred EeeC
Confidence 9985
No 25
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=4.7e-18 Score=118.06 Aligned_cols=77 Identities=26% Similarity=0.435 Sum_probs=71.4
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
+.+++++..|+++ .++++|++||..||++|. +.+++| +++|||||+||+|+|+.||++||+...+ |
T Consensus 1 ~~~~~~~~~GKT~-~le~EpS~ti~~vKA~i~-----~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~~------T 66 (128)
T KOG0003|consen 1 MQIFVKTLTGKTI-TLEVEPSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES------T 66 (128)
T ss_pred CcEEEEEeeCceE-EEEecccchHHHHHHHhc-----cccCCC--HHHHHHHhcccccccCCcccccCccchh------h
Confidence 3688999999998 999999999999999995 778898 8999999999999999999999999888 9
Q ss_pred EEEEeCCCCcc
Q 033470 87 MHVVVQPPLTK 97 (118)
Q Consensus 87 ~hlv~~~~~~~ 97 (118)
+|++++..++-
T Consensus 67 l~~~~rL~GG~ 77 (128)
T KOG0003|consen 67 LHLVLRLRGGI 77 (128)
T ss_pred hhhhHHHhcCC
Confidence 99999988873
No 26
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.66 E-value=8.1e-16 Score=102.39 Aligned_cols=80 Identities=18% Similarity=0.310 Sum_probs=73.0
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+...|+|+|++.+|+.+ .++|.+++++..||+++++. .++| +++|||+|.|+.|+|+.|+++|++.+++
T Consensus 8 ~~~~i~I~v~~~~g~~~-~~~v~~~~~l~~l~~~y~~~-----~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d--- 76 (87)
T cd01763 8 ISEHINLKVKGQDGNEV-FFKIKRSTPLKKLMEAYCQR-----QGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGD--- 76 (87)
T ss_pred CCCeEEEEEECCCCCEE-EEEEcCCCHHHHHHHHHHHH-----hCCC--ccceEEEECCeECCCCCCHHHcCCCCCC---
Confidence 35899999999999997 99999999999999999843 5677 7999999999999999999999999999
Q ss_pred CceEEEEEeCCCCc
Q 033470 83 GTITMHVVVQPPLT 96 (118)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (118)
++|++++..++
T Consensus 77 ---~I~v~l~l~GG 87 (87)
T cd01763 77 ---EIEVMLEQTGG 87 (87)
T ss_pred ---EEEEEEecccC
Confidence 99999987654
No 27
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.65 E-value=3.9e-16 Score=98.80 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=62.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+. |+.+ ++++++++||++||++|++ ..++| +++|||+|+|+.|+|+.+|++|++.+|+ +
T Consensus 1 i~i~vk~~-g~~~-~i~v~~~~tv~~lK~~i~~-----~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~------~ 65 (71)
T cd01812 1 IRVRVKHG-GESH-DLSISSQATFGDLKKMLAP-----VTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGS------K 65 (71)
T ss_pred CEEEEEEC-CEEE-EEEECCCCcHHHHHHHHHH-----hhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCC------E
Confidence 67899996 8886 9999999999999999974 35677 8999999999999999999999999998 8
Q ss_pred EEEE
Q 033470 87 MHVV 90 (118)
Q Consensus 87 ~hlv 90 (118)
+|++
T Consensus 66 l~v~ 69 (71)
T cd01812 66 VMLL 69 (71)
T ss_pred EEEe
Confidence 9876
No 28
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.64 E-value=2.4e-16 Score=103.25 Aligned_cols=57 Identities=26% Similarity=0.436 Sum_probs=48.5
Q ss_pred CCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEe
Q 033470 25 SPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVV 91 (118)
Q Consensus 25 ~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
..++||++||++|+++++ +++| ++++|||||+||+|+|+.||++|||.+|+ |+|||.
T Consensus 18 ~~~~TV~~LK~kI~~~~~---egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~gs------tlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLP---DSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSGS------TIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhc---cCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCCC------EEEEEe
Confidence 346799999999996643 3342 27999999999999999999999999999 999985
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=1.3e-15 Score=124.99 Aligned_cols=76 Identities=32% Similarity=0.444 Sum_probs=64.7
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+++|+++ .|+|++++||.+||++|++.. +...+| +++|||||+||+|+|+.+|++|+|.+++ +
T Consensus 1 MkItVKtl~g~~~-~IeV~~~~TV~dLK~kI~~~~--g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~------~ 69 (378)
T TIGR00601 1 MTLTFKTLQQQKF-KIDMEPDETVKELKEKIEAEQ--GKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKD------F 69 (378)
T ss_pred CEEEEEeCCCCEE-EEEeCCcChHHHHHHHHHHhh--CCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 6899999999998 999999999999999998653 111256 7999999999999999999999999998 5
Q ss_pred EEEEeCC
Q 033470 87 MHVVVQP 93 (118)
Q Consensus 87 ~hlv~~~ 93 (118)
+++++..
T Consensus 70 Ivvmv~k 76 (378)
T TIGR00601 70 VVVMVSK 76 (378)
T ss_pred EEEEecc
Confidence 5555553
No 30
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.60 E-value=2.9e-15 Score=97.31 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=60.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE---cCeecCCCCccccCCCCCCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS---AGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy---~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
|.|.|+. .|+++ ++++++++||++||++|++. .++| +++||||| +|+.|+|+.+|++|+|.+|+
T Consensus 1 ~~i~vk~-~g~~~-~v~v~~~~Tv~~lK~~i~~~-----tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~---- 67 (74)
T cd01813 1 VPVIVKW-GGQEY-SVTTLSEDTVLDLKQFIKTL-----TGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNT---- 67 (74)
T ss_pred CEEEEEE-CCEEE-EEEECCCCCHHHHHHHHHHH-----HCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCC----
Confidence 3566665 78887 99999999999999999854 4677 89999997 99999999999999999998
Q ss_pred ceEEEEE
Q 033470 84 TITMHVV 90 (118)
Q Consensus 84 ~~t~hlv 90 (118)
.++|+
T Consensus 68 --~i~lm 72 (74)
T cd01813 68 --KIMMM 72 (74)
T ss_pred --EEEEE
Confidence 77765
No 31
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.55 E-value=6.7e-15 Score=123.23 Aligned_cols=76 Identities=26% Similarity=0.414 Sum_probs=67.3
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCce
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTI 85 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|+|+||+.++ ++ .|.|..+.||.+||+.|+..+ ++| +++++|||+||+|+|++||..|||.+|.
T Consensus 15 ~irV~Vkt~~d-k~-~~~V~~~ssV~qlKE~I~~~f-----~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg~------ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KY-EVNVASDSSVLQLKELIAQRF-----GAP--PDQLVLIYAGRILKDDDTLKQYGIQDGH------ 79 (493)
T ss_pred eeEEEEecCCc-ce-eEecccchHHHHHHHHHHHhc-----CCC--hhHeeeeecCccccChhhHHHcCCCCCc------
Confidence 48899999988 65 899999999999999998543 345 8999999999999999999999999998
Q ss_pred EEEEEeCCCCc
Q 033470 86 TMHVVVQPPLT 96 (118)
Q Consensus 86 t~hlv~~~~~~ 96 (118)
|||||++....
T Consensus 80 TvHLVik~~~~ 90 (493)
T KOG0010|consen 80 TVHLVIKSQPR 90 (493)
T ss_pred EEEEEeccCCC
Confidence 99999886533
No 32
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.53 E-value=2.2e-14 Score=88.06 Aligned_cols=64 Identities=31% Similarity=0.534 Sum_probs=56.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
|+|+||+.+ ..+ .+++++++||++||++|++. .++| ++.|||+|+|+.|+|+.+|++|++.+|+
T Consensus 1 ~~i~vk~~~-~~~-~~~v~~~~tv~~lk~~i~~~-----~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTI-TLEVKPSDTVSELKEKIAEL-----TGIP--VEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceE-EEEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 579999998 676 99999999999999999855 3566 7899999999999999999999998764
No 33
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.47 E-value=9.1e-14 Score=111.84 Aligned_cols=67 Identities=31% Similarity=0.454 Sum_probs=61.1
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
|+|+||++.|++| ++++.|++||.+||.+|+..-..| .| +++|+|||+||+|.|+.|+.+|+|.+++
T Consensus 1 m~lt~KtL~q~~F-~iev~Pe~tV~evK~kIet~~g~d---yP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~ 67 (340)
T KOG0011|consen 1 MKLTVKTLKQQTF-TIEVKPEDTVVEVKKKIETEKGPD---YP--AEQQKLIYSGKILKDETTVGEYKVKEKK 67 (340)
T ss_pred CeeEeeeccCcee-EeecCcchhHHHHHHHHHhccCCC---Cc--hhhheeeecceeccCCcchhhhccccCc
Confidence 6899999999998 999999999999999999764322 46 7999999999999999999999999988
No 34
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.47 E-value=1.8e-13 Score=89.24 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=57.6
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecC-CCCccccCCCC-CCCCCCCce
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILE-NNKTVGQCKVP-FGELPKGTI 85 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~-D~~tL~~~~i~-~g~~~~~~~ 85 (118)
.|.=+...|.++ .++|++++||++||++|++ .+++| +++||| |.|+.|. |+.||++|++. +|+
T Consensus 4 ~~~~~~~~~~t~-~l~v~~~~TV~~lK~kI~~-----~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~------ 68 (75)
T cd01799 4 SVEDAQSHTVTI-WLTVRPDMTVAQLKDKVFL-----DYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGD------ 68 (75)
T ss_pred EEeccccCCCeE-EEEECCCCcHHHHHHHHHH-----HHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCC------
Confidence 344455677887 9999999999999999974 46788 899999 9999985 77999999999 777
Q ss_pred EEEEEe
Q 033470 86 TMHVVV 91 (118)
Q Consensus 86 t~hlv~ 91 (118)
++||-+
T Consensus 69 ~~~l~~ 74 (75)
T cd01799 69 SAFLYI 74 (75)
T ss_pred EEEEEe
Confidence 888753
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.37 E-value=2.1e-12 Score=80.05 Aligned_cols=67 Identities=36% Similarity=0.536 Sum_probs=59.0
Q ss_pred EEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEE
Q 033470 11 FRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVV 90 (118)
Q Consensus 11 ~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
||..+|+.+ .+++++++||.+||++|+..+ ++| ++.|+|+|+|+.|+|+.+|++|++..++ ++|+.
T Consensus 2 v~~~~~~~~-~~~~~~~~ti~~lK~~i~~~~-----~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~------~i~v~ 67 (69)
T cd01769 2 VKTLTGKTF-ELEVSPDDTVAELKAKIAAKE-----GVP--PEQQRLIYAGKILKDDKTLSDYGIQDGS------TLHLV 67 (69)
T ss_pred eEccCCCEE-EEEECCCChHHHHHHHHHHHH-----CcC--hHHEEEEECCcCCCCcCCHHHCCCCCCC------EEEEE
Confidence 566789997 999999999999999998664 355 7899999999999999999999999988 88875
Q ss_pred e
Q 033470 91 V 91 (118)
Q Consensus 91 ~ 91 (118)
.
T Consensus 68 ~ 68 (69)
T cd01769 68 L 68 (69)
T ss_pred E
Confidence 3
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.23 E-value=2e-11 Score=77.58 Aligned_cols=71 Identities=35% Similarity=0.571 Sum_probs=62.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCC-CceeEEEcCeecCCCCccccCCCCCCCCCCCce
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTA-NDIKLISAGKILENNKTVGQCKVPFGELPKGTI 85 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~-~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
|+|+++..+|+.+ .+.+.+++++..|++++++. .++| + +.++|+|.|+.|++++|++++++.+|+
T Consensus 1 I~i~v~~~~~~~~-~~~v~~~~~~~~l~~~~~~~-----~~i~--~~~~~~l~fdG~~L~~~~T~~~~~ied~d------ 66 (72)
T PF11976_consen 1 ITIKVRSQDGKEI-KFKVKPTTTVSKLIEKYCEK-----KGIP--PEESIRLIFDGKRLDPNDTPEDLGIEDGD------ 66 (72)
T ss_dssp EEEEEEETTSEEE-EEEEETTSCCHHHHHHHHHH-----HTTT--T-TTEEEEETTEEE-TTSCHHHHT-STTE------
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHh-----hCCC--ccceEEEEECCEEcCCCCCHHHCCCCCCC------
Confidence 6899999999997 99999999999999999844 4566 5 899999999999999999999999999
Q ss_pred EEEEEe
Q 033470 86 TMHVVV 91 (118)
Q Consensus 86 t~hlv~ 91 (118)
++|+++
T Consensus 67 ~Idv~I 72 (72)
T PF11976_consen 67 TIDVII 72 (72)
T ss_dssp EEEEE-
T ss_pred EEEEEC
Confidence 999864
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.1e-11 Score=108.13 Aligned_cols=75 Identities=24% Similarity=0.440 Sum_probs=67.3
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
.+|++|+++.+.. +|.++..+||.++|.+|+++ -.|+ .+.|||||+||+|.|++++.+|+| +|. +
T Consensus 3 ~~v~vktld~r~~-t~~ig~q~ti~~~~d~~r~~-----~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk------~ 67 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTR-TFIIGAQMTIKEFKDHIRAS-----VNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGK------V 67 (1143)
T ss_pred cceeeeeccccee-EEEechHHHHHHHHHHHHHh-----cccc--cccceeeecceeeccchhhhhccC-CCe------E
Confidence 4599999999995 99999999999999999854 4677 799999999999999999999999 688 9
Q ss_pred EEEEeCCCCc
Q 033470 87 MHVVVQPPLT 96 (118)
Q Consensus 87 ~hlv~~~~~~ 96 (118)
+|||-|+.++
T Consensus 68 ~hlverppp~ 77 (1143)
T KOG4248|consen 68 IHLVERPPPQ 77 (1143)
T ss_pred EEeeccCCCC
Confidence 9999886554
No 38
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.09 E-value=6.4e-10 Score=73.64 Aligned_cols=72 Identities=25% Similarity=0.273 Sum_probs=56.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeE-EEcCe-----ec-CCCCccccCCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKL-ISAGK-----IL-ENNKTVGQCKVPFGE 79 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrL-Iy~Gk-----~L-~D~~tL~~~~i~~g~ 79 (118)
++|.|.........+..++++.||.+||++++.. .++| ++.||| +|.|+ .| +|+.+|++|++.+|.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~-----~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~ 74 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELV-----VGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGC 74 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHH-----HCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCC
Confidence 5666666443221255699999999999999743 4677 899999 59999 45 789999999999999
Q ss_pred CCCCceEEEEEe
Q 033470 80 LPKGTITMHVVV 91 (118)
Q Consensus 80 ~~~~~~t~hlv~ 91 (118)
+||++-
T Consensus 75 ------~IhVvD 80 (84)
T cd01789 75 ------RIHVID 80 (84)
T ss_pred ------EEEEEe
Confidence 999873
No 39
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.09 E-value=1.3e-09 Score=66.76 Aligned_cols=72 Identities=29% Similarity=0.525 Sum_probs=63.7
Q ss_pred EEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEE
Q 033470 9 LKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMH 88 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~h 88 (118)
+++++..|+.+ .+++.+..+|..+|.+|.. ..++| +..|+|.|.|+.|+|+.+|.+|+|..+. ++|
T Consensus 2 ~~~~~~~gk~~-~~~~~~~~~i~~~k~~i~~-----~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~~------~~~ 67 (75)
T KOG0001|consen 2 IFVKTLDGKTI-TLEVSPSDTIEVVKAKIRD-----KEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEGS------TLH 67 (75)
T ss_pred EEEEecCCCEE-EEEecCCCHHHHHHHHHHh-----hcCCC--CeeEEEEECCEECcCCCcHHHhCCCCCC------EEE
Confidence 56778899997 9999999999999999973 35666 7999999999999999999999999888 999
Q ss_pred EEeCCC
Q 033470 89 VVVQPP 94 (118)
Q Consensus 89 lv~~~~ 94 (118)
++.+..
T Consensus 68 l~~~~~ 73 (75)
T KOG0001|consen 68 LVLSLR 73 (75)
T ss_pred EEEecC
Confidence 887753
No 40
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.07 E-value=3.1e-10 Score=78.11 Aligned_cols=60 Identities=25% Similarity=0.268 Sum_probs=52.8
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeec-CCCCccccCCCCCCCCCCCceEEEEEeCC
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKIL-ENNKTVGQCKVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L-~D~~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
.++|++++||.+||.+|...+ ++| |.+|+|+|.|+.| +|..||++|||..++ +++|.+..
T Consensus 18 ~L~V~~~~TVg~LK~lImQ~f-----~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sgS------vl~Llide 78 (107)
T cd01795 18 ALLVSANQTLKELKIQIMHAF-----SVA--PFDQNLSIDGKILSDDCATLGTLGVIPES------VILLKADE 78 (107)
T ss_pred eEEeCccccHHHHHHHHHHHh-----cCC--cccceeeecCceeccCCccHHhcCCCCCC------EEEEEecC
Confidence 789999999999999998553 455 7999999999998 568999999999998 99998753
No 41
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.86 E-value=6.5e-09 Score=67.44 Aligned_cols=70 Identities=29% Similarity=0.294 Sum_probs=50.4
Q ss_pred EEEEEecCCCeeeeEEe-CCCchHHHHHHHhhccCCCCcccCCCCCCceeE--EEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 8 ELKFRLYDGSDIGPFRY-SPTSTVAMLKERIFSDWPKDKKIVPKTANDIKL--ISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v-~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrL--Iy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+|.++..+.+.+..+++ +++.||++||..|+..++ ..+ +++||| ++.|++|.|++||++||+..|+
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~----~~~--~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~----- 70 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSP----QLT--VNRQSLRLEPKGKSLKDDDTLVDLGVGAGA----- 70 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcC----CCC--cceeEEEeCCCCcccCCcccHhhcCCCCCC-----
Confidence 34444433144323444 488999999999986542 223 688777 6999999999999999999887
Q ss_pred eEEEE
Q 033470 85 ITMHV 89 (118)
Q Consensus 85 ~t~hl 89 (118)
++|+
T Consensus 71 -~lyv 74 (77)
T cd01801 71 -TLYV 74 (77)
T ss_pred -EEEE
Confidence 8875
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.84 E-value=9.2e-09 Score=82.74 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=59.7
Q ss_pred EEEEEEecCCCee--eeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc---C----eecCCCCccccCCCCC
Q 033470 7 VELKFRLYDGSDI--GPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA---G----KILENNKTVGQCKVPF 77 (118)
Q Consensus 7 i~l~~k~~~G~~~--~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~---G----k~L~D~~tL~~~~i~~ 77 (118)
|+|.|+..+|+.+ .++++++++||++||++|+++. ++ .++++|||++. | +.|+|+++|+++|+.+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~-----~~-~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~ 74 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRK-----KK-YYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGD 74 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHc-----CC-CChhheEEEEecCCCCcCccccCCCCCHHhcCCCC
Confidence 4678888888876 4799999999999999998542 22 12799999983 4 4899999999999998
Q ss_pred CCCCCCceEEEEEeCCCCcc
Q 033470 78 GELPKGTITMHVVVQPPLTK 97 (118)
Q Consensus 78 g~~~~~~~t~hlv~~~~~~~ 97 (118)
|+ ++| ++..|++
T Consensus 75 gs------tLy--~kDLGpQ 86 (308)
T PLN02560 75 GG------TVV--FKDLGPQ 86 (308)
T ss_pred Cc------eEE--EEeCCCc
Confidence 87 765 3444543
No 43
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.80 E-value=1.1e-08 Score=69.81 Aligned_cols=59 Identities=31% Similarity=0.518 Sum_probs=47.1
Q ss_pred EEEEecCC-CeeeeEEeC--CCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccC
Q 033470 9 LKFRLYDG-SDIGPFRYS--PTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQC 73 (118)
Q Consensus 9 l~~k~~~G-~~~~~~~v~--~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~ 73 (118)
|.||+.++ -++ +++|. .++||..||+.|++.+|.+.. -..+||||+||+|.|...|+..
T Consensus 3 l~IRFs~sipDl-~L~I~~~~~~Tv~~LK~lIR~~~p~~~s-----~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDL-PLDIPSPNTTTVAWLKQLIRERLPPEPS-----RRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCc-eeecCCCCcccHHHHHHHHHhhcCCCCc-----cccEEeeecCcccCccchhhhh
Confidence 45555553 466 78888 889999999999999875443 6889999999999999888644
No 44
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.76 E-value=2.7e-08 Score=69.87 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=58.4
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCC-CCCce
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGEL-PKGTI 85 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~-~~~~~ 85 (118)
|-|.||--. .++ =+...+++||.+||++|.. .-..| +++|||+..+.+|+|++||++||+..... ++.+.
T Consensus 3 vFlmIrR~K-TTi-F~dakes~tVlelK~~ieg-----I~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA 73 (119)
T cd01788 3 VFLMIRRHK-TTI-FTDAKESTTVYELKRIVEG-----ILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPA 73 (119)
T ss_pred eEEEEEecc-eEE-EeecCCcccHHHHHHHHHH-----HhcCC--hhHheeecCceeecccccHHHcCccccccccCCCC
Confidence 444444322 243 4789999999999999963 22345 89999998888999999999999965443 45566
Q ss_pred EEEEEeCC
Q 033470 86 TMHVVVQP 93 (118)
Q Consensus 86 t~hlv~~~ 93 (118)
++-|.+|.
T Consensus 74 ~vgLa~r~ 81 (119)
T cd01788 74 TVGLAFRS 81 (119)
T ss_pred eEEEEEec
Confidence 88888884
No 45
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.69 E-value=7.1e-08 Score=63.73 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=54.9
Q ss_pred EEEEEEecCC--CeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc----C----eecCCCCccccCCCC
Q 033470 7 VELKFRLYDG--SDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA----G----KILENNKTVGQCKVP 76 (118)
Q Consensus 7 i~l~~k~~~G--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~----G----k~L~D~~tL~~~~i~ 76 (118)
|+|+|..... ..+ +..|+++.||.+||++|... .|+| ++.|||.|. | ...+|..+|.+|++.
T Consensus 2 v~l~It~~~~~~~~~-ekr~~~~~Tv~eLK~kl~~~-----~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~ 73 (87)
T PF14560_consen 2 VKLFITSSNSKQRSV-EKRFPKSITVSELKQKLEKL-----TGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK 73 (87)
T ss_dssp EEEEEEESSSSSSEE-EEEEETTSBHHHHHHHHHHH-----HTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S
T ss_pred EEEEEEeCCCCCeeE-EEEcCCCCCHHHHHHHHHHH-----hCCC--cccEEEEEEecCCCccccccCCCccEeecCCCC
Confidence 6777777655 365 89999999999999999754 4677 899999876 1 134779999999999
Q ss_pred CCCCCCCceEEEEE
Q 033470 77 FGELPKGTITMHVV 90 (118)
Q Consensus 77 ~g~~~~~~~t~hlv 90 (118)
+|. ++|++
T Consensus 74 dg~------~i~V~ 81 (87)
T PF14560_consen 74 DGM------RIHVV 81 (87)
T ss_dssp TTE------EEEEE
T ss_pred CCC------EEEEE
Confidence 998 99976
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.51 E-value=6.7e-07 Score=51.40 Aligned_cols=66 Identities=27% Similarity=0.436 Sum_probs=55.9
Q ss_pred EecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEe
Q 033470 12 RLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVV 91 (118)
Q Consensus 12 k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
+..+|... .+.+.+.+||.+||.+|.++++ .+ ++.++|.+.|..+++...+.++++..++ ++|+..
T Consensus 3 ~~~~~~~~-~~~~~~~~tv~~l~~~i~~~~~-----~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~i~~~~ 68 (69)
T cd00196 3 KLNDGKTV-ELLVPSGTTVADLKEKLAKKLG-----LP--PEQQRLLVNGKILPDSLTLEDYGLQDGD------ELVLVP 68 (69)
T ss_pred EecCCCEE-EEEcCCCCcHHHHHHHHHHHHC-----cC--hHHeEEEECCeECCCCCcHHHcCCCCCC------EEEEEe
Confidence 34467776 8999999999999999997753 33 7999999999999999998899999998 888763
No 47
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.3e-06 Score=71.21 Aligned_cols=63 Identities=29% Similarity=0.544 Sum_probs=53.1
Q ss_pred CeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEE-eCC
Q 033470 17 SDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVV-VQP 93 (118)
Q Consensus 17 ~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv-~~~ 93 (118)
..+ +++|+.+++|.+||+.++.. .++| ++++|+||+||-|.|+.|+..+.+...+ .+|++ +|+
T Consensus 14 h~l-~v~v~~~t~I~~lke~Vak~-----~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qqs------~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGL-PVEVDSDTSIFQLKEVVAKR-----QGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQS------ATHIMLLRP 77 (446)
T ss_pred Cce-eEEEecCCCHHHHHHHHHHh-----hCCC--hhheEEEEeccccccCceeecccccccc------hhhhhccCc
Confidence 455 89999999999999999743 4677 8999999999999999999988877665 78877 444
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.07 E-value=9.7e-06 Score=53.42 Aligned_cols=71 Identities=25% Similarity=0.375 Sum_probs=40.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc--C-eec--CCCCccccCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA--G-KIL--ENNKTVGQCKVPFGE 79 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~--G-k~L--~D~~tL~~~~i~~g~ 79 (118)
+.|-|+||..+|.. -+++++++|+.+|+++|.+..+ +| .+.+.|... + ..| .++.||+++||..|+
T Consensus 3 ~~milRvrS~dG~~--Rie~~~~~t~~~L~~kI~~~l~-----~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 3 SSMILRVRSKDGMK--RIEVSPSSTLSDLKEKISEQLS-----IP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp ---EEEEE-SSEEE--EEEE-TTSBHHHHHHHHHHHS----------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred ccEEEEEECCCCCE--EEEcCCcccHHHHHHHHHHHcC-----CC--CcceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence 57889999999954 6899999999999999997642 33 345555211 1 134 578999999999999
Q ss_pred CCCCceEEEEE
Q 033470 80 LPKGTITMHVV 90 (118)
Q Consensus 80 ~~~~~~t~hlv 90 (118)
.++|.
T Consensus 74 ------mlyL~ 78 (80)
T PF11543_consen 74 ------MLYLK 78 (80)
T ss_dssp ------EEE--
T ss_pred ------EEEEe
Confidence 77653
No 49
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.96 E-value=9e-05 Score=47.92 Aligned_cols=74 Identities=27% Similarity=0.380 Sum_probs=57.0
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE--EcCeecCCC--CccccCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI--SAGKILENN--KTVGQCKVPFG 78 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI--y~Gk~L~D~--~tL~~~~i~~g 78 (118)
+++.+.|.||+.+|+.+ ...|.+++||.+|.+-|..+.. .+. ....+|+ |--+.|.+. .||+++++..+
T Consensus 3 ~~~~~~I~vRlpdG~~l-~~~F~~~~tl~~l~~~v~~~~~-----~~~-~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~ 75 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRL-QRRFPKSDTLQDLYDFVESQLF-----SPE-ESDFELITAFPRRELTDEDSKTLEEAGLLPS 75 (82)
T ss_dssp TSSEEEEEEEETTSTEE-EEEEETTSBHHHHHHHHHHHHH-----CTT-TSSEEEEESSSTEECCSTTTSBTCCCTTSSC
T ss_pred CCCEEEEEEECCCCCEE-EEEECCcchHHHHHHHHHHhcC-----CCC-CccEEEEeCCCCcCCCccccccHHHhcCCCC
Confidence 46889999999999998 9999999999999999975531 111 2237776 556777554 59999998877
Q ss_pred CCCCCceEEEE
Q 033470 79 ELPKGTITMHV 89 (118)
Q Consensus 79 ~~~~~~~t~hl 89 (118)
. +|+|
T Consensus 76 ~------~l~v 80 (82)
T PF00789_consen 76 A------TLIV 80 (82)
T ss_dssp E------EEEE
T ss_pred e------EEEE
Confidence 6 7765
No 50
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.81 E-value=6.5e-05 Score=49.35 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=53.3
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc---Ce--ecCCCCccccCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA---GK--ILENNKTVGQCKVPFG 78 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~---Gk--~L~D~~tL~~~~i~~g 78 (118)
|++.|+-..+.++ .+.|+|..+|..||++|+..| +. ..+|||-|+ |+ .|.+..||++|||=.+
T Consensus 1 iqVtV~q~g~~dl-~l~vnPy~pI~k~K~kI~~~~-----~~---~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~ 68 (80)
T cd01811 1 IQVTVEQTGYSDW-ILRVNPYSPIRKIKEKIRRSR-----NC---SGLQRLSFQEPGGERQLLSSRKSLADYGIFSK 68 (80)
T ss_pred CEEEeeecCCCce-EEEeCCcchHHHHHHHHHHhh-----Cc---ccceEEEeecCCcccccccccccHhhhcceec
Confidence 5788888888897 999999999999999999877 23 378999985 33 6899999999998754
No 51
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.79 E-value=4.7e-05 Score=52.30 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=53.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC--eecCCCCccccCCCCCCCC-CCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG--KILENNKTVGQCKVPFGEL-PKG 83 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G--k~L~D~~tL~~~~i~~g~~-~~~ 83 (118)
+.|.||--.- ++ -+..+++.||-+||.+++.- -..| ++.|||...- ..|+|++||+++|...... |..
T Consensus 3 ~f~~VrR~kt-ti-f~da~es~tV~elK~~l~gi-----~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~ 73 (110)
T KOG4495|consen 3 VFLRVRRHKT-TI-FTDAKESSTVFELKRKLEGI-----LKRP--VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQA 73 (110)
T ss_pred eeeeeeecce-eE-EeecCccccHHHHHHHHHHH-----HhCC--CcchheeecCHHHHhhccchhhhccccccccccCC
Confidence 4444443222 33 47889999999999999742 2345 8999998744 5899999999999876654 555
Q ss_pred ceEEEE
Q 033470 84 TITMHV 89 (118)
Q Consensus 84 ~~t~hl 89 (118)
+.++-|
T Consensus 74 pA~vgL 79 (110)
T KOG4495|consen 74 PATVGL 79 (110)
T ss_pred Cceeee
Confidence 666655
No 52
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.66 E-value=0.00047 Score=45.12 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=53.0
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE--EcCeec-CCCCccccCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI--SAGKIL-ENNKTVGQCKVPFG 78 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI--y~Gk~L-~D~~tL~~~~i~~g 78 (118)
+...+|-||+.+|+.+ ...|..++||.+|.+-|..+.|.. . .....|+ |=.|.| +++.||+++|+...
T Consensus 2 ~p~t~iqiRlpdG~r~-~~rF~~~~tv~~l~~~v~~~~~~~-~-----~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 2 EPTTSIQIRLADGKRL-VQKFNSSHRVSDVRDFIVNARPEF-A-----ARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred CCeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHhCCCC-C-----CCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 3467899999999998 899999999999999998765421 1 2456665 557766 45899999999854
No 53
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.48 E-value=0.0012 Score=43.78 Aligned_cols=66 Identities=18% Similarity=0.347 Sum_probs=54.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC--eecC--------CCCccccCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG--KILE--------NNKTVGQCK 74 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G--k~L~--------D~~tL~~~~ 74 (118)
+.++|.||+.+|+.+ .-.|..++||++|..-|.. ++ . .+...+|+++= |.+. .+.||+++|
T Consensus 3 ~~~~I~iRlp~G~Rl-~rrF~~~~tl~~l~~fv~~-~~----~---~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaG 73 (85)
T cd01774 3 DTVKIVFKLPNGTRV-ERRFLFTQSLRVIHDFLFS-LK----E---TPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAG 73 (85)
T ss_pred ceEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHh-CC----C---CCCcEEEecCCCCccccccccccCcCCCCHHHcC
Confidence 578999999999998 8999999999999999963 22 1 25789999877 7885 377999999
Q ss_pred CCCCC
Q 033470 75 VPFGE 79 (118)
Q Consensus 75 i~~g~ 79 (118)
+....
T Consensus 74 L~~s~ 78 (85)
T cd01774 74 LSNSE 78 (85)
T ss_pred CCCcc
Confidence 98654
No 54
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0006 Score=57.73 Aligned_cols=69 Identities=20% Similarity=0.349 Sum_probs=58.0
Q ss_pred EEEEEEecCCCeeeeEE-eCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCce
Q 033470 7 VELKFRLYDGSDIGPFR-YSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTI 85 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
..+.+|- .|+.+ +++ ++.++|+..+|++++ ...+.| |++||+.+.|+.|.|+--+...+|+.|.
T Consensus 4 ~~v~VKW-~gk~y-~v~~l~~d~t~~vlKaqlf-----~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn~------ 68 (473)
T KOG1872|consen 4 DTVIVKW-GGKKY-PVETLSTDETPSVLKAQLF-----ALTGVP--PERQKVMVKGGLAKDDVDWGALQIKPNE------ 68 (473)
T ss_pred ceEeeee-cCccc-cceeccCCCchHHHHHHHH-----HhcCCC--ccceeEEEecccccccccccccccCCCC------
Confidence 3455553 67777 777 999999999999998 446666 8999999999999999889999999998
Q ss_pred EEEEE
Q 033470 86 TMHVV 90 (118)
Q Consensus 86 t~hlv 90 (118)
|+|+.
T Consensus 69 ~lmMm 73 (473)
T KOG1872|consen 69 TLMMM 73 (473)
T ss_pred EEEee
Confidence 88876
No 55
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.33 E-value=0.00052 Score=44.52 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=49.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE-EcCeecCCCCccccCCCCCCCCCCCce
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI-SAGKILENNKTVGQCKVPFGELPKGTI 85 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI-y~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
+.|.|....|+.+ .+.++...+|++|...|.+....+..+ +......+|. -.|+.|+++.||++++|.+|+
T Consensus 3 ~rVtv~~~~~~~~-Dl~lP~~vpv~~li~~l~~~~~~~~~~-~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd------ 74 (79)
T PF08817_consen 3 CRVTVDAGNGRQV-DLALPADVPVAELIPELVELLGLPGDD-PPGHGQWVLARAGGRPLDPDQTLADAGVRDGD------ 74 (79)
T ss_dssp EEEEEE-TT--EE-EEEEETTSBTTHHHHHHHHHS---S----TT-E-EEEG-GGTEEEETTSBCGGGT--TT-------
T ss_pred EEEEEEcCCCcEE-EEEcCCCCcHHHHHHHHHHHhCCccCC-CCCcceEEEEecCCcccCCcCcHhHcCCCCCC------
Confidence 5677777667787 999999999999999998654211111 1111257777 789999999999999999999
Q ss_pred EEEE
Q 033470 86 TMHV 89 (118)
Q Consensus 86 t~hl 89 (118)
+++|
T Consensus 75 ~L~L 78 (79)
T PF08817_consen 75 VLVL 78 (79)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
No 56
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.32 E-value=0.0018 Score=48.05 Aligned_cols=81 Identities=17% Similarity=0.274 Sum_probs=54.9
Q ss_pred EEEEEEecCC----CeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCc-eeEEE-cCeec--CCCCccccCCCCCC
Q 033470 7 VELKFRLYDG----SDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTAND-IKLIS-AGKIL--ENNKTVGQCKVPFG 78 (118)
Q Consensus 7 i~l~~k~~~G----~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~-qrLIy-~Gk~L--~D~~tL~~~~i~~g 78 (118)
|+|+|.+.+| .++ .+.+++++||.+|+.+|.+.. ++| +.. +-|.+ .|+.| .++..++++.-...
T Consensus 1 i~Vlvss~~g~~lp~tl-~~~lp~~ttv~dL~~~l~~~~-----~~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTL-SLSLPSTTTVSDLKDRLSERL-----PIP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeE-EeeCCCCCcHHHHHHHHHhhc-----CCC--ccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence 6899999999 577 899999999999999998543 333 333 34444 24444 45555555433222
Q ss_pred CCCCCceEEEEEeCCCCcc
Q 033470 79 ELPKGTITMHVVVQPPLTK 97 (118)
Q Consensus 79 ~~~~~~~t~hlv~~~~~~~ 97 (118)
+...++++|+++..+++
T Consensus 73 --~~~~~~l~l~~rl~GGK 89 (162)
T PF13019_consen 73 --DSDFITLRLSLRLRGGK 89 (162)
T ss_pred --CCCceEEEEEEeccCCC
Confidence 12467999999987764
No 57
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0028 Score=43.56 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=63.5
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
++.|+|+|+--+|..+ .|.+.-++...-|...-... .+++ .+.+|++|.|+-+.+..|-++.+..+|+
T Consensus 18 ~~hi~LKV~gqd~~~~-~Fkikr~t~LkKLM~aYc~r-----~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D---- 85 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVV-VFKIKRHTPLKKLMKAYCER-----QGLS--MNSLRFLFDGQRIRETHTPADLEMEDGD---- 85 (99)
T ss_pred cceEEEEEecCCCCEE-EEEeecCChHHHHHHHHHHH-----cCCc--cceEEEEECCcCcCCCCChhhhCCcCCc----
Confidence 3567777777677776 89999999999998887744 3554 6999999999999999999999999999
Q ss_pred ceEEEEEeCCCCc
Q 033470 84 TITMHVVVQPPLT 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
+|-++....++
T Consensus 86 --~Iev~~~q~gG 96 (99)
T KOG1769|consen 86 --EIEVVQEQTGG 96 (99)
T ss_pred --EEEEEeecccC
Confidence 77766554443
No 58
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00018 Score=58.99 Aligned_cols=65 Identities=26% Similarity=0.304 Sum_probs=50.7
Q ss_pred CceEEEEEEecCCC--eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCC
Q 033470 4 EELVELKFRLYDGS--DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCK 74 (118)
Q Consensus 4 ~~~i~l~~k~~~G~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~ 74 (118)
|..+.+.+|..+.+ ++ ++..+-.-||++||.++..-.|.+ |. ..+|||||+||.|.|-..|++.=
T Consensus 7 e~~v~lliks~Nq~y~dl-~i~~dl~wtv~~Lk~hls~VyPsk----pl-~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDL-SISLDLKWTVGDLKVHLSQVYPSK----PL-ELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred CcceEEEecCCCccccce-eeehhhhhhHHHHhhhHhhcCCCC----Cc-hhhHHHHhhccccccchhHHHHH
Confidence 57788888887654 43 566677779999999998877732 22 57899999999999999887753
No 59
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.20 E-value=0.0033 Score=40.91 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=51.4
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE--EcCeecCC---CCccccCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI--SAGKILEN---NKTVGQCKVPFG 78 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI--y~Gk~L~D---~~tL~~~~i~~g 78 (118)
....+|.||+.+|+.+ ...|..++|+.+|.+-|...+.. .....|+ |--|.+.+ +.||.++|+...
T Consensus 2 ~~~~~i~iRlp~G~~~-~~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Ps 72 (79)
T cd01772 2 YTETRIQIRLLDGTTL-KQTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPS 72 (79)
T ss_pred CcEEEEEEECCCCCEE-EEEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCCc
Confidence 3567899999999998 88999999999999999866431 1335554 44566753 589999998866
Q ss_pred C
Q 033470 79 E 79 (118)
Q Consensus 79 ~ 79 (118)
.
T Consensus 73 a 73 (79)
T cd01772 73 A 73 (79)
T ss_pred e
Confidence 5
No 60
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.08 E-value=0.0048 Score=39.90 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=50.4
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE--EcCeecCC---CCccccCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI--SAGKILEN---NKTVGQCKVPFGE 79 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI--y~Gk~L~D---~~tL~~~~i~~g~ 79 (118)
...+|.||+.+|+.+ ...|.+++||.+|.+-|..... .. ....+|+ |-.|.|.+ +.||.++++-...
T Consensus 3 ~~~~I~iRlPdG~ri-~~~F~~~~tl~~v~~~v~~~~~-----~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~ 74 (80)
T smart00166 3 DQCRLQIRLPDGSRL-VRRFPSSDTLRTVYEFVSAALT-----DG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLPSS 74 (80)
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHccc-----CC--CCCEEEEeCCCCcCCccccccCCHHHCCCCCce
Confidence 568899999999998 9999999999999999964421 11 2345664 45567764 4799999986554
No 61
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.99 E-value=0.0074 Score=38.65 Aligned_cols=63 Identities=19% Similarity=0.345 Sum_probs=49.5
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE--cCeecC---CCCccccCCCCC
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS--AGKILE---NNKTVGQCKVPF 77 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy--~Gk~L~---D~~tL~~~~i~~ 77 (118)
..+|.||+.+|+.+ ...|..++||.+|.+-|...... ....+|+. -.|.+. ++.||+++|+..
T Consensus 2 ~t~i~iRlpdG~~~-~~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~ 69 (77)
T cd01767 2 TTKIQIRLPDGKRL-EQRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN 69 (77)
T ss_pred cEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCcc
Confidence 46899999999997 89999999999999999865321 24456653 456674 489999999983
No 62
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.41 E-value=0.036 Score=36.30 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=52.1
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE--EcCeecC---CCCccccCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI--SAGKILE---NNKTVGQCKVPF 77 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI--y~Gk~L~---D~~tL~~~~i~~ 77 (118)
+++.++|.||+.+|+.+ .-.|..++++.+|-.-|..+ +.+ ....+|+ |==|.+. .+.||.++|+..
T Consensus 1 ~~~~~~i~iRlP~G~r~-~rrF~~t~~L~~l~~fv~~~------~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p 71 (80)
T cd01771 1 GEPISKLRVRTPSGDFL-ERRFLGDTPLQVLLNFVASK------GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP 71 (80)
T ss_pred CCCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhc------CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence 46789999999999998 89999999999999999743 222 3566775 3345553 367999999886
Q ss_pred CC
Q 033470 78 GE 79 (118)
Q Consensus 78 g~ 79 (118)
..
T Consensus 72 ~~ 73 (80)
T cd01771 72 QE 73 (80)
T ss_pred Cc
Confidence 65
No 63
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.34 E-value=0.038 Score=36.39 Aligned_cols=71 Identities=15% Similarity=0.342 Sum_probs=56.9
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+.+-|+...|.++ .+.++.-.+|..|-..+++... .+-.+.+-..+|..-.+++|.++..|.+|+|..|+
T Consensus 6 kVTvD~t~y~g~~y-DLrl~d~~pikklIdivwe~~k--is~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD 76 (81)
T COG5417 6 KVTVDFTNYNGGTY-DLRLPDYLPIKKLIDIVWESLK--ISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD 76 (81)
T ss_pred EEEEEeEecCCceE-EEeccccchHHHHHHHHHHHhh--ccccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence 57778888899998 9999999999888887775421 12123234689999999999999999999999998
No 64
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0022 Score=41.18 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=50.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+++.+...-|+.+ -+...+++||.++|..|+++- +-- ++.+.|=--+-+++|.-+|++|.|..|-
T Consensus 2 iev~~nDrLGKKV-RvKCn~dDtiGD~KKliaaQt-----GT~--~~kivl~k~~~i~kd~I~L~dyeihdg~ 66 (73)
T KOG3493|consen 2 IEVVLNDRLGKKV-RVKCNTDDTIGDLKKLIAAQT-----GTR--PEKIVLKKWYTIFKDHITLSDYEIHDGM 66 (73)
T ss_pred ceehhhhhcCceE-EEEeCCcccccCHHHHHHHhh-----CCC--hhHhHHHhhhhhhhcccceeeEEeccCc
Confidence 4455666678887 899999999999999998653 211 4666666667789999999999998774
No 65
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.015 Score=45.11 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=51.9
Q ss_pred EEEEEec-CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 8 ELKFRLY-DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 8 ~l~~k~~-~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.++.++. .++.+ .+.+...+||.++|.++.+. +++. +-.||++|+|++|-|..-|+++++..|.
T Consensus 147 ~lk~rlTtT~~d~-~lta~~~Dtv~eik~~L~Aa-----eg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg~ 211 (231)
T KOG0013|consen 147 ILKLRLTTTREDF-WLTAPHYDTVGEIKRALRAA-----EGVD--PLSQRIFFSGGVLVDKTDLEECKIEKGQ 211 (231)
T ss_pred chHHHhhhhhhhe-eecccCcCcHHHHHHHHHHh-----hccc--hhhheeeccCCceeccccceeeeecCCC
Confidence 3444554 67777 78888899999999999854 3322 5789999999999999999999999884
No 66
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.35 E-value=0.094 Score=34.78 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=49.3
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc--Ceec---CCCCccccCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA--GKIL---ENNKTVGQCKVPFGE 79 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~--Gk~L---~D~~tL~~~~i~~g~ 79 (118)
..-+|.||+.+|+.+ +-.|..++++.+|-.-|.. ++ .+ ++..+|+-+ =|.+ +-+.||.++|+...+
T Consensus 4 ~~t~i~vRlP~G~r~-~rrF~~~~~L~~v~~fv~~-~g-----~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~ 74 (82)
T cd01773 4 PKARLMLRYPDGKRE-QIALPEQAKLLALVRHVQS-KG-----YP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQE 74 (82)
T ss_pred CeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHh-cC-----CC--CCCEEEecCCCCcccCCcccCCCHHHcCCCCCc
Confidence 456899999999998 9999999999999999875 21 12 455666522 3344 446899999998776
No 67
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.03 Score=38.23 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=54.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+.|+|++-.-+|..+ -|.+..+++-.-|=.....+. +. +.+.+|++|.|+-++-++|-++.+...++
T Consensus 22 t~hinLkvv~qd~tel-fFkiKktT~f~klm~af~~rq--GK-----~m~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 22 TKHINLKVVDQDGTEL-FFKIKKTTTFKKLMDAFSRRQ--GK-----NMSSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred ccccceEEecCCCCEE-EEEEeccchHHHHHHHHHHHh--Cc-----CcceeEEEEcceecCCCCChhhcCCccch
Confidence 3556777766788887 899999999988877776553 22 25899999999999999999999988777
No 68
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.54 E-value=0.1 Score=33.86 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=44.8
Q ss_pred eCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccC-CCCCCCCCCCceEEEEEeCC
Q 033470 24 YSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQC-KVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 24 v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~-~i~~g~~~~~~~t~hlv~~~ 93 (118)
|.++++|.+|++.+... | +... -....|.+.|+.|+|...|++. ++.+|. +++|+..+
T Consensus 1 v~~~d~v~dvrq~L~~~-~---~t~~--~Tn~~L~~~g~~L~~~~el~~i~~~~~~~------~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES-P---ETCY--LTNFSLEHNGQRLDDFVELSEIEGIKDGC------VLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhC-c---cccc--eeEEEEEECCCccCCchhhhhhhCCCCCc------EEEEEecC
Confidence 46889999999999744 2 1112 5788999999999999999877 477776 89988554
No 69
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=93.38 E-value=0.58 Score=29.44 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=51.2
Q ss_pred EEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE----cC--eecCCCCccccCCCCCCCCCCCc
Q 033470 11 FRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS----AG--KILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 11 ~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy----~G--k~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
|++++|+.. .+++++++|+.+|=+.|.+.. ++. +.+-.=|-| .| ..|+.+++|.+.....+. +
T Consensus 1 V~llD~~~~-~~~v~~~~t~~~l~~~v~~~l-----~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~----~ 69 (80)
T PF09379_consen 1 VRLLDGTTK-TFEVDPKTTGQDLLEQVCDKL-----GLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNP----P 69 (80)
T ss_dssp EEESSEEEE-EEEEETTSBHHHHHHHHHHHH-----TTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSS----S
T ss_pred CCCcCCCcE-EEEEcCCCcHHHHHHHHHHHc-----CCC-CccEEEEEEeecCCCcceeccCcccHHHHcCCCCC----C
Confidence 578899987 999999999999999998652 332 256666767 33 368999999888665333 5
Q ss_pred eEEEEEeC
Q 033470 85 ITMHVVVQ 92 (118)
Q Consensus 85 ~t~hlv~~ 92 (118)
.++|+-++
T Consensus 70 ~~l~frvk 77 (80)
T PF09379_consen 70 FTLYFRVK 77 (80)
T ss_dssp EEEEEEES
T ss_pred EEEEEEEE
Confidence 57777654
No 70
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=92.33 E-value=0.89 Score=28.50 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=43.8
Q ss_pred CCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEeCC
Q 033470 16 GSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 16 G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
|.....++++...||.+|.+.+...+|.. .... ....++..+|+...+ +..+.+|+ .+.++..-
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~-~~~~--~~~~~v~vNg~~v~~-----~~~l~~gD------~v~i~ppv 77 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGL-LEEL--LARVRIAVNGEYVRL-----DTPLKDGD------EVAIIPPV 77 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchH-HHhh--hhcEEEEECCeEcCC-----CcccCCCC------EEEEeCCC
Confidence 44322678888899999999999887631 1111 356778889998873 35678888 78776443
No 71
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=92.12 E-value=0.39 Score=40.09 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=51.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc--Ceec-CCCCccccCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA--GKIL-ENNKTVGQCKVPFG 78 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~--Gk~L-~D~~tL~~~~i~~g 78 (118)
+.+-.|-||+.+|..+ -..|+.+-||.+|+..|...-|.+- ...+-|++. -|-| +|+.||+++++...
T Consensus 303 ~PtTsIQIRLanG~Rl-V~~fN~sHTv~DIR~fI~~aRp~~~------~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRL-VLKFNHSHTVSDIREFIDTARPGDS------STYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred CCcceEEEEecCCcee-eeeccCcccHHHHHHHHHhcCCCCc------CCceeeeecCCCcccCCcchhHHhccchhh
Confidence 4667899999999998 8899999999999999987655322 234444433 3455 67899999999854
No 72
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.93 E-value=0.35 Score=38.62 Aligned_cols=79 Identities=20% Similarity=0.170 Sum_probs=50.4
Q ss_pred EEEEEecCC-CeeeeEEeCCCchHHHHHHHhhccCCCCcccCCC-CCCceeEEEcCeecCCCCccccCCCCCCCCCCCce
Q 033470 8 ELKFRLYDG-SDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPK-TANDIKLISAGKILENNKTVGQCKVPFGELPKGTI 85 (118)
Q Consensus 8 ~l~~k~~~G-~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~-~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|.+..-++ -.++....+.+.||+|++..+..+ +....|. ....+|+--.|+-|.|+.+|++|+...|.
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~---~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~------ 72 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAK---NLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGA------ 72 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHh---hhccCccchhheeeccCCCccccchhHHHHhccCCCC------
Confidence 345544444 233346667888999999888754 2221110 02334455679999999999999999887
Q ss_pred EEEEEeCCCCcc
Q 033470 86 TMHVVVQPPLTK 97 (118)
Q Consensus 86 t~hlv~~~~~~~ 97 (118)
|+ .++..+++
T Consensus 73 ~i--~vKDLGpQ 82 (297)
T KOG1639|consen 73 TI--YVKDLGPQ 82 (297)
T ss_pred EE--EEeccCCc
Confidence 66 44555554
No 73
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=90.72 E-value=1.8 Score=27.90 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=43.9
Q ss_pred CCC-eeeeEEeCCCchHHHHHHHhhccCCCCcccC-CC---CCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEE
Q 033470 15 DGS-DIGPFRYSPTSTVAMLKERIFSDWPKDKKIV-PK---TANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHV 89 (118)
Q Consensus 15 ~G~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~i-p~---~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hl 89 (118)
.|. .. .++++ ..||.+|.+.+.+++|..+..+ .. -...+++..+|+..+++.. ..+++|+ .+.+
T Consensus 13 ~g~~~~-~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd------ev~i 81 (88)
T TIGR01687 13 TGKKSE-EIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD------VVAI 81 (88)
T ss_pred hCCceE-EEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC------EEEE
Confidence 353 44 67776 8999999999998887422211 00 0134777888888765532 5678888 7776
Q ss_pred EeCC
Q 033470 90 VVQP 93 (118)
Q Consensus 90 v~~~ 93 (118)
...-
T Consensus 82 ~Ppv 85 (88)
T TIGR01687 82 FPPV 85 (88)
T ss_pred eCCC
Confidence 6443
No 74
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=90.69 E-value=0.97 Score=28.60 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=38.9
Q ss_pred ecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 13 LYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 13 ~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
..+++.+ .+.+.|++++.+|=+....+. ++. +++-.|.|++|.|+-+.++.-.|++.|+
T Consensus 3 ~~~~rr~-~vkvtp~~~l~~VL~eac~k~-----~l~--~~~~~L~h~~k~ldlslp~R~snL~n~a 61 (65)
T PF11470_consen 3 CYNFRRF-KVKVTPNTTLNQVLEEACKKF-----GLD--PSSYDLKHNNKPLDLSLPFRLSNLPNNA 61 (65)
T ss_dssp -TTS-EE-EE---TTSBHHHHHHHHHHHT-----T----GGG-EEEETTEEESSS-BHHHH---SS-
T ss_pred ccCCcEE-EEEECCCCCHHHHHHHHHHHc-----CCC--ccceEEEECCEEeccccceeecCCCCCC
Confidence 4578887 999999999999888777653 333 5688999999999999999999999887
No 75
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=90.25 E-value=1.1 Score=34.86 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=43.8
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeE-EEcC-----eecC-CCCccccCCCCCCCCCCCceEEEEE
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKL-ISAG-----KILE-NNKTVGQCKVPFGELPKGTITMHVV 90 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrL-Iy~G-----k~L~-D~~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
+-.++++.||+++|.+++-. .+-+ ++.++| +|.| -.|+ ++..|..|+..+|- .+|++
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~-----~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~------rihvi 79 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELL-----TGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDGL------RIHVI 79 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhh-----hCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCce------EEEEE
Confidence 56789999999999999632 3444 788888 6776 2464 57778899999887 88876
No 76
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=90.22 E-value=1.2 Score=27.57 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=45.8
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEeCC
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
.+.+....||.+|.+.+..++|... . ....++..+|++..+ . -.+..+.+|+ .+.++..-
T Consensus 15 ~~~~~~~~tv~~ll~~l~~~~p~~~---~--~~~~~v~vN~~~v~~-~-~~~~~l~~gD------~V~i~ppv 74 (77)
T PF02597_consen 15 EIEVPEGSTVRDLLEALAERYPELA---L--RDRVAVAVNGEIVPD-D-GLDTPLKDGD------EVAILPPV 74 (77)
T ss_dssp EEEESSTSBHHHHHHHHCHHTGGGH---T--TTTEEEEETTEEEGG-G-TTTSBEETTE------EEEEEEST
T ss_pred EEecCCCCcHHHHHHHHHhhccccc---c--CccEEEEECCEEcCC-c-cCCcCcCCCC------EEEEECCC
Confidence 6889999999999999998876333 1 478899999999988 2 4455667787 77766443
No 77
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=88.68 E-value=3.4 Score=26.32 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=42.4
Q ss_pred EEEEEEec------CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCC
Q 033470 7 VELKFRLY------DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGEL 80 (118)
Q Consensus 7 i~l~~k~~------~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~ 80 (118)
|+|+|+.. .|.+-..++++...||.+|++.+....| +.... -....+..+|+...++ .-+.+|+
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p-~l~~~---~~~~~vavN~~~v~~~-----~~l~dgD- 71 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFP-SLEEV---RSCCVLALNEEYTTES-----AALKDGD- 71 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHCh-hHHHH---hhCcEEEECCEEcCCC-----cCcCCCC-
Confidence 45555553 3533237888889999999999986654 22211 1223467788876543 3566777
Q ss_pred CCCceEEEEE
Q 033470 81 PKGTITMHVV 90 (118)
Q Consensus 81 ~~~~~t~hlv 90 (118)
+|-+.
T Consensus 72 -----eVai~ 76 (82)
T PLN02799 72 -----ELAII 76 (82)
T ss_pred -----EEEEe
Confidence 66655
No 78
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=88.65 E-value=1.7 Score=27.71 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=42.1
Q ss_pred CCCeeeeEEeCCC-chHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEe
Q 033470 15 DGSDIGPFRYSPT-STVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVV 91 (118)
Q Consensus 15 ~G~~~~~~~v~~~-~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
.|....+++++.+ .||.+|++.+.+..|. .... ...+++..+|+...++ ..+++|+ .+-+..
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~-l~~~---~~~~~v~vn~~~v~~~-----~~l~dgD------evai~P 75 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPE-LAAS---RGQVMVAVNEEYVTDD-----ALLNEGD------EVAFIP 75 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCch-hhhh---ccceEEEECCEEcCCC-----cCcCCCC------EEEEeC
Confidence 4543226788876 8999999999887662 2111 2456788889888753 5677777 666553
No 79
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=88.14 E-value=3.3 Score=28.27 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=53.4
Q ss_pred ceEEEEEEecCC-CeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCC-ceeEEEcCe--ecCCCCccccCC-----C
Q 033470 5 ELVELKFRLYDG-SDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTAN-DIKLISAGK--ILENNKTVGQCK-----V 75 (118)
Q Consensus 5 ~~i~l~~k~~~G-~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~-~qrLIy~Gk--~L~D~~tL~~~~-----i 75 (118)
..+.|.+...+. ..+ .+.++++.|+.+|-+.+..++ ....+....++ +--|==.|+ +|-.+..|.++. +
T Consensus 16 ~~i~v~i~~~~~~~~~-t~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl 93 (108)
T smart00144 16 NKILIVVHLEKDQQTK-TLKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCL 93 (108)
T ss_pred CeEEEEEEEccCceeE-EEEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHH
Confidence 455666665443 344 899999999999999888764 23222222233 566655677 688888898885 6
Q ss_pred CCCCCCCCceEEEEEeCC
Q 033470 76 PFGELPKGTITMHVVVQP 93 (118)
Q Consensus 76 ~~g~~~~~~~t~hlv~~~ 93 (118)
..|. .+||++..
T Consensus 94 ~~~~------~~~L~L~~ 105 (108)
T smart00144 94 KNGR------EPHLVLMT 105 (108)
T ss_pred hcCC------CceEEEEe
Confidence 6666 66776653
No 80
>PRK06437 hypothetical protein; Provisional
Probab=87.19 E-value=5.4 Score=24.92 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=35.8
Q ss_pred CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 15 DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 15 ~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.++.. +++++...||.+|=+.+ +++ +..+-++.+|+++. .++-+.+|+
T Consensus 9 g~~~~-~~~i~~~~tv~dLL~~L---------gi~--~~~vaV~vNg~iv~-----~~~~L~dgD 56 (67)
T PRK06437 9 GHINK-TIEIDHELTVNDIIKDL---------GLD--EEEYVVIVNGSPVL-----EDHNVKKED 56 (67)
T ss_pred CCcce-EEEcCCCCcHHHHHHHc---------CCC--CccEEEEECCEECC-----CceEcCCCC
Confidence 44554 78999999999987776 233 57888899999997 445566777
No 81
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=86.74 E-value=2.8 Score=25.97 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=29.7
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCcccc
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQ 72 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~ 72 (118)
+++++.+.|..+||..+. | -++ -+||+|-..+++..|.+
T Consensus 9 ~~~~~~~~tl~~lr~~~k----------~--~~D-I~I~NGF~~~~d~~L~e 47 (57)
T PF14453_consen 9 EIETEENTTLFELRKESK----------P--DAD-IVILNGFPTKEDIELKE 47 (57)
T ss_pred EEEcCCCcCHHHHHHhhC----------C--CCC-EEEEcCcccCCccccCC
Confidence 568999999999999985 1 122 56999999888865543
No 82
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=86.35 E-value=1.7 Score=31.40 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=46.1
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC------eecCCCCccccCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG------KILENNKTVGQCKVP 76 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G------k~L~D~~tL~~~~i~ 76 (118)
..+.|+|.+.+|... .+.+++++||.+|-+.++.+. +++ .....-|.+.. ..|+...+|.+....
T Consensus 2 ~~~~~~V~l~dg~~~-~~~~~~~~t~~ev~~~v~~~~-----~l~-~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 2 KPRVLKVYLLDGTTL-EFEVDSSTTAEELLETVCRKL-----GIR-ESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred CcEEEEEEecCCCEE-EEEECCCCCHHHHHHHHHHHh-----CCC-ccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 467899999999997 999999999999999998653 343 24555554321 356666666655443
No 83
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=86.32 E-value=3.8 Score=35.80 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=49.2
Q ss_pred ceEEEEEEecCC--CeeeeEEeCCCchHHHHHHHhhcc-CCC-CcccCCCCCCceeEEE-c---Ce-ecCCCC-------
Q 033470 5 ELVELKFRLYDG--SDIGPFRYSPTSTVAMLKERIFSD-WPK-DKKIVPKTANDIKLIS-A---GK-ILENNK------- 68 (118)
Q Consensus 5 ~~i~l~~k~~~G--~~~~~~~v~~~~TV~~lK~~I~~~-wp~-~~~~ip~~~~~qrLIy-~---Gk-~L~D~~------- 68 (118)
.++.|.+....+ ..+ ++.|=..+||.++|++|... |.. .+.-.|. ++++-|-+ . |+ +|.|.+
T Consensus 188 ~~ltl~v~~~~~~~~~i-~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~-~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEI-PVKVLDCDTITQVKEKILDAVYKNTPYSQRPR-ADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -EEEEEEECTTTSSTCE-EEEEETTSBHHHHHHHHHHHHTTTS-GGGS---GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred EEEEEEEEecCCCCceE-EEEEEecCcccHHHHHHHHHHHcCCCCCCCCC-ccccceeeecCCCCcccccCCCCCcccCC
Confidence 566677554332 355 88888899999999999852 100 0112332 56777633 2 34 677753
Q ss_pred ------ccccCCCCCCCCCCCceEEEEEeCC
Q 033470 69 ------TVGQCKVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 69 ------tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
||+.|+|++|+ +|-|+.+.
T Consensus 266 ~wkrLNTL~HY~V~dga------~vaLv~k~ 290 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDGA------TVALVPKQ 290 (539)
T ss_dssp TEEE--BHHHHT--TTE------EEEEEES-
T ss_pred CceEeccHhhcCCCCCc------eEEEeecc
Confidence 67889999998 88888765
No 84
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=85.70 E-value=5 Score=25.14 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=32.2
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+++++..||.+|-+.+. ++ +....+..+|+++.. +..+.+|+
T Consensus 17 ~~~~~~~~tv~~ll~~l~---------~~--~~~v~v~vNg~iv~~-----~~~l~~gD 59 (70)
T PRK08364 17 EIEWRKGMKVADILRAVG---------FN--TESAIAKVNGKVALE-----DDPVKDGD 59 (70)
T ss_pred EEEcCCCCcHHHHHHHcC---------CC--CccEEEEECCEECCC-----CcCcCCCC
Confidence 678899999999988872 22 466788899998854 34566677
No 85
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=85.03 E-value=4 Score=26.28 Aligned_cols=69 Identities=13% Similarity=0.255 Sum_probs=48.3
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeE-EEcCeecCCCCccccCCCCCCCCCCCceEEEEEeC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKL-ISAGKILENNKTVGQCKVPFGELPKGTITMHVVVQ 92 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrL-Iy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
++|+.. .+|..+....-.+.++-.++- .-.+.| ++.-.| =-+|.+|+-++.+++||+..+- +++|.++
T Consensus 3 VNGqPv-~VEANvnaPLh~v~akALe~s--gNvgQP--~ENWElkDe~G~vlD~~kKveD~Gftngv------kLFLsLK 71 (76)
T PF10790_consen 3 VNGQPV-QVEANVNAPLHPVRAKALEQS--GNVGQP--PENWELKDESGQVLDVNKKVEDFGFTNGV------KLFLSLK 71 (76)
T ss_pred eCCCce-eeecCCCCcchHHHHHHHhhc--cccCCC--cccceeeccCCcEeeccchhhhccccccc------eEEEEee
Confidence 478776 788888877776666655431 112334 344444 2478899999999999999886 9999877
Q ss_pred C
Q 033470 93 P 93 (118)
Q Consensus 93 ~ 93 (118)
.
T Consensus 72 A 72 (76)
T PF10790_consen 72 A 72 (76)
T ss_pred c
Confidence 4
No 86
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=82.39 E-value=4.4 Score=26.81 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=33.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG 61 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G 61 (118)
++++|+. ++ .+.+.++.+..+|+++|.++. .+| ++.++|-|.-
T Consensus 5 vKV~f~~----tI-aIrvp~~~~y~~L~~ki~~kL-----kl~--~e~i~LsYkd 47 (80)
T cd06406 5 VKVHFKY----TV-AIQVARGLSYATLLQKISSKL-----ELP--AEHITLSYKS 47 (80)
T ss_pred EEEEEEE----EE-EEEcCCCCCHHHHHHHHHHHh-----CCC--chhcEEEecc
Confidence 4555543 77 899999999999999998654 455 6889998864
No 87
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=81.30 E-value=5.5 Score=26.57 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=28.9
Q ss_pred EEEEecCCCeeeeEEeCCCchHHHHHHHhhccC
Q 033470 9 LKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDW 41 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~w 41 (118)
.+|+..+|+.+ -|.+.|+.++.+|++.|+.+.
T Consensus 3 FK~~~~~Grvh-Rf~~~~s~~~~~L~~~I~~Rl 34 (86)
T cd06409 3 FKFKDPKGRVH-RFRLRPSESLEELRTLISQRL 34 (86)
T ss_pred EEeeCCCCCEE-EEEecCCCCHHHHHHHHHHHh
Confidence 57888999986 999999999999999999775
No 88
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=81.24 E-value=9.9 Score=23.17 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=35.8
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++|+ +++++...||.+|.+.+. ++ ...+.+.++|+++..+. -++..+.+|+
T Consensus 4 iNg~---~~~~~~~~tv~~ll~~l~---------~~--~~~i~V~vNg~~v~~~~-~~~~~L~~gD 54 (65)
T cd00565 4 VNGE---PREVEEGATLAELLEELG---------LD--PRGVAVALNGEIVPRSE-WASTPLQDGD 54 (65)
T ss_pred ECCe---EEEcCCCCCHHHHHHHcC---------CC--CCcEEEEECCEEcCHHH-cCceecCCCC
Confidence 3564 468888899999998883 22 57788899999885542 2234577777
No 89
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=80.41 E-value=3.5 Score=30.46 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=38.6
Q ss_pred ceEEEEEEecCCCeeeeEEeCC-CchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSP-TSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQC 73 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~-~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~ 73 (118)
+.+.|+++ -|+-+ ++++. .+.+..+++...+.+|-.+. |+-|+++....|+++|
T Consensus 66 ~~veL~V~--vGri~--lele~~~~~ie~I~~iCee~lpf~y~-----------i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 66 EEVELTVK--VGRII--LELEDEEDVIEKIREICEEVLPFGYD-----------IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEEE--EeEEE--EEecCcHHHHHHHHHHHHHhCCCceE-----------eeeeEEeccCCchhhh
Confidence 34555554 46544 78887 88889999888766652221 4579999999999998
No 90
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=76.62 E-value=3.2 Score=27.87 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=48.6
Q ss_pred CceEEEEEEec-CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCe--ecCCCCccccCC-----C
Q 033470 4 EELVELKFRLY-DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGK--ILENNKTVGQCK-----V 75 (118)
Q Consensus 4 ~~~i~l~~k~~-~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk--~L~D~~tL~~~~-----i 75 (118)
...+.|.|... ++..+ +|.++.+.|+.+|-+.+..++- ..-..+...++--|==.|+ .|-.+..|.+|. +
T Consensus 14 ~~~i~v~v~~~~~~~~~-t~~~~~~~t~~~li~~~l~k~~-~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl 91 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSF-TFQVDPNSTPEELIAQALKKKL-KDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCL 91 (106)
T ss_dssp SSEEEEEEEETTCSEEE-EEEEETTS-HHHHHHHHHHHHH-HHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHH
T ss_pred CCeEEEEEEEcCCCcEE-EEEECCCCCHHHHHHHHHHHHH-hhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHH
Confidence 46788888888 44565 9999999999999888886621 1111111122556655666 688888998885 4
Q ss_pred CCCCCCCCceEEEEEe
Q 033470 76 PFGELPKGTITMHVVV 91 (118)
Q Consensus 76 ~~g~~~~~~~t~hlv~ 91 (118)
..+. .+||++
T Consensus 92 ~~~~------~~~L~L 101 (106)
T PF00794_consen 92 KRGK------DPHLVL 101 (106)
T ss_dssp HCT--------EEEEE
T ss_pred hcCC------CcEEEE
Confidence 5555 566554
No 91
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=75.67 E-value=5.7 Score=29.24 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=39.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQC 73 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~ 73 (118)
+.|.|+++ -|+-+ ++++..+.+..+++...+.+|=.++ |.-|+++.+..|+++|
T Consensus 65 ~~veL~V~--VGrI~--le~~~~~~i~~I~eiC~e~~pF~y~-----------i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 65 EDVELRVQ--VGRII--LELEDEDIVEEIEEICKEMLPFGYE-----------VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEEE--EeEEE--EEecCHHHHHHHHHHHHhhCCCceE-----------eeeeeEeecCCchhhh
Confidence 44555554 46544 6777888999999988766652221 4679999999999988
No 92
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=73.99 E-value=1.8 Score=35.28 Aligned_cols=50 Identities=36% Similarity=0.527 Sum_probs=39.7
Q ss_pred cCCCeeeeEEeC-CCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccc
Q 033470 14 YDGSDIGPFRYS-PTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVG 71 (118)
Q Consensus 14 ~~G~~~~~~~v~-~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~ 71 (118)
.+|..+ .+.+. .+..|..+|.++. +...++ ++-|++.|-|.+|.|+.+++
T Consensus 290 ~dg~~~-~~~~~~~~~~~~~~k~k~~-----~~~~i~--~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 290 ADGQVI-KITVQSLSENVASLKEKIA-----DESQIP--ANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCcee-eeccccccccccccccccc-----cccccc--hhheeeccCCcccCcccccc
Confidence 467765 66666 7788999999996 556677 89999999999999986553
No 93
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=73.64 E-value=13 Score=23.24 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=33.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG 61 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G 61 (118)
+.+++...++... .+.+..+.|..+|+.+|++.+|. + ...++|-|..
T Consensus 2 ~~vK~~~~~~~~~-~~~~~~~~s~~~L~~~i~~~~~~-----~--~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYGGDIRR-IISLPSDVSFDDLRSKIREKFGL-----L--DEDFQLKYKD 48 (84)
T ss_dssp EEEEEEETTEEEE-EEEECSTSHHHHHHHHHHHHHTT-----S--TSSEEEEEEE
T ss_pred EEEEEEECCeeEE-EEEcCCCCCHHHHHHHHHHHhCC-----C--CccEEEEeeC
Confidence 5566665454432 48999999999999999977642 2 4778888864
No 94
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=73.47 E-value=7.7 Score=25.16 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=32.0
Q ss_pred EEEEecCCCeeeeEEeCC-CchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCC
Q 033470 9 LKFRLYDGSDIGPFRYSP-TSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCK 74 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~-~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~ 74 (118)
|.+|+.+.+.+..+.|+. ..||.+||..|.++ ..-+. ....-| .|-|+.|-++|.
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~---~~lg~---~~dfdL-----~i~na~t~eeY~ 56 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEK---KKLGK---GTDFDL-----VIYNAQTGEEYK 56 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHH---HT------TTTEEE-----EEEESSS--EE-
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHH---hCCCc---CCcCCE-----EEECCCCCCccC
Confidence 456777777766788864 46999999999754 11122 233444 455677777775
No 95
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=72.70 E-value=9.1 Score=28.34 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=38.6
Q ss_pred eEEEEEEecCCCeeeeEEeCCCc-hHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccC
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTS-TVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQC 73 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~-TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~ 73 (118)
.+.|++ ..|+.+ +++++.+ +++.+++-+.+.+|=+++ ++-|+++.+..|+.+|
T Consensus 75 ~~eL~V--kvGri~--~eie~e~~~~e~ie~ic~e~lPf~y~-----------v~vG~F~r~kpTVTDy 128 (165)
T COG4055 75 EIELKV--KVGRII--LEIEDEDETMEKIEEICDEMLPFGYE-----------VRVGKFTRRKPTVTDY 128 (165)
T ss_pred EEEEEE--EeeEEE--EEecCcHhHHHHHHHHHHHhCCCcee-----------eeeeeeeccCCcchhh
Confidence 344444 457654 7887775 999998888777664443 4679999999999988
No 96
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=70.18 E-value=22 Score=21.59 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=34.5
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++|+ +++++...||.+|.+.+. ++ +....+.++|+++..++ -.++.+.+|+
T Consensus 3 iNg~---~~~~~~~~tv~~ll~~l~---------~~--~~~v~v~vN~~iv~~~~-~~~~~L~~gD 53 (64)
T TIGR01683 3 VNGE---PVEVEDGLTLAALLESLG---------LD--PRRVAVAVNGEIVPRSE-WDDTILKEGD 53 (64)
T ss_pred ECCe---EEEcCCCCcHHHHHHHcC---------CC--CCeEEEEECCEEcCHHH-cCceecCCCC
Confidence 4664 457788899999998873 22 46778889999884221 2234577777
No 97
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=70.14 E-value=23 Score=22.41 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=31.8
Q ss_pred CCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE--E----cCeecCCCCc
Q 033470 16 GSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI--S----AGKILENNKT 69 (118)
Q Consensus 16 G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI--y----~Gk~L~D~~t 69 (118)
+.+++++.|+.++|..+|-+.+.++. ++..+++.-.|+ + ..|.|+|++.
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~-----~l~~~~~~y~L~ev~~~~~~er~L~~~e~ 65 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKF-----GLDDDPEDYALVEVLGDGGLERLLLPDEC 65 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHh-----CCcCCcccEEEEEEECCceEEEEeCCCCC
Confidence 34446999999999999999988664 222235566554 2 3356665543
No 98
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=68.82 E-value=11 Score=25.17 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=40.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccC----CCCcccCCCCCCceeEEEcCeecCCCCccccC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDW----PKDKKIVPKTANDIKLISAGKILENNKTVGQC 73 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~w----p~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~ 73 (118)
.-|+|-..+|.+. .+.|++.+|+.++-+.++.+= ..+|.- .+..=-++--|.++|-+-|-+.
T Consensus 3 ~vvkv~~~Dg~sK-~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~L----vE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASK-SLEVDERMTARDVCQLLVDKNHCQDDSSWTL----VEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCee-EEEEcCCCcHHHHHHHHHHHhCCCCCCCeEE----EEecchhhhhhhccchHHHHHH
Confidence 3466777899995 999999999999998888531 011210 1112224556788887766443
No 99
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=65.68 E-value=24 Score=23.63 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=33.4
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCe-ecCCCC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGK-ILENNK 68 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk-~L~D~~ 68 (118)
.+|.+.+++-|.|.+|+++|-..+++++. .+ .|.+-....++-++. .|.|+.
T Consensus 10 ~sgct~KTL~V~P~~tt~~vc~lcA~Kf~--V~-qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 10 NSGCTGKTLLVRPYITTEDVCQLCAEKFK--VT-QPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred CCCceeeeeecCCCCcHHHHHHHHHHHhc--cC-ChhheeEEEEECCcEEEcCccc
Confidence 35666678999999999999999998762 22 232233333333444 466654
No 100
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=65.66 E-value=28 Score=21.86 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=32.8
Q ss_pred EEEEEecCCC---eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE
Q 033470 8 ELKFRLYDGS---DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI 58 (118)
Q Consensus 8 ~l~~k~~~G~---~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI 58 (118)
-|+|-..++. .++.+.+++++|+.+|-+.+.++. +++.++....|.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~-----~l~~~~~~y~L~ 52 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKF-----GLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHT-----TTSSSGGGEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHh-----CCCCCCCCEEEE
Confidence 3555556665 145999999999999999998764 233446777774
No 101
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=64.47 E-value=2.2 Score=34.81 Aligned_cols=46 Identities=28% Similarity=0.405 Sum_probs=0.0
Q ss_pred CchHHHHHHHhhccC-CCC----cccCCCCCCcee-----EEEcCeecCCCCccccCC
Q 033470 27 TSTVAMLKERIFSDW-PKD----KKIVPKTANDIK-----LISAGKILENNKTVGQCK 74 (118)
Q Consensus 27 ~~TV~~lK~~I~~~w-p~~----~~~ip~~~~~qr-----LIy~Gk~L~D~~tL~~~~ 74 (118)
++||.++|..+.... +.+ ...+| .+-++ |+|+-|-+-|++||.+.-
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 689999999998511 000 23566 68888 999999999999997664
No 102
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=62.91 E-value=10 Score=26.05 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=24.4
Q ss_pred eEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEeCCCC
Q 033470 56 KLISAGKILENNKTVGQCKVPFGELPKGTITMHVVVQPPL 95 (118)
Q Consensus 56 rLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~~~ 95 (118)
.|-|+||.|..+.+|++| +-.++ ++-+++-|..+..+
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNE--KtKiivKl~~~g~g 39 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNE--KTKIIVKLQKRGQG 39 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCc--ceeEEEEeccCCCC
Confidence 478999999999999999 33332 33445554444333
No 103
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=62.81 E-value=31 Score=20.76 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=32.4
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++|+. ++++...||.+|=..+ +++ ....-+.++|.++.-.. -.+.-+++|+
T Consensus 5 vNG~~---~~~~~~~tl~~lL~~l---------~~~--~~~vav~vNg~iv~r~~-~~~~~l~~gD 55 (66)
T PRK05659 5 LNGEP---RELPDGESVAALLARE---------GLA--GRRVAVEVNGEIVPRSQ-HASTALREGD 55 (66)
T ss_pred ECCeE---EEcCCCCCHHHHHHhc---------CCC--CCeEEEEECCeEeCHHH-cCcccCCCCC
Confidence 37754 5788889999887665 223 46677788898776322 1223466676
No 104
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=62.40 E-value=16 Score=22.77 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=32.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA 60 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~ 60 (118)
+.++++. .|.. ..+.++++.|-.+|+.+|....+ .+ ....+|=|.
T Consensus 2 ~~vK~~~-~~~~-~~~~~~~~~s~~dL~~~i~~~~~-----~~--~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRY-GGET-RRLSVPRDISFEDLRSKVAKRFG-----LD--NQSFTLKYQ 46 (81)
T ss_pred ccEEEEE-CCEE-EEEEECCCCCHHHHHHHHHHHhC-----CC--CCCeEEEEE
Confidence 4555655 4445 48999999999999999987653 22 356788776
No 105
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=61.88 E-value=18 Score=23.09 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=36.3
Q ss_pred EEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC--eecCCC
Q 033470 9 LKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG--KILENN 67 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G--k~L~D~ 67 (118)
+++.+.+|+.. .+.+.|++||.++=+++.++ -++..+.-.+++..++ +.++.+
T Consensus 2 ~~V~LPng~~t-~V~vrpg~ti~d~L~~~c~k-----r~l~~~~~~v~~~~~~~~~~~~~~ 56 (72)
T cd01760 2 CRVYLPNGQRT-VVPVRPGMSVRDVLAKACKK-----RGLNPECCDVFLLGLDEKKPLDLD 56 (72)
T ss_pred EEEECcCCCeE-EEEECCCCCHHHHHHHHHHH-----cCCCHHHEEEEEecCCCcCCcCch
Confidence 56778899986 89999999999998888755 2333223445555555 444433
No 106
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=61.66 E-value=5.1 Score=26.47 Aligned_cols=12 Identities=25% Similarity=0.982 Sum_probs=10.3
Q ss_pred cCCCCccEEeeC
Q 033470 107 PQKKNFCSCSIL 118 (118)
Q Consensus 107 ~~~~~~c~C~i~ 118 (118)
++.+++|+|++|
T Consensus 101 pp~h~nCRC~~i 112 (112)
T PF04233_consen 101 PPEHPNCRCTVI 112 (112)
T ss_pred CCCCCCCeeeeC
Confidence 677889999986
No 107
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=61.54 E-value=16 Score=27.16 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=27.7
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
+.|+|+|.+.+|..+ .+....++||.++-..
T Consensus 42 e~i~Itfv~~dG~~~-~i~g~vGdtlLd~ah~ 72 (159)
T KOG3309|consen 42 EDIKITFVDPDGEEI-KIKGKVGDTLLDAAHE 72 (159)
T ss_pred ceEEEEEECCCCCEE-EeeeecchHHHHHHHH
Confidence 669999999999998 9999999999988544
No 108
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=60.99 E-value=14 Score=26.34 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=34.6
Q ss_pred EeCC-CchHHHHHHHhhccCCCCcc-----cCCCCCCceeEEEcC-----------------eec---CCCCccccCCCC
Q 033470 23 RYSP-TSTVAMLKERIFSDWPKDKK-----IVPKTANDIKLISAG-----------------KIL---ENNKTVGQCKVP 76 (118)
Q Consensus 23 ~v~~-~~TV~~lK~~I~~~wp~~~~-----~ip~~~~~qrLIy~G-----------------k~L---~D~~tL~~~~i~ 76 (118)
.++. ++||.+|++.+.+.-+.... ... -+.+|+++.. -+| +|+.||.++||.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~--yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~ 98 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVK--YDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVE 98 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeee--cceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCC
Confidence 3676 89999999999864322211 111 3455555432 366 778888888888
Q ss_pred CCC
Q 033470 77 FGE 79 (118)
Q Consensus 77 ~g~ 79 (118)
...
T Consensus 99 nET 101 (122)
T PF10209_consen 99 NET 101 (122)
T ss_pred ccc
Confidence 654
No 109
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=60.77 E-value=47 Score=28.23 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=52.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE-EcCeecCCCCccccCCCCCCCCCCCce
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI-SAGKILENNKTVGQCKVPFGELPKGTI 85 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI-y~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.+++|.... +.+ .+-++.+..|++|=-.|.+--.++..+ +.....-.|- -+|..|+-+.||++.+|.+|+
T Consensus 3 ~RVtV~~~~-~~~-DlaLPa~~PvaellP~ll~~~~~~~~~-~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~------ 73 (452)
T TIGR02958 3 CRVTVLAGR-RAV-DVALPADVPVAELIPDLVDLLDDRGAA-ELGAVRWALARAGGSPLDPDASLAEAGVRDGE------ 73 (452)
T ss_pred EEEEEeeCC-eee-eeecCCCCcHHHHHHHHHHHhCccccc-CCCCcceEEecCCCCCCCCCCCHHHcCCCCCC------
Confidence 345665433 345 788899999998877776543221110 1112334443 266799999999999999999
Q ss_pred EEEEEeCCCCc
Q 033470 86 TMHVVVQPPLT 96 (118)
Q Consensus 86 t~hlv~~~~~~ 96 (118)
++||..+....
T Consensus 74 ~L~L~p~~~~~ 84 (452)
T TIGR02958 74 LLVLVPASATE 84 (452)
T ss_pred eEEEeeCCCCC
Confidence 99998754443
No 110
>PRK01777 hypothetical protein; Validated
Probab=60.25 E-value=49 Score=22.20 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=43.1
Q ss_pred ceEEEEEEecCC--CeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 5 ELVELKFRLYDG--SDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 5 ~~i~l~~k~~~G--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.|+|.|-...- .....+++++++||.++=... .++.+..++- .+...+.-.||...-+ .-+.+|+
T Consensus 2 ~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s--gi~~~~pei~--~~~~~vgI~Gk~v~~d-----~~L~dGD--- 69 (95)
T PRK01777 2 GKIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS--GLLELRTDID--LAKNKVGIYSRPAKLT-----DVLRDGD--- 69 (95)
T ss_pred CeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc--CCCccCcccc--cccceEEEeCeECCCC-----CcCCCCC---
Confidence 355666555432 222478999999999886554 3432222221 2223555566665443 3567788
Q ss_pred CceEEEEEeCCCCccc
Q 033470 83 GTITMHVVVQPPLTKA 98 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~~ 98 (118)
.+-+. ++....|
T Consensus 70 ---RVeIy-rPL~~DP 81 (95)
T PRK01777 70 ---RVEIY-RPLLADP 81 (95)
T ss_pred ---EEEEe-cCCCCCH
Confidence 77765 4444433
No 111
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=57.52 E-value=18 Score=23.66 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=24.4
Q ss_pred EEEecCCCeeeeEEeCCCchHHHHHHHhhccCC
Q 033470 10 KFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWP 42 (118)
Q Consensus 10 ~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp 42 (118)
+||..-|..+.-+.++++.+..+|++.|++..+
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~ 34 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFK 34 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 344443444448999999999999999987653
No 112
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=56.96 E-value=56 Score=21.82 Aligned_cols=72 Identities=10% Similarity=0.152 Sum_probs=42.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC--eecCCCCccccCCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG--KILENNKTVGQCKVPFGE 79 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G--k~L~D~~tL~~~~i~~g~ 79 (118)
+.|.-++-..=...-+-||..+|+.++-++++..- -+.--.|.+-.-+|+-+.| +.+..+.|+++.||..-+
T Consensus 4 fPl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~Hs-VGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e 77 (85)
T PF06234_consen 4 FPLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHS-VGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPME 77 (85)
T ss_dssp EEEEEEETT-SBEEEEEEETT-BHHHHHHHHHTTT-TTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTE
T ss_pred cceeEeeccceEEEEEEeCCCCcHHHHHHHHhhhh-cceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcce
Confidence 33444443332223578999999999999998541 0111122123468888999 999999999999998654
No 113
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=56.58 E-value=28 Score=27.06 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCCCceEEEEEEecCC--------CeeeeEEeCCCchHHHHHHHhhccC
Q 033470 1 MPEEELVELKFRLYDG--------SDIGPFRYSPTSTVAMLKERIFSDW 41 (118)
Q Consensus 1 ~~~~~~i~l~~k~~~G--------~~~~~~~v~~~~TV~~lK~~I~~~w 41 (118)
|+|+..|+|+|+-.++ +.+ .+++++.+||.++=..|.+++
T Consensus 1 ~~~~~~v~~~i~R~~~~~~~~~~~~~~-~v~~~~~~tvl~~L~~ik~~~ 48 (244)
T PRK12385 1 MAEMKNLKIEVLRYNPEVDTEPHSQTY-EVPYDETTSLLDALGYIKDNL 48 (244)
T ss_pred CCCCcEEEEEEEeeCCCCCCCceeEEE-EeeCCCCCcHHHHHHHHHHhc
Confidence 8899999999764432 233 566679999999988887554
No 114
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=55.62 E-value=51 Score=20.94 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=24.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDW 41 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~w 41 (118)
++|++-...+..++.+.+.+++|+.+|=..+.++.
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~ 39 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKF 39 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHh
Confidence 44444332233446999999999999988887653
No 115
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=55.61 E-value=38 Score=22.23 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=28.9
Q ss_pred eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC
Q 033470 18 DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG 61 (118)
Q Consensus 18 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G 61 (118)
++ .+.+.+..+..+|.++|+++.+ .+ ++..+|-|.-
T Consensus 8 TV-ai~v~~g~~y~~L~~~ls~kL~-----l~--~~~~~LSY~~ 43 (78)
T cd06411 8 TV-ALRAPRGADVSSLRALLSQALP-----QQ--AQRGQLSYRA 43 (78)
T ss_pred EE-EEEccCCCCHHHHHHHHHHHhc-----CC--hhhcEEEecC
Confidence 55 7899999999999999997753 23 6788888753
No 116
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=54.64 E-value=45 Score=19.94 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=35.4
Q ss_pred CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEE
Q 033470 15 DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVV 90 (118)
Q Consensus 15 ~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
+|+. +++++..||++|-+.+. ++ ..+.+-++|++..... -.+.-+.+|+ .+.++
T Consensus 6 Ng~~---~~~~~~~tl~~ll~~l~---------~~---~~~~v~vN~~~v~~~~-~~~~~L~~gD------~vei~ 59 (65)
T PRK06944 6 NQQT---LSLPDGATVADALAAYG---------AR---PPFAVAVNGDFVARTQ-HAARALAAGD------RLDLV 59 (65)
T ss_pred CCEE---EECCCCCcHHHHHHhhC---------CC---CCeEEEECCEEcCchh-cccccCCCCC------EEEEE
Confidence 6754 57788899999988773 11 2367788898875321 1223467788 77765
No 117
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=54.24 E-value=24 Score=29.56 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=47.7
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCC--CccccCCCCCCC
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENN--KTVGQCKVPFGE 79 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~--~tL~~~~i~~g~ 79 (118)
++..-...-+++ ++.+........++..++-. .+++ .+..-|||+++.|.++ .+|.++|+..++
T Consensus 4 tvs~~l~~~~~~-~i~v~~dg~L~nl~aL~~~d-----~g~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 4 TVSVALNFEKKF-PIPVTTDGELNNLAALCWKD-----TGIV--YDPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred EEEEEecceeee-ccccccccchhhHHHHHHHH-----hCcc--cchhhcccCCCccccchhhhhhhcccccce
Confidence 333333355565 88999899999999998632 2455 6788999999999765 677899988887
No 118
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=53.80 E-value=51 Score=21.49 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=35.7
Q ss_pred CeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE-cCeecCCCCccccCCCCCCCCCCCceEEEEE
Q 033470 17 SDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS-AGKILENNKTVGQCKVPFGELPKGTITMHVV 90 (118)
Q Consensus 17 ~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy-~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
..+ .+.+++..||.++=+.+ ++| -.++.+|. +|+.-+= +|.+.+|+ .+.+.
T Consensus 23 ~~~-~~~~~~~~tvkd~IEsL---------GVP--~tEV~~i~vNG~~v~~-----~~~~~~Gd------~v~V~ 74 (81)
T PF14451_consen 23 GPF-THPFDGGATVKDVIESL---------GVP--HTEVGLILVNGRPVDF-----DYRLKDGD------RVAVY 74 (81)
T ss_pred Cce-EEecCCCCcHHHHHHHc---------CCC--hHHeEEEEECCEECCC-----cccCCCCC------EEEEE
Confidence 354 78899999999988776 577 57776654 5554432 47788888 66654
No 119
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=52.71 E-value=50 Score=30.05 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=35.7
Q ss_pred ecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeec
Q 033470 13 LYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKIL 64 (118)
Q Consensus 13 ~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L 64 (118)
+.++..+ .+-++++.|+..+++.|... .++| .+.|-|+|.|...
T Consensus 321 ~~~~~~~-~~~~~~~ntl~~~~~~I~~~-----Tgip--e~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSH-EYYVHADNTLHSLIERISKQ-----TGIP--EGKQELLFEGGLS 364 (732)
T ss_pred eccceEE-EEecChhhhHHHHHHHHHHh-----hCCC--CccceeeeecCcc
Confidence 3466665 89999999999999999843 5777 6889999998854
No 120
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=51.78 E-value=52 Score=19.86 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=32.1
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++|+.+ +++ ..||.+|.+.+. ++ +..+.+-.+|+++.- ...++..+.+|+
T Consensus 5 ~Ng~~~---~~~-~~tl~~Ll~~l~---------~~--~~~vavavN~~iv~~-~~~~~~~L~dgD 54 (65)
T PRK06488 5 VNGETL---QTE-ATTLALLLAELD---------YE--GNWLATAVNGELVHK-EARAQFVLHEGD 54 (65)
T ss_pred ECCeEE---EcC-cCcHHHHHHHcC---------CC--CCeEEEEECCEEcCH-HHcCccccCCCC
Confidence 377654 454 468999988762 22 355778888888862 223445677777
No 121
>KOG4261 consensus Talin [Cytoskeleton]
Probab=49.29 E-value=24 Score=32.63 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=44.3
Q ss_pred EEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE------EcCeecCCCCccccCCCCCCC
Q 033470 10 KFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI------SAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 10 ~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI------y~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.++...++..+++-|+|+++|-+--..|++++|....+ | .+..|. -.|-.|+.+.||..|=+..++
T Consensus 5 sl~i~~~~v~ktmqfepst~vyda~~~ire~~~~~~~~-a---~~yglf~~de~~~k~~wle~grt~~~y~~~n~d 76 (1003)
T KOG4261|consen 5 SLKISSANVVKTMQFEPSTLVYDACKVIREKFAEADVG-A---SEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGD 76 (1003)
T ss_pred EEEEEecceeeeeeecCchHHHHHHHHHHHHhhhcccC-c---hhcceeeecCCcccceeecCCccHHHHHHhccc
Confidence 33334444447999999999999999999888754443 3 444443 235577888888777555555
No 122
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=48.87 E-value=62 Score=19.91 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=36.6
Q ss_pred EEEEEEecCCC-ee--eeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCC
Q 033470 7 VELKFRLYDGS-DI--GPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILEN 66 (118)
Q Consensus 7 i~l~~k~~~G~-~~--~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D 66 (118)
|.+.|.+..|. .. .++.|+.+.|..+|=+.|-+-.+.+.+ +-...++..|..|.+
T Consensus 2 v~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~-----~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 2 VQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEE-----PVPFDFLINGEELRT 59 (65)
T ss_pred EEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCC-----CCcEEEEECCEEeec
Confidence 67888887772 11 378999999999987766543322223 234677888877754
No 123
>smart00455 RBD Raf-like Ras-binding domain.
Probab=48.23 E-value=66 Score=20.20 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=35.9
Q ss_pred EEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC--eecC
Q 033470 9 LKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG--KILE 65 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G--k~L~ 65 (118)
.++.+.+|+.. .+.+-|+.||.++=+.+.++ .+.. ++...|...| +.|+
T Consensus 2 ~~v~LP~~~~~-~V~vrpg~tl~e~L~~~~~k-----r~l~--~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRT-VVKVRPGKTVRDALAKALKK-----RGLN--PECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEE-EEEECCCCCHHHHHHHHHHH-----cCCC--HHHEEEEEcCCCccee
Confidence 45677899997 99999999999998888865 2333 5666666644 3454
No 124
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=48.11 E-value=21 Score=26.10 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=39.7
Q ss_pred CchHHHHHHHhhccCCCCcc-c---------------CCCCCCceeEEEcCe-ecCCCCccccCCCCCCCCCCCceEEEE
Q 033470 27 TSTVAMLKERIFSDWPKDKK-I---------------VPKTANDIKLISAGK-ILENNKTVGQCKVPFGELPKGTITMHV 89 (118)
Q Consensus 27 ~~TV~~lK~~I~~~wp~~~~-~---------------ip~~~~~qrLIy~Gk-~L~D~~tL~~~~i~~g~~~~~~~t~hl 89 (118)
+.|..+|-..|.+.-|.... + -+. +.++=-.+.|+ ..+|++||.+++++-|+ -+.+
T Consensus 61 datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~y~-~RevG~t~~g~Kg~ddnktL~~~kf~iGD------~lDV 133 (151)
T KOG3391|consen 61 DATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPRYI-VREVGTTCLGRKGIDDNKTLQQTKFEIGD------YLDV 133 (151)
T ss_pred hhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCCce-eeeecccccCcccCCccchhhhCCccccc------eEEE
Confidence 46777887777765443221 0 000 12222234465 45899999999999999 6666
Q ss_pred EeCCCCcccc
Q 033470 90 VVQPPLTKAK 99 (118)
Q Consensus 90 v~~~~~~~~~ 99 (118)
.+.++...+.
T Consensus 134 aI~~p~~~~~ 143 (151)
T KOG3391|consen 134 AITPPNRRPP 143 (151)
T ss_pred EecCcccCCC
Confidence 6665544433
No 125
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=47.92 E-value=17 Score=23.69 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=17.0
Q ss_pred eEEeCCCchHHHHHHHhhcc
Q 033470 21 PFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~ 40 (118)
+++++.+.|+.++|+.++.+
T Consensus 3 ~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 3 PLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEETT-BHHHHHHHHHHH
T ss_pred EEEccCcCcHHHHHHHHHHH
Confidence 78999999999999999854
No 126
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=47.67 E-value=78 Score=20.71 Aligned_cols=50 Identities=8% Similarity=0.171 Sum_probs=34.2
Q ss_pred CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 15 DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 15 ~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+|+. .+++...||.+|=+.+. ++ +..+-+-++|.++.- ..-++.-+.+|+
T Consensus 24 NG~~---~~~~~~~tl~~LL~~l~---------~~--~~~vAVevNg~iVpr-~~w~~t~L~egD 73 (84)
T PRK06083 24 NDQS---IQVDISSSLAQIIAQLS---------LP--ELGCVFAINNQVVPR-SEWQSTVLSSGD 73 (84)
T ss_pred CCeE---EEcCCCCcHHHHHHHcC---------CC--CceEEEEECCEEeCH-HHcCcccCCCCC
Confidence 7864 57788889988866651 23 466677789988843 234556688888
No 127
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=46.87 E-value=63 Score=21.42 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=33.0
Q ss_pred EEeCCCchHHHHHHHhhccCCCCcccCCCC----CCceeEEEcCeecCCCCcc--ccCCCCCCCCCCCceEEEEEeC
Q 033470 22 FRYSPTSTVAMLKERIFSDWPKDKKIVPKT----ANDIKLISAGKILENNKTV--GQCKVPFGELPKGTITMHVVVQ 92 (118)
Q Consensus 22 ~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~----~~~qrLIy~Gk~L~D~~tL--~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
++.+...||.+|=+.|.++.|...+..=.. ...+.+..+|+-. +.| .++.+++|+ +|++...
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di---~~l~g~~t~L~dgD------~v~i~P~ 90 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDW---ELLGEEDYILEDGD------HVVFIST 90 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccc---cccCCcccCCCCcC------EEEEECC
Confidence 344467799999999987765333211000 1123333333321 122 246788898 7776643
No 128
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=45.98 E-value=58 Score=28.12 Aligned_cols=72 Identities=15% Similarity=0.304 Sum_probs=50.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE----cCe--ecCCCCccccCCCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS----AGK--ILENNKTVGQCKVPFGEL 80 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy----~Gk--~L~D~~tL~~~~i~~g~~ 80 (118)
|-++||...|.. -++++++++.+.|-.+|.+..-.+ .+++++-+-- +|- -+..+.|+-++|+..|.
T Consensus 1 Mi~rfRsk~G~~--Rve~qe~d~lg~l~~kll~~~~~n-----~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGq- 72 (571)
T COG5100 1 MIFRFRSKEGQR--RVEVQESDVLGMLSPKLLAFFEVN-----YSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQ- 72 (571)
T ss_pred CeEEEecCCCce--eeeccccchhhhhhHHHHhhhccC-----CCccceEEEeCCCCCceeeecccccChhhhccccCc-
Confidence 357899989975 589999999999999998654222 2234444422 122 15567899999999998
Q ss_pred CCCceEEEEEe
Q 033470 81 PKGTITMHVVV 91 (118)
Q Consensus 81 ~~~~~t~hlv~ 91 (118)
.+.|-.
T Consensus 73 -----mLyl~y 78 (571)
T COG5100 73 -----MLYLEY 78 (571)
T ss_pred -----EEEEEe
Confidence 666654
No 129
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=45.97 E-value=60 Score=24.54 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=34.1
Q ss_pred eEEEEEEecCCC---eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeE--EEcCee---cCCCCccccC
Q 033470 6 LVELKFRLYDGS---DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKL--ISAGKI---LENNKTVGQC 73 (118)
Q Consensus 6 ~i~l~~k~~~G~---~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrL--Iy~Gk~---L~D~~tL~~~ 73 (118)
.+++.+...+-. .+ .+.++.+.||.+|-+.+..+-. .. ..+...+|| +++||+ +..+.+|++.
T Consensus 20 ~~kv~w~~~~~~~~~~~-~~~vpk~~tV~Dll~~l~~k~~--~~--~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEY-ELLVPKTGTVSDLLEELQKKVG--FS--EEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp -EEEEEE-TTS-EE-EE-EE--BTT-BHHHHHHHHHTT--------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEEECCCCcceeEE-EEEECCCCCHHHHHHHHHHHcC--CC--cCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 344555433322 34 7888999999999999986531 11 112457777 788886 6778888766
No 130
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=45.59 E-value=42 Score=20.68 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=24.3
Q ss_pred EEEEEecCCCeeeeEEeC-CCchHHHHHHHhhccCC
Q 033470 8 ELKFRLYDGSDIGPFRYS-PTSTVAMLKERIFSDWP 42 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~-~~~TV~~lK~~I~~~wp 42 (118)
.|+++.. |... .+.++ .+.|..+|+++|.+.++
T Consensus 2 ~vK~~~~-~~~~-~~~~~~~~~s~~~L~~~i~~~~~ 35 (81)
T cd05992 2 RVKVKYG-GEIR-RFVVVSRSISFEDLRSKIAEKFG 35 (81)
T ss_pred cEEEEec-CCCE-EEEEecCCCCHHHHHHHHHHHhC
Confidence 3455544 3343 78888 89999999999997764
No 131
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=45.33 E-value=21 Score=20.04 Aligned_cols=13 Identities=8% Similarity=0.416 Sum_probs=11.4
Q ss_pred CCceeEEEcCeec
Q 033470 52 ANDIKLISAGKIL 64 (118)
Q Consensus 52 ~~~qrLIy~Gk~L 64 (118)
..++.+.|+|++.
T Consensus 5 ~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 5 TAQLTIFYGGQVC 17 (36)
T ss_pred CCcEEEEECCEEE
Confidence 6889999999975
No 132
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=43.99 E-value=73 Score=19.36 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=33.5
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++|+. ++++...||.+|-+.+. . . ...+.+-.+|+++.-+ .-++.-+.+|+
T Consensus 5 vNg~~---~~~~~~~tl~~ll~~l~------~---~--~~~vaVavN~~iv~r~-~w~~~~L~~gD 55 (66)
T PRK08053 5 FNDQP---MQCAAGQTVHELLEQLN------Q---L--QPGAALAINQQIIPRE-QWAQHIVQDGD 55 (66)
T ss_pred ECCeE---EEcCCCCCHHHHHHHcC------C---C--CCcEEEEECCEEeChH-HcCccccCCCC
Confidence 37754 57788899999988763 1 1 3457888899988522 12233567777
No 133
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=43.98 E-value=47 Score=24.03 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=25.5
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHH
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAML 33 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~l 33 (118)
.+.++|+|...+|... ++++++..|+.+.
T Consensus 33 ~g~v~I~~~~~dG~~~-~v~~~~G~sLLea 61 (143)
T PTZ00490 33 PGKVKVCVKKRDGTHC-DVEVPVGMSLMHA 61 (143)
T ss_pred CCcEEEEEEcCCCCEE-EEEECCCccHHHH
Confidence 4689999999999986 9999999999875
No 134
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.23 E-value=37 Score=27.52 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=31.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhcc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~ 40 (118)
..-.|-||+.+|+++ ...|.+..+..+|+.-|.-+
T Consensus 209 s~crlQiRl~DG~Tl-~~tF~a~E~L~~VR~wVd~n 243 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTL-TQTFNARETLAAVRLWVDLN 243 (290)
T ss_pred cceEEEEEcCCCCee-eeecCchhhHHHHHHHHHHh
Confidence 456788999999998 99999999999999999755
No 135
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=41.34 E-value=82 Score=19.89 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=31.0
Q ss_pred CCCeeeeEEeCC-CchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 15 DGSDIGPFRYSP-TSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 15 ~G~~~~~~~v~~-~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.|.. .+++++ ..||.+|++.|.++.|. +... .....++.--+|+.-.+ +.-+.+|+
T Consensus 14 ~g~~--~~~v~~~~~tv~~l~~~L~~~~~~-~~~~-~~~~~~~~aVN~~~~~~-----~~~l~dgD 70 (81)
T PRK11130 14 VGTD--ALELAADFPTVEALRQHLAQKGDR-WALA-LEDGKLLAAVNQTLVSF-----DHPLTDGD 70 (81)
T ss_pred hCCc--eEEecCCCCCHHHHHHHHHHhCcc-HHhh-hcCCCEEEEECCEEcCC-----CCCCCCCC
Confidence 4543 355544 47999999999877652 2110 01234454445544332 23577777
No 136
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=38.70 E-value=29 Score=22.73 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=17.8
Q ss_pred eEEeCCCchHHHHHHHhhcc
Q 033470 21 PFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~ 40 (118)
.+.++.+.|+.++|+.++++
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQ 22 (78)
T ss_pred eEEccccccHHHHHHHHHHH
Confidence 68899999999999999854
No 137
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=38.32 E-value=70 Score=19.22 Aligned_cols=29 Identities=31% Similarity=0.237 Sum_probs=23.0
Q ss_pred EEEEecCCCeeeeEEeCCCchHHHHHHHhhcc
Q 033470 9 LKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~ 40 (118)
|++.+.+|+.. +++...|+.++-+.|...
T Consensus 1 I~v~lpdG~~~---~~~~g~T~~d~A~~I~~~ 29 (60)
T PF02824_consen 1 IRVYLPDGSIK---ELPEGSTVLDVAYSIHSS 29 (60)
T ss_dssp EEEEETTSCEE---EEETTBBHHHHHHHHSHH
T ss_pred CEEECCCCCee---eCCCCCCHHHHHHHHCHH
Confidence 45666899754 688999999999999744
No 138
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=37.22 E-value=1.1e+02 Score=19.22 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=37.1
Q ss_pred EEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccc
Q 033470 9 LKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVG 71 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~ 71 (118)
+++-+.+|+.. .+.+-|+.||.++=.++.++ .++..+.-.+++.-..+.|+.+...+
T Consensus 3 ~~v~LP~~q~t-~V~vrpg~ti~d~L~~~~~k-----r~L~~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 3 CRVHLPNGQRT-VVQVRPGMTIRDALSKACKK-----RGLNPECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp EEEEETTTEEE-EEEE-TTSBHHHHHHHHHHT-----TT--CCCEEEEEEEEEEEE-TTSBGG
T ss_pred EEEECCCCCEE-EEEEcCCCCHHHHHHHHHHH-----cCCCHHHEEEEEcCCCccccCCCcee
Confidence 57788999987 89999999999988888754 23332233444444666777665543
No 139
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=37.12 E-value=59 Score=22.37 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=23.3
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
|+|+|...+|+.. .+++.+..|+.+.=..
T Consensus 1 ~~V~fi~~~G~~~-~v~~~~G~tLl~a~~~ 29 (117)
T PLN02593 1 ISVTFVDKDGEER-TVKAPVGMSLLEAAHE 29 (117)
T ss_pred CEEEEEcCCCCEE-EEEECCCCcHHHHHHH
Confidence 5788888899885 8999999998876443
No 140
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=35.76 E-value=73 Score=21.34 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.0
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhcc
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~ 40 (118)
++.|.|-+.+|..+ .+++.-+++..+|=+.+..+
T Consensus 1 ~V~L~V~Lpdg~~i-~V~v~~s~~a~~Vleav~~k 34 (87)
T cd01777 1 DVELRIALPDKATV-TVRVRKNATTDQVYQALVAK 34 (87)
T ss_pred CeEEEEEccCCCEE-EEEEEEcccHHHHHHHHHHH
Confidence 47889999999998 99999999999998888765
No 141
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=34.90 E-value=75 Score=23.47 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCCCceEEEEEEecCCCeeeeEEeCCCchHHHHHH
Q 033470 1 MPEEELVELKFRLYDGSDIGPFRYSPTSTVAMLKE 35 (118)
Q Consensus 1 ~~~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~ 35 (118)
|.-.+.+.|.|+ ++|+.+ +++++|.++..++=.
T Consensus 1 ~~~~~~~~i~~~-vNG~~~-~~~~~~~~~Ll~~LR 33 (159)
T PRK09908 1 MNHSETITIECT-INGMPF-QLHAAPGTPLSELLR 33 (159)
T ss_pred CCCCCceeEEEE-ECCEEE-EEecCCCCcHHHHHH
Confidence 344455667665 489887 899999998886543
No 142
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=34.53 E-value=42 Score=28.02 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=47.5
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC---eec--CCCCccccCCCCCCC
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG---KIL--ENNKTVGQCKVPFGE 79 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G---k~L--~D~~tL~~~~i~~g~ 79 (118)
.|.||+.+|+.. -..|-.+++|.-|-.-+... ..+-+ -...+|+++= |-| ..+.||.++||....
T Consensus 279 ~i~vR~pdG~R~-qrkf~~sepv~ll~~~~~s~----~dg~~--k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~ 348 (356)
T KOG1364|consen 279 SIQVRFPDGRRK-QRKFLKSEPVQLLWSFCYSH----MDGSD--KKRFKLVQAIPASKTLDYGADATFKEAGLANSE 348 (356)
T ss_pred EEEEecCCccHH-HHhhccccHHHHHHHHHHHh----hcccc--cccceeeecccchhhhhccccchHHHhccCccc
Confidence 488999999985 77888888888776666543 12223 4778999887 545 458899999999653
No 143
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.46 E-value=24 Score=30.67 Aligned_cols=50 Identities=26% Similarity=0.229 Sum_probs=39.6
Q ss_pred EEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCC
Q 033470 22 FRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFG 78 (118)
Q Consensus 22 ~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g 78 (118)
++..-..|-.+|...|+.++ +++ -+.+|.|-+||+|.-.+||++-|++..
T Consensus 54 ~k~sL~i~Gselqa~iakkl-----gi~--enhvKci~~~Kils~~ktlaeQglk~n 103 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKL-----GIK--ENHVKCIINGKILSCRKTLAEQGLKIN 103 (568)
T ss_pred hhcccccccHHHHHHHHHHc-----CCc--hhhhheeeccceeecccchhhhhhhhh
Confidence 44445566778999998664 566 458999999999999999999988754
No 144
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=34.42 E-value=1.1e+02 Score=18.88 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCeeeeEEeC---CCchHHHHHHHh
Q 033470 6 LVELKFRLYDGSDIGPFRYS---PTSTVAMLKERI 37 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~---~~~TV~~lK~~I 37 (118)
.++|.|++.+|+.+ .+.++ ++.|-+++|...
T Consensus 2 tL~l~F~~~~gk~~-ti~i~~pk~~lt~~~V~~~m 35 (69)
T PF11148_consen 2 TLELVFKTEDGKTF-TISIPNPKEDLTEAEVKAAM 35 (69)
T ss_pred EEEEEEEcCCCCEE-EEEcCCCCCCCCHHHHHHHH
Confidence 58899999999987 88774 455666776554
No 145
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=34.22 E-value=1.1e+02 Score=21.47 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=31.4
Q ss_pred ceEEEEEEecCCCee-eeEEeCCCchHHHHHHHhhccCCCC
Q 033470 5 ELVELKFRLYDGSDI-GPFRYSPTSTVAMLKERIFSDWPKD 44 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~-~~~~v~~~~TV~~lK~~I~~~wp~~ 44 (118)
+-|..+|...+++.. +.+.|++++|+.+|-+.+.+++-.|
T Consensus 22 gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 22 GVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 557788887776532 6799999999999999998886534
No 146
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=34.14 E-value=2e+02 Score=23.70 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=33.4
Q ss_pred CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 15 DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 15 ~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+|+. ++++.+.||.+|=+.+. ++ ...+-+.++|+++.-+ --.++-+.+|+
T Consensus 6 NGk~---~el~e~~TL~dLL~~L~---------i~--~~~VAVeVNgeIVpr~-~w~~t~LkeGD 55 (326)
T PRK11840 6 NGEP---RQVPAGLTIAALLAELG---------LA--PKKVAVERNLEIVPRS-EYGQVALEEGD 55 (326)
T ss_pred CCEE---EecCCCCcHHHHHHHcC---------CC--CCeEEEEECCEECCHH-HcCccccCCCC
Confidence 6754 57788889998877652 23 5678888888888522 13344567776
No 147
>PF00894 Luteo_coat: Luteovirus coat protein; InterPro: IPR001517 Barley yellow dwarf virus (BYDV) can be separated into two groups based on serological relationships, presumably governed by the viral capsid structure []. Coding regions of coat proteins have been identified for the MAV-PS1, P-PAV (group 1) and NY-RPV (group 2) isolates of BYDV. Group 1 proteins show 71% sequence similarity to each other, 51% similarity to those of group 2, and a high degree of similarity to those from other luteoviruses (including coat proteins from Beet western yellows virus (BWYV) [] and Potato leafroll virus (PLrV) [, ]). Among luteovirus coat protein sequences in general, several highly conserved domains can be identified, while other domains differentiate group 1 isolates from group 2 and other luteoviruses. Sequence comparisons between the genomes of PLrV, BWYV and BYDV have revealed ~65% protein sequence similarity between the capsid proteins of BWYV and PLrV and ~45% similarity between BYDV and PLrV []. The N-terminal regions of these sequences, like those of many plant virus capsid proteins, is highly basic. These regions may be involved in protein-RNA interaction.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=33.98 E-value=1.4e+02 Score=21.74 Aligned_cols=54 Identities=17% Similarity=0.371 Sum_probs=35.0
Q ss_pred EEEEEEec-----CCCeeeeEEeCCCchHHHHHHHhhc---------cCCCCcc----cCCCCCCceeEEEcCe
Q 033470 7 VELKFRLY-----DGSDIGPFRYSPTSTVAMLKERIFS---------DWPKDKK----IVPKTANDIKLISAGK 62 (118)
Q Consensus 7 i~l~~k~~-----~G~~~~~~~v~~~~TV~~lK~~I~~---------~wp~~~~----~ip~~~~~qrLIy~Gk 62 (118)
|.|.|+.- .| .+ .+|+|+..+...|.-.|-. .||+..- =.+.+.+|.||+|.|.
T Consensus 46 v~v~f~SeAsstt~G-sI-ayElD~~ck~s~l~S~in~f~I~k~g~ksf~a~~InG~~w~~ss~dQF~iLYKgN 117 (138)
T PF00894_consen 46 VKVEFISEASSTTSG-SI-AYELDPHCKQSTLGSYINKFSITKNGSKSFPAKQINGKEWHDSSEDQFRILYKGN 117 (138)
T ss_pred EEEEEEeecccCCCc-cE-EEEecCccchhhhhheeeeEeeecccccccchhccCCccccccCcceEEEEEecC
Confidence 55666552 34 44 6999999999998777642 3443211 1245578899999994
No 148
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=33.66 E-value=1.1e+02 Score=18.51 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=34.3
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++|+. +++++..||.+|=+.+ +++ ...+-+.++|.++.-++- +.+ +++|+
T Consensus 5 vNG~~---~~~~~~~tl~~ll~~l---------~~~--~~~vav~~N~~iv~r~~~-~~~-L~~gD 54 (65)
T PRK05863 5 VNEEQ---VEVDEQTTVAALLDSL---------GFP--EKGIAVAVDWSVLPRSDW-ATK-LRDGA 54 (65)
T ss_pred ECCEE---EEcCCCCcHHHHHHHc---------CCC--CCcEEEEECCcCcChhHh-hhh-cCCCC
Confidence 36754 5777888988886665 233 578889999998854432 334 78888
No 149
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=32.51 E-value=1.3e+02 Score=23.71 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=32.7
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhcc
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~ 40 (118)
+++.|+|.|+-.+|.-+ ++.+|-..-|.-+|..|..+
T Consensus 24 ~~d~itlef~~~DGtli-t~~~Df~~~v~i~kalilge 60 (240)
T PF14941_consen 24 EEDTITLEFQRSDGTLI-TQLADFKQEVQIFKALILGE 60 (240)
T ss_pred CCceEEEEEEcCCCcEE-eeehhhhhHHHHHHHHHcCh
Confidence 57899999999999877 88889999999999999744
No 150
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=32.24 E-value=1.1e+02 Score=19.31 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=19.5
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCc
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTS 28 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~ 28 (118)
+.-.++..+..+|+.+ ++.+||.+
T Consensus 53 ~g~yev~~~~~dG~~~-ev~vD~~t 76 (83)
T PF13670_consen 53 DGCYEVEARDKDGKKV-EVYVDPAT 76 (83)
T ss_pred CCEEEEEEEECCCCEE-EEEEcCCC
Confidence 3457788888999998 99999875
No 151
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=32.11 E-value=53 Score=26.55 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=35.6
Q ss_pred EEeCCCchHHHHHHHhhccC---CCCcc-----cCCCCCCceeEEEcCeecCCCCccccCC
Q 033470 22 FRYSPTSTVAMLKERIFSDW---PKDKK-----IVPKTANDIKLISAGKILENNKTVGQCK 74 (118)
Q Consensus 22 ~~v~~~~TV~~lK~~I~~~w---p~~~~-----~ip~~~~~qrLIy~Gk~L~D~~tL~~~~ 74 (118)
|....-..|.-|+..|+++. |.... ..+...+.+-|.|+|++|+.+.||+..+
T Consensus 252 L~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr 312 (331)
T PF11816_consen 252 LNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVR 312 (331)
T ss_pred ecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHH
Confidence 34444456777777777766 22221 1112268899999999999999998775
No 152
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=31.83 E-value=1.5e+02 Score=20.95 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=35.0
Q ss_pred ceEEEEEEecCCCee---eeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCe
Q 033470 5 ELVELKFRLYDGSDI---GPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGK 62 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~---~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk 62 (118)
..|.|+||...+.-+ ..+.+++++|++-+-..|.... .++ ++++-++|=..
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~L-----kl~--as~slflYVN~ 82 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFL-----KLQ--ASDSLFLYVNN 82 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHh-----CCc--ccCeEEEEEcC
Confidence 468888888776432 3589999999999887776432 344 56666666544
No 153
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=31.25 E-value=1.3e+02 Score=19.68 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=22.9
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
..+|+|+..+|+.. .+.++++.|+.+.=.+
T Consensus 2 ~~~v~~~~~~~~~~-~~~~~~g~tLLda~~~ 31 (97)
T TIGR02008 2 TYKVTLVNPDGGEE-TIECPDDQYILDAAEE 31 (97)
T ss_pred eEEEEEEECCCCEE-EEEECCCCcHHHHHHH
Confidence 34677777788775 8999999999877433
No 154
>PF07491 PPI_Ypi1: Protein phosphatase inhibitor ; InterPro: IPR011107 These proteins include Ypi1, a novel Saccharomyces cerevisiae type 1 protein phosphatase inhibitor [] and ppp1r11/hcgv (O60927 from SWISSPROT), annotated as having protein phosphatase inhibitor activity [].
Probab=29.66 E-value=58 Score=20.38 Aligned_cols=10 Identities=40% Similarity=0.869 Sum_probs=6.8
Q ss_pred CCCCccEEee
Q 033470 108 QKKNFCSCSI 117 (118)
Q Consensus 108 ~~~~~c~C~i 117 (118)
.+++.|||+.
T Consensus 33 kkkSK~CCIy 42 (60)
T PF07491_consen 33 KKKSKCCCIY 42 (60)
T ss_pred cccCceeeee
Confidence 4567887874
No 155
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=28.58 E-value=1.9e+02 Score=19.47 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=38.3
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEeCCCCcccc
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVVQPPLTKAK 99 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~~~~~~~ 99 (118)
...+|=...+..||..+.... ++. -+.=.+-.+...|++.++|-+-+++-.. .|.+.+-++...+.++
T Consensus 6 ~q~mDI~epl~~Lk~lLe~Rl-----~~~--L~~~~f~LQD~~L~~~k~L~dQcVqgeG----lVQlnvQi~s~~~~~r 73 (88)
T PF11620_consen 6 MQHMDIREPLSTLKKLLERRL-----GIS--LSDYEFWLQDIQLEPHKSLVDQCVQGEG----LVQLNVQIKSNQGEPR 73 (88)
T ss_dssp EEEEESSSBGGGHHHHSHHHH------S----SS-EEEETTEE--TTSBTTTSS----S----EEEEEEEEE--TT--E
T ss_pred EEEEecCCcHHHHHHHHHHhh-----CCC--cCCCeEEeccceecCCccHHHhhccccC----EEEEEEEEEecCCCcc
Confidence 456777888999999887543 222 3444455577779999999999998544 5666666666655554
No 156
>PF12039 DUF3525: Protein of unknown function (DUF3525); InterPro: IPR021912 This family of proteins is functionally uncharacterised. This protein is found in viruses. Proteins in this family are about 360 amino acids in length.
Probab=26.59 E-value=74 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=21.7
Q ss_pred CceeEEEcCeecCCC-CccccC--------CCCCCCCCCCceEEEEEe
Q 033470 53 NDIKLISAGKILENN-KTVGQC--------KVPFGELPKGTITMHVVV 91 (118)
Q Consensus 53 ~~qrLIy~Gk~L~D~-~tL~~~--------~i~~g~~~~~~~t~hlv~ 91 (118)
..-.+||-||+.+.+ .++.+. -+..|. |+|||.
T Consensus 25 tnsmivyeg~fv~~~~tsvg~~fkltks~rp~~~g~------~~hlvp 66 (453)
T PF12039_consen 25 TNSMIVYEGRFVNQDATSVGDPFKLTKSRRPLKAGH------TVHLVP 66 (453)
T ss_pred CCceEEEeeeecCCCccccCChhhcccccccCCCCc------eEEech
Confidence 345689999998654 444322 356666 999873
No 157
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=26.20 E-value=1.3e+02 Score=19.96 Aligned_cols=32 Identities=9% Similarity=0.256 Sum_probs=24.5
Q ss_pred EEEEec-CCCeeeeEEeCCCchHHHHHHHhhccC
Q 033470 9 LKFRLY-DGSDIGPFRYSPTSTVAMLKERIFSDW 41 (118)
Q Consensus 9 l~~k~~-~G~~~~~~~v~~~~TV~~lK~~I~~~w 41 (118)
|+||.. .|..+ -+.++++.+-.+|.++|.+..
T Consensus 3 ikVKv~~~~Dv~-~i~v~~~i~f~dL~~kIrdkf 35 (86)
T cd06408 3 IRVKVHAQDDTR-YIMIGPDTGFADFEDKIRDKF 35 (86)
T ss_pred EEEEEEecCcEE-EEEcCCCCCHHHHHHHHHHHh
Confidence 344444 45554 899999999999999998765
No 158
>KOG4102 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.13 E-value=51 Score=23.41 Aligned_cols=10 Identities=40% Similarity=0.869 Sum_probs=6.9
Q ss_pred CCCCccEEee
Q 033470 108 QKKNFCSCSI 117 (118)
Q Consensus 108 ~~~~~c~C~i 117 (118)
.+++.|||+.
T Consensus 59 rkKSKcCCIy 68 (121)
T KOG4102|consen 59 RKKSKCCCIY 68 (121)
T ss_pred ccccceeEEE
Confidence 4467898874
No 159
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=25.96 E-value=1.2e+02 Score=18.79 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=20.1
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHh
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERI 37 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I 37 (118)
+-+.|.++++..++.---.|.++...+..-|++.+
T Consensus 23 ~LG~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~ 57 (85)
T PF02120_consen 23 ELGSVEVKLRLQGGNLSVQFTAENPETKELLRQNL 57 (85)
T ss_dssp GG--EEEEEEEETTEEEEEEE--SSHHHHHHHHTH
T ss_pred ccCcEEEEEEEeCCEEEEEEEECCHHHHHHHHHHH
Confidence 35889999998877421255666666666666555
No 160
>PF14191 YodL: YodL-like
Probab=25.40 E-value=1.5e+02 Score=20.20 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=18.9
Q ss_pred EeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc
Q 033470 23 RYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA 60 (118)
Q Consensus 23 ~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~ 60 (118)
++..+.+.++|-.+....-|.+..+-+.+++++-.|+.
T Consensus 45 ~l~~~~~Le~iy~~FN~~~P~df~GhsLSvSDVV~l~~ 82 (103)
T PF14191_consen 45 ELDHTETLEDIYERFNVDHPEDFKGHSLSVSDVVELYD 82 (103)
T ss_pred ecCCCCCHHHHHHHhCcCCCCCCCCCccChheEEEEEc
Confidence 33455555666555554445444444444444444443
No 161
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=25.34 E-value=32 Score=22.74 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=9.9
Q ss_pred CcCCCCccEEeeC
Q 033470 106 EPQKKNFCSCSIL 118 (118)
Q Consensus 106 ~~~~~~~c~C~i~ 118 (118)
.++.+.+|+|++.
T Consensus 93 ~pp~h~~CRC~~~ 105 (108)
T TIGR01641 93 APPLHPNCRCTLA 105 (108)
T ss_pred CCCCCCCcCCeee
Confidence 4467789999974
No 162
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.66 E-value=2.4e+02 Score=19.35 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=9.8
Q ss_pred CCchHHHHHHHhhcc
Q 033470 26 PTSTVAMLKERIFSD 40 (118)
Q Consensus 26 ~~~TV~~lK~~I~~~ 40 (118)
...||.+|-..|+.+
T Consensus 34 ~~~tvgdll~yi~~~ 48 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGK 48 (101)
T ss_pred CcccHHHHHHHHHHH
Confidence 345788877766643
No 163
>PRK07440 hypothetical protein; Provisional
Probab=23.91 E-value=1.9e+02 Score=17.94 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=35.7
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.|+|++ +|+ +++++...||.+|=+.+. ++ +..+-+-++|.++.-+. -++.-+.+|+
T Consensus 4 ~m~i~v---NG~---~~~~~~~~tl~~lL~~l~---------~~--~~~vav~~N~~iv~r~~-w~~~~L~~gD 59 (70)
T PRK07440 4 PITLQV---NGE---TRTCSSGTSLPDLLQQLG---------FN--PRLVAVEYNGEILHRQF-WEQTQVQPGD 59 (70)
T ss_pred ceEEEE---CCE---EEEcCCCCCHHHHHHHcC---------CC--CCeEEEEECCEEeCHHH-cCceecCCCC
Confidence 345544 675 457788899998876652 22 56777888898886221 2334566676
No 164
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=23.76 E-value=1.5e+02 Score=22.88 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=41.6
Q ss_pred CceEEEEEEecCC--Cee---eeEEeCCCchHHHHHHHhhc--cCCCCcccCCCCCCceeE---EEcCe--ecCCCCccc
Q 033470 4 EELVELKFRLYDG--SDI---GPFRYSPTSTVAMLKERIFS--DWPKDKKIVPKTANDIKL---ISAGK--ILENNKTVG 71 (118)
Q Consensus 4 ~~~i~l~~k~~~G--~~~---~~~~v~~~~TV~~lK~~I~~--~wp~~~~~ip~~~~~qrL---Iy~Gk--~L~D~~tL~ 71 (118)
..+|-||||.-+- +++ +.+-|+.+++|++|=..|.+ .||.+-+ +.| |-.|+ .++...|++
T Consensus 66 ~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~--------l~lyEEi~~~~ie~i~~~~t~~ 137 (249)
T PF12436_consen 66 SDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTP--------LLLYEEIKPNMIEPIDPNQTFE 137 (249)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT----------EEEEEEEETTEEEE--SSSBHH
T ss_pred CCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCc--------eEEEEEeccceeeEcCCCCchh
Confidence 4689999998643 232 46788999999988888875 3664422 222 23344 368899999
Q ss_pred cCCCCCCC
Q 033470 72 QCKVPFGE 79 (118)
Q Consensus 72 ~~~i~~g~ 79 (118)
.+.+..|+
T Consensus 138 ~~el~~Gd 145 (249)
T PF12436_consen 138 KAELQDGD 145 (249)
T ss_dssp HTT--TTE
T ss_pred hcccCCCC
Confidence 99999998
No 165
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=23.65 E-value=1.1e+02 Score=20.99 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=25.3
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCC
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWP 42 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp 42 (118)
.++|..-+|++. .+.|....+-.+++.++..+++
T Consensus 2 vi~~I~~dG~tk-~VNV~~c~~a~eI~~rvLKKfg 35 (105)
T PF14847_consen 2 VIRFILEDGSTK-TVNVSGCFNAQEIKRRVLKKFG 35 (105)
T ss_dssp EEEEEETTTEEE-EEE--S--HHHHHHHHHHHHHT
T ss_pred EEEEECCCCcEE-EEEECCCCCHHHHHHHHHHHcC
Confidence 368888899885 9999999999999999987753
No 166
>COG4925 Uncharacterized conserved protein [Function unknown]
Probab=22.67 E-value=1.9e+02 Score=21.32 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=29.2
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHh
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERI 37 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I 37 (118)
.+++++++..++|+.. ..+...+.|..++-+.+
T Consensus 48 ~~tmk~rl~~v~g~~~-tatLnD~atAkdfa~lL 80 (166)
T COG4925 48 GETMKRRLIQVNGETT-TATLNDGATAKDFAELL 80 (166)
T ss_pred CCceEEEEEeeCCEEE-EEEecCChhHHHHHHhC
Confidence 4889999999999987 88999999999998776
No 167
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=21.45 E-value=1.3e+02 Score=20.70 Aligned_cols=29 Identities=14% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHh
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERI 37 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I 37 (118)
|+|+|.. +|+.+ ..++..+.|+.+|.+++
T Consensus 1 mkI~i~i-~~~~~-~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEI-EAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEE-EEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEE-EEEECCCHHHHHHHHhC
Confidence 4566655 47787 88888888888887776
No 168
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=21.33 E-value=1.8e+02 Score=19.13 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=20.2
Q ss_pred CCCeeeeEEeCC--CchHHHHHHHhhcc
Q 033470 15 DGSDIGPFRYSP--TSTVAMLKERIFSD 40 (118)
Q Consensus 15 ~G~~~~~~~v~~--~~TV~~lK~~I~~~ 40 (118)
.|..+ -|.+++ +.+-.+|++.|+..
T Consensus 8 ~~d~~-rf~~~~~~~~~~~~L~~ev~~r 34 (81)
T cd06396 8 NGESQ-SFLVSDSENTTWASVEAMVKVS 34 (81)
T ss_pred CCeEE-EEEecCCCCCCHHHHHHHHHHH
Confidence 55565 889999 77999999999854
No 169
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=21.29 E-value=65 Score=19.38 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=21.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhh
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIF 38 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~ 38 (118)
+.|++...+|..| .++.+...--..||..+.
T Consensus 1 ~~v~L~SsDg~~f-~V~~~~a~~S~~i~~ml~ 31 (62)
T PF03931_consen 1 MYVKLVSSDGQEF-EVSREAAKQSKTIKNMLE 31 (62)
T ss_dssp -EEEEEETTSEEE-EEEHHHHTTSHHHHHHHH
T ss_pred CEEEEEcCCCCEE-EeeHHHHHHhHHHHHHHh
Confidence 4688999999887 777655555556677675
No 170
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=21.20 E-value=2.1e+02 Score=17.48 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=33.0
Q ss_pred cCCCeeeeEEeCCC-chHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 14 YDGSDIGPFRYSPT-STVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 14 ~~G~~~~~~~v~~~-~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++|+. ++++.. .||.+|=+.+. ++ +..+-+-++|.++.-++ -++..+++|+
T Consensus 5 vNG~~---~~~~~~~~tv~~lL~~l~---------~~--~~~vav~vN~~iv~r~~-w~~~~L~~gD 56 (67)
T PRK07696 5 INGNQ---IEVPESVKTVAELLTHLE---------LD--NKIVVVERNKDILQKDD-HTDTSVFDGD 56 (67)
T ss_pred ECCEE---EEcCCCcccHHHHHHHcC---------CC--CCeEEEEECCEEeCHHH-cCceecCCCC
Confidence 37765 466665 68888876652 22 46777888999885432 3445577777
No 171
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=20.19 E-value=2.6e+02 Score=24.33 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=45.7
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecC--C-CCccccCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILE--N-NKTVGQCKVPFGE 79 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~--D-~~tL~~~~i~~g~ 79 (118)
...+|-||+.+|.++ .=+|+.+.-...+|.-++.+---+.. .=.+---|=-|... | .+||.++++....
T Consensus 313 d~~rLqiRLPdGssf-te~Fps~~vL~~vr~yvrq~~~i~~g-----~f~LatpyPRReft~eDy~KtllEl~L~psa 384 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSF-TEKFPSTSVLRMVRDYVRQNQTIGLG-----AFDLATPYPRREFTDEDYDKTLLELRLFPSA 384 (506)
T ss_pred ceeEEEEecCCccch-hhcCCcchHHHHHHHHHHhccccccc-----ceeeccccccccccchhhhhhHHHhccCCcc
Confidence 578999999999998 77888888888999888744211111 11122234455442 2 6789898887553
No 172
>PRK04966 hypothetical protein; Provisional
Probab=20.16 E-value=45 Score=21.57 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=21.6
Q ss_pred ecCCCeeeeEEeCCCchHHHHHHHhh
Q 033470 13 LYDGSDIGPFRYSPTSTVAMLKERIF 38 (118)
Q Consensus 13 ~~~G~~~~~~~v~~~~TV~~lK~~I~ 38 (118)
+..|.+++..+.+-...|+++|.++.
T Consensus 22 ~ReGTdyG~~E~sl~~kv~qv~~qL~ 47 (72)
T PRK04966 22 LREGTDYGEHERSLEQKVADVKRQLQ 47 (72)
T ss_pred hccCccCCcccccHHHHHHHHHHHHH
Confidence 34788777778888899999999996
Done!