Query 033470
Match_columns 118
No_of_seqs 111 out of 670
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 6.7E-38 2.3E-42 221.8 12.7 113 4-118 14-126 (126)
2 2gow_A HCG-1 protein, ubiquiti 100.0 5.5E-33 1.9E-37 196.2 12.0 110 3-118 14-125 (125)
3 1wgh_A Ubiquitin-like 3, HCG-1 100.0 2.7E-28 9.1E-33 170.3 12.8 98 4-106 14-112 (116)
4 3phx_B Ubiquitin-like protein 99.9 2.4E-21 8.2E-26 124.1 9.0 77 5-95 3-79 (79)
5 1wgd_A Homocysteine-responsive 99.9 1.8E-21 6.1E-26 128.9 8.4 84 3-98 4-91 (93)
6 4fbj_B NEDD8; effector-HOST ta 99.8 3.1E-21 1.1E-25 126.9 8.3 81 7-101 1-81 (88)
7 4dwf_A HLA-B-associated transc 99.8 5E-21 1.7E-25 125.4 9.1 81 3-98 2-82 (90)
8 3plu_A Ubiquitin-like modifier 99.8 4E-21 1.4E-25 129.5 8.2 74 3-90 18-91 (93)
9 2lxa_A Ubiquitin-like protein 99.8 3.8E-21 1.3E-25 127.6 7.5 76 7-95 2-80 (87)
10 3dbh_I NEDD8; cell cycle, acti 99.8 1E-20 3.5E-25 122.8 8.7 79 4-96 10-88 (88)
11 2uyz_B Small ubiquitin-related 99.8 5E-21 1.7E-25 122.6 7.0 79 4-96 1-79 (79)
12 4eew_A Large proline-rich prot 99.8 9.6E-21 3.3E-25 123.6 8.3 75 3-92 14-88 (88)
13 1uh6_A Ubiquitin-like 5; beta- 99.8 5.9E-21 2E-25 130.1 6.7 75 3-91 25-99 (100)
14 4a20_A Ubiquitin-like protein 99.8 2.7E-20 9.3E-25 126.0 9.9 78 4-94 17-97 (98)
15 2wyq_A HHR23A, UV excision rep 99.8 3.2E-20 1.1E-24 119.9 9.4 80 5-95 4-83 (85)
16 1wy8_A NP95-like ring finger p 99.8 4.1E-20 1.4E-24 120.7 9.7 82 3-98 4-87 (89)
17 4hcn_B Polyubiquitin, ubiquiti 99.8 1.6E-20 5.6E-25 125.6 7.9 80 3-96 19-98 (98)
18 3v6c_B Ubiquitin; structural g 99.8 3.4E-20 1.1E-24 122.2 9.0 76 4-93 15-90 (91)
19 2kk8_A Uncharacterized protein 99.8 1.8E-20 6E-25 122.9 7.6 75 5-93 9-84 (84)
20 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 3E-20 1E-24 120.7 8.6 81 3-97 4-84 (87)
21 2kdb_A Homocysteine-responsive 99.8 1.3E-20 4.3E-25 127.8 6.9 75 4-90 21-99 (99)
22 2faz_A Ubiquitin-like containi 99.8 5.7E-20 2E-24 117.2 9.4 76 5-93 1-77 (78)
23 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 4.4E-20 1.5E-24 122.0 8.9 80 7-100 2-81 (96)
24 1ndd_A NEDD8, protein (ubiquit 99.8 4.8E-20 1.6E-24 115.9 8.5 76 7-96 1-76 (76)
25 2kan_A Uncharacterized protein 99.8 3.9E-20 1.3E-24 123.6 8.4 80 4-98 13-93 (94)
26 2hj8_A Interferon-induced 17 k 99.8 2.4E-20 8.4E-25 122.4 7.2 80 5-98 3-82 (88)
27 3n3k_B Ubiquitin; hydrolase, p 99.8 3.9E-20 1.3E-24 119.1 7.8 79 5-97 2-80 (85)
28 3mtn_B UBA80, ubcep1, ubiquiti 99.8 7E-20 2.4E-24 117.8 8.8 79 5-97 2-80 (85)
29 1wyw_B Ubiquitin-like protein 99.8 3.3E-20 1.1E-24 124.2 7.5 78 5-96 20-97 (97)
30 1uel_A HHR23B, UV excision rep 99.8 1.4E-19 4.9E-24 120.4 9.6 81 7-98 1-81 (95)
31 3a9j_A Ubiquitin; protein comp 99.8 1.3E-19 4.5E-24 113.9 8.9 76 7-96 1-76 (76)
32 2dzi_A Ubiquitin-like protein 99.8 1.1E-19 3.8E-24 116.0 8.6 77 3-93 4-80 (81)
33 3m62_B UV excision repair prot 99.8 6.3E-20 2.1E-24 124.8 7.7 78 7-98 2-79 (106)
34 1wia_A Hypothetical ubiquitin- 99.8 2.2E-19 7.7E-24 119.0 9.7 80 2-98 3-83 (95)
35 1sif_A Ubiquitin; hydrophobic 99.8 1E-19 3.4E-24 119.6 7.9 78 6-97 9-86 (88)
36 1wju_A NEDD8 ultimate buster-1 99.8 7.8E-20 2.7E-24 124.5 7.4 79 7-100 16-98 (100)
37 3vdz_A Ubiquitin-40S ribosomal 99.8 1.9E-19 6.7E-24 123.3 9.0 78 5-96 34-111 (111)
38 2bwf_A Ubiquitin-like protein 99.8 3.6E-19 1.2E-23 112.7 8.6 73 6-93 4-76 (77)
39 3u5c_f 40S ribosomal protein S 99.8 8.9E-21 3E-25 137.3 1.1 84 7-104 1-84 (152)
40 1wx8_A Riken cDNA 4931431F19; 99.8 1.3E-19 4.5E-24 120.2 6.5 79 4-97 15-93 (96)
41 1yqb_A Ubiquilin 3; structural 99.8 2.7E-19 9.1E-24 120.7 8.1 79 4-97 20-98 (100)
42 1ttn_A DC-UBP, dendritic cell- 99.8 5.2E-19 1.8E-23 120.0 9.0 78 5-96 22-99 (106)
43 2daf_A FLJ35834 protein; hypot 99.8 2.5E-19 8.7E-24 125.1 7.5 80 4-97 13-93 (118)
44 1yx5_B Ubiquitin; proteasome, 99.8 6.3E-19 2.1E-23 117.5 9.1 79 7-99 1-79 (98)
45 1wx7_A Ubiquilin 3; ubiquitin- 99.8 6.4E-19 2.2E-23 119.3 9.2 80 4-98 15-94 (106)
46 2klc_A Ubiquilin-1; ubiquitin- 99.8 6.5E-19 2.2E-23 118.9 9.0 78 3-95 22-99 (101)
47 1v2y_A 3300001G02RIK protein; 99.8 1.2E-19 4.2E-24 124.4 5.5 82 3-96 4-99 (105)
48 3rt3_B Ubiquitin-like protein 99.8 5.8E-19 2E-23 126.1 9.2 79 5-97 80-158 (159)
49 1j8c_A Ubiquitin-like protein 99.8 7E-19 2.4E-23 123.3 9.0 80 4-98 30-109 (125)
50 2l7r_A Ubiquitin-like protein 99.8 3.3E-19 1.1E-23 118.5 7.0 76 5-96 18-93 (93)
51 1we6_A Splicing factor, putati 99.8 5.9E-19 2E-23 120.5 8.3 80 5-98 26-109 (111)
52 3l0w_B Monoubiquitinated proli 99.8 8.3E-19 2.8E-23 128.4 9.4 79 7-99 1-79 (169)
53 4ajy_B Transcription elongatio 99.8 4E-19 1.4E-23 124.2 7.2 80 7-94 1-82 (118)
54 2fnj_B Transcription elongatio 99.8 3.2E-19 1.1E-23 124.7 6.1 80 8-96 2-83 (118)
55 3b1l_X E3 ubiquitin-protein li 99.6 2.4E-20 8.2E-25 118.2 0.0 75 7-95 1-75 (76)
56 1we7_A SF3A1 protein; structur 99.8 1.2E-18 4.1E-23 119.8 8.5 81 5-99 24-114 (115)
57 2kdi_A Ubiquitin, vacuolar pro 99.8 1.8E-18 6.1E-23 119.2 9.2 80 5-98 8-87 (114)
58 2ojr_A Ubiquitin; lanthide-bin 99.8 2.6E-18 8.8E-23 117.4 9.7 78 5-96 34-111 (111)
59 1x1m_A Ubiquitin-like protein 99.7 2.7E-18 9.3E-23 116.8 7.8 81 4-96 10-103 (107)
60 3q3f_A Ribonuclease/ubiquitin 99.7 2.6E-18 9E-23 128.3 8.3 80 5-98 104-183 (189)
61 1v5o_A 1700011N24RIK protein; 99.7 4.2E-18 1.4E-22 114.8 7.8 81 4-98 5-90 (102)
62 3m63_B Ubiquitin domain-contai 99.7 1.4E-18 4.8E-23 117.4 5.2 75 4-93 26-100 (101)
63 3u30_A Ubiquitin, linear DI-ub 99.7 8.3E-18 2.8E-22 121.9 9.2 80 4-97 18-97 (172)
64 3u5e_m 60S ribosomal protein L 99.7 2E-19 6.8E-24 125.9 0.0 78 7-98 1-78 (128)
65 4dbg_A Ranbp-type and C3HC4-ty 99.7 2.1E-17 7.3E-22 113.4 8.9 77 4-94 22-101 (105)
66 3u30_A Ubiquitin, linear DI-ub 99.7 1.3E-17 4.5E-22 120.8 8.0 78 5-96 95-172 (172)
67 3b08_A Polyubiquitin-C, ubiqui 99.7 3.6E-17 1.2E-21 114.7 9.5 78 5-96 75-152 (152)
68 1wgg_A Ubiquitin carboxyl-term 99.7 2.5E-17 8.5E-22 110.3 8.0 76 3-94 4-80 (96)
69 3rt3_B Ubiquitin-like protein 99.7 3E-17 1E-21 117.1 8.7 74 6-93 2-77 (159)
70 1wxv_A BAG-family molecular ch 99.7 3.7E-17 1.3E-21 107.7 8.1 78 4-96 5-88 (92)
71 2xzm_9 RPS31E; ribosome, trans 99.7 1.8E-18 6.2E-23 129.3 1.4 74 7-99 1-74 (189)
72 2kd0_A LRR repeats and ubiquit 99.7 4.9E-17 1.7E-21 106.4 7.6 71 9-93 14-84 (85)
73 1v5t_A 8430435I17RIK protein; 99.7 2.5E-17 8.7E-22 108.7 6.2 76 3-93 4-83 (90)
74 3b08_A Polyubiquitin-C, ubiqui 99.7 9.1E-17 3.1E-21 112.6 8.9 76 7-96 1-76 (152)
75 1oqy_A HHR23A, UV excision rep 99.7 4.4E-17 1.5E-21 132.1 7.9 84 4-97 5-88 (368)
76 1v86_A DNA segment, CHR 7, way 99.7 5.7E-17 1.9E-21 108.2 5.3 74 4-93 15-88 (95)
77 2dzj_A Synaptic glycoprotein S 99.7 1.9E-16 6.4E-21 104.8 6.9 72 6-89 10-85 (88)
78 4b6w_A Tubulin-specific chaper 99.6 4.8E-16 1.6E-20 102.6 8.2 74 6-93 2-84 (86)
79 2kjr_A CG11242; UBL, ubiquitin 99.6 4E-16 1.4E-20 104.8 8.0 74 3-90 12-93 (95)
80 3ai5_A Yeast enhanced green fl 99.6 7.8E-16 2.7E-20 122.3 8.7 76 4-93 231-306 (307)
81 2kj6_A Tubulin folding cofacto 99.6 8.2E-16 2.8E-20 103.7 7.3 75 3-91 11-94 (97)
82 2dzm_A FAS-associated factor 1 99.6 7.8E-16 2.7E-20 104.5 5.9 76 6-96 8-85 (100)
83 1v6e_A Cytoskeleton-associated 99.6 4.6E-15 1.6E-19 98.6 8.2 74 4-91 5-86 (95)
84 2io1_B Small ubiquitin-related 99.6 1.1E-14 3.9E-19 97.5 7.6 81 3-97 4-84 (94)
85 1wf9_A NPL4 family protein; be 99.5 9E-15 3.1E-19 99.4 6.2 75 4-93 5-95 (107)
86 3shq_A UBLCP1; phosphatase, hy 99.5 2.6E-14 8.7E-19 113.8 6.1 76 3-93 2-80 (320)
87 1t0y_A Tubulin folding cofacto 99.5 1.4E-13 4.9E-18 95.5 9.1 74 5-92 5-86 (122)
88 2io0_B Small ubiquitin-related 99.5 1.5E-13 5.1E-18 91.6 8.5 80 4-97 3-82 (91)
89 2d07_B Ubiquitin-like protein 99.4 3.2E-13 1.1E-17 90.1 8.2 79 4-96 15-93 (93)
90 2kzr_A Ubiquitin thioesterase 99.4 1.2E-13 3.9E-18 90.2 5.6 71 7-92 1-77 (86)
91 1wz0_A Ubiquitin-like protein 99.4 4.1E-13 1.4E-17 91.5 7.8 80 4-97 22-101 (104)
92 1wm3_A Ubiquitin-like protein 99.4 8.6E-13 3E-17 83.8 7.5 70 7-90 2-71 (72)
93 3a4r_A Nfatc2-interacting prot 99.4 1.9E-12 6.6E-17 83.7 8.0 74 3-90 4-78 (79)
94 2k8h_A Small ubiquitin protein 99.4 7.4E-13 2.5E-17 91.2 6.3 79 4-96 24-102 (110)
95 2eke_C Ubiquitin-like protein 99.4 2.4E-12 8.1E-17 88.2 8.0 77 4-95 29-105 (106)
96 1wjn_A Tubulin-folding protein 99.1 4.4E-10 1.5E-14 74.5 10.1 75 4-92 7-92 (97)
97 3kyd_D Small ubiquitin-related 99.0 1.7E-09 5.9E-14 75.0 8.8 76 4-93 38-113 (115)
98 3pge_A SUMO-modified prolifera 98.9 4.6E-09 1.6E-13 78.9 8.6 81 4-99 27-107 (200)
99 3tix_A Ubiquitin-like protein 98.8 1.7E-08 5.8E-13 75.9 7.0 81 4-99 55-135 (207)
100 3v7o_A Minor nucleoprotein VP3 98.5 1.4E-08 4.7E-13 77.3 0.1 80 4-98 19-98 (227)
101 4efo_A Serine/threonine-protei 98.3 2.3E-06 7.9E-11 57.3 7.6 44 14-65 21-64 (94)
102 2pjh_A Protein NPL4, nuclear p 98.3 4.2E-07 1.4E-11 58.7 3.0 71 5-90 3-78 (80)
103 3goe_A DNA repair protein RAD6 98.2 9.4E-06 3.2E-10 52.8 8.5 73 5-91 8-81 (82)
104 3ix6_A TS, tsase, thymidylate 98.2 1.6E-07 5.3E-12 76.0 -0.2 81 4-99 19-99 (360)
105 3uf8_A Ubiquitin-like protein 98.2 5.1E-06 1.7E-10 62.1 7.6 79 4-97 19-97 (209)
106 2jxx_A Nfatc2-interacting prot 98.1 1.1E-05 3.8E-10 54.1 7.8 69 3-79 22-91 (97)
107 4da1_A Protein phosphatase 1K, 97.8 2.3E-06 7.8E-11 68.6 0.0 80 4-98 28-107 (389)
108 3qx1_A FAS-associated factor 1 97.8 0.00013 4.6E-09 46.7 8.0 72 4-90 5-81 (84)
109 2bps_A YUKD protein; ubiquitin 97.5 0.00031 1.1E-08 45.6 6.6 71 6-79 4-76 (81)
110 2l76_A Nfatc2-interacting prot 97.5 0.00056 1.9E-08 45.7 7.5 73 4-91 19-91 (95)
111 3ivf_A Talin-1; FERM domain, c 97.4 0.0014 4.9E-08 51.8 10.3 71 4-79 1-77 (371)
112 4e71_A Plexin-B2, MM1; transme 97.3 0.0017 5.9E-08 44.4 8.2 80 5-92 10-110 (111)
113 1wj4_A KIAA0794 protein; UBX d 97.2 0.0011 3.7E-08 45.8 7.0 72 4-90 41-117 (124)
114 1s3s_G P47 protein; AAA ATPase 97.2 0.0013 4.5E-08 45.5 7.2 68 4-78 50-120 (127)
115 2dzk_A UBX domain-containing p 97.2 0.0017 5.7E-08 43.8 7.1 75 4-92 11-90 (109)
116 2kc2_A Talin-1, F1; FERM, adhe 97.1 0.00063 2.1E-08 47.7 5.0 66 8-79 13-115 (128)
117 2cr5_A Reproduction 8; UBX dom 97.1 0.0032 1.1E-07 42.3 7.8 72 4-90 21-96 (109)
118 2r2o_A Plexin-B1; effector dom 96.7 0.0097 3.3E-07 42.1 7.9 82 5-94 23-130 (138)
119 3h6n_A Plexin-D1; structural g 96.6 0.013 4.4E-07 41.0 8.1 80 6-93 4-105 (127)
120 4e74_A Plexin-A4; RBD, structu 96.2 0.017 5.8E-07 39.8 6.8 81 5-93 12-115 (117)
121 2al3_A TUG long isoform; TUG U 95.0 0.094 3.2E-06 34.5 6.7 75 5-93 8-82 (90)
122 3kuz_A Plexin-C1; structural g 95.0 0.18 6.1E-06 35.1 8.3 76 5-90 18-124 (126)
123 3hm6_X Plexin-B1; structural g 93.8 0.42 1.4E-05 41.2 9.6 81 5-93 256-362 (644)
124 2l32_A Small archaeal modifier 93.6 0.3 1E-05 30.5 6.4 50 7-68 1-50 (74)
125 3ig3_A Plxna3 protein; plexin 93.1 0.8 2.7E-05 39.3 10.3 81 5-93 232-335 (627)
126 1wgk_A Riken cDNA 2900073H19 p 91.5 2.1 7.1E-05 28.7 9.0 81 5-96 10-108 (114)
127 1vjk_A Molybdopterin convertin 91.1 2 6.7E-05 27.5 8.9 73 5-90 8-92 (98)
128 1ryj_A Unknown; beta/alpha pro 87.3 3.3 0.00011 24.9 9.1 61 6-90 4-64 (70)
129 4a3p_A Ubiquitin carboxyl-term 87.3 3.4 0.00011 30.3 8.1 52 21-79 143-201 (217)
130 3po0_A Small archaeal modifier 83.8 5.3 0.00018 24.7 6.7 63 17-92 18-85 (89)
131 1ef1_A Moesin; membrane, FERM 83.1 7.6 0.00026 28.9 8.5 79 6-96 1-84 (294)
132 3jyu_A Ubiquitin carboxyl-term 83.0 9.1 0.00031 28.2 8.8 52 21-79 155-213 (231)
133 1h4r_A Merlin; FERM, neurofibr 82.7 8.2 0.00028 29.1 8.7 79 5-95 21-103 (314)
134 2qjl_A URM1, ubiquitin-related 82.4 7.4 0.00025 24.8 8.8 24 21-44 23-48 (99)
135 1wgr_A Growth factor receptor- 81.9 3.2 0.00011 27.4 5.3 35 5-40 8-42 (100)
136 1oey_A P67-PHOX, neutrophil cy 81.4 4.5 0.00016 25.9 5.7 48 5-62 4-51 (83)
137 2v1y_A Phosphatidylinositol-4, 81.1 2.4 8.1E-05 28.5 4.5 35 5-40 18-52 (108)
138 1tyg_B YJBS; alpha beta barrel 80.9 6.1 0.00021 25.2 6.2 50 15-79 26-76 (87)
139 2daj_A KIAA0977 protein, COBL- 80.8 1.3 4.3E-05 29.0 2.9 69 4-77 8-76 (91)
140 3ge3_C Toluene-4-monooxygenase 79.7 9.9 0.00034 24.5 9.6 71 7-79 4-76 (84)
141 1fm0_D Molybdopterin convertin 78.5 4.2 0.00014 24.6 4.7 57 21-92 20-77 (81)
142 3rpf_C Molybdopterin convertin 77.7 9.1 0.00031 22.9 8.4 69 8-92 2-70 (74)
143 2i1j_A Moesin; FERM, coiled-co 77.5 13 0.00043 31.2 8.8 80 5-96 3-87 (575)
144 3ivf_A Talin-1; FERM domain, c 77.4 13 0.00045 28.8 8.4 75 5-92 84-167 (371)
145 2q5w_D Molybdopterin convertin 76.8 5.7 0.00019 23.7 5.0 51 21-90 19-71 (77)
146 1f0z_A THis protein; ubiquitin 75.5 6.3 0.00022 23.2 4.8 51 14-79 5-55 (66)
147 4eut_A Serine/threonine-protei 75.1 25 0.00086 26.8 9.4 47 15-68 319-366 (396)
148 3dwg_C 9.5 kDa culture filtrat 74.9 12 0.00043 23.1 8.3 71 15-94 15-91 (93)
149 2y3a_A Phosphatidylinositol-4, 73.2 25 0.00086 32.0 10.0 80 3-92 48-136 (1092)
150 3qij_A Protein 4.1; cytoskelet 69.2 5.1 0.00017 30.4 4.1 78 5-95 16-98 (296)
151 2g1e_A Hypothetical protein TA 68.1 9.4 0.00032 23.3 4.6 64 21-92 18-86 (90)
152 2kl0_A Putative thiamin biosyn 67.0 12 0.00041 22.8 4.8 57 14-92 5-61 (73)
153 2c7h_A RBBP6, retinoblastoma-b 63.6 11 0.00037 24.3 4.2 55 8-74 8-63 (86)
154 2cu3_A Unknown function protei 62.8 20 0.00068 20.8 5.6 56 14-91 4-59 (64)
155 1rws_A Hypothetical protein PF 62.8 7 0.00024 23.8 3.1 43 21-79 24-66 (77)
156 2inc_C TOUB protein; DIIRON, 4 58.3 33 0.0011 21.9 10.9 59 20-79 15-75 (83)
157 2k5p_A THis protein, thiamine- 56.7 25 0.00086 21.6 5.0 59 14-92 5-65 (78)
158 3au4_A Myosin-X; protein-prote 56.4 15 0.00051 30.1 4.9 35 5-40 215-249 (555)
159 2kmm_A Guanosine-3',5'-BIS(dip 56.3 13 0.00044 21.7 3.4 29 7-38 1-29 (73)
160 1y8x_B Ubiquitin-activating en 53.0 9.8 0.00034 24.9 2.6 62 21-90 8-82 (98)
161 2wlb_A ETP1-FD, electron trans 52.6 22 0.00075 22.3 4.3 31 5-36 2-32 (103)
162 3lxf_A Ferredoxin; iron, iron- 52.0 17 0.00058 23.3 3.7 27 8-35 2-28 (104)
163 3pvl_A Myosin VIIA isoform 1; 48.4 23 0.00078 30.1 4.9 36 5-41 262-297 (655)
164 2l52_A Methanosarcina acetivor 47.7 50 0.0017 20.8 7.5 74 7-91 4-94 (99)
165 4gmv_A RAS-associated and plec 47.7 31 0.001 26.4 5.1 34 5-39 30-63 (281)
166 1n62_A Carbon monoxide dehydro 47.0 22 0.00077 25.1 4.0 28 6-35 3-30 (166)
167 1ffv_A CUTS, iron-sulfur prote 47.0 23 0.00077 25.0 4.0 28 6-35 3-30 (163)
168 1jq4_A Methane monooxygenase c 47.0 25 0.00085 21.9 3.9 30 6-36 4-33 (98)
169 3hrd_D Nicotinate dehydrogenas 46.4 26 0.00089 24.7 4.2 26 6-33 3-28 (160)
170 3hk0_A Growth factor receptor- 46.2 35 0.0012 25.7 5.2 33 6-39 8-40 (256)
171 2kvr_A Ubiquitin carboxyl-term 44.6 17 0.00058 24.7 2.9 33 21-60 59-91 (130)
172 3qa8_A MGC80376 protein; kinas 43.7 24 0.00083 30.2 4.3 53 14-74 319-372 (676)
173 3hhm_A Phosphatidylinositol-4, 43.6 22 0.00077 32.4 4.2 34 6-40 42-75 (1091)
174 2bt6_A Adrenodoxin 1; rutheniu 43.4 28 0.00097 22.0 3.8 29 5-34 5-33 (108)
175 4dxa_B KREV interaction trappe 41.4 18 0.00061 27.5 2.9 32 5-37 4-37 (322)
176 2y5c_A Adrenodoxin-like protei 40.6 33 0.0011 21.8 3.8 27 7-34 6-32 (109)
177 2ylm_A Ubiquitin carboxyl-term 39.1 1.3E+02 0.0046 24.7 8.0 63 5-73 338-408 (530)
178 1uwm_A Ferredoxin VI, FDVI; el 37.9 37 0.0013 21.3 3.6 26 8-34 2-27 (106)
179 1xlq_A Putidaredoxin, PDX; [2F 37.1 40 0.0014 21.2 3.7 27 8-35 2-28 (106)
180 3eud_A Protein SHQ1; CS domain 36.4 26 0.0009 23.7 2.8 58 4-79 26-87 (115)
181 3hui_A Ferredoxin; cytochrome 35.4 56 0.0019 21.7 4.4 29 5-34 20-48 (126)
182 1wz3_A Autophagy 12B, ATG12B, 35.3 45 0.0015 21.5 3.7 36 5-40 12-50 (96)
183 3onh_A Ubiquitin-activating en 34.8 47 0.0016 22.8 3.9 58 21-79 9-72 (127)
184 1t3q_A Quinoline 2-oxidoreduct 34.3 49 0.0017 23.0 4.1 30 5-36 8-37 (168)
185 1frr_A Ferredoxin I; electron 33.7 53 0.0018 20.0 3.8 28 7-36 2-29 (95)
186 3tca_A Amyloid beta A4 precurs 33.1 55 0.0019 23.7 4.3 34 6-40 34-67 (291)
187 1rm6_C 4-hydroxybenzoyl-COA re 28.9 59 0.002 22.6 3.7 27 8-36 4-30 (161)
188 1v8c_A MOAD related protein; r 28.1 1.4E+02 0.0047 20.8 5.6 67 21-96 17-87 (168)
189 3hvz_A Uncharacterized protein 27.7 77 0.0026 19.4 3.7 28 8-38 7-34 (78)
190 1ip9_A BEM1 protein; ubiquitin 26.1 1.1E+02 0.0036 19.6 4.2 34 5-40 11-44 (85)
191 1b9r_A Protein (terpredoxin); 25.8 34 0.0011 21.5 1.8 26 8-34 2-27 (105)
192 1awd_A Ferredoxin; electron tr 25.7 71 0.0024 19.5 3.3 27 8-36 2-28 (94)
193 1q1o_A Cell division control p 25.7 1.3E+02 0.0043 19.6 4.6 36 5-41 4-46 (98)
194 2y3a_A Phosphatidylinositol-4, 24.2 1.8E+02 0.0063 26.4 6.8 69 5-74 217-289 (1092)
195 1wri_A Ferredoxin II, ferredox 23.6 1E+02 0.0035 18.8 3.8 34 7-43 2-35 (93)
196 2k9x_A Tburm1, uncharacterized 23.1 1.6E+02 0.0055 19.1 7.0 38 7-45 5-52 (110)
197 4eku_A Protein-tyrosine kinase 23.0 1.4E+02 0.0047 23.6 5.3 61 8-72 23-96 (392)
198 1rax_A Protein (RA-domain of R 22.4 90 0.0031 21.0 3.5 32 7-38 31-62 (115)
199 3n9z_C Adrenodoxin; cytochrome 22.3 19 0.00063 24.1 0.0 29 4-33 3-31 (123)
200 2ylm_A Ubiquitin carboxyl-term 21.8 58 0.002 26.9 2.9 33 21-60 39-71 (530)
201 1czp_A Ferredoxin I; [2Fe-2S] 21.6 1.4E+02 0.0049 18.2 4.2 29 7-36 3-32 (98)
202 1a70_A Ferredoxin; iron-sulfur 21.3 1.1E+02 0.0038 18.7 3.6 28 7-36 3-30 (97)
203 1iue_A Ferredoxin; electron tr 20.0 1.2E+02 0.0041 18.6 3.6 28 7-36 3-30 (98)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=100.00 E-value=6.7e-38 Score=221.82 Aligned_cols=113 Identities=47% Similarity=0.807 Sum_probs=91.0
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
++.|+|+||+++|+++.+++|++++||++||++|+++||+|++++|.++++|||||+||+|+|+.||++|+|+.++.|+.
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 68999999999999986799999999999999999999999999986679999999999999999999999999987888
Q ss_pred ceEEEEEeCCCCcccccccccCCcCCCCccEEeeC
Q 033470 84 TITMHVVVQPPLTKAKTEKKLDEPQKKNFCSCSIL 118 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~~~~~~~~~~~~~~~c~C~i~ 118 (118)
++|||||+++.+++++ ++.++++++++|+|+||
T Consensus 94 v~tmhlVlrl~g~~kk--kk~~~~pkk~~C~C~Il 126 (126)
T 1se9_A 94 VTTMHVIIQAPVTEKE--KKPKGDPKMNKCVCSVM 126 (126)
T ss_dssp CEEEEEEECCCSSCCC--C----------------
T ss_pred cEEEEEEeccCCcccc--ccCCCCCCCCCceEEeC
Confidence 8999999999988775 56778888999999997
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=196.19 Aligned_cols=110 Identities=28% Similarity=0.604 Sum_probs=98.3
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCc-ccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDK-KIVPKTANDIKLISAGKILENNKTVGQCKVPFGELP 81 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~-~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
+.+.|+|+||+++|+++ +++|++++||++||++|+++||.+| +++|.++++|||||+||+|+|++||++|+|+.++
T Consensus 14 ~~~~m~I~vktl~G~~~-~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~-- 90 (125)
T 2gow_A 14 PADMINLRLILVSGKTK-EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK-- 90 (125)
T ss_dssp CTTCEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS--
T ss_pred CCCeEEEEEEeCCCCEE-EEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC--
Confidence 34679999999999997 9999999999999999999999995 6787668999999999999999999999999887
Q ss_pred CCceEEEEEeCCCCccccccccc-CCcCCCCccEEeeC
Q 033470 82 KGTITMHVVVQPPLTKAKTEKKL-DEPQKKNFCSCSIL 118 (118)
Q Consensus 82 ~~~~t~hlv~~~~~~~~~~~~~~-~~~~~~~~c~C~i~ 118 (118)
.+||||++++.++++++++++ .++...++| |+||
T Consensus 91 --~~tlhlv~r~~~~~~~~~~~~~~~~~~~~~C-C~il 125 (125)
T 2gow_A 91 --TTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 125 (125)
T ss_dssp --EEEEEEEECSCCSSSSSCCCCCCCSTTCCCC-CCCC
T ss_pred --ceEEEEEecCCCCccccccccccCCCCCCCc-cEeC
Confidence 679999999999888876444 456778899 9998
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.96 E-value=2.7e-28 Score=170.28 Aligned_cols=98 Identities=27% Similarity=0.575 Sum_probs=87.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCc-ccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDK-KIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~-~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
++.|+|+||+++|+++ +|+|++++||++||++|+++||.|| +++|.++++|||||+||+|+|+.||++|+|+.++
T Consensus 14 ~~~m~I~vKtl~G~t~-~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~--- 89 (116)
T 1wgh_A 14 ADMINLRLILVSGKTK-EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK--- 89 (116)
T ss_dssp SSSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC---
T ss_pred CCeEEEEEEeCCCCEE-EEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC---
Confidence 4789999999999997 9999999999999999999999995 5665558999999999999999999999999886
Q ss_pred CceEEEEEeCCCCcccccccccCC
Q 033470 83 GTITMHVVVQPPLTKAKTEKKLDE 106 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~~~~~~~~~~ 106 (118)
.+||||++|+.++++++++.+.+
T Consensus 90 -~~tlhLvlr~~~~~~~~~~~~~~ 112 (116)
T 1wgh_A 90 -TTVMHLVARETLPEPNSQGQRSG 112 (116)
T ss_dssp -EEEEEEEECSSCSSSCCSSCCCC
T ss_pred -ceEEEEEccCCCCCCCccccccc
Confidence 67999999999988877665533
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=124.06 Aligned_cols=77 Identities=22% Similarity=0.180 Sum_probs=70.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..|+|+||+.+|+++ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 3 ~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~----- 69 (79)
T 3phx_B 3 EPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 69 (79)
T ss_dssp CCEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTCCTTC-----
T ss_pred CCEEEEEEeCCCCEE-EEEECCcChHHHHHHHHHhh-----cCCC--HHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 579999999999998 99999999999999999854 5677 8999999999999999999999999999
Q ss_pred eEEEEEeCCCC
Q 033470 85 ITMHVVVQPPL 95 (118)
Q Consensus 85 ~t~hlv~~~~~ 95 (118)
|+||++|..+
T Consensus 70 -~l~l~~rl~G 79 (79)
T 3phx_B 70 -TVFMNLRLRG 79 (79)
T ss_dssp -EEEEEECCBC
T ss_pred -EEEEEEecCC
Confidence 9999998753
No 5
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=1.8e-21 Score=128.92 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=73.9
Q ss_pred CCceEEEEEEecCCC--eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccC--CCCCC
Q 033470 3 EEELVELKFRLYDGS--DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQC--KVPFG 78 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~--~i~~g 78 (118)
++..|+|+||+.+|+ ++ .+++++++||++||++|++.+| .++| +++|||||+||+|+|+.+|++| +|.++
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~-~v~v~~~~TV~~lK~~I~~~~~---~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~ 77 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDL-ELSGDRGWSVGHLKAHLSRVYP---ERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKR 77 (93)
T ss_dssp CSCCCEEEEECSSSSCCCE-EEECCTTSCHHHHHHHHHHHST---TCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCS
T ss_pred CCcEEEEEEEeCCCCeEEE-EEecCCCCcHHHHHHHHHHHhc---CCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCC
Confidence 568899999999998 55 6777799999999999997754 2456 7999999999999999999999 99988
Q ss_pred CCCCCceEEEEEeCCCCccc
Q 033470 79 ELPKGTITMHVVVQPPLTKA 98 (118)
Q Consensus 79 ~~~~~~~t~hlv~~~~~~~~ 98 (118)
+ +|||++++.++++
T Consensus 78 ~------~i~lv~~~~gg~~ 91 (93)
T 1wgd_A 78 H------VLHLVCNVKSGPS 91 (93)
T ss_dssp E------EEEEECCCCCCCC
T ss_pred C------EEEEEeCCCCCCC
Confidence 8 9999999887755
No 6
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.85 E-value=3.1e-21 Score=126.91 Aligned_cols=81 Identities=25% Similarity=0.396 Sum_probs=69.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+++ .+++++++||++||++|++. .++| +++|||||+|+.|+|+.||++|+|.+|+ +
T Consensus 1 M~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~------~ 66 (88)
T 4fbj_B 1 MLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGGS------V 66 (88)
T ss_dssp CEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred CEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHH-----HCcC--hhHEEEEECCeECCCCCcHHHcCCCCCC------E
Confidence 6899999999998 99999999999999999854 5677 8999999999999999999999999999 9
Q ss_pred EEEEeCCCCcccccc
Q 033470 87 MHVVVQPPLTKAKTE 101 (118)
Q Consensus 87 ~hlv~~~~~~~~~~~ 101 (118)
+||+++..++....+
T Consensus 67 l~l~~rl~Gg~~~~~ 81 (88)
T 4fbj_B 67 LHLVLALRGGGGLRQ 81 (88)
T ss_dssp EEEECBCC-------
T ss_pred EEEEEECCCCCCCCc
Confidence 999999988876543
No 7
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.85 E-value=5e-21 Score=125.44 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=71.4
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+...|+|+||+.+|+.+ .++|++++||.+||++|++. .++| +++|||||+||.|+|+.+|++|+| .|+
T Consensus 2 ~~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g~--- 69 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGK--- 69 (90)
T ss_dssp CCCEEEEEEEETTCCEE-EEEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TTE---
T ss_pred CCcEEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCeECCCCCCHHHcCC-CCc---
Confidence 45789999999999998 99999999999999999854 4677 899999999999999999999999 787
Q ss_pred CceEEEEEeCCCCccc
Q 033470 83 GTITMHVVVQPPLTKA 98 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~~ 98 (118)
||||++++.++..
T Consensus 70 ---~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 70 ---VIHLVERAPPQTH 82 (90)
T ss_dssp ---EEEEEECCCC---
T ss_pred ---EEEEEecCCCCCC
Confidence 9999999766554
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.84 E-value=4e-21 Score=129.45 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=68.1
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
.++-|+|+||+..|+++ .++++|++||.+||++|+ +.+++| +++|||||+||+|+|..||++|+|.+|+
T Consensus 18 ~~~mIqI~Vk~~~Gkk~-~v~v~p~DTI~~LK~~I~-----~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dgs--- 86 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKV-RVKCLGEDSVGDFKKVLS-----LQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQT--- 86 (93)
T ss_dssp --CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHH-----HHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTTC---
T ss_pred CCceEEEEEECCCCCEE-EEEECCcCHHHHHHHHHH-----HHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCCC---
Confidence 36789999999999998 999999999999999998 447888 8999999999999999999999999999
Q ss_pred CceEEEEE
Q 033470 83 GTITMHVV 90 (118)
Q Consensus 83 ~~~t~hlv 90 (118)
|+||.
T Consensus 87 ---tLhL~ 91 (93)
T 3plu_A 87 ---NLELY 91 (93)
T ss_dssp ---EEEEE
T ss_pred ---EEEEE
Confidence 99985
No 9
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.8e-21 Score=127.65 Aligned_cols=76 Identities=28% Similarity=0.514 Sum_probs=67.0
Q ss_pred EEEEEEecCCCeeeeEEeC--CCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCC-CCCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYS--PTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKV-PFGELPKG 83 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~--~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i-~~g~~~~~ 83 (118)
|+|+||+++|+++ +++++ +++||.+||++|++ +.+++| +++|||||+||+|+|+.||++|+| ++|+
T Consensus 2 mqI~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~----~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~s---- 70 (87)
T 2lxa_A 2 VHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLIS----EEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANS---- 70 (87)
T ss_dssp CEEEEEECSSSCE-ECCEECCTTCBHHHHHHHHHH----TTSCSS--STTEEEEETTEECCTTCBHHHHCCCGGGC----
T ss_pred EEEEEEcCCCCEE-EEEEcCCCCCcHHHHHHHHHH----HhcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCCC----
Confidence 7899999999987 88755 99999999999932 335777 899999999999999999999999 6787
Q ss_pred ceEEEEEeCCCC
Q 033470 84 TITMHVVVQPPL 95 (118)
Q Consensus 84 ~~t~hlv~~~~~ 95 (118)
++||+.+++.
T Consensus 71 --tl~v~~~~~~ 80 (87)
T 2lxa_A 71 --TITVMIKPNL 80 (87)
T ss_dssp --EEEEEECCCC
T ss_pred --EEEEEcCCCc
Confidence 9999988764
No 10
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.84 E-value=1e-20 Score=122.80 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=72.8
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
+..|+|+||+.+|+.+ .+++++++||.+||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+++
T Consensus 10 ~~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~---- 77 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGGS---- 77 (88)
T ss_dssp CCCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBGGGGTCCTTC----
T ss_pred CCcEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCCC----
Confidence 5789999999999998 99999999999999999854 4677 8999999999999999999999999999
Q ss_pred ceEEEEEeCCCCc
Q 033470 84 TITMHVVVQPPLT 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
++||+++..++
T Consensus 78 --~i~l~~rl~GG 88 (88)
T 3dbh_I 78 --VLHLVLRLRGG 88 (88)
T ss_dssp --EEEECCCCCCC
T ss_pred --EEEEEEeCCCC
Confidence 99999998764
No 11
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.84 E-value=5e-21 Score=122.57 Aligned_cols=79 Identities=23% Similarity=0.290 Sum_probs=72.0
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
|+.|+|+||+.+|+.+ .+++++++||.+||++|+++ .++| +++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 1 m~~m~i~vk~~~g~~~-~~~v~~~~tv~~lk~~i~~~-----~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~~---- 68 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEED---- 68 (79)
T ss_dssp CCEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCHHHHTCCTTE----
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-----HCCC--cccEEEEECCEEeCCCCCHHHcCCCCCC----
Confidence 4679999999999998 99999999999999999854 5677 7999999999999999999999999998
Q ss_pred ceEEEEEeCCCCc
Q 033470 84 TITMHVVVQPPLT 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
++|++++..++
T Consensus 69 --~i~l~~~~~GG 79 (79)
T 2uyz_B 69 --VIEVYQEQTGG 79 (79)
T ss_dssp --EEEEEECCCC-
T ss_pred --EEEEEEeccCC
Confidence 99999987664
No 12
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.84 E-value=9.6e-21 Score=123.62 Aligned_cols=75 Identities=24% Similarity=0.422 Sum_probs=68.2
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.+.|+|+||+.+|+.+ .+++++++||++||++|++. .++| +++|||||+||.|+|+.+|++|+| .|+
T Consensus 14 ~~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i-~g~--- 81 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGK--- 81 (88)
T ss_dssp -CCEEEEEEEETTSCEE-EEEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TTE---
T ss_pred CCCeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCCCcHHHcCC-CCc---
Confidence 35789999999999998 99999999999999999854 4677 899999999999999999999999 688
Q ss_pred CceEEEEEeC
Q 033470 83 GTITMHVVVQ 92 (118)
Q Consensus 83 ~~~t~hlv~~ 92 (118)
|+||++|
T Consensus 82 ---~i~lv~R 88 (88)
T 4eew_A 82 ---VIHLVER 88 (88)
T ss_dssp ---EEEEEEC
T ss_pred ---EEEEEEC
Confidence 9999976
No 13
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.83 E-value=5.9e-21 Score=130.11 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=68.9
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+++.|+|+||+..|+++ .+++++++||++||++|+++ +++| +++|||||+||+|+|+.||++|+|.+++
T Consensus 25 ~~~mm~I~VKtl~Gk~i-~lev~p~dTV~~lK~~Ia~k-----~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~gs--- 93 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKV-RVKCNTDDTIGDLKKLIAAQ-----TGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDGM--- 93 (100)
T ss_dssp CCCEEEEEEECSSSSCE-EEEEETTSBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCSSCBHHHHTCCTTE---
T ss_pred CCCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCCCCHHHcCCCCCC---
Confidence 35679999999999998 99999999999999999844 6787 8999999999999999999999999998
Q ss_pred CceEEEEEe
Q 033470 83 GTITMHVVV 91 (118)
Q Consensus 83 ~~~t~hlv~ 91 (118)
|+||+-
T Consensus 94 ---tlhL~~ 99 (100)
T 1uh6_A 94 ---NLELYY 99 (100)
T ss_dssp ---EEEEEC
T ss_pred ---EEEEEe
Confidence 999874
No 14
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.83 E-value=2.7e-20 Score=125.97 Aligned_cols=78 Identities=27% Similarity=0.518 Sum_probs=67.8
Q ss_pred CceEEEEEEecCCCeeeeE--EeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCC-CCCCC
Q 033470 4 EELVELKFRLYDGSDIGPF--RYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKV-PFGEL 80 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~--~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i-~~g~~ 80 (118)
++.|+|+||+++|+.+ ++ ++++++||++||++|++. .+++| +++|||||+||+|+|+.||++|+| .+|+
T Consensus 17 ~~~m~I~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~----~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~- 88 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISE----EKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANS- 88 (98)
T ss_dssp -CCEEEEEEECSSSCE-EEEEEECTTCBHHHHHHHHHHT----TSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBC-
T ss_pred CCCEEEEEEcCCCCEE-EEEEecCCCChHHHHHHHHHHH----hcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCC-
Confidence 5789999999999986 66 666999999999999433 34677 899999999999999999999999 9898
Q ss_pred CCCceEEEEEeCCC
Q 033470 81 PKGTITMHVVVQPP 94 (118)
Q Consensus 81 ~~~~~t~hlv~~~~ 94 (118)
++||+++.+
T Consensus 89 -----ti~lmvskp 97 (98)
T 4a20_A 89 -----TITVMIKPN 97 (98)
T ss_dssp -----EEEEEECCC
T ss_pred -----EEEEEEeCC
Confidence 999998764
No 15
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.83 E-value=3.2e-20 Score=119.89 Aligned_cols=80 Identities=25% Similarity=0.364 Sum_probs=69.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..|+|+||+.+|+.+ .+++++++||++||++|++.|+ .+++| +++|||||+|+.|+|+.+|++|+|.+|+
T Consensus 4 ~~m~i~vk~~~g~~~-~~~v~~~~TV~~lK~~i~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~----- 73 (85)
T 2wyq_A 4 MAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN----- 73 (85)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHHHC--TTTCC--GGGEEEEETTEECCTTSBGGGGCCCTTS-----
T ss_pred ceEEEEEEECCCCEE-EEEECCCCCHHHHHHHHHhhcc--ccCCC--HHHeEEEECCEECcCCCCHHHcCCCCCC-----
Confidence 469999999999998 9999999999999999986541 24566 7999999999999999999999999998
Q ss_pred eEEEEEeCCCC
Q 033470 85 ITMHVVVQPPL 95 (118)
Q Consensus 85 ~t~hlv~~~~~ 95 (118)
++||+.++..
T Consensus 74 -~i~l~~~~~~ 83 (85)
T 2wyq_A 74 -FVVVMVTKTK 83 (85)
T ss_dssp -EEEEEEC---
T ss_pred -EEEEEEcCCC
Confidence 9999987643
No 16
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=4.1e-20 Score=120.68 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=73.9
Q ss_pred CCceEEEEEEecCC-CeeeeE-EeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCC
Q 033470 3 EEELVELKFRLYDG-SDIGPF-RYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGEL 80 (118)
Q Consensus 3 ~~~~i~l~~k~~~G-~~~~~~-~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~ 80 (118)
+.+.|+|+||+.+| +.+ .+ ++++++||.+||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~-~l~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g~- 74 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTC-TIEDVSRKATIEELRERVWAL-----FDVR--PECQRLFYRGKQLENGYTLFDYDVGLND- 74 (89)
T ss_dssp CSSCEEEEEEETTCSCEE-EEEEECTTCBHHHHHHHHHHH-----SCCC--TTTEEEEETTEECCSSSBHHHHTCCTTC-
T ss_pred CCCcEEEEEEECCCCceE-EEEecCCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCeECCCCCCHHHCCCCCCC-
Confidence 45789999999999 687 99 599999999999999854 4677 8999999999999999999999999998
Q ss_pred CCCceEEEEEeCCCCccc
Q 033470 81 PKGTITMHVVVQPPLTKA 98 (118)
Q Consensus 81 ~~~~~t~hlv~~~~~~~~ 98 (118)
+|||+++..++.+
T Consensus 75 -----~i~l~~~~~gG~~ 87 (89)
T 1wy8_A 75 -----IIQLLVRPDSGPS 87 (89)
T ss_dssp -----EEEEEECCCCSSC
T ss_pred -----EEEEEEeCCCCCC
Confidence 9999999887755
No 17
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.6e-20 Score=125.62 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=71.4
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
++..|+|+||+.+|+.+ .++|++++||.+||++|++. .++| +++|||+|+||.|+|+.+|++|+|.+|+
T Consensus 19 ~~~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~--- 87 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES--- 87 (98)
T ss_dssp ---CCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBSGGGTCCTTE---
T ss_pred CCCeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHCCCCCCC---
Confidence 35789999999999998 99999999999999999854 4677 8999999999999999999999999998
Q ss_pred CceEEEEEeCCCCc
Q 033470 83 GTITMHVVVQPPLT 96 (118)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (118)
+|||+++..++
T Consensus 88 ---~i~l~~rl~GG 98 (98)
T 4hcn_B 88 ---TLHLVLRLRGG 98 (98)
T ss_dssp ---EEEEECBCSCC
T ss_pred ---EEEEEEecCCC
Confidence 99999998764
No 18
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.82 E-value=3.4e-20 Score=122.17 Aligned_cols=76 Identities=24% Similarity=0.435 Sum_probs=70.7
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
+..|+|+||+.+|+++ .+++++++||.+||++|++. .++| +++|||+|+|+.|+|+.+|++|+|.+|+
T Consensus 15 ~~~m~i~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~---- 82 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES---- 82 (91)
T ss_dssp CCSEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBTGGGTCCTTC----
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhh-----hCCC--hhhEEEEECCeECCCcCcHHHCCCCCCC----
Confidence 5789999999999998 99999999999999999854 5677 8999999999999999999999999999
Q ss_pred ceEEEEEeCC
Q 033470 84 TITMHVVVQP 93 (118)
Q Consensus 84 ~~t~hlv~~~ 93 (118)
++||++|.
T Consensus 83 --~i~l~~rl 90 (91)
T 3v6c_B 83 --TLHLVLRL 90 (91)
T ss_dssp --EEEEECCC
T ss_pred --EEEEEEec
Confidence 99999885
No 19
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=1.8e-20 Score=122.93 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=69.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCee-cCCCCccccCCCCCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKI-LENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~-L~D~~tL~~~~i~~g~~~~~ 83 (118)
.-|+|++++.+|+.+ ++++++++||++||++|++. .++| +++|||||+|+. |+|+.||++|+|.+|+
T Consensus 9 ~~~~i~vk~l~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs---- 76 (84)
T 2kk8_A 9 SHMKFLVENLNGSSF-ELEVDYRDTLLVVKQKIERS-----QHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTS---- 76 (84)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTS----
T ss_pred CceEEEEEecCCcEE-EEEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCC----
Confidence 569999999999998 99999999999999999854 5677 899999999999 9999999999999998
Q ss_pred ceEEEEEeCC
Q 033470 84 TITMHVVVQP 93 (118)
Q Consensus 84 ~~t~hlv~~~ 93 (118)
++||++++
T Consensus 77 --~i~lv~~p 84 (84)
T 2kk8_A 77 --DIQLEVSS 84 (84)
T ss_dssp --CEEEEECC
T ss_pred --EEEEEEcC
Confidence 99999875
No 20
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=3e-20 Score=120.67 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=73.8
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
++..|+|+||+.+|+.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+++
T Consensus 4 ~~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g~--- 72 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSY-AYAINPNSFILGLKQQIEDQ-----QGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSD--- 72 (87)
T ss_dssp CSSSEEEEEEETTTEEE-EEEECSSSBHHHHHHHHHHH-----TCCC--TTTEEEEETTEECCSSSBHHHHTCCTTE---
T ss_pred CCCCEEEEEEcCCCCEE-EEEeCCCChHHHHHHHHHHH-----hCCC--hHHEEEEECCEEccCCCCHHHCCCCCCC---
Confidence 46789999999999998 99999999999999999854 4577 8999999999999999999999999998
Q ss_pred CceEEEEEeCCCCcc
Q 033470 83 GTITMHVVVQPPLTK 97 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~ 97 (118)
++||+++..++.
T Consensus 73 ---~i~l~~~~~GG~ 84 (87)
T 1wh3_A 73 ---TLILSKKKGSGP 84 (87)
T ss_dssp ---EEEEEECSCCCS
T ss_pred ---EEEEEEeccCCC
Confidence 999999987764
No 21
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=127.77 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=65.3
Q ss_pred CceEEEEEEecCCC--eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccC--CCCCCC
Q 033470 4 EELVELKFRLYDGS--DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQC--KVPFGE 79 (118)
Q Consensus 4 ~~~i~l~~k~~~G~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~--~i~~g~ 79 (118)
+..|+|+||+.+|+ ++ ++++++++||++||++|+++|| ++|. +++|||||+||+|+|+.||++| +|..++
T Consensus 21 ~~~m~I~VK~~~g~~~~i-~l~v~~~~TV~~LK~~I~~~~~----g~pp-~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ 94 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQ-TISCFLNWTVGKLKTHLSNVYP----SKPL-TKDQRLVYSGRLLPDHLQLKDILRKQDEYH 94 (99)
T ss_dssp --CEEEEEECTTSSSCCE-EEEECTTSBHHHHHHHHHHHST----TCCC-TTTCCEEETTEEECTTSBTHHHHTTTCSEE
T ss_pred CCeEEEEEEcCCCCEEEE-EEEcCCCCHHHHHHHHHHHHhc----CCCC-hhhEEEEECCEECCCCCCHHHHhcCCCCCC
Confidence 47799999999998 66 8899999999999999997664 3341 6999999999999999999999 999988
Q ss_pred CCCCceEEEEE
Q 033470 80 LPKGTITMHVV 90 (118)
Q Consensus 80 ~~~~~~t~hlv 90 (118)
|||||
T Consensus 95 ------tihLv 99 (99)
T 2kdb_A 95 ------MVHLV 99 (99)
T ss_dssp ------EEEEC
T ss_pred ------EEEeC
Confidence 99986
No 22
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=5.7e-20 Score=117.16 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=68.4
Q ss_pred ceEEEEEEecCCCeeeeEE-eCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFR-YSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
+.|+|+||+.+|+++..++ +++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~-----~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g~---- 69 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL-----FHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLND---- 69 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTTTTTCCTTC----
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCCHHHcCCCCCC----
Confidence 3689999999998833899 99999999999999854 5677 8999999999999999999999999998
Q ss_pred ceEEEEEeCC
Q 033470 84 TITMHVVVQP 93 (118)
Q Consensus 84 ~~t~hlv~~~ 93 (118)
++||++++
T Consensus 70 --~i~l~~r~ 77 (78)
T 2faz_A 70 --TIQLLVRQ 77 (78)
T ss_dssp --EEEEEECC
T ss_pred --EEEEEEeC
Confidence 99999986
No 23
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.82 E-value=4.4e-20 Score=122.04 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=70.4
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ .+++++++||.+||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+ +
T Consensus 2 m~i~vk~~~g~~~-~~~v~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~------~ 67 (96)
T 3k9o_B 2 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 67 (96)
T ss_dssp CEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred cEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhh-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 7899999999998 99999999999999999854 4677 8999999999999999999999999998 9
Q ss_pred EEEEeCCCCccccc
Q 033470 87 MHVVVQPPLTKAKT 100 (118)
Q Consensus 87 ~hlv~~~~~~~~~~ 100 (118)
|||+++..++.+.+
T Consensus 68 i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 68 LHLVLRLRGYADLR 81 (96)
T ss_dssp EEEEECCCC-----
T ss_pred EEEEEEcCCCCccc
Confidence 99999998887653
No 24
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.82 E-value=4.8e-20 Score=115.90 Aligned_cols=76 Identities=26% Similarity=0.427 Sum_probs=68.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.+|++|+|.+|+ +
T Consensus 1 M~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~------~ 66 (76)
T 1ndd_A 1 MLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGGS------V 66 (76)
T ss_dssp CEEEEECTTSCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBGGGGTCCTTC------E
T ss_pred CEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 6899999999998 99999999999999999854 4677 7999999999999999999999999998 9
Q ss_pred EEEEeCCCCc
Q 033470 87 MHVVVQPPLT 96 (118)
Q Consensus 87 ~hlv~~~~~~ 96 (118)
+|++++..++
T Consensus 67 i~l~~~~~GG 76 (76)
T 1ndd_A 67 LHLVLALRGG 76 (76)
T ss_dssp EEEEECCC--
T ss_pred EEEEEeCCCC
Confidence 9999997654
No 25
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=3.9e-20 Score=123.57 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=72.5
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCC-CccccCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENN-KTVGQCKVPFGELPK 82 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~-~tL~~~~i~~g~~~~ 82 (118)
-..|+|+||+.+| ++ .++|++++||++||++|++. .++| +++|||||+||.|+|+ .||++|+|.+|+
T Consensus 13 ~~~~~I~Vk~~~~-~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~gs--- 80 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QF-TVEVDRTETVSSLKDKIHIV-----ENTP--IKRMQLYYSGIELADDYRNLNEYGITEFS--- 80 (94)
T ss_dssp SCCEEEEEECSSC-EE-EEEECTTCBHHHHHHHHHHH-----SSSC--TTTEEEEETTEEECCTTSBHHHHTCCTTE---
T ss_pred CCCEEEEEEcCCc-EE-EEEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCEECCCCcccHHHCCCCCCC---
Confidence 3679999999988 77 99999999999999999854 5677 8999999999999999 999999999998
Q ss_pred CceEEEEEeCCCCccc
Q 033470 83 GTITMHVVVQPPLTKA 98 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~~ 98 (118)
+|||++++.++++
T Consensus 81 ---tl~lv~r~~gg~~ 93 (94)
T 2kan_A 81 ---EIVVFLKSINRAK 93 (94)
T ss_dssp ---EEEEEECCCSSCC
T ss_pred ---EEEEEEeCCCCCC
Confidence 9999999887754
No 26
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=122.44 Aligned_cols=80 Identities=21% Similarity=0.160 Sum_probs=69.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+.|+|+||+.+|+.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 3 ~~m~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g~----- 69 (88)
T 2hj8_A 3 EPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 69 (88)
T ss_dssp CEEEEEEEETTSCEE-EEEEESSSBHHHHHHHHHHH-----TCSC--TTTEEEESSSSCCCTTSBHHHHHCSTTC-----
T ss_pred ccEEEEEECCCCCEE-EEEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 469999999999998 99999999999999999854 5677 8999999999999999999999999998
Q ss_pred eEEEEEeCCCCccc
Q 033470 85 ITMHVVVQPPLTKA 98 (118)
Q Consensus 85 ~t~hlv~~~~~~~~ 98 (118)
++||+++..++..
T Consensus 70 -~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 70 -TVFMNLRLRGGLE 82 (88)
T ss_dssp -EEEEEEC------
T ss_pred -EEEEEEEcCCCcc
Confidence 9999999766653
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=3.9e-20 Score=119.12 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=69.4
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..|+|+||+.+|+++ .+++++++||.+||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+++
T Consensus 2 s~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 68 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTI-ILEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNHS----- 68 (85)
T ss_dssp --CEEEEECGGGCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETBEECCTTCBTTTTTCCTTC-----
T ss_pred CeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCeECCCCCCHHHCCCCCCC-----
Confidence 468999999999998 99999999999999999855 4577 7999999999999999999999999999
Q ss_pred eEEEEEeCCCCcc
Q 033470 85 ITMHVVVQPPLTK 97 (118)
Q Consensus 85 ~t~hlv~~~~~~~ 97 (118)
++||+++..++.
T Consensus 69 -~i~l~~rl~GG~ 80 (85)
T 3n3k_B 69 -ALYLLLKLRGGG 80 (85)
T ss_dssp -EEEEEECCC---
T ss_pred -EEEEEEeccCCC
Confidence 999999987764
No 28
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=7e-20 Score=117.76 Aligned_cols=79 Identities=20% Similarity=0.347 Sum_probs=71.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..|+|+||+.+|+.+ .+++++++||.+||++|++. .++| +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 2 s~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 68 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKWS----- 68 (85)
T ss_dssp -CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTGGGTCCTTC-----
T ss_pred CeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence 469999999999998 99999999999999999854 4567 7999999999999999999999999998
Q ss_pred eEEEEEeCCCCcc
Q 033470 85 ITMHVVVQPPLTK 97 (118)
Q Consensus 85 ~t~hlv~~~~~~~ 97 (118)
++||+++..++.
T Consensus 69 -~l~l~~r~~GG~ 80 (85)
T 3mtn_B 69 -TLFLLLRLRGGG 80 (85)
T ss_dssp -EEEEECCCCCC-
T ss_pred -EEEEEEECcCCC
Confidence 999999987764
No 29
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.81 E-value=3.3e-20 Score=124.17 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=71.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+.|+|+||+.+|+.+ .++|++++||.+||++|+++ .++| +++|||||+|+.|+|+.||++|+|..|+
T Consensus 20 ~~m~I~Vk~~~g~~~-~l~v~~~~tv~~lK~~i~~~-----~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~----- 86 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEED----- 86 (97)
T ss_dssp CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCHHHHTCCTTC-----
T ss_pred CcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCC-----
Confidence 569999999999998 99999999999999999854 5777 7999999999999999999999999999
Q ss_pred eEEEEEeCCCCc
Q 033470 85 ITMHVVVQPPLT 96 (118)
Q Consensus 85 ~t~hlv~~~~~~ 96 (118)
+|||+++..++
T Consensus 87 -~I~l~~~~~GG 97 (97)
T 1wyw_B 87 -VIEVYQEQTGG 97 (97)
T ss_dssp -EEEEEESSSCC
T ss_pred -EEEEEEecCCC
Confidence 99999997664
No 30
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=1.4e-19 Score=120.38 Aligned_cols=81 Identities=27% Similarity=0.387 Sum_probs=70.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ .++|++++||++||++|++.++ .+++| +++|||||+||.|+|+.||++|+|.+|+ +
T Consensus 1 M~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~------~ 69 (95)
T 1uel_A 1 MQVTLKTLQQQTF-KIDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKN------F 69 (95)
T ss_dssp CEEEEEETTCCEE-EEECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSS------E
T ss_pred CEEEEEeCCCCEE-EEEECCCCHHHHHHHHHHhhcc--cCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCC------E
Confidence 6899999999998 9999999999999999986541 14567 8999999999999999999999999998 9
Q ss_pred EEEEeCCCCccc
Q 033470 87 MHVVVQPPLTKA 98 (118)
Q Consensus 87 ~hlv~~~~~~~~ 98 (118)
+||+++...+.+
T Consensus 70 i~l~~~~~~~~~ 81 (95)
T 1uel_A 70 VVVMVTKPKAVS 81 (95)
T ss_dssp EEEEESSCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999987654443
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.81 E-value=1.3e-19 Score=113.89 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=69.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.+|++|+|.+|+ +
T Consensus 1 M~i~vk~~~g~~~-~i~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~------~ 66 (76)
T 3a9j_A 1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRES------T 66 (76)
T ss_dssp CEEEEEETTSCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTGGGTCCTTC------E
T ss_pred CEEEEEcCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCeECCCCCcHHHcCCCCCC------E
Confidence 6899999999998 99999999999999999854 4566 7999999999999999999999999998 9
Q ss_pred EEEEeCCCCc
Q 033470 87 MHVVVQPPLT 96 (118)
Q Consensus 87 ~hlv~~~~~~ 96 (118)
+|++++..++
T Consensus 67 i~l~~~~~GG 76 (76)
T 3a9j_A 67 LHLVLRLRGG 76 (76)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEeCCCC
Confidence 9999998664
No 32
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=116.03 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=70.4
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.+.|+|+|++.+|+.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.+|++|+|.+|+
T Consensus 4 ~~~~m~i~vk~~~g~~~-~~~v~~~~tV~~LK~~i~~~-----~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~--- 72 (81)
T 2dzi_A 4 GSSGMQLTVKALQGREC-SLQVPEDELVSTLKQLVSEK-----LNVP--VRQQRLLFKGKALADGKRLSDYSIGPNS--- 72 (81)
T ss_dssp SSSSEEEEEEETTSCEE-EEEECSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEECCTTSBGGGGTCCSSB---
T ss_pred CCCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCCC---
Confidence 45789999999999997 99999999999999999854 4567 7999999999999999999999999998
Q ss_pred CceEEEEEeCC
Q 033470 83 GTITMHVVVQP 93 (118)
Q Consensus 83 ~~~t~hlv~~~ 93 (118)
++|+++++
T Consensus 73 ---~i~l~~~~ 80 (81)
T 2dzi_A 73 ---KLNLVVKP 80 (81)
T ss_dssp ---CCEEECCC
T ss_pred ---EEEEEEeC
Confidence 99999875
No 33
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.3e-20 Score=124.83 Aligned_cols=78 Identities=26% Similarity=0.491 Sum_probs=67.4
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ .++|++++||.+||++|++. .++| +++|||||+||.|+|+.+|++|+|.+|+ +
T Consensus 2 m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~------~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKV-PLDLEPSNTILETKTKLAQS-----ISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGD------Q 67 (106)
T ss_dssp -CEEEECTTCCEE-EECCCTTSBHHHHHHHHHHT-----TTSC--GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred EEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCCC--hhhEEEEECCEECCCcCCHHHcCCCCCC------E
Confidence 7899999999998 99999999999999999865 4577 8999999999999999999999999999 9
Q ss_pred EEEEeCCCCccc
Q 033470 87 MHVVVQPPLTKA 98 (118)
Q Consensus 87 ~hlv~~~~~~~~ 98 (118)
|||+++...+.+
T Consensus 68 i~lv~~~~~~~~ 79 (106)
T 3m62_B 68 VVFMVSQKKSTK 79 (106)
T ss_dssp EEEECCC-----
T ss_pred EEEEEcCCCCCC
Confidence 999998655443
No 34
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=2.2e-19 Score=119.03 Aligned_cols=80 Identities=19% Similarity=0.378 Sum_probs=71.2
Q ss_pred CCCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCC-CccccCCCCCCCC
Q 033470 2 PEEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENN-KTVGQCKVPFGEL 80 (118)
Q Consensus 2 ~~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~-~tL~~~~i~~g~~ 80 (118)
++++.|+|+||+.+|+.+ .++|++++||++||++|++. . +++|||||+||.|+|+ .+|++|+|.+|+
T Consensus 3 ~~~~~m~i~Vk~~~g~~~-~~~v~~~~TV~~LK~~i~~~-----~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~- 70 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTEE-LAVARPEDTVGTLKSKYFPG-----Q-----ESQMKLIYQGRLLQDPARTLSSLNITNNC- 70 (95)
T ss_dssp CCCCSEEEEEEETTTEEE-EEEECSSSBHHHHHHHHSSS-----T-----TTTCEEEETTEECCCSSCBTTTTTCCTTE-
T ss_pred CCCCeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHhh-----C-----cCcEEEEECCEEccCCcCCHHHcCCCCCC-
Confidence 467899999999999997 99999999999999999743 2 4899999999999999 999999999998
Q ss_pred CCCceEEEEEeCCCCccc
Q 033470 81 PKGTITMHVVVQPPLTKA 98 (118)
Q Consensus 81 ~~~~~t~hlv~~~~~~~~ 98 (118)
+|||+++....++
T Consensus 71 -----~i~l~~~~~~~~~ 83 (95)
T 1wia_A 71 -----VIHCHRSPPGAAV 83 (95)
T ss_dssp -----EEEEECCCCCCCC
T ss_pred -----EEEEEECCCCCCC
Confidence 9999988655443
No 35
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1e-19 Score=119.64 Aligned_cols=78 Identities=24% Similarity=0.389 Sum_probs=66.8
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCce
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTI 85 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
-|+|++++.+|+++ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 9 ~~~i~v~~~~G~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------ 74 (88)
T 1sif_A 9 GLQLFIKTLTGKTF-TVEMEPSDTIENLKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------ 74 (88)
T ss_dssp -CEEEEEETTSCEE-EEECCTTSBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBSGGGTCCTTC------
T ss_pred ceEEEEEeCCCCEE-EEEECCCChHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCcHHHcCCCCCC------
Confidence 48999999999998 99999999999999999854 4677 8999999999999999999999999998
Q ss_pred EEEEEeCCCCcc
Q 033470 86 TMHVVVQPPLTK 97 (118)
Q Consensus 86 t~hlv~~~~~~~ 97 (118)
++||+++..++.
T Consensus 75 ~i~l~~r~~GG~ 86 (88)
T 1sif_A 75 TLHLVLRLRGGG 86 (88)
T ss_dssp EEEEEC------
T ss_pred EEEEEEeCCCCC
Confidence 999999987663
No 36
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=7.8e-20 Score=124.54 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=65.7
Q ss_pred EEEEEEecC----CCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 7 VELKFRLYD----GSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 7 i~l~~k~~~----G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
..|.|+..+ |+.+ +++|++++||++||++|+++ .++| +++|||||+||+|+|+.||++|+|.+|+
T Consensus 16 ati~V~~~~~~~~~~~~-~lev~~~~TV~~lK~kI~~k-----~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~gs--- 84 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKN-LLETRLHITGRELRSKIAET-----FGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNV--- 84 (100)
T ss_dssp EEEEEECCTTTCCSSSE-EEEEESSSBHHHHHHHHHHH-----TTCC--STTCEEEETTEECCTTSBHHHHTCCSSE---
T ss_pred EEEEEEecCCCCCCcEE-EEEeCCcCHHHHHHHHHHHH-----HCcC--HHHeEEEeCCeECCCCCcHHHcCCCCCC---
Confidence 355566666 7787 99999999999999999855 5677 8999999999999999999999999998
Q ss_pred CceEEEEEeCCCCccccc
Q 033470 83 GTITMHVVVQPPLTKAKT 100 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~~~~ 100 (118)
+|| ++++.+.+..+
T Consensus 85 ---ti~-vl~lrg~~~~~ 98 (100)
T 1wju_A 85 ---KAM-VLELKQSSGPS 98 (100)
T ss_dssp ---EEE-EECCCCCCCSC
T ss_pred ---EEE-EEEECCCCccc
Confidence 884 55666665543
No 37
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.80 E-value=1.9e-19 Score=123.29 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=71.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..|+|+||+.+|+.+ .+++++++||.+||++|++. .++| +++|||+|+|+.|+|+.+|++|+|..++
T Consensus 34 ~~m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~gs----- 100 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 100 (111)
T ss_dssp GCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTTTTTCCTTC-----
T ss_pred ccEEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHH-----hCCC--hHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 579999999999998 99999999999999999854 4677 8999999999999999999999999998
Q ss_pred eEEEEEeCCCCc
Q 033470 85 ITMHVVVQPPLT 96 (118)
Q Consensus 85 ~t~hlv~~~~~~ 96 (118)
+|||+++..++
T Consensus 101 -~I~l~~rl~GG 111 (111)
T 3vdz_A 101 -TLHLVLRLRGG 111 (111)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEecCCC
Confidence 99999998764
No 38
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.79 E-value=3.6e-19 Score=112.66 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=66.7
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCce
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTI 85 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|+|+|++ +|+.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.+|++|+|.+|+
T Consensus 4 ~m~i~vk~-~g~~~-~~~v~~~~tV~~LK~~i~~~-----~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~------ 68 (77)
T 2bwf_A 4 SLNIHIKS-GQDKW-EVNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDGH------ 68 (77)
T ss_dssp EEEEEEEE-TTEEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC------
T ss_pred EEEEEEEE-CCEEE-EEEECCCCcHHHHHHHHHHH-----hCCC--HHHEEEEECCeEcCCCCCHHHcCCCCCC------
Confidence 49999999 99897 99999999999999999854 5677 8999999999999999999999999998
Q ss_pred EEEEEeCC
Q 033470 86 TMHVVVQP 93 (118)
Q Consensus 86 t~hlv~~~ 93 (118)
++|++.++
T Consensus 69 ~i~l~~~~ 76 (77)
T 2bwf_A 69 SVHLVKSQ 76 (77)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 99998764
No 39
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.79 E-value=8.9e-21 Score=137.34 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=1.3
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+|++.+|+++ .++|++++||++||++|++. .++| +++|||||+|+.|+|+.||++|+|.+|+ |
T Consensus 1 MqI~VK~l~G~~~-~l~V~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gs------t 66 (152)
T 3u5c_f 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEEccccCcHHHcCCCCCC------E
Confidence 6899999999998 99999999999999999743 5677 8999999999999999999999999998 9
Q ss_pred EEEEeCCCCccccccccc
Q 033470 87 MHVVVQPPLTKAKTEKKL 104 (118)
Q Consensus 87 ~hlv~~~~~~~~~~~~~~ 104 (118)
|||++++.++++++.++.
T Consensus 67 L~Lvlrl~GGgKkrkKk~ 84 (152)
T 3u5c_f 67 LHLVLRLRGGGKKRKXXX 84 (152)
T ss_dssp ---------------CCC
T ss_pred EEEEeeccCCCcCccccc
Confidence 999999999987654443
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=1.3e-19 Score=120.21 Aligned_cols=79 Identities=24% Similarity=0.275 Sum_probs=71.7
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
++.|+|+|++. |+.+ .++|++++||.+||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 15 ~~~m~i~Vk~~-g~~~-~~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~---- 81 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCH-EFFLAENSNVRRFKKQISKY-----LHCN--ADRLVLIFTGKILRDQDILSQRGILDGS---- 81 (96)
T ss_dssp SCEEEEEEECS-SSEE-EEEEETTCCHHHHHHHHHHH-----TCSC--TTTBCCEETTEECCTTSCHHHHTCCTTE----
T ss_pred CCcEEEEEEEC-CeEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCcCCHHHCCCCCCC----
Confidence 47899999998 9897 99999999999999999854 4677 8999999999999999999999999998
Q ss_pred ceEEEEEeCCCCcc
Q 033470 84 TITMHVVVQPPLTK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
+|||+++..+++
T Consensus 82 --~i~l~~~~~~g~ 93 (96)
T 1wx8_A 82 --TVHVVVRSHSGP 93 (96)
T ss_dssp --EEECCBCCSSCS
T ss_pred --EEEEEEeCCCCC
Confidence 999999987654
No 41
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.7e-19 Score=120.69 Aligned_cols=79 Identities=28% Similarity=0.394 Sum_probs=71.2
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+||+.+|+ + .+++++++||.+||++|++. .++| +++|||||+||.|+|+.||++|+|.+|+
T Consensus 20 ~~~m~I~Vk~~~g~-~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~gs---- 86 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-E-DFSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGL---- 86 (100)
T ss_dssp TTEEEEEEECSSCE-E-EEEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBHHHHTCCTTC----
T ss_pred CCeEEEEEEcCCCc-E-EEEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHCCCCCCC----
Confidence 47899999999985 6 89999999999999999854 5677 8999999999999999999999999998
Q ss_pred ceEEEEEeCCCCcc
Q 033470 84 TITMHVVVQPPLTK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
+|||+++..+++
T Consensus 87 --tI~l~~r~~~~p 98 (100)
T 1yqb_A 87 --TVHLVIKRQHRA 98 (100)
T ss_dssp --EEEEEECCCCSC
T ss_pred --EEEEEEcCCCCC
Confidence 999999876654
No 42
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=5.2e-19 Score=120.02 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=70.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..|+|+||+.+|+.+ .++|++++||++||++|+.. .++| +++|||+|+|+.|+|+.+|++|+|..|+
T Consensus 22 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~----- 88 (106)
T 1ttn_A 22 YECQLRLRLSTGKDL-KLVVRSTDTVFHMKRRLHAA-----EGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDY----- 88 (106)
T ss_dssp CSEEEEEEETTTEEE-EEEECTTSHHHHHHHHHHHT-----TCCC--STTCEEEETTEECCTTSHHHHCCCSSSC-----
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 469999999999997 99999999999999999854 5677 8999999999999999999999999998
Q ss_pred eEEEEEeCCCCc
Q 033470 85 ITMHVVVQPPLT 96 (118)
Q Consensus 85 ~t~hlv~~~~~~ 96 (118)
+|||+++...+
T Consensus 89 -ti~lv~~~~~~ 99 (106)
T 1ttn_A 89 -VVQVIVSQPVQ 99 (106)
T ss_dssp -EEEEECCCSSC
T ss_pred -EEEEEEeCCCC
Confidence 99999886544
No 43
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=125.12 Aligned_cols=80 Identities=24% Similarity=0.295 Sum_probs=70.0
Q ss_pred CceEEEEEEec-CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 4 EELVELKFRLY-DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 4 ~~~i~l~~k~~-~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+..+.|+|++. +|+.+ .++|+++.||.+||++|+.. .++| +++|||||+||+|+|++||++|||+.|.
T Consensus 13 ~~~itvkv~l~~~~~k~-tv~v~~d~TV~dLKe~ls~~-----~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~--- 81 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEI-VIPFKVDTILKYLKDHFSHL-----LGIP--HSVLQIRYSGKILKNNETLVQHGVKPQE--- 81 (118)
T ss_dssp SSCEEEEEEETTTCCEE-EEEECSSSCSHHHHHHHHHH-----HTCC--TTTEEEEETTEEECSSCCHHHHSCCSSC---
T ss_pred CccEEEEEEEcCCCcEE-EEEeCCCCcHHHHHHHHHhh-----hCCC--hHHEEEEECCeEcCCcchHHHcCCCCCC---
Confidence 56788888854 57777 99999999999999999854 4677 8999999999999999999999999999
Q ss_pred CceEEEEEeCCCCcc
Q 033470 83 GTITMHVVVQPPLTK 97 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~ 97 (118)
||||+++...+.
T Consensus 82 ---TIhLvi~s~~p~ 93 (118)
T 2daf_A 82 ---IVQVEIFSTNPD 93 (118)
T ss_dssp ---EEEEEEEESCTT
T ss_pred ---EEEEEEecCCCc
Confidence 999999876554
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.78 E-value=6.3e-19 Score=117.46 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=70.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ .+++++++||++||++|++. .++| +++|||+|+||.|+|+.||++|+|.+|+ +
T Consensus 1 M~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~-----~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~ 66 (98)
T 1yx5_B 1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (98)
T ss_dssp CEEEEEETTSCEE-EEECCTTCBHHHHHHHHHHH-----TCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCCHHHcCCCCCC------E
Confidence 6899999999998 99999999999999999855 4567 7999999999999999999999999998 9
Q ss_pred EEEEeCCCCcccc
Q 033470 87 MHVVVQPPLTKAK 99 (118)
Q Consensus 87 ~hlv~~~~~~~~~ 99 (118)
+||+++..++.+.
T Consensus 67 i~l~~~~~gG~~i 79 (98)
T 1yx5_B 67 LHLVLRLRGGRDP 79 (98)
T ss_dssp EEEEECCCCC---
T ss_pred EEEEEeCCCCCcC
Confidence 9999998776543
No 45
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=6.4e-19 Score=119.32 Aligned_cols=80 Identities=28% Similarity=0.386 Sum_probs=71.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
...|+|+||..+|+ + .++|++++||.+||++|++. .++| +++|||||+||.|+|+.+|++|+|.+|+
T Consensus 15 ~~~m~I~Vk~~~g~-~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g~---- 81 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-E-DFSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGL---- 81 (106)
T ss_dssp SSEEEEEEECSSCE-E-EEEEETTCCHHHHHHHHHHH-----HTCC--TTTEEEEETTEECCTTSCHHHHTCCTTE----
T ss_pred CceEEEEEEeCCCc-E-EEEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCCC----
Confidence 57799999999885 6 89999999999999999854 4677 7999999999999999999999999998
Q ss_pred ceEEEEEeCCCCccc
Q 033470 84 TITMHVVVQPPLTKA 98 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~ 98 (118)
+|||+++..++..
T Consensus 82 --~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 82 --TVHLVIKRQHRAM 94 (106)
T ss_dssp --EEEEEECCCCCSC
T ss_pred --EEEEEEcCCCCCC
Confidence 9999998776654
No 46
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=118.87 Aligned_cols=78 Identities=24% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
++..|+|+|+.. |+.+ .++|++++||++||++|++. .++| +++|||||+|+.|+|+.||++|+|.+|+
T Consensus 22 ~~~~m~I~Vk~~-g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g~--- 89 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKE-EFAVPENSSVQQFKEEISKR-----FKSH--TDQLVLIFAGKILKDQDTLSQHGIHDGL--- 89 (101)
T ss_dssp -CCCEEEEEECS-SCEE-EEEECSCCCHHHHHHHHHHH-----HTCC--GGGEEEEETTEEECTTCCTGGGTCCTTC---
T ss_pred CCCeEEEEEEeC-CcEE-EEEECCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCCC---
Confidence 457899999998 8887 99999999999999999854 5677 8999999999999999999999999998
Q ss_pred CceEEEEEeCCCC
Q 033470 83 GTITMHVVVQPPL 95 (118)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (118)
+|||++++.+
T Consensus 90 ---~I~l~~~~~~ 99 (101)
T 2klc_A 90 ---TVHLVIKTQN 99 (101)
T ss_dssp ---EEEEEECCSS
T ss_pred ---EEEEEEcCCC
Confidence 9999988654
No 47
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=1.2e-19 Score=124.37 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=69.6
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCC-------------CCceeEEEcCeecC-CCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKT-------------ANDIKLISAGKILE-NNK 68 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~-------------~~~qrLIy~Gk~L~-D~~ 68 (118)
+..+|+|+|++++|+.+ +++|++++||++||++|++. .++|.. .++|||||+|++|. |++
T Consensus 4 ~~~~M~I~Vk~l~g~~~-~v~V~~~~TV~dLK~~I~~~-----~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~ 77 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVM-PVVVVQNATVLDLKKAIQRY-----VQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRK 77 (105)
T ss_dssp CCCSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHH-----HHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSS
T ss_pred CCCcEEEEEEecCCCEE-EEEECCCChHHHHHHHHHHH-----hCCCcccccCcceeeeeecceeEEEEeCCcCccCCcC
Confidence 34679999999999998 99999999999999999865 334310 14789999999996 679
Q ss_pred ccccCCCCCCCCCCCceEEEEEeCCCCc
Q 033470 69 TVGQCKVPFGELPKGTITMHVVVQPPLT 96 (118)
Q Consensus 69 tL~~~~i~~g~~~~~~~t~hlv~~~~~~ 96 (118)
||++|||.+|+ +||++++..+.
T Consensus 78 tL~dygI~~g~------~l~lv~~lr~~ 99 (105)
T 1v2y_A 78 KLRDYGIRNRD------EVSFIKKLGQK 99 (105)
T ss_dssp BHHHHTCCSSE------EEEEEECSCSC
T ss_pred CHHHcCCCCCC------EEEEEehhccC
Confidence 99999999999 99999997554
No 48
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.78 E-value=5.8e-19 Score=126.05 Aligned_cols=79 Identities=22% Similarity=0.167 Sum_probs=71.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+.|+|+||+.+|+++ ++++++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 80 ~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g~----- 146 (159)
T 3rt3_B 80 EPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 146 (159)
T ss_dssp CCEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTCCTTC-----
T ss_pred CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHH-----HCCC--HHHEEEEECCeecCCCCCHHHcCCCCCC-----
Confidence 568999999999998 99999999999999999854 5677 8999999999999999999999999999
Q ss_pred eEEEEEeCCCCcc
Q 033470 85 ITMHVVVQPPLTK 97 (118)
Q Consensus 85 ~t~hlv~~~~~~~ 97 (118)
|+||+++..++.
T Consensus 147 -~l~l~~rl~GG~ 158 (159)
T 3rt3_B 147 -TVFMNLRLRGGG 158 (159)
T ss_dssp -EEEEEECCC---
T ss_pred -EEEEEEecCCCC
Confidence 999999988764
No 49
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=7e-19 Score=123.26 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=68.5
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
+..|+|+||+. |+.+ .++|++++||.+||++|++. .++| +++|||||+||.|+|+.||++|+|.+|+
T Consensus 30 ~~~m~I~Vk~~-g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gs---- 96 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKE-EFAVPENSSVQQFKEAISKR-----FKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGL---- 96 (125)
T ss_dssp CCCEEEEEECS-SCEE-EEEECTTCCHHHHHHHHHHH-----HCSC--SSSEEEEETTEEESTTSCGGGTTCSSSE----
T ss_pred CCcEEEEEEeC-CeEE-EEEECCCCcHHHHHHHHHHH-----HCcC--cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 57899999999 9897 99999999999999999854 4677 7999999999999999999999999998
Q ss_pred ceEEEEEeCCCCccc
Q 033470 84 TITMHVVVQPPLTKA 98 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~ 98 (118)
+|||+++..++..
T Consensus 97 --tI~lv~~~~gg~~ 109 (125)
T 1j8c_A 97 --TVHLVIKRDPNSS 109 (125)
T ss_dssp --EEEEEEC------
T ss_pred --EEEEEeccCCCCC
Confidence 9999999877654
No 50
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=118.45 Aligned_cols=76 Identities=26% Similarity=0.246 Sum_probs=67.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..|+|+||+ |+.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 18 ~~m~I~Vk~--g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~gs----- 82 (93)
T 2l7r_A 18 GSMQLFVRA--QELH-TFEVTGQETVAQIKAHVASL-----EGIA--PEDQVVLLAGAPLEDEATLGQCGVEALT----- 82 (93)
T ss_dssp --CEEEEES--SSEE-EEECCSSCBHHHHHHHHHHH-----HTCC--GGGCEEEETTEECCTTSBHHHHTCCSSC-----
T ss_pred CcEEEEEEC--CCEE-EEEeCCCCcHHHHHHHHHHH-----hCcC--hhHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 568999998 8887 99999999999999999854 5677 8999999999999999999999999998
Q ss_pred eEEEEEeCCCCc
Q 033470 85 ITMHVVVQPPLT 96 (118)
Q Consensus 85 ~t~hlv~~~~~~ 96 (118)
+|||+++..++
T Consensus 83 -tI~lv~rl~GG 93 (93)
T 2l7r_A 83 -TLEVAGRMLGG 93 (93)
T ss_dssp -EEEEECCCCCC
T ss_pred -EEEEEEecCCC
Confidence 99999998764
No 51
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.78 E-value=5.9e-19 Score=120.51 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=72.9
Q ss_pred ceEEEEEEec---CCCeeeeEEeCC-CchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCC
Q 033470 5 ELVELKFRLY---DGSDIGPFRYSP-TSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGEL 80 (118)
Q Consensus 5 ~~i~l~~k~~---~G~~~~~~~v~~-~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~ 80 (118)
..|+|+|++. +|+.+ .+++++ ++||++||++|++. .++| +++|||+|+|++|+|+.+|++|+|..|+
T Consensus 26 ~~i~i~Vk~~~~~~g~~~-~l~v~~l~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g~- 96 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFM-EITVQSLSENVGSLKEKIAGE-----IQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGE- 96 (111)
T ss_dssp SCEEEEECCTTCSSSCCE-EEEESCSSSBHHHHHHHHHHH-----TTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSC-
T ss_pred CcEEEEEEecccCCCcEE-EEEecCCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEECCCCCcHHHCCCCCCC-
Confidence 6799999998 89897 999998 99999999999854 5677 8999999999999999999999999998
Q ss_pred CCCceEEEEEeCCCCccc
Q 033470 81 PKGTITMHVVVQPPLTKA 98 (118)
Q Consensus 81 ~~~~~t~hlv~~~~~~~~ 98 (118)
+|||+++..++.+
T Consensus 97 -----~l~l~~r~~GGk~ 109 (111)
T 1we6_A 97 -----ILTLSLRERSGPS 109 (111)
T ss_dssp -----EEEEECSSCCSSC
T ss_pred -----EEEEEEEcCCCCC
Confidence 9999999887743
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.78 E-value=8.3e-19 Score=128.36 Aligned_cols=79 Identities=22% Similarity=0.377 Sum_probs=70.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ .+++++++||.+||++|++. .++| +++|||||+|+.|+|+.+|++|+|.+|+ +
T Consensus 1 MqI~Vk~~~Gk~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~gs------t 66 (169)
T 3l0w_B 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (169)
T ss_dssp CEEEEEETTSCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCTTSBGGGGTCCTTC------E
T ss_pred CEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCccccCcCcHHHcCCCCCC------E
Confidence 6899999999998 99999999999999999854 4677 8999999999999999999999999999 9
Q ss_pred EEEEeCCCCcccc
Q 033470 87 MHVVVQPPLTKAK 99 (118)
Q Consensus 87 ~hlv~~~~~~~~~ 99 (118)
+||+++..++.+.
T Consensus 67 I~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 67 LHLVLRLRGGGGE 79 (169)
T ss_dssp EEEEECCCC---C
T ss_pred EEEEEEecccccc
Confidence 9999999887665
No 53
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.78 E-value=4e-19 Score=124.24 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=66.7
Q ss_pred EEEEEEecCCC-eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCC-CCCc
Q 033470 7 VELKFRLYDGS-DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGEL-PKGT 84 (118)
Q Consensus 7 i~l~~k~~~G~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~-~~~~ 84 (118)
|.+||+...++ ++ .+++++++||.+||++|++ .+++| +++|||||+||+|+|++||++|||..+.. +...
T Consensus 1 m~vFl~Ikr~ktTI-~ldve~sdTV~~lK~kI~~-----~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~ 72 (118)
T 4ajy_B 1 MDVFLMIRRHKTTI-FTDAKESSTVFELKRIVEG-----ILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAP 72 (118)
T ss_dssp CEEEEEEEEBTEEE-EEEEETTSBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBC
T ss_pred CceEEEEecCCEEE-EEEcCCCChHHHHHHHHHH-----HHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCC
Confidence 35677777777 65 8899999999999999974 46788 89999999999999999999999998333 3445
Q ss_pred eEEEEEeCCC
Q 033470 85 ITMHVVVQPP 94 (118)
Q Consensus 85 ~t~hlv~~~~ 94 (118)
.|+||++|..
T Consensus 73 atl~Lvlr~~ 82 (118)
T 4ajy_B 73 ATVGLAFRAD 82 (118)
T ss_dssp EEEEEEECCS
T ss_pred CEEEEEEecC
Confidence 5999999963
No 54
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.77 E-value=3.2e-19 Score=124.69 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=63.2
Q ss_pred EEEEEecCCC-eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCC-CCCce
Q 033470 8 ELKFRLYDGS-DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGEL-PKGTI 85 (118)
Q Consensus 8 ~l~~k~~~G~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~-~~~~~ 85 (118)
.++|+...|+ ++ .+++++++||++||++|++ .+++| +++|||||+||.|+|++||++|||.+... +....
T Consensus 2 ~mfl~ir~~ktti-~lev~~sdTV~~lK~kI~~-----~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~s 73 (118)
T 2fnj_B 2 DVFLMIRRHKTTI-FTDAKESSTVFELKRIVEG-----ILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPA 73 (118)
T ss_dssp EEEEEEEEBTEEE-EEEEETTSBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCE
T ss_pred cEEEEEecCCEEE-EEEeCCcChHHHHHHHHHH-----HhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCC
Confidence 4455555565 46 8999999999999999984 46788 89999999999999999999999994211 12234
Q ss_pred EEEEEeCCCCc
Q 033470 86 TMHVVVQPPLT 96 (118)
Q Consensus 86 t~hlv~~~~~~ 96 (118)
|+||++| .++
T Consensus 74 tL~L~lr-~~g 83 (118)
T 2fnj_B 74 TVGLAFR-ADD 83 (118)
T ss_dssp EEEEEEB-SSS
T ss_pred EEEEEec-CCC
Confidence 9999999 443
No 55
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.64 E-value=2.4e-20 Score=118.23 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=68.4
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+||+.+|+.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+ +
T Consensus 1 M~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~------~ 66 (76)
T 3b1l_X 1 MIVFVRFNSSYGF-PVEVDSDTSILQLKEVVAKQ-----QGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQS------I 66 (76)
Confidence 6899999999998 99999999999999999743 5677 8999999999999999999999999998 9
Q ss_pred EEEEeCCCC
Q 033470 87 MHVVVQPPL 95 (118)
Q Consensus 87 ~hlv~~~~~ 95 (118)
+||++++.+
T Consensus 67 i~l~~rlrg 75 (76)
T 3b1l_X 67 VHIVQRPRR 75 (76)
Confidence 999998754
No 56
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.77 E-value=1.2e-18 Score=119.77 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=72.7
Q ss_pred ceEEEEEEecC----------CCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCC
Q 033470 5 ELVELKFRLYD----------GSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCK 74 (118)
Q Consensus 5 ~~i~l~~k~~~----------G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~ 74 (118)
..|+|+|+..+ |+.+ .++|++++||.+||++|++. .++| +++|||+|+|+.|+|+.||++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~ 95 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGL-VFTLPLTDQVSVIKVKIHEA-----TGMP--AGKQKLQYEGIFIKDSNSLAYYN 95 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEE-EEEECSCSBTHHHHHHHHHH-----SSCC--TTTEEEEETTEEECTTSBHHHHT
T ss_pred CCEEEEEEcCCCccccccccCCeEE-EEEECCCCCHHHHHHHHHHH-----HCCC--hHHEEEEECCEECCCCCCHHHCC
Confidence 58999999864 6787 99999999999999999854 5677 89999999999999999999999
Q ss_pred CCCCCCCCCceEEEEEeCCCCcccc
Q 033470 75 VPFGELPKGTITMHVVVQPPLTKAK 99 (118)
Q Consensus 75 i~~g~~~~~~~t~hlv~~~~~~~~~ 99 (118)
|..|+ +|||+++..++.++
T Consensus 96 i~~g~------~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 96 MASGA------VIHLALKERSGPSS 114 (115)
T ss_dssp CCSSC------EEEEEECCCSCCSC
T ss_pred CCCCC------EEEEEEEcCCCCCC
Confidence 99998 99999999888664
No 57
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.8e-18 Score=119.18 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=73.2
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+..+|++++++|+.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 8 ~~~~i~vk~l~G~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gs----- 74 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRES----- 74 (114)
T ss_dssp CCCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTTTTTCCSSC-----
T ss_pred CcEEEEEEeCCCcEE-EEEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 567999999999998 99999999999999999854 5677 8999999999999999999999999998
Q ss_pred eEEEEEeCCCCccc
Q 033470 85 ITMHVVVQPPLTKA 98 (118)
Q Consensus 85 ~t~hlv~~~~~~~~ 98 (118)
+|||++++.++.+
T Consensus 75 -tI~l~~~~~GG~~ 87 (114)
T 2kdi_A 75 -TLHLVLRLRGGSM 87 (114)
T ss_dssp -EEEEEECCCSSCC
T ss_pred -EEEEEEEcCCCce
Confidence 9999999887753
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=117.43 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=71.1
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..|+|+||+.+|+.+ .+++++++||++||++|++. .++| +++|||+|+||.|+|+.||++|+|.+|+
T Consensus 34 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~gs----- 100 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 100 (111)
T ss_dssp SCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCSSCBTTTTTCCTTC-----
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 579999999999998 99999999999999999854 4667 8999999999999999999999999998
Q ss_pred eEEEEEeCCCCc
Q 033470 85 ITMHVVVQPPLT 96 (118)
Q Consensus 85 ~t~hlv~~~~~~ 96 (118)
+|||+++..++
T Consensus 101 -~I~l~~rl~GG 111 (111)
T 2ojr_A 101 -TLHLVLRLRGG 111 (111)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEeCCCC
Confidence 99999998664
No 59
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=2.7e-18 Score=116.76 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=69.3
Q ss_pred CceEEEEEEecCC---CeeeeEEeCC---------CchHHHHHHHhhccCCCCcccCCCCCCc-eeEEEcCeecCCCCcc
Q 033470 4 EELVELKFRLYDG---SDIGPFRYSP---------TSTVAMLKERIFSDWPKDKKIVPKTAND-IKLISAGKILENNKTV 70 (118)
Q Consensus 4 ~~~i~l~~k~~~G---~~~~~~~v~~---------~~TV~~lK~~I~~~wp~~~~~ip~~~~~-qrLIy~Gk~L~D~~tL 70 (118)
+..|+|+||+.+| +.+ .++|++ ++||.+||++|++..| .++| +++ |||||+||.|+|+.||
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~-~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~---~gip--~~~~qrLi~~Gk~L~D~~tL 83 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKS-ILQLPETELGEYSLGGYSISFLKQLIAGKLQ---ESVP--DPELIDLIYCGRKLKDDQTL 83 (107)
T ss_dssp CCSCCEEEEETTCTTSCCE-EECCCCCSSCSSCCCCCBHHHHHHHHHHHCT---TTCC--CSSSEEEEETTEECCTTCBH
T ss_pred CCceEEEEEeCCCCCccEE-EEEecCccccccCcccCCHHHHHHHHHHHhc---cCCC--hhhcEEEEECCeECCCCCcH
Confidence 4669999999999 787 888554 4999999999997643 1566 789 9999999999999999
Q ss_pred ccCCCCCCCCCCCceEEEEEeCCCCc
Q 033470 71 GQCKVPFGELPKGTITMHVVVQPPLT 96 (118)
Q Consensus 71 ~~~~i~~g~~~~~~~t~hlv~~~~~~ 96 (118)
++|+|..|+ +|||+++..+.
T Consensus 84 ~~y~i~~g~------~i~lv~~~~~~ 103 (107)
T 1x1m_A 84 DFYGIQPGS------TVHVLRKSWSG 103 (107)
T ss_dssp HHHTCCTTC------EEEEEESSCCS
T ss_pred HHcCCCCCC------EEEEEeCCCCC
Confidence 999999998 99999886543
No 60
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.75 E-value=2.6e-18 Score=128.32 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=73.2
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
-.|+|+||+.+|+++ .+++++++||++||++|++. .++| +++|||||+|+.|+|+.||++|+|.+++
T Consensus 104 ~eMqI~VKtl~Gkt~-~l~V~~s~TV~~LK~kI~~~-----~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~gs----- 170 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 170 (189)
T ss_dssp CCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTCBGGGGTCCTTC-----
T ss_pred cceeeeeecCCCCEE-EEEeCCCCcHHHHHHHHHhc-----cCCC--HHHEEEEECCEECCCCCCHHHCCCCCCC-----
Confidence 358999999999998 99999999999999999854 5677 8999999999999999999999999999
Q ss_pred eEEEEEeCCCCccc
Q 033470 85 ITMHVVVQPPLTKA 98 (118)
Q Consensus 85 ~t~hlv~~~~~~~~ 98 (118)
||||+++..++.+
T Consensus 171 -tI~LvlrlrGG~~ 183 (189)
T 3q3f_A 171 -TLHLVLRLRGGGQ 183 (189)
T ss_dssp -EEEECCCCCCCCC
T ss_pred -EEEEEEEcCCCCc
Confidence 9999999887754
No 61
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=4.2e-18 Score=114.80 Aligned_cols=81 Identities=9% Similarity=0.152 Sum_probs=70.3
Q ss_pred CceEEEEEEecCC----CeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCC-CccccCCCCCC
Q 033470 4 EELVELKFRLYDG----SDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENN-KTVGQCKVPFG 78 (118)
Q Consensus 4 ~~~i~l~~k~~~G----~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~-~tL~~~~i~~g 78 (118)
...|+|+|++.+| +.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+ .||++|+|.+|
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~-~i~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g 76 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTF-SLQVNPDFELSNFRVLCELE-----SGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDG 76 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEE-EEEECTTCBHHHHHHHHHHH-----TCCC--GGGBCEEETTEEECCSSSBHHHHTCCTT
T ss_pred CCeEEEEEEECCCCcCceEE-EEEcCCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCEECCCCcccHHHCCCCCC
Confidence 3568999999755 676 89999999999999999854 5677 8999999999999988 69999999999
Q ss_pred CCCCCceEEEEEeCCCCccc
Q 033470 79 ELPKGTITMHVVVQPPLTKA 98 (118)
Q Consensus 79 ~~~~~~~t~hlv~~~~~~~~ 98 (118)
+ ++||+.+..++.+
T Consensus 77 ~------~l~l~~~~~gg~~ 90 (102)
T 1v5o_A 77 D------MVVLLQKDNVGLR 90 (102)
T ss_dssp E------EEEECBCCCCCCS
T ss_pred C------EEEEEECCCCCCC
Confidence 8 9999988766654
No 62
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.4e-18 Score=117.44 Aligned_cols=75 Identities=25% Similarity=0.399 Sum_probs=65.5
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
...|+|+||. +|+.+ .+++++++||++||++|++. .++| +++|||||+||.|+|+.+|++|+|.+|+
T Consensus 26 ~m~i~I~Vk~-~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~g~---- 92 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKW-EVNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDGH---- 92 (101)
T ss_dssp ---CCEEEEC-SSCCC-CBCCCTTSBHHHHHHHHHHH-----HSCC--STTCCEEETTEECCTTSBTTTTTCCTTE----
T ss_pred CcEEEEEEEE-CCEEE-EEEeCCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCcCcHHHCCCCCCC----
Confidence 3567888887 88898 99999999999999999854 4677 8999999999999999999999999998
Q ss_pred ceEEEEEeCC
Q 033470 84 TITMHVVVQP 93 (118)
Q Consensus 84 ~~t~hlv~~~ 93 (118)
+|||+.+.
T Consensus 93 --tI~lv~~~ 100 (101)
T 3m63_B 93 --SVHLVKSQ 100 (101)
T ss_dssp --EEEECCCC
T ss_pred --EEEEEeCC
Confidence 99998764
No 63
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.74 E-value=8.3e-18 Score=121.88 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=72.7
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
+..|+|+||+.+|+++ .+++++++||.+||++|++. .++| +++|||+|+|+.|+|+.+|++|+|..++
T Consensus 18 ~~~m~i~Vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~-----~gip--~~~QrL~~~g~~L~d~~tL~~~~i~~~~---- 85 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES---- 85 (172)
T ss_dssp -CCEEEEEEETTTEEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTGGGTCCTTC----
T ss_pred CCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCccccccCCHhHcCCcccc----
Confidence 5789999999999998 99999999999999999854 5677 8999999999999999999999999998
Q ss_pred ceEEEEEeCCCCcc
Q 033470 84 TITMHVVVQPPLTK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
++||+++..++.
T Consensus 86 --~l~l~~~~~gg~ 97 (172)
T 3u30_A 86 --TLHLVLRLRGGM 97 (172)
T ss_dssp --EEEEEECCCCCE
T ss_pred --eeeeeecccccc
Confidence 999999877653
No 64
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.73 E-value=2e-19 Score=125.87 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=1.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+|++.+|+++ .++|++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+ |
T Consensus 1 M~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~gs------t 66 (128)
T 3u5e_m 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHH-----hCcC--hHHEEEEECCEECCCCCchhhhccCCCC------E
Confidence 6899999999998 99999999999999999743 5677 8999999999999999999999999998 9
Q ss_pred EEEEeCCCCccc
Q 033470 87 MHVVVQPPLTKA 98 (118)
Q Consensus 87 ~hlv~~~~~~~~ 98 (118)
|||+++..++..
T Consensus 67 i~l~~rl~GG~~ 78 (128)
T 3u5e_m 67 LHLVLRLRGGII 78 (128)
T ss_dssp ----------CC
T ss_pred EEEEEEcCCCCC
Confidence 999999888753
No 65
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.72 E-value=2.1e-17 Score=113.36 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred CceEEEEEEecCC--CeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCC-CCCCC
Q 033470 4 EELVELKFRLYDG--SDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKV-PFGEL 80 (118)
Q Consensus 4 ~~~i~l~~k~~~G--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i-~~g~~ 80 (118)
+=.|+++|++..+ ..+ +++++|++||++||++|+++ +++| +++|||||+|+.|+|++||++||| ..|+
T Consensus 22 ~i~l~v~v~d~~s~~~~i-~l~V~ps~TV~~LK~~I~~k-----~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G~- 92 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTI-WLTVRPDMTVASLKDMVFLD-----YGFP--PVLQQWVIGQRLARDQETLHSHGVRQNGD- 92 (105)
T ss_dssp CEEEEEEEEESSSCCEEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEEECTTCBTGGGTCCSTTC-
T ss_pred cEEEEEEEEccCCCCceE-EEEECCcChHHHHHHHHHHH-----hCCC--HHHEEEeccCeEccCcCcHHHcCCCCCCC-
Confidence 3468889999875 576 99999999999999999844 6888 899999999999999999999999 5898
Q ss_pred CCCceEEEEEeCCC
Q 033470 81 PKGTITMHVVVQPP 94 (118)
Q Consensus 81 ~~~~~t~hlv~~~~ 94 (118)
++||++-..
T Consensus 93 -----t~hL~l~~~ 101 (105)
T 4dbg_A 93 -----SAYLYLLSA 101 (105)
T ss_dssp -----EEEEEECCC
T ss_pred -----EEEEEEEec
Confidence 999998654
No 66
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=120.82 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=68.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+.+.|+|++.+|+++ ++++++++||.+||++|++. +++| +++|||+|+|+.|+|+.||++|+|..|+
T Consensus 95 gg~~i~Vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~-----~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g~----- 161 (172)
T 3u30_A 95 GGMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 161 (172)
T ss_dssp CCEEEEEEESSCCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBSGGGTCCTTC-----
T ss_pred ccccceeecccCcce-eEEecCCCCHHHHHHHHHHH-----hCCC--ceeEEEEECCccCCCCCcHHHhCCCCCC-----
Confidence 567899999999998 99999999999999999854 5777 8999999999999999999999999999
Q ss_pred eEEEEEeCCCCc
Q 033470 85 ITMHVVVQPPLT 96 (118)
Q Consensus 85 ~t~hlv~~~~~~ 96 (118)
|+||+++..++
T Consensus 162 -tl~l~~rlrgG 172 (172)
T 3u30_A 162 -TLHLVLRLRGG 172 (172)
T ss_dssp -EEEECC-----
T ss_pred -EEEEEEecCCC
Confidence 99999997654
No 67
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.71 E-value=3.6e-17 Score=114.73 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=70.7
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..++|+|++.+|+.+ .+++++++||++||++|++. .++| +++|||+|.|+.|+|+.||++|+|.+|+
T Consensus 75 ~~~~i~Vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~-----~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 141 (152)
T 3b08_A 75 GGMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 141 (152)
T ss_dssp TCEEEEEEESSSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC-----
T ss_pred cccceeeeecCCCEE-EEEeCCCCcHHHHHHHHHHH-----hCcC--hhhEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence 458899999999998 99999999999999999854 4677 8999999999999999999999999998
Q ss_pred eEEEEEeCCCCc
Q 033470 85 ITMHVVVQPPLT 96 (118)
Q Consensus 85 ~t~hlv~~~~~~ 96 (118)
++||+++..+|
T Consensus 142 -~i~l~~r~~GG 152 (152)
T 3b08_A 142 -TLHLVLRLRGG 152 (152)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEecCCC
Confidence 99999998764
No 68
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2.5e-17 Score=110.35 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=66.9
Q ss_pred CCceEEEEEEecCCCeeee-EEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGP-FRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELP 81 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~-~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
.++.|+|+||. .|+.+ . +++++++||.+||++|++. .++| +++|||||.||.|+|+ +|++|+|.+|+
T Consensus 4 ~~~~m~i~Vk~-~g~~~-~~l~v~~~~TV~~lK~~I~~~-----tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~-- 71 (96)
T 1wgg_A 4 GSSGYSVTVKW-GKEKF-EGVELNTDEPPMVFKAQLFAL-----TGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGM-- 71 (96)
T ss_dssp CCCEEEEEEEE-TTEEE-EEEEEESSSCHHHHHHHHHHH-----TCCC--TTTSCCEETTEECCSS-CCCSCCCCSSC--
T ss_pred CCcEEEEEEEE-CCEEE-EEEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCC--
Confidence 35789999996 67775 5 9999999999999999854 5677 8999999999999999 99999999998
Q ss_pred CCceEEEEEeCCC
Q 033470 82 KGTITMHVVVQPP 94 (118)
Q Consensus 82 ~~~~t~hlv~~~~ 94 (118)
+|||+..+.
T Consensus 72 ----~i~l~~~~~ 80 (96)
T 1wgg_A 72 ----TVLMMGSAD 80 (96)
T ss_dssp ----EEECCCCCC
T ss_pred ----EEEEEecch
Confidence 999986654
No 69
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.71 E-value=3e-17 Score=117.12 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=68.1
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE-E-cCeecCCCCccccCCCCCCCCCCC
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI-S-AGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI-y-~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.|+|+||+.+|+.+ ++++++++||++||++|++. .++| +++|||+ | +|+.|+|+.||++|+|..|+
T Consensus 2 ~m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~-----~gip--~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~---- 69 (159)
T 3rt3_B 2 GWDLTVKMLAGNEF-QVSLSSSMSVSELKAQITQK-----IGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPGS---- 69 (159)
T ss_dssp -CEEEEEETTSCEE-EEECCTTCCHHHHHHHHHHH-----HCCC--GGGEEEEEETTCCBCCTTSCGGGGTCCTTC----
T ss_pred ceEEEEEECCCCEE-EEEeCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEEcCCCCCCCCCCCHHHcCCCCCC----
Confidence 38999999999998 99999999999999999854 5677 8999999 9 89999999999999999999
Q ss_pred ceEEEEEeCC
Q 033470 84 TITMHVVVQP 93 (118)
Q Consensus 84 ~~t~hlv~~~ 93 (118)
++||+++.
T Consensus 70 --~l~l~~~~ 77 (159)
T 3rt3_B 70 --TVLLVVDK 77 (159)
T ss_dssp --EEEEEECC
T ss_pred --EEEEEccC
Confidence 99999984
No 70
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.7e-17 Score=107.69 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=67.2
Q ss_pred CceEEEEEEecCCCeeeeEEeCCC-----chHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCC-CCccccCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPT-----STVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILEN-NKTVGQCKVPF 77 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~-----~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D-~~tL~~~~i~~ 77 (118)
+..|+|+|+. .|+.+ .++++++ +||.+||++|++. .++| +++|||||.||.|+| +.+|++|+|..
T Consensus 5 ~~~~~v~Vk~-~~~~~-~i~v~~~~~~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~ 75 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKH-DLHVTSQQGSSEPVVQDLAQVVEEV-----IGVP--QSFQKLIFKGKSLKEMETPLSALGIQD 75 (92)
T ss_dssp CSSEEEEEEC-SSSEE-EEEECCCSSSSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEEECCSSSBHHHHTCCS
T ss_pred CCeEEEEEEE-CCEEE-EEEECCCcCcccCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeecCCCcccHHHCCCCC
Confidence 4679999998 58887 9999995 9999999999854 5677 899999999999998 66899999999
Q ss_pred CCCCCCceEEEEEeCCCCc
Q 033470 78 GELPKGTITMHVVVQPPLT 96 (118)
Q Consensus 78 g~~~~~~~t~hlv~~~~~~ 96 (118)
|+ +|||+.++..+
T Consensus 76 g~------~i~l~~~~~~~ 88 (92)
T 1wxv_A 76 GC------RVMLIGKKNSG 88 (92)
T ss_dssp SE------EEEEESCCSCS
T ss_pred CC------EEEEEecCCCC
Confidence 98 99998765443
No 71
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.70 E-value=1.8e-18 Score=129.35 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=1.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+|++++|+++ +|+|++++||.+||++|+ +.+++| +++|||||+|++|+|+.||+ .++ |
T Consensus 1 MqI~VKtL~Gkti-tLeV~~sdTV~~LK~kI~-----~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~S------T 61 (189)
T 2xzm_9 1 MQVQVKTLEGETK-IYTLEQGTSVLDLKSQIS-----QDMGFE--IDMMTLVNNGFIAPNTELVT-----DDV------T 61 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEE-EEEECCcChHHHHHHHHH-----HHhCcC--hhHEEEEecCeECCCCCccc-----CCC------E
Confidence 6899999999998 999999999999999997 446788 89999999999999999998 566 9
Q ss_pred EEEEeCCCCcccc
Q 033470 87 MHVVVQPPLTKAK 99 (118)
Q Consensus 87 ~hlv~~~~~~~~~ 99 (118)
|||++++.++.++
T Consensus 62 LhLvlRLrGG~~k 74 (189)
T 2xzm_9 62 YYLSLKLLGGKKK 74 (189)
T ss_dssp ----------CCC
T ss_pred EEEEEecCCCccc
Confidence 9999999888764
No 72
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=4.9e-17 Score=106.42 Aligned_cols=71 Identities=28% Similarity=0.336 Sum_probs=62.6
Q ss_pred EEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEE
Q 033470 9 LKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMH 88 (118)
Q Consensus 9 l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~h 88 (118)
++++..+|+.+ .+++++++||++||++|++. .++| +++|||+|+||.|+|+.+|++|+|.+|+ ++|
T Consensus 14 ~~~~~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~l~ 79 (85)
T 2kd0_A 14 KLTVKFGGKSI-PLSVSPDCTVKDLKSQLQPI-----TNVL--PRGQKLIFKGKVLVETSTLKQSDVGSGA------KLM 79 (85)
T ss_dssp EEEEEETTEEE-EEEECTTSBHHHHHHHHHHH-----HCCC--TTTCEEEETTEECCTTCBTTTTTCCTTE------EEE
T ss_pred EEEEEECCEEE-EEEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCeECCCcCCHHHCCCCCCC------EEE
Confidence 45566789998 99999999999999999854 5677 8999999999999999999999999998 999
Q ss_pred EEeCC
Q 033470 89 VVVQP 93 (118)
Q Consensus 89 lv~~~ 93 (118)
|+..+
T Consensus 80 l~~s~ 84 (85)
T 2kd0_A 80 LMASQ 84 (85)
T ss_dssp EECCC
T ss_pred EEEeC
Confidence 88653
No 73
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.69 E-value=2.5e-17 Score=108.70 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=67.6
Q ss_pred CCceEEEEEEecCCCeeeeE-EeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE---EcCeecCCCCccccCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPF-RYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI---SAGKILENNKTVGQCKVPFG 78 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~-~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI---y~Gk~L~D~~tL~~~~i~~g 78 (118)
.++.|+|+||. .|+.+ .+ ++++++||.+||++|++. .++| +++|||+ |.|+.|+|+.+|++|+|.+|
T Consensus 4 ~~~~m~i~Vk~-~g~~~-~i~~v~~~~TV~~lK~~I~~~-----~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g 74 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEY-SVTTLSEDDTVLDLKQFLKTL-----TGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPN 74 (90)
T ss_dssp CCCSCCEEEEE-TTEEE-EECSCCSSSBHHHHHHHHHHH-----TCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTT
T ss_pred CCceEEEEEEE-CCEEE-EEEEeCCCCCHHHHHHHHHHH-----HCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCC
Confidence 35679999997 78887 99 999999999999999854 5677 8999999 99999999999999999999
Q ss_pred CCCCCceEEEEEeCC
Q 033470 79 ELPKGTITMHVVVQP 93 (118)
Q Consensus 79 ~~~~~~~t~hlv~~~ 93 (118)
+ +|||+..+
T Consensus 75 ~------~l~l~~~~ 83 (90)
T 1v5t_A 75 T------KIMMMGTR 83 (90)
T ss_dssp E------EEEEECCC
T ss_pred C------EEEEEecC
Confidence 8 99998554
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.69 E-value=9.1e-17 Score=112.63 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=69.4
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+|++.+|+.+ .+++++++||++||++|++. .++| +++|||+|+|+.|+|+.||++|+|.+|+ +
T Consensus 1 M~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~-----~gip--~~~q~L~~~g~~L~d~~tL~~~~i~~~~------~ 66 (152)
T 3b08_A 1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (152)
T ss_dssp CEEEEEETTSCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred CEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCeECcCcccHHHhccCCCC------e
Confidence 6899999999998 99999999999999999854 4677 7999999999999999999999999998 9
Q ss_pred EEEEeCCCCc
Q 033470 87 MHVVVQPPLT 96 (118)
Q Consensus 87 ~hlv~~~~~~ 96 (118)
+|++.+..++
T Consensus 67 l~l~~~~~~~ 76 (152)
T 3b08_A 67 LHLVLRLRGG 76 (152)
T ss_dssp EEEEECCTTC
T ss_pred eEEEeecccc
Confidence 9999887654
No 75
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.69 E-value=4.4e-17 Score=132.06 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=72.3
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
...|+|+||+.+|+++ .|+|++++||.+||++|...|. .+++| +++|||||+||+|+|++||++|+|.+|+
T Consensus 5 ~~~M~I~VKtl~Gk~~-~leV~~~~TV~~LK~~I~~~~~--~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs---- 75 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN---- 75 (368)
T ss_dssp -CCCCEEEEETTTEEE-EECCCTTCBHHHHHHHHHHHTC--SSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS----
T ss_pred CceEEEEEEeCCCCEE-EEEeCCCChHHHHHHHHHHHhC--cCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC----
Confidence 5679999999999998 9999999999999999997652 35677 8999999999999999999999999998
Q ss_pred ceEEEEEeCCCCcc
Q 033470 84 TITMHVVVQPPLTK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
+++||+.++.++.
T Consensus 76 -tIv~lv~k~~~~~ 88 (368)
T 1oqy_A 76 -FVVVMVTKTKAGQ 88 (368)
T ss_dssp -CEEEEEECCCSSS
T ss_pred -EEEEEEecCCCCC
Confidence 2348888876544
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=5.7e-17 Score=108.19 Aligned_cols=74 Identities=30% Similarity=0.332 Sum_probs=64.7
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
++.|+|+|+. .|+.+ .+++++++||++||++|++. .++| +++|||+|.|+.|+| .+|++|+|..++
T Consensus 15 ~~~~~i~Vk~-~g~~~-~i~v~~~~TV~~LK~~I~~~-----tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~---- 80 (95)
T 1v86_A 15 KELVDLKIIW-NKTKH-DVKVPLDSTGSELKQKIHSI-----TGLP--PAMQKVMYKGLVPED-KTLREIKVTSGA---- 80 (95)
T ss_dssp CCCEEEEEEE-TTEEE-EEEECTTSBHHHHHHHHHHH-----HCSC--STTCCCBSSSBCCSS-SBHHHHCCCTTE----
T ss_pred CceEEEEEEE-CCEEE-EEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCeeCCc-CcHHHCCCCCCC----
Confidence 4679999995 68887 99999999999999999854 5777 899999999999955 599999999998
Q ss_pred ceEEEEEeCC
Q 033470 84 TITMHVVVQP 93 (118)
Q Consensus 84 ~~t~hlv~~~ 93 (118)
+|||+...
T Consensus 81 --~i~lv~~~ 88 (95)
T 1v86_A 81 --KIMVVGST 88 (95)
T ss_dssp --EEEECCSS
T ss_pred --EEEEEecc
Confidence 99998654
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=104.79 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=62.0
Q ss_pred eEEEEEEecCCCee-eeE-EeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc--CeecCCCCccccCCCCCCCCC
Q 033470 6 LVELKFRLYDGSDI-GPF-RYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA--GKILENNKTVGQCKVPFGELP 81 (118)
Q Consensus 6 ~i~l~~k~~~G~~~-~~~-~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~--Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
.|+|+|++..|+.+ ..+ +++|++||++||++|++.. +++| +++|||+|. ||+|+|++||++|+|.+++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~----~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~s-- 81 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTH----PQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTTA-- 81 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHC----SSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSEE--
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHh----cCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCCC--
Confidence 48999999998875 247 9999999999999998532 4566 799999977 9999999999999999987
Q ss_pred CCceEEEE
Q 033470 82 KGTITMHV 89 (118)
Q Consensus 82 ~~~~t~hl 89 (118)
|+|+
T Consensus 82 ----tl~~ 85 (88)
T 2dzj_A 82 ----TLYF 85 (88)
T ss_dssp ----EEEE
T ss_pred ----EEEE
Confidence 8775
No 78
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.65 E-value=4.8e-16 Score=102.59 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=62.0
Q ss_pred eEEEEEEec--CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE-------cCeecCCCCccccCCCC
Q 033470 6 LVELKFRLY--DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS-------AGKILENNKTVGQCKVP 76 (118)
Q Consensus 6 ~i~l~~k~~--~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy-------~Gk~L~D~~tL~~~~i~ 76 (118)
.|+|.|... +++.+ +..|++++||++||++|+ +.+++| +++||||| .|+.|+|+.||++|+|.
T Consensus 2 ~V~v~iths~~~~~~~-E~r~~~s~TI~~lK~ki~-----~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~ 73 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVP-EKRYGLAQTIESIKENVF-----THFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCR 73 (86)
T ss_dssp EEEEEEEETTCSCCEE-EEEEETTSBHHHHHHHHH-----TTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCC
T ss_pred EEEEEEEEcCCCCeEE-EEEcCccCcHHHHHHHHH-----HHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCC
Confidence 356666543 33444 899999999999999997 557888 89999997 69999999999999999
Q ss_pred CCCCCCCceEEEEEeCC
Q 033470 77 FGELPKGTITMHVVVQP 93 (118)
Q Consensus 77 ~g~~~~~~~t~hlv~~~ 93 (118)
.|+ |+||+-..
T Consensus 74 ~g~------~ihlvd~~ 84 (86)
T 4b6w_A 74 DEF------VIHVVDLQ 84 (86)
T ss_dssp TTC------EEEEEECC
T ss_pred CCC------EEEEEeCC
Confidence 999 99998553
No 79
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.65 E-value=4e-16 Score=104.76 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=64.6
Q ss_pred CCceEEEEEEecCCC--eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc--Ce---e-cCCCCccccCC
Q 033470 3 EEELVELKFRLYDGS--DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA--GK---I-LENNKTVGQCK 74 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~--Gk---~-L~D~~tL~~~~ 74 (118)
.++.|+|+|+...++ .+ +++|++++||++||++|+ +.+++| +++|||+|. |+ . ++|+.||++|+
T Consensus 12 ~~~~v~l~It~s~~~~~~~-~~~v~~~~TV~~LK~kI~-----~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~ 83 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAF-EVKLAKDLTVAQLKTKLE-----ILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYA 83 (95)
T ss_dssp CCCEEEEEEEESSCSCEEE-EEEEETTCBHHHHHHHHH-----HHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHC
T ss_pred CCCeEEEEEEECCCCceEE-EEEeCccCHHHHHHHHHH-----HHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCC
Confidence 468899999987664 66 999999999999999998 446888 899999998 55 3 49999999999
Q ss_pred CCCCCCCCCceEEEEE
Q 033470 75 VPFGELPKGTITMHVV 90 (118)
Q Consensus 75 i~~g~~~~~~~t~hlv 90 (118)
|..|+ |+||+
T Consensus 84 i~~gs------tihlv 93 (95)
T 2kjr_A 84 NSDGL------RLHVV 93 (95)
T ss_dssp CSSSC------EEEEE
T ss_pred cCCCC------EEEEE
Confidence 99999 99987
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.63 E-value=7.8e-16 Score=122.29 Aligned_cols=76 Identities=24% Similarity=0.436 Sum_probs=68.7
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
...|+|+||+.+|+.+ .+++++++||++||++|++. .++| +++|||||+||.|+|+.+|++|+|.+++
T Consensus 231 ~~~MqI~VKtl~Gk~~-~leV~~s~TV~dLK~kI~~~-----~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~gs---- 298 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES---- 298 (307)
T ss_dssp CCCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTGGGTCCTTC----
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEeCCeecCCCCCHHHcCCCCCC----
Confidence 4679999999999998 99999999999999999854 5677 8999999999999999999999999998
Q ss_pred ceEEEEEeCC
Q 033470 84 TITMHVVVQP 93 (118)
Q Consensus 84 ~~t~hlv~~~ 93 (118)
+|||++|.
T Consensus 299 --tL~LvlRL 306 (307)
T 3ai5_A 299 --TLHLVLRL 306 (307)
T ss_dssp --EEEEEC--
T ss_pred --EEEEEEeC
Confidence 99999875
No 81
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=8.2e-16 Score=103.71 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=64.8
Q ss_pred CCceEEEEEEecCC--CeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC---ee----cCCCCccccC
Q 033470 3 EEELVELKFRLYDG--SDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG---KI----LENNKTVGQC 73 (118)
Q Consensus 3 ~~~~i~l~~k~~~G--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G---k~----L~D~~tL~~~ 73 (118)
+++.|+|+|..... ..+ +++|++++||++||++|+. .+++| +++|||||.| +. ++|+++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~-e~~v~~~~TV~~LK~kIe~-----~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y 82 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSA-DARFSPQMSVEAVKEKLWK-----KCGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFF 82 (97)
T ss_dssp CCCCEEEEEEETTSSCCCE-EEEECTTCCHHHHHHHHHH-----HHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHH
T ss_pred CCceEEEEEEECCCCceEE-EEEeCCCChHHHHHHHHHH-----HHCcC--HHHeEEEEecCCCcccceecCCcCCHHHC
Confidence 46889999998555 366 9999999999999999984 47888 8999999998 33 5999999999
Q ss_pred CCCCCCCCCCceEEEEEe
Q 033470 74 KVPFGELPKGTITMHVVV 91 (118)
Q Consensus 74 ~i~~g~~~~~~~t~hlv~ 91 (118)
+|..|+ +|||+-
T Consensus 83 ~I~~g~------~Ihlvd 94 (97)
T 2kj6_A 83 SPFDGF------RLHIID 94 (97)
T ss_dssp CCCSCC------EEEEEE
T ss_pred CCCCCC------EEEEEe
Confidence 999999 999874
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7.8e-16 Score=104.50 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=66.5
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE--cCeecCCCCccccCCCCCCCCCCC
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS--AGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy--~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.|.++++...|+.+ ++++++++||++||++|+ +.+++| +++|||+| .|+ |+|+.+|++|+|+.|+
T Consensus 8 ~m~~~~vk~~Gk~~-~v~v~~~~TV~~LK~~I~-----~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~gs---- 74 (100)
T 2dzm_A 8 RMLDFRVEYRDRNV-DVVLEDTCTVGEIKQILE-----NELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKNN---- 74 (100)
T ss_dssp CEEEEEEECSSCEE-EEEEETTSBHHHHHHHHH-----HHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSEE----
T ss_pred ceEEEEEEeCCeEE-EEEECCCCcHHHHHHHHH-----HHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCCC----
Confidence 36677777899998 999999999999999998 447888 89999997 777 9999999999999998
Q ss_pred ceEEEEEeCCCCc
Q 033470 84 TITMHVVVQPPLT 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
||||++....+
T Consensus 75 --tL~lvl~~~~~ 85 (100)
T 2dzm_A 75 --SLYVLTPDLPP 85 (100)
T ss_dssp --EEEECCSSSCC
T ss_pred --EEEEEecCCCC
Confidence 99999886553
No 83
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=4.6e-15 Score=98.65 Aligned_cols=74 Identities=24% Similarity=0.163 Sum_probs=63.4
Q ss_pred CceEEEEEEecCCC-eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC---ee----cCCCCccccCCC
Q 033470 4 EELVELKFRLYDGS-DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG---KI----LENNKTVGQCKV 75 (118)
Q Consensus 4 ~~~i~l~~k~~~G~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G---k~----L~D~~tL~~~~i 75 (118)
+..|.|+|+...+. .+ ++++++++||++||++|+.. +++| +++|||+|.| +. |+|+.+|++|+|
T Consensus 5 ~~~v~l~I~~~~~~~~~-~~~v~~~~TV~~lK~ki~~~-----~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i 76 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRS-EKRYSRSLTIAEFKCKLELV-----VGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPV 76 (95)
T ss_dssp CCCEEEEEEETTSSSCE-EEEECTTSBHHHHHHHHHHH-----TCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSC
T ss_pred CcEEEEEEEECCCCeeE-EEEcCccCHHHHHHHHHHHH-----HCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCC
Confidence 56799999886553 55 89999999999999999844 6788 8999999987 44 689999999999
Q ss_pred CCCCCCCCceEEEEEe
Q 033470 76 PFGELPKGTITMHVVV 91 (118)
Q Consensus 76 ~~g~~~~~~~t~hlv~ 91 (118)
..|+ ++||+-
T Consensus 77 ~~g~------~l~v~d 86 (95)
T 1v6e_A 77 DDGC------RIHVID 86 (95)
T ss_dssp CTTC------EEEEBC
T ss_pred CCCC------EEEEEE
Confidence 9998 999874
No 84
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.1e-14 Score=97.46 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=72.5
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPK 82 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.+.|+|+|+..+|+.+ .+.|.+++++..|++.++++ .++| ++++||+|.|+.|++++|+++|++..|+
T Consensus 4 ~~~~i~ikVk~~~g~~i-~~~v~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD--- 72 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED--- 72 (94)
T ss_dssp --CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCTTTTTCCTTC---
T ss_pred CCCeEEEEEECCCCCEE-EEEECCCCHHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC---
Confidence 35789999999999998 99999999999999999844 5666 7999999999999999999999999999
Q ss_pred CceEEEEEeCCCCcc
Q 033470 83 GTITMHVVVQPPLTK 97 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~ 97 (118)
+||++++..++.
T Consensus 73 ---~Idv~~~~~GG~ 84 (94)
T 2io1_B 73 ---TIDVFQQQTGGV 84 (94)
T ss_dssp ---EEEEEECCEESC
T ss_pred ---EEEEEEeccCCC
Confidence 999999877663
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.54 E-value=9e-15 Score=99.45 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=65.4
Q ss_pred CceEEEEEEecCCCeeeeEEeC-CCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCe-----------e----cCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYS-PTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGK-----------I----LENN 67 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~-~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk-----------~----L~D~ 67 (118)
.+.|.|+||+.+|+. .++++ +++||.+||++|++. .++| +++|||+|.|+ . ++|+
T Consensus 5 ~~~M~irvrs~~G~~--~v~v~~~~~Tv~~LK~kI~~~-----~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~ 75 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLE--RVSVDGPHITVSQLKTLIQDQ-----LQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPN 75 (107)
T ss_dssp CCCEEEEEECSSCEE--EEEECCTTSBHHHHHHHHHHH-----SCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTT
T ss_pred CCeEEEEEECCCCCE--EEEECCCCCcHHHHHHHHHHH-----hCcC--cccCEEEECCccccccCccccccccccCCCC
Confidence 466999999999964 58999 999999999999854 4567 89999999998 4 6899
Q ss_pred CccccCCCCCCCCCCCceEEEEEeCC
Q 033470 68 KTVGQCKVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 68 ~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
.||++|+|..|+ +|||+...
T Consensus 76 ~tL~~~gi~~G~------~L~l~~~~ 95 (107)
T 1wf9_A 76 LRISSLNLAHGS------MVYLAYEG 95 (107)
T ss_dssp CBGGGTCCCTTC------EEECCCSS
T ss_pred CCHHHCCCCCCC------EEEEEeCC
Confidence 999999999999 99988663
No 86
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.49 E-value=2.6e-14 Score=113.79 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=65.1
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE---EcCeecCCCCccccCCCCCCC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI---SAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI---y~Gk~L~D~~tL~~~~i~~g~ 79 (118)
|++.|+|+|+. +|+.+ ++++++++||++||++|++ ..++| +++|||| |+|+.|+|+.+|++|+|+.|+
T Consensus 2 ~~~~i~i~Vk~-~g~~~-~v~v~~~~Tv~~lK~~I~~-----~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~ 72 (320)
T 3shq_A 2 EVKEVVVIVKW-SGKEY-PVDLTDQDTVEVLRHEIFR-----KTQVR--PERQKLLNLKYKGKTAADNVKISALELKPNF 72 (320)
T ss_dssp --CEEEEEEEE-TTEEE-EEEEETTSBHHHHHHHHHH-----HHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC--C
T ss_pred CCceEEEEEEE-CCEEE-EEEECCCCcHHHHHHHHHH-----HHCcC--HHHeEEeecccCCcccCccccHHHcCCCCCC
Confidence 45789999996 78887 9999999999999999984 46788 8999999 899999999999999999998
Q ss_pred CCCCceEEEEEeCC
Q 033470 80 LPKGTITMHVVVQP 93 (118)
Q Consensus 80 ~~~~~~t~hlv~~~ 93 (118)
+|||+-.+
T Consensus 73 ------~l~L~gs~ 80 (320)
T 3shq_A 73 ------KLMMVGST 80 (320)
T ss_dssp ------EEEEECCC
T ss_pred ------EEEEEccc
Confidence 99988443
No 87
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.49 E-value=1.4e-13 Score=95.50 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=62.8
Q ss_pred ceEEEEEEecCCC-eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC---ee----cCCCCccccCCCC
Q 033470 5 ELVELKFRLYDGS-DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG---KI----LENNKTVGQCKVP 76 (118)
Q Consensus 5 ~~i~l~~k~~~G~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G---k~----L~D~~tL~~~~i~ 76 (118)
..|+|+|+...+. .+ +++|++++||++||++|+. ..++| +++|||+|.| +. ++|+.+|++|+|.
T Consensus 5 ~~v~l~V~~~~~~~~~-e~~v~~~~TV~~lK~ki~~-----~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~ 76 (122)
T 1t0y_A 5 EVYDLEITTNATDFPM-EKKYPAGMSLNDLKKKLEL-----VVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR 76 (122)
T ss_dssp CEEEEEEEESSCCSCE-EEEEETTSBHHHHHHHHHH-----HHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCC
T ss_pred CEEEEEEEECCCCccE-EEEeCCCCcHHHHHHHHHH-----HhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCC
Confidence 3688888876553 55 8999999999999999984 46888 8999999988 43 5899999999999
Q ss_pred CCCCCCCceEEEEEeC
Q 033470 77 FGELPKGTITMHVVVQ 92 (118)
Q Consensus 77 ~g~~~~~~~t~hlv~~ 92 (118)
.|+ +|||+..
T Consensus 77 ~g~------~ihvvd~ 86 (122)
T 1t0y_A 77 DGY------RIHAVDV 86 (122)
T ss_dssp SSE------EEEEEEC
T ss_pred CCC------EEEEEeC
Confidence 998 9999853
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=1.5e-13 Score=91.60 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=72.1
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+|+..+|+.+ .|.|.+++++..|++.++++ .++| ++++||+|.|+.|++++|+++|++.+|+
T Consensus 3 ~~~i~ikVk~~~g~~v-~~~vk~~t~l~kl~~~y~~~-----~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD---- 70 (91)
T 2io0_B 3 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED---- 70 (91)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHH-----TTCC--STTEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 3679999999999998 99999999999999999854 5666 7999999999999999999999999999
Q ss_pred ceEEEEEeCCCCcc
Q 033470 84 TITMHVVVQPPLTK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
+||++++..++.
T Consensus 71 --~Idv~~~q~gg~ 82 (91)
T 2io0_B 71 --TIDVFQQQTGGV 82 (91)
T ss_dssp --EEEEEECCCCCC
T ss_pred --EEEEEEeccCCc
Confidence 999999877764
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.45 E-value=3.2e-13 Score=90.06 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=69.5
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+|+..+|+.+ .|.|.+++++..|++.++++ .++| ++++||+|.|+.|.+++|+++|++..|+
T Consensus 15 ~~~i~ikV~~~~g~~i-~~~v~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD---- 82 (93)
T 2d07_B 15 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED---- 82 (93)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEE-EEEEccCCHHHHHHHHHHHH-----hCCC--ccceEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 4689999999999988 99999999999999999844 5666 7899999999999999999999999999
Q ss_pred ceEEEEEeCCCCc
Q 033470 84 TITMHVVVQPPLT 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
+||++++..++
T Consensus 83 --~Idv~~~q~GG 93 (93)
T 2d07_B 83 --TIDVFQQQTGG 93 (93)
T ss_dssp --EEEEEECC---
T ss_pred --EEEEEeeccCC
Confidence 99999886553
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.44 E-value=1.2e-13 Score=90.21 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=60.5
Q ss_pred EEEEEEecCCCeeeeEE-eCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC--eecC---CCCccccCCCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFR-YSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG--KILE---NNKTVGQCKVPFGEL 80 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G--k~L~---D~~tL~~~~i~~g~~ 80 (118)
|+|+||+.+|+. .++ |++++||.+||++|+++ .++| +++|||+|++ |.|+ |+.+|++|||..|+
T Consensus 1 m~i~vr~~~G~~--~v~~l~~~~Tv~~Lk~~I~~~-----~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~- 70 (86)
T 2kzr_A 1 WRVRCKAKGGTH--LLQGLSSRTRLRELQGQIAAI-----TGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGD- 70 (86)
T ss_dssp CCEEEEETTEEE--EECSCCTTCBHHHHHHHHHHH-----TCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTC-
T ss_pred CEEEEEcCCCCE--EeeecCCCCCHHHHHHHHHHH-----hCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCC-
Confidence 579999999965 477 99999999999999865 4566 7999999984 8874 78999999999998
Q ss_pred CCCceEEEEEeC
Q 033470 81 PKGTITMHVVVQ 92 (118)
Q Consensus 81 ~~~~~t~hlv~~ 92 (118)
++||.-.
T Consensus 71 -----~l~v~~~ 77 (86)
T 2kzr_A 71 -----MLIVEED 77 (86)
T ss_dssp -----EEECCCC
T ss_pred -----EEEEEeC
Confidence 9998744
No 91
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=4.1e-13 Score=91.55 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=72.0
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+|+..+|+.+ .|.|.+++++..|+..++++ .++| ++++||+|.|+.|.+++|+++|++..|+
T Consensus 22 ~~~I~IkVk~~~g~~i-~~kVk~~t~l~kL~~~y~ek-----~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD---- 89 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED---- 89 (104)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSCHHHHHHHHHHH-----HTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 4689999999999998 99999999999999999844 5666 7899999999999999999999999999
Q ss_pred ceEEEEEeCCCCcc
Q 033470 84 TITMHVVVQPPLTK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
+||++++..++.
T Consensus 90 --~Idv~~~q~GG~ 101 (104)
T 1wz0_A 90 --TIDVFQQQTSGP 101 (104)
T ss_dssp --EEEECCCCCCCS
T ss_pred --EEEEEEeccCCC
Confidence 999998876654
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.40 E-value=8.6e-13 Score=83.76 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=64.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceE
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTIT 86 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
|+|+|+..+|+.+ .+.+.+++++..|++.++++ .++| ++++||+|.|+.|.+++|++++++..|+ +
T Consensus 2 i~lkV~~~~g~~v-~~~v~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD------~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED------T 67 (72)
T ss_dssp EEEEEECTTSCEE-EEEECTTSCTHHHHHHHHHH-----HTCC--TTTCEEEETTEECCTTCCTTTTTCCTTE------E
T ss_pred EEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC------E
Confidence 7899999999998 99999999999999999844 5666 7999999999999999999999999999 9
Q ss_pred EEEE
Q 033470 87 MHVV 90 (118)
Q Consensus 87 ~hlv 90 (118)
+|+.
T Consensus 68 Idv~ 71 (72)
T 1wm3_A 68 IDVF 71 (72)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9976
No 93
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.38 E-value=1.9e-12 Score=83.71 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=66.7
Q ss_pred CCceEEEEEEecCCC-eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCC
Q 033470 3 EEELVELKFRLYDGS-DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELP 81 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
+.+.|+|+|+..+|+ .+ .|.+.+++++..|++.++++ .+++ ++++||+|.|+.|.+++|++++++..|+
T Consensus 4 ~~~~i~ikV~~~~g~~~i-~~~i~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD-- 73 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQML-EISLSPDSPLKVLMSHYEEA-----MGLS--GHKLSFFFDGTKLSGKELPADLGLESGD-- 73 (79)
T ss_dssp CCCCEEEEEECSSTTCEE-EEEECTTSCHHHHHHHHHHH-----HTCT--TCCCEEEETTEECCSCCCHHHHTCCTTC--
T ss_pred CCCEEEEEEEeCCCCEEE-EEEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC--
Confidence 358899999999996 77 89999999999999999844 5666 7899999999999999999999999999
Q ss_pred CCceEEEEE
Q 033470 82 KGTITMHVV 90 (118)
Q Consensus 82 ~~~~t~hlv 90 (118)
+||+.
T Consensus 74 ----~Idv~ 78 (79)
T 3a4r_A 74 ----LIEVW 78 (79)
T ss_dssp ----EEEEE
T ss_pred ----EEEEe
Confidence 99974
No 94
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.38 E-value=7.4e-13 Score=91.18 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=71.4
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+|+..+|+.+ .|.|.+++++..|++.++++ .++| ++++||+|.|+.|.+++|+++|++..|+
T Consensus 24 ~~~I~IkVk~~~g~~i-~fkVk~~t~l~kL~~ay~ek-----~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD---- 91 (110)
T 2k8h_A 24 TALVAVKVVNADGAEM-FFRIKSRTALKKLIDTYCKK-----QGIS--RNSVRFLFDGTPIDETKTPEELGMEDDD---- 91 (110)
T ss_dssp CCCEEEEEEETTSCCE-EEEECTTSSHHHHHHHHHHH-----HTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEE----
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 3679999999999998 99999999999999999844 5666 7899999999999999999999999999
Q ss_pred ceEEEEEeCCCCc
Q 033470 84 TITMHVVVQPPLT 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
+||+++...++
T Consensus 92 --~Idv~~~q~Gg 102 (110)
T 2k8h_A 92 --VIDAMVEQTGG 102 (110)
T ss_dssp --EEEEECCCCCC
T ss_pred --EEEEEEcccCc
Confidence 99999887654
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.36 E-value=2.4e-12 Score=88.18 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=68.4
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+|+. +|+.+ .|.|.+++++..|++.++++ .+++ ++++||+|.|+.|.+++|+++|++..|+
T Consensus 29 ~~~I~IkV~~-~g~~i-~fkIk~tt~l~kL~~ay~ek-----~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD---- 95 (106)
T 2eke_C 29 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKR-----QGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 95 (106)
T ss_dssp CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEec-CCcEE-EEEeCCCCHHHHHHHHHHHH-----hCCC--cccEEEEECCeEcCCCCCHHHcCCCCCC----
Confidence 3679999999 99998 99999999999999999844 5666 7899999999999999999999999999
Q ss_pred ceEEEEEeCCCC
Q 033470 84 TITMHVVVQPPL 95 (118)
Q Consensus 84 ~~t~hlv~~~~~ 95 (118)
+||++++..+
T Consensus 96 --~Idv~~~q~G 105 (106)
T 2eke_C 96 --IIEAHREQIG 105 (106)
T ss_dssp --EEEEEECC--
T ss_pred --EEEEEeeccc
Confidence 9999988655
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.14 E-value=4.4e-10 Score=74.53 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=62.0
Q ss_pred CceEEEEEEe---cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC------ee-c-CCCCcccc
Q 033470 4 EELVELKFRL---YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG------KI-L-ENNKTVGQ 72 (118)
Q Consensus 4 ~~~i~l~~k~---~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G------k~-L-~D~~tL~~ 72 (118)
+.-|+|+|+. .+|..+ +..|++++||++||.+|+.. .++| +..|||.|.+ .+ | +|..+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~-e~~l~~~~TV~~LK~~i~~~-----~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~ 78 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQIL-EKQLPDSMTVQKVKGLLSRL-----LKVP--VSELLLSYESSKMPGREIELENDLQPLQF 78 (97)
T ss_dssp SCEEEEEEEESSCSSSCCE-EEEEETTSBHHHHHHHHHTT-----TTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGG
T ss_pred CccEEEEEEecCCCCCcEE-EEECCCCCCHHHHHHHHHHH-----HCCC--hhHeEEEEEcCCCCceeeccCCCcccHhh
Confidence 4568888886 467776 99999999999999999844 4677 8999999973 23 4 78999999
Q ss_pred CCCCCCCCCCCceEEEEEeC
Q 033470 73 CKVPFGELPKGTITMHVVVQ 92 (118)
Q Consensus 73 ~~i~~g~~~~~~~t~hlv~~ 92 (118)
|++.+|+ +|||+..
T Consensus 79 y~i~~G~------~I~V~d~ 92 (97)
T 1wjn_A 79 YSVENGD------CLLVRWS 92 (97)
T ss_dssp GTCCTTC------EEEEECC
T ss_pred cCCCCCC------EEEEEec
Confidence 9999999 9998764
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.01 E-value=1.7e-09 Score=74.96 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=67.9
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+|+..+|+.+ .|.|.+++++..|+...++. .+++ ++++||+|.|+.|.++.|.+++++.+|+
T Consensus 38 ~~~I~LKV~~qdg~ev-~fkIk~tt~L~KLm~aY~er-----~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD---- 105 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEED---- 105 (115)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHH-----HTCC--TTSEEEEETTEECCTTCCTTTTTCCTTC----
T ss_pred CCeEEEEEEcCCCCEE-EEEEccCChHHHHHHHHHHH-----hCCC--hhhEEEEECCeECCCCCCHHHcCCCCCC----
Confidence 3689999999999997 89999999999999999854 4555 7999999999999999999999999999
Q ss_pred ceEEEEEeCC
Q 033470 84 TITMHVVVQP 93 (118)
Q Consensus 84 ~~t~hlv~~~ 93 (118)
+|+++++.
T Consensus 106 --~IdV~~~Q 113 (115)
T 3kyd_D 106 --VIEVYQEQ 113 (115)
T ss_dssp --EEEEEECC
T ss_pred --EEEEEeec
Confidence 99988764
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.92 E-value=4.6e-09 Score=78.94 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=71.4
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+-|+|+|+. +|+.+ .|.+.+++++..|+...++ +.++| ++++||+|.|+.|.++.|.+++++.+|+
T Consensus 27 ~~~I~LkV~~-~g~~v-~fkIk~~t~l~kL~~ay~e-----r~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD---- 93 (200)
T 3pge_A 27 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 93 (200)
T ss_dssp CCCEEEEEEC-SSCEE-EEEECTTSCTHHHHHHHHH-----HHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEec-CCCEE-EEEEecCCHHHHHHHHHHH-----HhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 3568999974 88887 9999999999999999974 45676 7999999999999999999999999999
Q ss_pred ceEEEEEeCCCCcccc
Q 033470 84 TITMHVVVQPPLTKAK 99 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~~ 99 (118)
+||++++..++.+.
T Consensus 94 --~Idv~~~q~gg~kd 107 (200)
T 3pge_A 94 --IIEAHREQIGGGGE 107 (200)
T ss_dssp --EEEEEECCSCCC-C
T ss_pred --EEEEEeccCcCcCc
Confidence 99999998887654
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.7e-08 Score=75.87 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=71.3
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+|+ .+|+.+ .|.|.+++++..|+...++. .+++ ++++||+|.|+.|.+++|.+++++.+|+
T Consensus 55 ~e~InLKVk-~dG~eV-~FKIKrtTpL~KLmeAYcER-----qGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGD---- 121 (207)
T 3tix_A 55 ETHINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKR-----QGKE--MDSLTFLYDGIEIQADQTPEDLDMEDND---- 121 (207)
T ss_dssp CCEEEEEEE-CSSCEE-EEEEETTSCTHHHHHHHHHH-----TTCC--GGGSCEEETTEECCSSCCTTTTTCCTTE----
T ss_pred CCcEEEEEe-cCCCEE-EEEEccCChHHHHHHHHHHH-----hCCC--cccEEEEECCeecCCCCCHHHcCCCCCC----
Confidence 357899997 488887 99999999999999999854 4566 7999999999999999999999999999
Q ss_pred ceEEEEEeCCCCcccc
Q 033470 84 TITMHVVVQPPLTKAK 99 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~~ 99 (118)
+|+++++..++...
T Consensus 122 --tIDV~leQ~GG~~~ 135 (207)
T 3tix_A 122 --IIEAHREQIGGLPS 135 (207)
T ss_dssp --EEEECCCCCTTGGG
T ss_pred --EEEEEEeccCCCcc
Confidence 99999998877643
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.50 E-value=1.4e-08 Score=77.29 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=1.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+| ..+|+.+ .|.|.+++....|++..++ ..+++ ++++||+|.|+.|.+++|.+++++.+|+
T Consensus 19 ~e~InLKV-~qdGseV-~FKIKrtTpL~KLM~AYcE-----RqGLs--~~siRFLFDGqRI~dddTPadL~MEDGD---- 85 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEI-FFKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEE-EEEEccCChHHHHHHHHHH-----HhCCC--ccceEEEECCEecCCCCCHHHcCCCCCC----
Confidence 47788999 7788887 9999999999999999874 45666 7999999999999999999999999999
Q ss_pred ceEEEEEeCCCCccc
Q 033470 84 TITMHVVVQPPLTKA 98 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~ 98 (118)
+|+++++..++..
T Consensus 86 --tIDV~leQ~GG~~ 98 (227)
T 3v7o_A 86 --IIEAHREQIGGLT 98 (227)
T ss_dssp ------------CCC
T ss_pred --EEEEEecccCCch
Confidence 9999988877753
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.32 E-value=2.3e-06 Score=57.26 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=37.2
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILE 65 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~ 65 (118)
..+.. +.+.+.+++||..+|++|++ .++|| +++|+|||.|+.|.
T Consensus 21 ~~a~~-h~v~I~~~etv~~~ke~V~e-----qTgIp--~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 21 QQMTA-HKIYIHSYNTATIFHELVYK-----QTKII--SSNQELIYEGRRLV 64 (94)
T ss_dssp TTTEE-EEEEEETTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEEEC
T ss_pred ccceE-EEEEeccchHHHHHHHHHHH-----HhCCC--HHHHHHHhCCCccc
Confidence 34545 59999999999999999984 47888 89999999998765
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.28 E-value=4.2e-07 Score=58.71 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=52.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCee-----cCCCCccccCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKI-----LENNKTVGQCKVPFGE 79 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~-----L~D~~tL~~~~i~~g~ 79 (118)
+.|.|+||..+|.. -+++++++||.+|+++|++..+ ++ ++.+.|.++-.. +.++.+|+++||..|+
T Consensus 3 ~~m~lRvrs~~G~~--Ri~v~~~~t~~~L~~~I~~~~~-----i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd 73 (80)
T 2pjh_A 3 ESIIIRVQSPDGVK--RITATKRETAATFLKKVAKEFG-----FQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGD 73 (80)
T ss_dssp CCCCCEEECSSEEE--ECCCCSSCCHHHHHHHHHHHTC-----CC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC
T ss_pred CcEEEEEECCCCCE--EEEcCCcChHHHHHHHHHHHcC-----CC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCC
Confidence 45889999999954 5889999999999999997653 33 333333222222 4478899999999999
Q ss_pred CCCCceEEEEE
Q 033470 80 LPKGTITMHVV 90 (118)
Q Consensus 80 ~~~~~~t~hlv 90 (118)
+++|.
T Consensus 74 ------~l~l~ 78 (80)
T 2pjh_A 74 ------LLFLF 78 (80)
T ss_dssp ------CEEC-
T ss_pred ------EEEEe
Confidence 77754
No 103
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.23 E-value=9.4e-06 Score=52.84 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=61.3
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCC-ceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTAN-DIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~-~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.-|.+.+|.....++ .+.+.++++|..|=...... .+|| ++ .+||.|-|..|+.+.++.+|.+..|+
T Consensus 8 ~~~~~~~~~~~~~dl-~f~I~~~t~v~kLi~ayc~~-----~~I~--~~~~IrllFDGdRLdp~~tp~DlemeD~D---- 75 (82)
T 3goe_A 8 KLITLLLRSSKSEDL-RLSIPVDFTVKDLIKRYCTE-----VKIS--FHERIRLEFEGEWLDPNDQVQSTELEDED---- 75 (82)
T ss_dssp CEEEEEEEESSSCCE-EEEEETTSBHHHHHHHHHHH-----HTCC--CCTTCEEEETTEECCTTSBGGGSSCCTTC----
T ss_pred HHHHHhhhccCCCCe-EEEecCCCCHHHHHHHHHHH-----cCCC--cCceEEEEEcCcccCccCChhhhCCcCCc----
Confidence 357788888888888 99999999999998777643 4566 56 99999999999999999999999999
Q ss_pred ceEEEEEe
Q 033470 84 TITMHVVV 91 (118)
Q Consensus 84 ~~t~hlv~ 91 (118)
.|-+++
T Consensus 76 --~IDvmL 81 (82)
T 3goe_A 76 --QVSVVL 81 (82)
T ss_dssp --EEEEEC
T ss_pred --eeeeee
Confidence 665543
No 104
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.21 E-value=1.6e-07 Score=76.03 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=1.8
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+|+. +|+.+ .|.+..+++...|+...++ ..+++ ++++||+|.|+.|.+++|.+++++.+|+
T Consensus 19 ~~~I~LKV~~-~g~~v-~FkIk~~t~l~kLm~aY~~-----r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD---- 85 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcEE-EEEEecCChHHHHHHHHHH-----HhCCC--cceEEEEECCeECCCCCChHHcCCCccc----
Confidence 5788999987 67776 8999999999999999874 45565 7999999999999999999999999999
Q ss_pred ceEEEEEeCCCCcccc
Q 033470 84 TITMHVVVQPPLTKAK 99 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~~ 99 (118)
+|+++++..++++.
T Consensus 86 --~Idv~~~Q~g~~~~ 99 (360)
T 3ix6_A 86 --IIEAHREQIGGMRT 99 (360)
T ss_dssp -------------CHH
T ss_pred --hhhhhhccCchHHH
Confidence 99999998888764
No 105
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.18 E-value=5.1e-06 Score=62.07 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=69.1
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+++. +|+.+ .|.+..++....|++..++ +.++| ++++||+|.|+.+.+++|..++++.+++
T Consensus 19 ~~~i~ikv~~-~~~~v-~~~i~~~~~l~kl~~~y~~-----~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d---- 85 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (209)
T ss_dssp CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHH-----HHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCcEEEEEEc-CCCEE-EEEEeeCCHHHHHHHHHHH-----hhCCC--hheEEEEECCEeccCCCChHHhhhcccc----
Confidence 4789999987 77786 8999999999999999984 35666 8999999999999999999999999999
Q ss_pred ceEEEEEeCCCCcc
Q 033470 84 TITMHVVVQPPLTK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
++++.....++.
T Consensus 86 --~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 86 --IIEAHREQIGGS 97 (209)
T ss_dssp --EEEEECSCTTCC
T ss_pred --cchhhccccccc
Confidence 899887776653
No 106
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.14 E-value=1.1e-05 Score=54.08 Aligned_cols=69 Identities=10% Similarity=0.131 Sum_probs=60.0
Q ss_pred CCceEEEEEEecCCC-eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 3 EEELVELKFRLYDGS-DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+.+.|+|+++..+|+ .+ .|.+..+++...|....++. .+++ ++.+||+|.|..|..++|.+++++.+|+
T Consensus 22 ~~~~I~LkV~~~dg~~~v-~fkIk~~t~l~kLm~aY~~~-----~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTL-EVSLSRDSPLKTLMSHYEEA-----MGLS--GRKLSFFFDGTKLSGRELPADLGMESGD 91 (97)
T ss_dssp SCSEEEEEEEESSSSCEE-EEEEETTSCHHHHHHHHHHH-----TTCS--SSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred CCCeEEEEEEcCCCCEEE-EEEECCCChHHHHHHHHHHH-----HCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 358899999998995 66 89999999999999988755 2344 6899999999999999999999999998
No 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.84 E-value=2.3e-06 Score=68.64 Aligned_cols=80 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+|+. +|+.+ .|.+..+++...|+...+++ .+++ +.++||+|.|+.|.+++|.+++++.+|+
T Consensus 28 ~~~i~lkv~~-~~~~~-~~~i~~~~~~~~l~~~y~~~-----~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d---- 94 (389)
T 4da1_A 28 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKR-----QGKE--MDSLRFLYDGIRIQADQAPEDLDMEDND---- 94 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEE-EEEECCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 4678888887 77776 89999999999999999744 4555 7999999999999999999999999999
Q ss_pred ceEEEEEeCCCCccc
Q 033470 84 TITMHVVVQPPLTKA 98 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~ 98 (118)
+|++++...++..
T Consensus 95 --~i~~~~~q~gg~n 107 (389)
T 4da1_A 95 --IIEAHREQIGGEN 107 (389)
T ss_dssp ---------------
T ss_pred --Eeeeeeccccccc
Confidence 8888877666653
No 108
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.80 E-value=0.00013 Score=46.75 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=57.1
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE--cCeec---CCCCccccCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS--AGKIL---ENNKTVGQCKVPFG 78 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy--~Gk~L---~D~~tL~~~~i~~g 78 (118)
+....|.||+.+|+.+ .-.|..++||.+|..-|... +.+ ....+|+. -.|.| +.+.||+++|+..+
T Consensus 5 ~~~~~i~iRlpdG~r~-~~~F~~~~tl~~v~~fv~~~------~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~ 75 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFL-ERRFLASNKLQIVFDFVASK------GFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQ 75 (84)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHT------TCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCSE
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHc------CCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCC
Confidence 5778999999999987 88999999999999999753 112 46778873 36777 45789999999876
Q ss_pred CCCCCceEEEEE
Q 033470 79 ELPKGTITMHVV 90 (118)
Q Consensus 79 ~~~~~~~t~hlv 90 (118)
+ +++|-
T Consensus 76 a------~L~ve 81 (84)
T 3qx1_A 76 E------TLFLE 81 (84)
T ss_dssp E------EEEEE
T ss_pred C------EEEEE
Confidence 6 77653
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.51 E-value=0.00031 Score=45.58 Aligned_cols=71 Identities=17% Similarity=0.388 Sum_probs=56.8
Q ss_pred eEEEEEEe--cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 6 LVELKFRL--YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 6 ~i~l~~k~--~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
-|+|+|.+ ..|+.+ .+.++-..||..|++.+.+...-+. .+.+--++|+...|.+|.++++|++|+|..|+
T Consensus 4 yI~ITidl~~y~~~~~-DLRIP~~~tvK~Li~~l~ea~~l~~--~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 4 YIDITIDLKHYNGSVF-DLRLSDYHPVKKVIDIAWQAQSVSM--PPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp EEEEEEECTTTTCCEE-EEEEETTSBTTHHHHHHHHHSCCCS--CCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred EEEEEEEeeccCCceE-EEECCCchhHHHHHHHHHHHhCCCc--CCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 35666665 688898 9999999999999999987643222 22222589999999999999999999999998
No 110
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.47 E-value=0.00056 Score=45.71 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=60.8
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKG 83 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+|+. .|..+ -|.+..++...-|....++. .+.. ++.+|++|.|..+.++.|.+++++..|+
T Consensus 19 ~~~IniKV~~-~g~ev-~FkIK~tt~l~KL~~aYc~r-----~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~D---- 85 (95)
T 2l76_A 19 PRLFPLKIRC-RADLV-RLPLRMSEPLQSVVDHMATH-----LGVS--PSRILLLFGETELSPTATPRTLKLGVAD---- 85 (95)
T ss_dssp CCCEEEEEEC-SSSEE-EEEECSSSCTHHHHHHHHHH-----HTSC--GGGEEEEETTEECCTTSCHHHHTCCSSC----
T ss_pred CCeEEEEEEc-CCcEE-EEEEecCChHHHHHHHHHhh-----cCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCC----
Confidence 4669999995 67665 79999999999888887643 4554 7999999999999999999999999999
Q ss_pred ceEEEEEe
Q 033470 84 TITMHVVV 91 (118)
Q Consensus 84 ~~t~hlv~ 91 (118)
++-+++
T Consensus 86 --iID~~~ 91 (95)
T 2l76_A 86 --IIDCVV 91 (95)
T ss_dssp --EEEEEE
T ss_pred --EEEEEE
Confidence 666553
No 111
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.39 E-value=0.0014 Score=51.76 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=53.8
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE------cCeecCCCCccccCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS------AGKILENNKTVGQCKVPF 77 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy------~Gk~L~D~~tL~~~~i~~ 77 (118)
|..+.|+|... +.+ +.+.|+|++||.++..+|.++.|.... .+.++=-|.- .|+.|++++||+.|++.+
T Consensus 1 ~~~~~~~~~~~-~~~-~~~~f~~~~~v~~~~~~i~e~~~~~~~---~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~ 75 (371)
T 3ivf_A 1 MVALSLKISIG-NVV-KTMQFEPSTMVYDACRMIRERIPEALA---GPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRN 75 (371)
T ss_dssp -CCEEEEEEET-TEE-EEEEECTTCBHHHHHHHHHTTCGGGGS---SCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCT
T ss_pred CccEEEEEEec-cee-EEEEECCCCCHHHHHHHHHHhcccccC---CCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCC
Confidence 35788999987 545 699999999999999999998874211 1133334433 477899999999999998
Q ss_pred CC
Q 033470 78 GE 79 (118)
Q Consensus 78 g~ 79 (118)
|+
T Consensus 76 ~~ 77 (371)
T 3ivf_A 76 GD 77 (371)
T ss_dssp TC
T ss_pred Cc
Confidence 87
No 112
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=97.27 E-value=0.0017 Score=44.44 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=53.2
Q ss_pred ceEEEEEEecC--CCeeeeEEeCCCchHHHHHHHhhccCCCC--cccCCCCCCceeEEE----cCeecCCCC--------
Q 033470 5 ELVELKFRLYD--GSDIGPFRYSPTSTVAMLKERIFSDWPKD--KKIVPKTANDIKLIS----AGKILENNK-------- 68 (118)
Q Consensus 5 ~~i~l~~k~~~--G~~~~~~~v~~~~TV~~lK~~I~~~wp~~--~~~ip~~~~~qrLIy----~Gk~L~D~~-------- 68 (118)
.++.|++.... +..+ ++.+=..+||.++|++|....=.+ +...| .++++.|=+ +|++|.|.+
T Consensus 10 ~~ltl~v~~~~~~~~~i-~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP-~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~ 87 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAI-PVKVLNCDTISQVKEKIIDQVYRGQPCSCWP-RPDSVVLEWRPGSTAQILSDLDLTSQREGR 87 (111)
T ss_dssp CEEEEEEEETTSCCCCE-EEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---
T ss_pred EEEEEEEEecCCCCCce-eeeeeccCcHHHHHHHHHHHHHcCCccccCC-CCCceeeEEecCCCCccccccCccceecCc
Confidence 56777776543 4456 888889999999999998542111 11123 267888866 356787743
Q ss_pred -----ccccCCCCCCCCCCCceEEEEEeC
Q 033470 69 -----TVGQCKVPFGELPKGTITMHVVVQ 92 (118)
Q Consensus 69 -----tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
||+-|+|++|+ ||-|+.+
T Consensus 88 wkrLNTL~HY~V~dga------tl~l~~~ 110 (111)
T 4e71_A 88 WKRVNTLMHYNVRDGA------TLILSKV 110 (111)
T ss_dssp CCCCCBHHHHTCCTTC------EEEEEEC
T ss_pred ceEecchhhcCCCCCC------EEEEEeC
Confidence 67889999998 8877654
No 113
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.23 E-value=0.0011 Score=45.84 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=56.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEE--EcCeec--C-CCCccccCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLI--SAGKIL--E-NNKTVGQCKVPFG 78 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLI--y~Gk~L--~-D~~tL~~~~i~~g 78 (118)
+....|.||+.+|..+ .-.|..++||.+|..-|... +.+ .....|+ |-.|.| + .+.||.++++...
T Consensus 41 ~~~t~IqIRlPdG~rl-~~rF~~~~tl~~V~~fV~~~------~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~ps 111 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKRE-QITLPEQAKLLALVKHVQSK------GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQ 111 (124)
T ss_dssp SCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHH------HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSS
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhc------CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCCc
Confidence 5789999999999998 88999999999999999753 222 3567776 447778 3 4899999999876
Q ss_pred CCCCCceEEEEE
Q 033470 79 ELPKGTITMHVV 90 (118)
Q Consensus 79 ~~~~~~~t~hlv 90 (118)
. +++|.
T Consensus 112 a------~Liv~ 117 (124)
T 1wj4_A 112 E------TVFVQ 117 (124)
T ss_dssp B------CCEEE
T ss_pred e------EEEEE
Confidence 5 66654
No 114
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.20 E-value=0.0013 Score=45.48 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=53.7
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE--cCeecCC-CCccccCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS--AGKILEN-NKTVGQCKVPFG 78 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy--~Gk~L~D-~~tL~~~~i~~g 78 (118)
+....|.||+.+|..+ .-.|..++||.+|++-|....| +. . .....|+. -.|.|+| +.||+++|+...
T Consensus 50 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~-~~---~--~~~f~L~t~fPrk~l~d~~~TL~eagL~ps 120 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRL-VQKFNHSHRISDIRLFIVDARP-AM---A--ATSFVLMTTFPNKELADENQTLKEANLLNA 120 (127)
T ss_dssp SCCCCEEEEETTTTEE-EEECCSSCBHHHHHHHHHHHCS-GG---G--TSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHhCc-CC---C--CCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence 4678999999999998 8899999999999999987643 11 1 35567764 4677865 799999999854
No 115
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.15 E-value=0.0017 Score=43.82 Aligned_cols=75 Identities=9% Similarity=0.168 Sum_probs=56.8
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE--cCeecC---CCCccccCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS--AGKILE---NNKTVGQCKVPFG 78 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy--~Gk~L~---D~~tL~~~~i~~g 78 (118)
+....|.||+.+|+.+ .-.|..++||.+|.+-|.... +.+ .....|+- --|.|. .+.||+++|+...
T Consensus 11 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~-----~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps 82 (109)
T 2dzk_A 11 STIARIQFRLPDGSSF-TNQFPSDAPLEEARQFAAQTV-----GNT--YGNFSLATMFPRREFTREDYKRRLLDLELAPS 82 (109)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSBHHHHHHHHHHHH-----TTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSE
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcc-----CCC--CCceEEEcCCCCcCCcccccCCCHHHCCCCCc
Confidence 4678999999999998 899999999999999998652 111 24456653 456675 3789999999966
Q ss_pred CCCCCceEEEEEeC
Q 033470 79 ELPKGTITMHVVVQ 92 (118)
Q Consensus 79 ~~~~~~~t~hlv~~ 92 (118)
. ++++...
T Consensus 83 a------~L~v~~~ 90 (109)
T 2dzk_A 83 A------SVVLLPA 90 (109)
T ss_dssp E------EEEEECC
T ss_pred e------EEEEEEC
Confidence 5 7776543
No 116
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.14 E-value=0.00063 Score=47.66 Aligned_cols=66 Identities=21% Similarity=0.183 Sum_probs=51.3
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCC---------------------------------C--
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKT---------------------------------A-- 52 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~---------------------------------~-- 52 (118)
.|+|++++|+.. .+.|+.+.+|..++..|..+. +++.. -
T Consensus 13 ~LkV~llDg~~k-tl~VD~S~~V~~lv~~Ic~ki-----gI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 86 (128)
T 2kc2_A 13 PLKIRMLDGTVK-TIMVDDSKTVTDMLMTICARI-----GITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEK 86 (128)
T ss_dssp EEEEECTTSCEE-EEEEEECSSHHHHHHHHHHHH-----TCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCS
T ss_pred cEEEEcCCCCEE-EEEeCCCcCHHHHHHHHHHHh-----CCCCcccccccccccccccccCchhhccccccccchhHHHH
Confidence 589999999985 999999999999999998652 12210 0
Q ss_pred CceeEEE--cCeecCCCCccccCCCCCCC
Q 033470 53 NDIKLIS--AGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 53 ~~qrLIy--~Gk~L~D~~tL~~~~i~~g~ 79 (118)
..+||-. .+..|+++.||.++||.+++
T Consensus 87 ~k~kL~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 87 LKQKLHTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp SCCSCCCSSSEEEECSSSCHHHHTCCTTS
T ss_pred HHHHhcccCCCCcccCCCcHHHcCCCCCC
Confidence 1455532 35789999999999999998
No 117
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.05 E-value=0.0032 Score=42.29 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=56.2
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE--cCeecC--CCCccccCCCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS--AGKILE--NNKTVGQCKVPFGE 79 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy--~Gk~L~--D~~tL~~~~i~~g~ 79 (118)
+...+|.||+.+|+.+ .-.|..++||.+|..-|... +. .+...+|+. =.|.|. .+.||+++|+....
T Consensus 21 ~~~~~IqiRlpdG~r~-~rrF~~~~tl~~v~~fv~~~---~~-----~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a 91 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVL-RRRFFKSWNSQVLLDWMMKV---GY-----HKSLYRLSTSFPRRALEVEGGSSLEDIGITVDT 91 (109)
T ss_dssp SSEEEEEEECTTSCEE-EEEEESSSBTHHHHHHHHHH---TC-----CTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCE
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhc---CC-----CCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCe
Confidence 3579999999999997 88999999999999999754 11 135677764 366775 47999999999765
Q ss_pred CCCCceEEEEE
Q 033470 80 LPKGTITMHVV 90 (118)
Q Consensus 80 ~~~~~~t~hlv 90 (118)
+|+|.
T Consensus 92 ------~L~Ve 96 (109)
T 2cr5_A 92 ------VLNVE 96 (109)
T ss_dssp ------EEEEE
T ss_pred ------EEEEE
Confidence 77654
No 118
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.65 E-value=0.0097 Score=42.15 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=54.6
Q ss_pred ceEEEEEEecC------CCeeeeEEeCCCchHHHHHHHhhccCCCC--cccCCCCCCceeEEE----cCe-ecCCCC---
Q 033470 5 ELVELKFRLYD------GSDIGPFRYSPTSTVAMLKERIFSDWPKD--KKIVPKTANDIKLIS----AGK-ILENNK--- 68 (118)
Q Consensus 5 ~~i~l~~k~~~------G~~~~~~~v~~~~TV~~lK~~I~~~wp~~--~~~ip~~~~~qrLIy----~Gk-~L~D~~--- 68 (118)
.++.|.+-... ...+ ++.|=..+||.++|++|....=.+ +...| .++++-|=+ +|+ +|.|.+
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i-~VkVLdCDTItQvKeKiLDavYk~~PySqRP-~~~d~dLEwr~g~~g~liL~D~D~tS 100 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGV-PVKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTS 100 (138)
T ss_dssp CEEEEEEEEC-------CCCE-EEEEETTCBHHHHHHHHHHHHTTTSCGGGCC-CGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred EEEEEEEEccCCcccccCCce-eEEEeccccHHHHHHHHHHHHHcCCccccCC-CccceeEEEecCCcCceEeeccCCcc
Confidence 56777776542 2466 899989999999999998531001 11123 267777755 344 477742
Q ss_pred ----------ccccCCCCCCCCCCCceEEEEEeCCC
Q 033470 69 ----------TVGQCKVPFGELPKGTITMHVVVQPP 94 (118)
Q Consensus 69 ----------tL~~~~i~~g~~~~~~~t~hlv~~~~ 94 (118)
||+-|+|++|+ +|-|+.+..
T Consensus 101 ~~~~~wkrLNTL~HY~V~Dga------~l~l~~~~~ 130 (138)
T 2r2o_A 101 EVQGLWRRLNTLQHYKVPDGA------TVALVPCLT 130 (138)
T ss_dssp CEETTEEECCBHHHHTCCTTC------EEEEEEC--
T ss_pred cccCCceeecchhccCCCCCC------EEEEEECCC
Confidence 88999999999 888876643
No 119
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=96.59 E-value=0.013 Score=40.96 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=52.8
Q ss_pred eEEEEEEe--cCCCeeeeEEeCCCchHHHHHHHhhccCCCC--cccCCCCCCceeEEE-cC---e-ecCCC---------
Q 033470 6 LVELKFRL--YDGSDIGPFRYSPTSTVAMLKERIFSDWPKD--KKIVPKTANDIKLIS-AG---K-ILENN--------- 67 (118)
Q Consensus 6 ~i~l~~k~--~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~--~~~ip~~~~~qrLIy-~G---k-~L~D~--------- 67 (118)
++.|++-. .++..+ ++.+=..+||.++|++|...+=.+ +...| .++++.|=+ .| + +|.|.
T Consensus 4 ~ltl~~~~~~~~~~~i-~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 81 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSL-SVRAMDTDTLTQVKEKILEAFCKNVPYSQWP-RAEDVDLEWFASSTQSYILRDLDDTSVVEDG 81 (127)
T ss_dssp EEEEEEEEETSCCCCE-EEEEETTSBHHHHHHHHHHHHSTTSCGGGSC-CGGGEEEEEECSSSCEEECCSSSTTSCEETT
T ss_pred EEEEEEEecCCCCCce-eeeeeccCchhhhhHHHHHHHhccCCcccCC-CCcccceEEecCCCCceEeecCCCcceecCc
Confidence 34444433 234566 888888999999999998642111 11223 268888876 34 4 47763
Q ss_pred ----CccccCCCCCCCCCCCceEEEEEeCC
Q 033470 68 ----KTVGQCKVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 68 ----~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
.||+.|+|++|+ ||-|+.+.
T Consensus 82 ~krLNTL~HY~V~dga------tv~l~~~~ 105 (127)
T 3h6n_A 82 RKKLNTLAHYKIPEGA------SLAMSLID 105 (127)
T ss_dssp EECCCBTTTTTCCTTC------EEEEEECC
T ss_pred eeEeccccccCCCCCC------EEEEEEcc
Confidence 367889999998 88887664
No 120
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=96.20 E-value=0.017 Score=39.81 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=53.0
Q ss_pred ceEEEEEEecC---CCeeeeEEeCCCchHHHHHHHhhccCCCC--cccCCCCCCceeEEE-cC---e-ecCCC-------
Q 033470 5 ELVELKFRLYD---GSDIGPFRYSPTSTVAMLKERIFSDWPKD--KKIVPKTANDIKLIS-AG---K-ILENN------- 67 (118)
Q Consensus 5 ~~i~l~~k~~~---G~~~~~~~v~~~~TV~~lK~~I~~~wp~~--~~~ip~~~~~qrLIy-~G---k-~L~D~------- 67 (118)
.++.|++.... ...+ ++.+=..+||.++|++|....=.+ +...| .++++.|=+ .| + +|.|.
T Consensus 12 ~~ltl~v~~~~~~~~~~i-~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~ 89 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEV-PVKILNCDTITQVKEKILDAIFKNVPCSHRP-KAADMDLEWRQGSGARMILQDEDITTKIE 89 (117)
T ss_dssp CEEEEEECCC----CCCE-EEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECTTSCEEEECSSSTTCCC-
T ss_pred EEEEEEEEccCCCCCCce-EeeeecCCchHHHHHHHHHHHhcCCCcccCC-CCCceeEEEecCCCCceEeecCCCccEec
Confidence 56667665543 3345 788888999999999998532111 11223 267888866 34 3 46662
Q ss_pred ------CccccCCCCCCCCCCCceEEEEEeCC
Q 033470 68 ------KTVGQCKVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 68 ------~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
.||+.|+|++|+ ||-|+.+.
T Consensus 90 ~~wkrLNTL~HY~V~dga------tl~l~~~~ 115 (117)
T 4e74_A 90 NDWKRLNTLAHYQVPDGS------VVALVSKQ 115 (117)
T ss_dssp --CCCCCBHHHHTCCTTC------EEEEEECC
T ss_pred CcceEeccccccCCCCCC------EEEEEeCC
Confidence 367889999998 88887664
No 121
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.05 E-value=0.094 Score=34.50 Aligned_cols=75 Identities=9% Similarity=0.079 Sum_probs=60.2
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGT 84 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..|.+.|...+|+.. .+.+.|++++.+|=+....++ ++. +++-.|-|.+|.|+=.-.+.-.|++.|+
T Consensus 8 ~~m~v~Vl~~n~rr~-~VKvtp~t~L~~VL~eaC~K~-----gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnnA----- 74 (90)
T 2al3_A 8 GGSAVSVLAPNGRRH-TVKVTPSTVLLQVLEDTCRRQ-----DFN--PSEYDLKFQRTVLDLSLQWRFANLPNNA----- 74 (90)
T ss_dssp --CCEEEECTTSCEE-EECCCTTSBHHHHHHHHHHHT-----TCC--GGGCEEEETTEEESSSCBHHHHCCCSSC-----
T ss_pred CccEEEEEcCCCcEE-EEEECCCCCHHHHHHHHHHHh-----CCC--hhhCeEEeCCEeccccceeEecCCCCCC-----
Confidence 445899999999997 999999999999755555443 232 5788999999999989999999999998
Q ss_pred eEEEEEeCC
Q 033470 85 ITMHVVVQP 93 (118)
Q Consensus 85 ~t~hlv~~~ 93 (118)
.+-|+...
T Consensus 75 -kLELv~~s 82 (90)
T 2al3_A 75 -KLEMVPVS 82 (90)
T ss_dssp -EEEEECSS
T ss_pred -EEEEEEcc
Confidence 88887554
No 122
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=95.00 E-value=0.18 Score=35.10 Aligned_cols=76 Identities=26% Similarity=0.353 Sum_probs=48.0
Q ss_pred ceEEEEEEe---cCC------CeeeeEEeCCCchHHHHHHHhhccCCCCc--ccCCCC--CCceeEEE-cC---eecCCC
Q 033470 5 ELVELKFRL---YDG------SDIGPFRYSPTSTVAMLKERIFSDWPKDK--KIVPKT--ANDIKLIS-AG---KILENN 67 (118)
Q Consensus 5 ~~i~l~~k~---~~G------~~~~~~~v~~~~TV~~lK~~I~~~wp~~~--~~ip~~--~~~qrLIy-~G---k~L~D~ 67 (118)
.++.|.+.. ..| ..+ ++.+=..+||.++|++|...+ + .+.|.+ ++++.|=+ .| ++|.|.
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v-~VkVLdCDTItQVKEKILdav---Yk~k~~pys~r~~d~dLEwr~g~~~~~L~D~ 93 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNI-SVNVLDCDTIGQAKEKIFQAF---LSKNGSPYGLQLNEIGLELQMGTRQKELLDI 93 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEE-EEEEETTCBHHHHHHHHHHHH---HHHHSSCCSSCGGGEEEEEEETTEEEEECSS
T ss_pred EEEEEEEEeeccCCCcCcCcCCce-EeeeecCCcHHHHHHHHHHHH---hccCCCcCCCCccccceEEecCCCcceeecc
Confidence 455777776 322 355 888889999999999998532 1 123322 56677755 33 345442
Q ss_pred --------------CccccCCCCCCCCCCCceEEEEE
Q 033470 68 --------------KTVGQCKVPFGELPKGTITMHVV 90 (118)
Q Consensus 68 --------------~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
.||+-|+|++|+ +|-++
T Consensus 94 D~tS~~~e~~wkrLNTL~HY~V~Dga------tlal~ 124 (126)
T 3kuz_A 94 DSSSVILEDGITKLNTIGHYEISNGS------TIKVF 124 (126)
T ss_dssp CTTCCBCTTSCBCCCBTGGGTCCTTC------EEEEE
T ss_pred CCcceEecCCeeEeccccccCCCCCC------EEEEe
Confidence 245668899888 77554
No 123
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=93.76 E-value=0.42 Score=41.16 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=53.1
Q ss_pred ceEEEEEEecCC------CeeeeEEeCCCchHHHHHHHhhccCCCC--cccCCCCCCceeEEE----cCe-ecCCCC---
Q 033470 5 ELVELKFRLYDG------SDIGPFRYSPTSTVAMLKERIFSDWPKD--KKIVPKTANDIKLIS----AGK-ILENNK--- 68 (118)
Q Consensus 5 ~~i~l~~k~~~G------~~~~~~~v~~~~TV~~lK~~I~~~wp~~--~~~ip~~~~~qrLIy----~Gk-~L~D~~--- 68 (118)
.++.|.+....| ..+ ++.|=.++||.++|++|...-=.+ +...| .++++.|=+ .|+ +|.|.+
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i-~VkVLdCDTItQVKeKiLDavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts 333 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGV-PVKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTS 333 (644)
T ss_dssp CEEEEEEECC-------CCCE-EEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred eeEEEEEeecCccccCCCCce-eeEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCCcceEEeeCCCCceeecccCccc
Confidence 566777765433 345 788889999999999998421001 11233 267777765 244 577754
Q ss_pred ----------ccccCCCCCCCCCCCceEEEEEeCC
Q 033470 69 ----------TVGQCKVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 69 ----------tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
||+.|+|++|+ +|-|+.+.
T Consensus 334 ~~~~~wkrLNTL~HY~V~dga------~v~L~p~~ 362 (644)
T 3hm6_X 334 EVQGLWRRLNTLQHYKVPDGA------TVALVPCL 362 (644)
T ss_dssp CEETTEEECCBTTTTTCCTTC------EEEEEEC-
T ss_pred eecCcceeecchhhcCCCCCc------EEEEEecc
Confidence 78999999998 77776554
No 124
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.56 E-value=0.3 Score=30.47 Aligned_cols=50 Identities=10% Similarity=0.273 Sum_probs=36.7
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNK 68 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~ 68 (118)
|+|+|+.. |....++++++..||++|=+.+ ++| ++..-...+|+++.-+.
T Consensus 1 M~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~L---------gl~--~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 1 MNVTVEVV-GEETSEVAVDDDGTYADLVRAV---------DLS--PHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp CEEEEECS-SSSEEEEECSTTCSHHHHHHTT---------CCC--SSCCCEECCCCCCCTTS
T ss_pred CEEEEEEe-CccceeEEcCCCCcHHHHHHHc---------CCC--cceEEEEECCEECCHHH
Confidence 56788877 4433478999999999998777 344 45666788999886555
No 125
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=93.14 E-value=0.8 Score=39.33 Aligned_cols=81 Identities=16% Similarity=0.292 Sum_probs=53.9
Q ss_pred ceEEEEEEecCC---CeeeeEEeCCCchHHHHHHHhhccCCCC--cccCCCCCCceeEEE----cCe-ecCCC-------
Q 033470 5 ELVELKFRLYDG---SDIGPFRYSPTSTVAMLKERIFSDWPKD--KKIVPKTANDIKLIS----AGK-ILENN------- 67 (118)
Q Consensus 5 ~~i~l~~k~~~G---~~~~~~~v~~~~TV~~lK~~I~~~wp~~--~~~ip~~~~~qrLIy----~Gk-~L~D~------- 67 (118)
.++.|.+....| ..+ ++.|=.++||.++|++|....=.+ +...| .++++.|=+ .|+ +|.|.
T Consensus 232 ~~ltL~v~~~~~~~~~~i-~vkVLdCDTItQVKeKiLdavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 309 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQV-PVKVLNCDSITQAKDKLLDTVYKGIPYSQRP-KAEDMDLEWRQGRMARIILQDEDITTKIE 309 (627)
T ss_dssp CEEEEEEECTTTC--CEE-EEEEETTCBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEESCSSCEEEECSSSTTCCEE
T ss_pred eeEEEEEeccCCCCCCce-eeEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCccceeEeeCCCCceeeccCCcccccc
Confidence 566777765543 456 888889999999999998521001 11233 267788865 344 46652
Q ss_pred ------CccccCCCCCCCCCCCceEEEEEeCC
Q 033470 68 ------KTVGQCKVPFGELPKGTITMHVVVQP 93 (118)
Q Consensus 68 ------~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
.||+.|+|++|+ ||-|+.+.
T Consensus 310 ~~wkrLNTL~HY~V~Dga------~v~L~p~~ 335 (627)
T 3ig3_A 310 CDWKRVNSLAHYQVTDGS------LVALVPKQ 335 (627)
T ss_dssp TTEEECCBTTTTTCCTTC------EEEEEEC-
T ss_pred CceeEecchhhcCCCCCc------eEEEEecc
Confidence 367899999998 88887665
No 126
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=91.51 E-value=2.1 Score=28.68 Aligned_cols=81 Identities=7% Similarity=0.007 Sum_probs=48.1
Q ss_pred ceEEEEEEecC------CC--eeeeEEeCC---CchHHHHHHHhhccCCCCcccC--CC-C-CCceeEEEcCe---ecCC
Q 033470 5 ELVELKFRLYD------GS--DIGPFRYSP---TSTVAMLKERIFSDWPKDKKIV--PK-T-ANDIKLISAGK---ILEN 66 (118)
Q Consensus 5 ~~i~l~~k~~~------G~--~~~~~~v~~---~~TV~~lK~~I~~~wp~~~~~i--p~-~-~~~qrLIy~Gk---~L~D 66 (118)
+.|+|+|++.. |. .+ +++++. ..||.+|-..|.+++|.....+ .. . ...+.++-+|+ +|..
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~-~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~g 88 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKH-QVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGE 88 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEE-EEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCT
T ss_pred CCcEEEEEEchHHHHHhCCceEE-EEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCC
Confidence 45788888754 32 33 578773 3699999999999887654311 00 0 11233444443 2222
Q ss_pred CCccccCCCCCCCCCCCceEEEEEeCCCCc
Q 033470 67 NKTVGQCKVPFGELPKGTITMHVVVQPPLT 96 (118)
Q Consensus 67 ~~tL~~~~i~~g~~~~~~~t~hlv~~~~~~ 96 (118)
.++.+++|+ .|.++....++
T Consensus 89 ----ldt~L~dGD------eV~iip~vaGG 108 (114)
T 1wgk_A 89 ----LDYQLQDQD------SILFISTLHGG 108 (114)
T ss_dssp ----TTCBCCSSE------EEEEEECSCCC
T ss_pred ----cCcCCCCCC------EEEEeCCCCCC
Confidence 246788898 77777665555
No 127
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.15 E-value=2 Score=27.51 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=48.3
Q ss_pred ceEEEEEEecC------CC-eeeeEEeCCCchHHHHHHHhhccCCCCcccCC-----CCCCceeEEEcCeecCCCCcccc
Q 033470 5 ELVELKFRLYD------GS-DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVP-----KTANDIKLISAGKILENNKTVGQ 72 (118)
Q Consensus 5 ~~i~l~~k~~~------G~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip-----~~~~~qrLIy~Gk~L~D~~tL~~ 72 (118)
..|+|+||.-. |. .. +++++...||.+|.+.+...+| ++...- .-...+.+.-+|+.... +
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~-~~e~~~~~Tv~~Ll~~L~~~~p-~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~ 80 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEE-EIELPEGARVRDLIEEIKKRHE-KFKEEVFGEGYDEDADVNIAVNGRYVSW-----D 80 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEE-EEEECTTCBHHHHHHHHHHHCG-GGGGSCBCSSSCTTSSBEEEETTBCCCT-----T
T ss_pred CcEEEEEEEhHHHHHHhCCCeE-EEECCCCCCHHHHHHHHHhHCh-hHHHHhhccccccCCcEEEEECCEECCC-----C
Confidence 46777777743 43 43 7888888999999999987765 232110 00245678888888764 4
Q ss_pred CCCCCCCCCCCceEEEEE
Q 033470 73 CKVPFGELPKGTITMHVV 90 (118)
Q Consensus 73 ~~i~~g~~~~~~~t~hlv 90 (118)
..+.+|+ .|.++
T Consensus 81 ~~L~dGD------eV~i~ 92 (98)
T 1vjk_A 81 EELKDGD------VVGVF 92 (98)
T ss_dssp CBCCTTC------EEEEE
T ss_pred CCCCCCC------EEEEE
Confidence 5678888 66655
No 128
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=87.35 E-value=3.3 Score=24.92 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=41.8
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCce
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTI 85 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|+|+|.--.++ . +++++...||.+|.+.+. ++ +....+..+|.++..+. .+.+|+
T Consensus 4 ~m~i~vNg~~~~-~-~~~~~~~~tv~~Ll~~l~---------~~--~~~v~vavN~~~v~~~~-----~L~~gD------ 59 (70)
T 1ryj_A 4 GMKFTVITDDGK-K-ILESGAPRRIKDVLGELE---------IP--IETVVVKKNGQIVIDEE-----EIFDGD------ 59 (70)
T ss_dssp CEEEEEEETTEE-E-EEEESSCCBHHHHHHHTT---------CC--TTTEEEEETTEECCTTS-----BCCTTC------
T ss_pred eEEEEEeCccCc-e-eEECCCCCcHHHHHHHhC---------CC--CCCEEEEECCEECCCcc-----cCCCCC------
Confidence 366666443332 2 578888899999999883 12 45667889999987665 567777
Q ss_pred EEEEE
Q 033470 86 TMHVV 90 (118)
Q Consensus 86 t~hlv 90 (118)
.+-++
T Consensus 60 ~V~ii 64 (70)
T 1ryj_A 60 IIEVI 64 (70)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66555
No 129
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=87.34 E-value=3.4 Score=30.31 Aligned_cols=52 Identities=17% Similarity=0.328 Sum_probs=39.6
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCC-ceeE--EE-cCe--ecCC-CCccccCCCCCCC
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTAN-DIKL--IS-AGK--ILEN-NKTVGQCKVPFGE 79 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~-~qrL--Iy-~Gk--~L~D-~~tL~~~~i~~g~ 79 (118)
.+.++..+||.+|++.+.... ++| .+ ..|| +| .++ .|+| +.||+++++..+.
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~-----~i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q 201 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIF-----SIP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQ 201 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHT-----TCC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTC
T ss_pred EEEEcccchHHHHHHHHHHHh-----CCC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCC
Confidence 678899999999999998553 455 44 6888 44 333 5666 5799999999887
No 130
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=83.83 E-value=5.3 Score=24.69 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=41.5
Q ss_pred CeeeeEEeCCCchHHHHHHHhhccCCCCccc-CCCC----CCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEe
Q 033470 17 SDIGPFRYSPTSTVAMLKERIFSDWPKDKKI-VPKT----ANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVV 91 (118)
Q Consensus 17 ~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~-ip~~----~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
... .++++...||.+|.+.+...+| ++.. +-.. ....++.-+|+.... +..+.+|+ .|.+..
T Consensus 18 ~~~-~~~~~~~~Tv~~ll~~L~~~~p-~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gD------eV~i~P 84 (89)
T 3po0_A 18 RTV-RVDVDGDATVGDALDALVGAHP-ALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGD------ELALFP 84 (89)
T ss_dssp SEE-EEECCTTCBHHHHHHHHHHHCG-GGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTC------EEEEEC
T ss_pred CeE-EEECCCCCcHHHHHHHHHHHCc-HHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCC------EEEEEC
Confidence 344 7888888999999999998776 3321 0000 123677788888765 34577788 777654
Q ss_pred C
Q 033470 92 Q 92 (118)
Q Consensus 92 ~ 92 (118)
.
T Consensus 85 p 85 (89)
T 3po0_A 85 P 85 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 131
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=83.08 E-value=7.6 Score=28.92 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=53.5
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE---cCe--ecCCCCccccCCCCCCCC
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS---AGK--ILENNKTVGQCKVPFGEL 80 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy---~Gk--~L~D~~tL~~~~i~~g~~ 80 (118)
+|.++|.+.+| ++ ++.+++++|+.+|=+.|.+.. ++.. .+..=|.| .|. .|+.++.|.+..+..+.
T Consensus 1 ~i~~~V~l~d~-~~-~~~v~~~tt~~el~~~v~~~l-----~L~e-~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~- 71 (294)
T 1ef1_A 1 TISVRVTTMDA-EL-EFAIQPNTTGKQLFDQVVKTI-----GLRE-VWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKES- 71 (294)
T ss_dssp CEEEEEEETTE-EE-EEEECTTCBHHHHHHHHHHHH-----TCCC-GGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCS-
T ss_pred CEEEEEEECCc-eE-EEEECCCCcHHHHHHHHHHHc-----CCCC-cceeEEEEECCCCceeecccccCHHhhccCCCC-
Confidence 47889999999 67 899999999999999888542 2321 34444544 232 57878888776554333
Q ss_pred CCCceEEEEEeCCCCc
Q 033470 81 PKGTITMHVVVQPPLT 96 (118)
Q Consensus 81 ~~~~~t~hlv~~~~~~ 96 (118)
+..+++-++--..
T Consensus 72 ---~~~l~fr~kf~~~ 84 (294)
T 1ef1_A 72 ---PLLFKFRAKFYPE 84 (294)
T ss_dssp ---SEEEEEEESSCCS
T ss_pred ---CEEEEEEEEEECC
Confidence 5567766664443
No 132
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=82.97 E-value=9.1 Score=28.23 Aligned_cols=52 Identities=17% Similarity=0.347 Sum_probs=39.3
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCC-ceeEEE-c-C---eecCC-CCccccCCCCCCC
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTAN-DIKLIS-A-G---KILEN-NKTVGQCKVPFGE 79 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~-~qrLIy-~-G---k~L~D-~~tL~~~~i~~g~ 79 (118)
.+.|+..+||.+|++.+.... .+| .+ ..||-. . . ..|.| +.||+++++..+.
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~-----~i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q 213 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLF-----NIP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQ 213 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHT-----TCC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTE
T ss_pred EEEecccCcHHHHHHHHHHHh-----CCC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCC
Confidence 577899999999999998543 455 44 688843 2 2 35776 5899999999886
No 133
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=82.73 E-value=8.2 Score=29.12 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=54.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEE--cCe--ecCCCCccccCCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLIS--AGK--ILENNKTVGQCKVPFGEL 80 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy--~Gk--~L~D~~tL~~~~i~~g~~ 80 (118)
..+.++|.+.+| ++ .+.+++++|+.+|=+.|.... ++.. .+..=|.| .|. .|+.+++|.+..+..+.
T Consensus 21 ~~~~~~V~lldg-~~-~~~v~~~t~~~el~~~v~~~l-----~L~e-~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~- 91 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EM-EFNCEMKWKGKDLFDLVCRTL-----GLRE-TWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEE- 91 (314)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHH-----TCCC-GGGEEEEEEETTEEEECCTTSBGGGSSCCCSS-
T ss_pred CeeEEEEEeCCc-eE-EEEeCCCCcHHHHHHHHHHHh-----CCCC-CccceEEEEeCCcCeeCCCccCHHHcCCCCCC-
Confidence 568899999999 77 899999999999988887542 3321 34455544 333 58888888886654433
Q ss_pred CCCceEEEEEeCCCC
Q 033470 81 PKGTITMHVVVQPPL 95 (118)
Q Consensus 81 ~~~~~t~hlv~~~~~ 95 (118)
+..+++-++--.
T Consensus 92 ---~~~l~fr~kf~~ 103 (314)
T 1h4r_A 92 ---PVTFHFLAKFYP 103 (314)
T ss_dssp ---SEEEEEEESSCC
T ss_pred ---CEEEEEEEEEec
Confidence 556776655433
No 134
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=82.42 E-value=7.4 Score=24.77 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=19.1
Q ss_pred eEEeC--CCchHHHHHHHhhccCCCC
Q 033470 21 PFRYS--PTSTVAMLKERIFSDWPKD 44 (118)
Q Consensus 21 ~~~v~--~~~TV~~lK~~I~~~wp~~ 44 (118)
+++++ +..||.+|.+.+.++.|..
T Consensus 23 ~~~l~~~~~~Tv~~L~~~L~~~~~~~ 48 (99)
T 2qjl_A 23 KIKMDKEDPVTVGDLIDHIVSTMINN 48 (99)
T ss_dssp EEEECSCSCCBHHHHHHHHHHHTCSS
T ss_pred EEecCCCCCCcHHHHHHHHHHHCchh
Confidence 56666 6789999999999887643
No 135
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=81.85 E-value=3.2 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=30.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhcc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~ 40 (118)
..+-|+|-..+|... .+.|++++|+.++-+.++.+
T Consensus 8 ~k~vvkvf~~Dgssk-si~V~~~~Ta~dv~~~L~~K 42 (100)
T 1wgr_A 8 RPHVVKVYSEDGACR-SVEVAAGATARHVCEMLVQR 42 (100)
T ss_dssp SCEEEEEEETTSCEE-EEEECTTCCHHHHHHHHHCS
T ss_pred CCEEEEEEecCCCEE-EEEECCCCcHHHHHHHHHHH
Confidence 567888888999985 99999999999999999864
No 136
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=81.41 E-value=4.5 Score=25.86 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=37.4
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCe
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGK 62 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk 62 (118)
..+.|++... -++ .+.+.++.+..+|+++|.++.+ +| ++.++|-|.-.
T Consensus 4 ~~~~VKV~~~--~tv-airvp~~~~y~~L~~~l~~kL~-----l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK--YTV-VMKTQPGLPYSQVRDMVSKKLE-----LR--LEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS--SEE-EEEECTTCCHHHHHHHHHHHTT-----CC--GGGCCEEECCT
T ss_pred CcEEEEEEEE--EEE-EEECCCCCCHHHHHHHHHHHhC-----CC--cceeEEEeeCC
Confidence 3466777765 476 8999999999999999997753 34 68888988653
No 137
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=81.14 E-value=2.4 Score=28.52 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=32.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhcc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~ 40 (118)
+.+.|.+.+.+|--+ ++++..+.|+.++|+.++++
T Consensus 18 ~~v~v~~LlPnGi~i-~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 18 PRILVECLLPNGMIV-TLECLREATLITIKHELFKE 52 (108)
T ss_dssp SEEEEEEECTTSCEE-EEEEETTCBHHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEEE-EEEeeccccHHHHHHHHHHH
Confidence 678999999999887 99999999999999999864
No 138
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=80.87 E-value=6.1 Score=25.19 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=35.0
Q ss_pred CCCeeeeEEeCCC-chHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 15 DGSDIGPFRYSPT-STVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 15 ~G~~~~~~~v~~~-~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+|+. ++++.. .||.+|.+.+. ++ +..+.+..+|+++..+ ...+..+.+|+
T Consensus 26 NGe~---~el~~~~~Tv~dLL~~L~---------~~--~~~vaVavNg~iV~~~-~~~~~~L~dGD 76 (87)
T 1tyg_B 26 NGKD---VKWKKDTGTIQDLLASYQ---------LE--NKIVIVERNKEIIGKE-RYHEVELCDRD 76 (87)
T ss_dssp TTEE---ECCSSSCCBHHHHHHHTT---------CT--TSCCEEEETTEEECGG-GTTTSBCCSSS
T ss_pred CCEE---EECCCCCCcHHHHHHHhC---------CC--CCCEEEEECCEECChh-hcCCcCCCCCC
Confidence 7754 577777 89999998883 12 4567788899988543 23345678888
No 139
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.76 E-value=1.3 Score=29.02 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=50.1
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCC
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPF 77 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~ 77 (118)
|.++.|-|.....+.. -+.|+|..+..+|=-.|.++- +.. |.+....|=--++..|+=+++|.+|||.+
T Consensus 8 E~TvRLvVNy~~tQKt-VvRVSP~vpL~ellp~IC~Kc--efd--p~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKT-IVRVSPHASLQELAPIICSKC--EFD--PLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEE-EEEECSSSCTTTHHHHHHHHT--TCC--TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCccee-EEEeCCCCcHHHHHHHHhhcc--cCC--hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 4788999998876665 689999999999998898652 222 32222223334566788899999999984
No 140
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=79.67 E-value=9.9 Score=24.46 Aligned_cols=71 Identities=6% Similarity=0.116 Sum_probs=49.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCee--cCCCCccccCCCCCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKI--LENNKTVGQCKVPFGE 79 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~--L~D~~tL~~~~i~~g~ 79 (118)
+.|.-++-..=...-+-+|.++|+.++-++++..- -+.--.|. +.-+|.-++|+. |.++.|+++.||..-+
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~-VGrrv~p~-pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHC-VNRRVAPR-EGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTT-BTTTBCCC-SSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhh-cceeeCCC-CCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 34444443332223578999999999999998541 01111233 457899999997 9999999999999776
No 141
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=78.46 E-value=4.2 Score=24.55 Aligned_cols=57 Identities=7% Similarity=0.080 Sum_probs=37.5
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCccc-CCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEeC
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKI-VPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVVQ 92 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~-ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
.++ .+..||.+|.+.+....| ++.. ++ .....+..+|+.... +..+.+|+ .|.+...
T Consensus 20 ~~~-~~~~tv~~ll~~L~~~~p-~~~~~l~--~~~~~v~vN~~~v~~-----~~~l~~gD------~V~i~Pp 77 (81)
T 1fm0_D 20 EVA-ADFPTVEALRQHMAAQSD-RWALALE--DGKLLAAVNQTLVSF-----DHPLTDGD------EVAFFPP 77 (81)
T ss_dssp EEC-SCCSBHHHHHHHHHTTCH-HHHHHHC--CTTCEEEETTEECCT-----TCBCCTTC------EEEEECC
T ss_pred EEc-CCCCCHHHHHHHHHHHCh-hHHHHhc--CCCEEEEECCEECCC-----CCCCCCCC------EEEEeCC
Confidence 444 567899999999986654 2221 21 234678888888753 34678888 7877643
No 142
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=77.68 E-value=9.1 Score=22.95 Aligned_cols=69 Identities=9% Similarity=0.115 Sum_probs=42.1
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEE
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITM 87 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
.++||....-.-.++++ ...||.+|.+.+... | ++... ....++.-+|+...+. +..+.+|+ .+
T Consensus 2 ~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~-~-~l~~~---l~~~~vavN~~~v~~~----~~~l~~gD------eV 65 (74)
T 3rpf_C 2 MVEVRFFGPIKEENFFI-KANDLKELRAILQEK-E-GLKEW---LGVCAIALNDHLIDNL----NTPLKDGD------VI 65 (74)
T ss_dssp EEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTC-T-TTTTT---TTTCEEEESSSEECCT----TCCCCTTC------EE
T ss_pred EEEEEEEeecceeEEee-CCCcHHHHHHHHHHC-c-CHHHH---hhccEEEECCEEcCCC----CcCCCCCC------EE
Confidence 45555543321025677 578999999999754 3 22211 2556777788875442 34678888 77
Q ss_pred EEEeC
Q 033470 88 HVVVQ 92 (118)
Q Consensus 88 hlv~~ 92 (118)
.+...
T Consensus 66 ~i~Pp 70 (74)
T 3rpf_C 66 SLLPP 70 (74)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76643
No 143
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.55 E-value=13 Score=31.24 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=55.3
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc---C--eecCCCCccccCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA---G--KILENNKTVGQCKVPFGE 79 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~---G--k~L~D~~tL~~~~i~~g~ 79 (118)
..|.+.|.+.+| ++ .|.|++++|+.+|=..|.... ++.. ....=|.|. | ..|+.+++|.+.++..+.
T Consensus 3 k~i~v~V~llDg-t~-e~~vd~~tt~~ell~~V~~~L-----gL~e-~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~ 74 (575)
T 2i1j_A 3 KSMNVRVTTMDA-EL-EFAIQQTTTGKQLFDQVVKTI-----GLRE-VWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKEN 74 (575)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHH-----TCCC-GGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCS
T ss_pred ceEEEEEEeCCC-eE-EEEECCCCCHHHHHHHHHHHc-----CCCC-ccceeEEEEecCcchhHhhccccHHHhcccCCC
Confidence 468899999999 77 899999999999988887542 3321 344555543 2 367878888776655443
Q ss_pred CCCCceEEEEEeCCCCc
Q 033470 80 LPKGTITMHVVVQPPLT 96 (118)
Q Consensus 80 ~~~~~~t~hlv~~~~~~ 96 (118)
+..+++-++--+.
T Consensus 75 ----~~~L~FRvkfy~~ 87 (575)
T 2i1j_A 75 ----PLQFKFRAKFYPE 87 (575)
T ss_dssp ----SEEEEEEESSCCS
T ss_pred ----CeEEEEEEEEcCC
Confidence 5677776665444
No 144
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=77.40 E-value=13 Score=28.77 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=50.7
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC---------eecCCCCccccCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG---------KILENNKTVGQCKV 75 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G---------k~L~D~~tL~~~~i 75 (118)
..+.++|.+.+|... .+.+++++|+.+|=+.|.... ++. +.+..-|.+.- +.|+-+++|.+.++
T Consensus 84 ~~~~~~V~l~dg~~~-~~~vd~~tt~~el~~~v~~~l-----~L~-e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVK-TIMVDDSKTVTDMLMTICARI-----GIT-NHDEYSLVRELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHHT-----TCS-CGGGEEEECCC----------CCCTTSBTGGGTC
T ss_pred ceeEEEEECcCCCEE-EEEECCCCCHHHHHHHHHHHc-----CCC-CccccEEEEEecccccchHHHHHhcCchhHhhCC
Confidence 357888999999997 999999999999999998653 232 14555565432 35666777766554
Q ss_pred CCCCCCCCceEEEEEeC
Q 033470 76 PFGELPKGTITMHVVVQ 92 (118)
Q Consensus 76 ~~g~~~~~~~t~hlv~~ 92 (118)
... .++++-++
T Consensus 157 ~~~------~~l~frvK 167 (371)
T 3ivf_A 157 EEH------ETLLLRRK 167 (371)
T ss_dssp CTT------CEEEEEEC
T ss_pred CCC------ceEEEEEE
Confidence 322 26666544
No 145
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=76.83 E-value=5.7 Score=23.74 Aligned_cols=51 Identities=12% Similarity=0.270 Sum_probs=36.9
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCCce--eEEEcCeecCCCCccccCCCCCCCCCCCceEEEEE
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDI--KLISAGKILENNKTVGQCKVPFGELPKGTITMHVV 90 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~q--rLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
+++++...||.+|.+.+...+| ++ ..+ .+..+|++...+ ..+.+|+ .+.+.
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~p-~~-------~~v~~~v~vNg~~v~~~-----~~L~~gD------~V~i~ 71 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFERYP-QI-------NNKKFQVAVNEEFVQKS-----DFIQPND------TVALI 71 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHHCG-GG-------TTCCCEEEETTEEECTT-----SEECTTC------EEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHCc-ch-------hcceEEEEECCEECCCC-----CCcCCCC------EEEEE
Confidence 6777788999999999986654 12 223 788889888654 4677788 67655
No 146
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=75.46 E-value=6.3 Score=23.19 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=34.6
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++|+. ++++...||.+|.+.+. .+ ...+.+..+|+++... ...+..+.+|+
T Consensus 5 vNg~~---~~~~~~~tv~~ll~~l~---------~~--~~~v~vavN~~~v~~~-~~~~~~L~~gD 55 (66)
T 1f0z_A 5 FNDQA---MQCAAGQTVHELLEQLD---------QR--QAGAALAINQQIVPRE-QWAQHIVQDGD 55 (66)
T ss_dssp ESSCE---ECCCTTCCHHHHHHHHT---------CC--CSSEEEEETTEEECHH-HHTTCCCCTTE
T ss_pred ECCEE---EEcCCCCcHHHHHHHcC---------CC--CCCEEEEECCEECCch-hcCCcCCCCCC
Confidence 47764 47788899999999883 12 4567788889887532 12234577777
No 147
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=75.12 E-value=25 Score=26.76 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=34.8
Q ss_pred CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC-eecCCCC
Q 033470 15 DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG-KILENNK 68 (118)
Q Consensus 15 ~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G-k~L~D~~ 68 (118)
.......+.+.+..|+.++++.+.+. .+++ ++.|.|+|.| .+.-|..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----t~i~--~~~q~~l~~~~~~~~~~~ 366 (396)
T 4eut_A 319 QQMTAHKIYIHSYNTATIFHELVYKQ-----TKII--SSNQELIYEGRRLVLEPG 366 (396)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHH-----HCCC--STTEEEESSSSEECCCSS
T ss_pred ccceEEEEEcCchhHHHHHHHHHHHh-----cCCC--hhhhHHHhcCCCCCCCCC
Confidence 33333478899999999999999844 4565 7999999999 4444433
No 148
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=74.90 E-value=12 Score=23.14 Aligned_cols=71 Identities=4% Similarity=0.078 Sum_probs=42.5
Q ss_pred CCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCC------CCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEE
Q 033470 15 DGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKT------ANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMH 88 (118)
Q Consensus 15 ~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~------~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~h 88 (118)
.|... +++. +..||.+|.+.+...+|.-...+-.+ ...+++.-+|+...+..-+ +..+.+|+ .|.
T Consensus 15 ~g~~~-~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gD------eV~ 85 (93)
T 3dwg_C 15 TGGQK-SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGD------SVT 85 (93)
T ss_dssp TTTCS-EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTC------EEE
T ss_pred hCCCe-EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCC------EEE
Confidence 34442 5675 45799999999998877311111000 1246777788876543222 35678888 787
Q ss_pred EEeCCC
Q 033470 89 VVVQPP 94 (118)
Q Consensus 89 lv~~~~ 94 (118)
+...-.
T Consensus 86 i~Ppv~ 91 (93)
T 3dwg_C 86 ILPAVA 91 (93)
T ss_dssp EEECCT
T ss_pred EECCCC
Confidence 765443
No 149
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=73.24 E-value=25 Score=32.00 Aligned_cols=80 Identities=10% Similarity=0.252 Sum_probs=56.8
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhcc---CCCCcccCCCCCCceeEEEcCe------ecCCCCccccC
Q 033470 3 EEELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD---WPKDKKIVPKTANDIKLISAGK------ILENNKTVGQC 73 (118)
Q Consensus 3 ~~~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~---wp~~~~~ip~~~~~qrLIy~Gk------~L~D~~tL~~~ 73 (118)
.++.+.|.|.+.+|-.+ ++++..+.|++++|+.|+++ .| ....-.++++-.+.+-.+ +-++.+.|.+.
T Consensus 48 ~~~~v~vd~LLPnGi~i-~~~v~~~~Tl~~iK~~lw~~A~~~p--l~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~ 124 (1092)
T 2y3a_A 48 SDGAISVDFLLPTGIYI-QLEVPREATISYIKQMLWKQVHNYP--MFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDV 124 (1092)
T ss_dssp CCSEEEEEEECTTCCEE-EEEEETTCBHHHHHHHHHHHGGGST--TTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGG
T ss_pred CCCceEEEEECCCceEE-EEEecCcccHHHHHHHHHHHHHhCC--chhccCCcceeEEEEecCCceEEEeecCceeeEee
Confidence 35889999999999988 99999999999999999875 22 111223367777777332 23556788777
Q ss_pred CCCCCCCCCCceEEEEEeC
Q 033470 74 KVPFGELPKGTITMHVVVQ 92 (118)
Q Consensus 74 ~i~~g~~~~~~~t~hlv~~ 92 (118)
..-.+ .+.|+-+
T Consensus 125 ~~~~p-------~l~lve~ 136 (1092)
T 2y3a_A 125 RPFLP-------VLKLVTR 136 (1092)
T ss_dssp CBSSS-------CEEEEES
T ss_pred cccce-------EEEEEec
Confidence 64432 6777766
No 150
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=69.16 E-value=5.1 Score=30.40 Aligned_cols=78 Identities=13% Similarity=-0.018 Sum_probs=51.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc---C--eecCCCCccccCCCCCCC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA---G--KILENNKTVGQCKVPFGE 79 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~---G--k~L~D~~tL~~~~i~~g~ 79 (118)
..+.++|.+.+|... +++|++.+|+.+|=..|.+.. ++. +.+..=|.|. | +.|+.++.|.+... +
T Consensus 16 ~~~~~~V~lldgt~~-~~~vd~~tt~~el~~~v~~~l-----~L~-e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~--~- 85 (296)
T 3qij_A 16 FQGHCKVSLLDDTVY-ECVVEKHAKGQDLLKRVCEHL-----NLL-EEDYFGLAIWDNATSKTWLDSAKEIKKQVR--G- 85 (296)
T ss_dssp -CCEEEEECTTSCEE-EEECCTTCBHHHHHHHHHHHH-----TCS-SGGGEEEEEEEETTEEEECCTTSBHHHHC-----
T ss_pred ceEEEEEEccCCCEE-EEEECCCCCHHHHHHHHHHHc-----CCC-CcceeEEEEEcCCCccchhccchhHHHhcC--C-
Confidence 578999999999997 999999999999999998642 232 1344444432 2 36787887766532 1
Q ss_pred CCCCceEEEEEeCCCC
Q 033470 80 LPKGTITMHVVVQPPL 95 (118)
Q Consensus 80 ~~~~~~t~hlv~~~~~ 95 (118)
.+.++++-++--.
T Consensus 86 ---~~~~l~frvkfy~ 98 (296)
T 3qij_A 86 ---VPWNFTFNVKFYP 98 (296)
T ss_dssp ----CCEEEEEESSCC
T ss_pred ---CCcEEEEEEEEeC
Confidence 1347776666443
No 151
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=68.15 E-value=9.4 Score=23.33 Aligned_cols=64 Identities=9% Similarity=0.132 Sum_probs=39.4
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccC--CCC---CCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEeC
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIV--PKT---ANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVVQ 92 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~i--p~~---~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
+++++...||.+|.+.+....| ++... -.. ...+.+..+|+......- .+..+++|+ .|.++..
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p-~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD------~V~i~pp 86 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYG-SEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDD------KIDLFPP 86 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSC-HHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTC------EEEEECC
T ss_pred EEEcCCCCcHHHHHHHHHHHCc-chhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCC------EEEEeCC
Confidence 5677777899999999987654 11110 000 145678888887752211 234678888 7776643
No 152
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=67.02 E-value=12 Score=22.77 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=38.4
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEeC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVVQ 92 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
++|+. +++ +..||++|-+.+. ++ +..+-+-++|.++.-+ ..++..+++|+ .+-++.-
T Consensus 5 vNG~~---~e~-~~~Tl~~LL~~l~---------~~--~~~vAV~vNg~iVpr~-~~~~~~L~dGD------~veIv~~ 61 (73)
T 2kl0_A 5 INGEQ---REV-QSASVAALMTELD---------CT--GGHFAVALNYDVVPRG-KWDETPVTAGD------EIEILTP 61 (73)
T ss_dssp ETTEE---ECC-CCSBHHHHHHHTT---------CC--SSSCEEEESSSEECHH-HHTTCBCCTTC------EEEEECC
T ss_pred ECCEE---EEc-CCCcHHHHHHHcC---------CC--CCcEEEEECCEECChH-HcCcccCCCCC------EEEEEcc
Confidence 36765 456 6789999988772 22 4566788899988533 23456788888 7776633
No 153
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=63.61 E-value=11 Score=24.31 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=34.7
Q ss_pred EEEEEecCCCeeeeEEeCC-CchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCC
Q 033470 8 ELKFRLYDGSDIGPFRYSP-TSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCK 74 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~-~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~ 74 (118)
.|.+|+.+.+.+..+.|+. ..+|.+||..|.++ ...- ..+.-| .|-|++|=++|.
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~-----~kl~--~~dfDL-----~i~na~T~eeY~ 63 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGR-----EKLK--AADCDL-----QITNAQTKEEYT 63 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHH-----HTCC--TTTEEE-----EEEESSSCCEEC
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHH-----hCCC--CCcccE-----EEeCCCCCCccC
Confidence 3556666776666788864 46999999999864 1111 133444 234667777775
No 154
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=62.84 E-value=20 Score=20.79 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=37.4
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEe
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVV 91 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
++|+. +++ +..||.+|.+.+. .+ ...+.+..+|+++..+ .-.+..+.+|+ .+-++.
T Consensus 4 vNg~~---~~~-~~~tv~~ll~~l~---------~~--~~~v~vavN~~~v~~~-~~~~~~L~dgD------~v~i~~ 59 (64)
T 2cu3_A 4 LNGEP---RPL-EGKTLKEVLEEMG---------VE--LKGVAVLLNEEAFLGL-EVPDRPLRDGD------VVEVVA 59 (64)
T ss_dssp ETTEE---ECC-TTCCHHHHHHHHT---------BC--GGGEEEEETTEEEEGG-GCCCCCCCTTC------EEEEEE
T ss_pred ECCEE---EEc-CCCcHHHHHHHcC---------CC--CCcEEEEECCEECCcc-ccCCcCCCCCC------EEEEEe
Confidence 47755 466 6789999999883 12 4567788899887533 12335678888 666553
No 155
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=62.80 E-value=7 Score=23.80 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=31.1
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++++++..||.+|.+.+. ++ ...+.+..+|++...+ ..+.+|+
T Consensus 24 ~~~~~~~~Tv~dLl~~L~---------~~--~~~v~VavNg~~v~~~-----~~L~dGD 66 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG---------FN--TESAIAKVNGKVVLED-----DEVKDGD 66 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT---------CS--SCSSCEEETTEEECSS-----SCCCSSC
T ss_pred EEECCCCCcHHHHHHHhC---------CC--CcCEEEEECCEECCCC-----CCcCCCC
Confidence 567788899999988873 22 3556788899988665 4566666
No 156
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=58.26 E-value=33 Score=21.89 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=44.1
Q ss_pred eeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcC--eecCCCCccccCCCCCCC
Q 033470 20 GPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAG--KILENNKTVGQCKVPFGE 79 (118)
Q Consensus 20 ~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~G--k~L~D~~tL~~~~i~~g~ 79 (118)
.-+-+|.++|+.++-++++..- -+.--.|.+..-+|.-++| +.|..+.|+++.||..-+
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~Hs-VGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e 75 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHS-INRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTE 75 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTT-BTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred EEEEecCCCcHHHHHHHHhhhh-cceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCce
Confidence 3578899999999999998541 0111123323468888999 999999999999998765
No 157
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=56.72 E-value=25 Score=21.57 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=38.8
Q ss_pred cCCCeeeeEEeC--CCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEe
Q 033470 14 YDGSDIGPFRYS--PTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVV 91 (118)
Q Consensus 14 ~~G~~~~~~~v~--~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (118)
++|+. ++++ ...||.+|-+.+.-.| +..+-+-++|.++.-+ ..++..+++|+ .+-++.
T Consensus 5 vNGe~---~e~~~~~~~Tl~~LL~~l~~~~----------~~~vAVavNg~iVpr~-~~~~~~L~dGD------~IEIv~ 64 (78)
T 2k5p_A 5 VNGKP---STVDGAESLNVTELLSALKVAQ----------AEYVTVELNGEVLERE-AFDATTVKDGD------AVEFLY 64 (78)
T ss_dssp ETTEE---EECSSCSCEEHHHHHHHHTCSC----------TTTCCEEETTEECCTT-HHHHCEECSSB------CEEECC
T ss_pred ECCEE---EEcCCCCCCcHHHHHHHcCCCC----------CCcEEEEECCEECChH-HcCcccCCCCC------EEEEEe
Confidence 36754 5777 7899999988884222 2345577899888554 24455678888 666553
Q ss_pred C
Q 033470 92 Q 92 (118)
Q Consensus 92 ~ 92 (118)
-
T Consensus 65 ~ 65 (78)
T 2k5p_A 65 F 65 (78)
T ss_dssp C
T ss_pred e
Confidence 3
No 158
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=56.40 E-value=15 Score=30.12 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=31.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhcc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~ 40 (118)
..+.+.|.+.+|... .+.+++.+|+.+|-+.|...
T Consensus 215 ~~~~~~V~l~dg~~~-~~~v~~~tt~~el~~~v~~~ 249 (555)
T 3au4_A 215 QEMTSTVYCHGGGSC-KITINSHTTAGEVVEKLIRG 249 (555)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTCBHHHHHHHHHHH
T ss_pred CCcceEEEecCCCeE-EEEeCCCCcHHHHHHHHHHH
Confidence 468899999999996 99999999999999999865
No 159
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=56.32 E-value=13 Score=21.72 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=21.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhh
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIF 38 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~ 38 (118)
|.+++.+.+|+. ++++..+|+.+|-+.+.
T Consensus 1 m~i~i~~p~g~~---~~~~~g~T~~dla~~i~ 29 (73)
T 2kmm_A 1 MEVMVFTPKGEI---KRLPQGATALDFAYSLH 29 (73)
T ss_dssp CCEEEECTTCCE---EEECTTCBHHHHHHHHC
T ss_pred CeEEEEcCCCCE---EEcCCCCcHHHHHHHHh
Confidence 346666677864 57888999999988874
No 160
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=52.96 E-value=9.8 Score=24.87 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=38.7
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcc-cCCC-CCC---ceeEEEcCe--ecCC------CCccccCCCCCCCCCCCceEE
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKK-IVPK-TAN---DIKLISAGK--ILEN------NKTVGQCKVPFGELPKGTITM 87 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~-~ip~-~~~---~qrLIy~Gk--~L~D------~~tL~~~~i~~g~~~~~~~t~ 87 (118)
.++|+++.|..+|-+.+.+. | +.. --|+ +.. .-+=+|.-. .|+. +++|.+.|+.+|. .|
T Consensus 8 ~l~v~~~~TL~~lid~L~~~-p-~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~------ei 79 (98)
T 1y8x_B 8 NIQFSPSAKLQEVLDYLTNS-A-SLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ------EL 79 (98)
T ss_dssp CEECCTTCBHHHHHHHHHHC-T-TCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTC------EE
T ss_pred EEEECCchhHHHHHHHHHhC-h-HhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCC------EE
Confidence 78999999999999999864 2 211 1121 001 024444432 4544 5678999999888 66
Q ss_pred EEE
Q 033470 88 HVV 90 (118)
Q Consensus 88 hlv 90 (118)
|+.
T Consensus 80 ~Vt 82 (98)
T 1y8x_B 80 AVA 82 (98)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 161
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=52.56 E-value=22 Score=22.33 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=24.2
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
..++|+|...+|... .+++++..|+.+.=..
T Consensus 2 ~~~~v~~~~~~g~~~-~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 2 TGIKVFFVTPEGREI-MIEGNEGDSILDLAHA 32 (103)
T ss_dssp CCEEEEEECTTCCEE-EEEECTTCBHHHHHHH
T ss_pred CceEEEEEeCCCCEE-EEEECCCCHHHHHHHH
Confidence 356788887889875 8999999999876433
No 162
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=52.03 E-value=17 Score=23.27 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=23.0
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHH
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKE 35 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~ 35 (118)
+|+|...+|... .+++.+..|+.+.=.
T Consensus 2 ~vt~~~~~G~~~-~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRT-EIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEE-EEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEE-EEEECCCChHHHHHH
Confidence 688999999986 999999999987643
No 163
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=48.36 E-value=23 Score=30.15 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=32.1
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccC
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDW 41 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~w 41 (118)
..+.+.|.+.+|... .++|++.+|+.+|=+.|....
T Consensus 262 ~~i~~~V~llDgt~~-~~~vds~Tt~~ell~~V~~~L 297 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTK-TLLTDSATTARELCNALADKI 297 (655)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTCBHHHHHHHHHHHT
T ss_pred CceEEEEEecCCceE-EEEEccCCcHHHHHHHHHHHc
Confidence 468899999999986 999999999999999998653
No 164
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=47.74 E-value=50 Score=20.78 Aligned_cols=74 Identities=15% Similarity=0.273 Sum_probs=42.2
Q ss_pred EEEEEEecC------CCeeeeEEeCCCchHHHHHHHhhccCCCCccc-C-CCC--CCce-------eEEEcCeecCCCCc
Q 033470 7 VELKFRLYD------GSDIGPFRYSPTSTVAMLKERIFSDWPKDKKI-V-PKT--ANDI-------KLISAGKILENNKT 69 (118)
Q Consensus 7 i~l~~k~~~------G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~-i-p~~--~~~q-------rLIy~Gk~L~D~~t 69 (118)
|+|+|++.. |.. +++++ ..||.+|.+.+...+| ++.. + ... ...+ .+..+|+.......
T Consensus 4 m~v~V~~fa~lr~~~g~~--~~~l~-~~tv~~ll~~L~~~~p-~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTP--ELPLS-GEKVIDVLLSLTDKYP-ALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSS--EEEEE-CSSHHHHHHHHHHHCG-GGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS
T ss_pred eEEEEEEeHHHHHHhCCC--eEEEe-CCcHHHHHHHHHHHCh-hHHHHHhcccccccceeccccccEEEECCEEccccCC
Confidence 456666643 432 45565 6899999999987765 2211 0 000 1124 67778876632211
Q ss_pred cccCCCCCCCCCCCceEEEEEe
Q 033470 70 VGQCKVPFGELPKGTITMHVVV 91 (118)
Q Consensus 70 L~~~~i~~g~~~~~~~t~hlv~ 91 (118)
.+..+.+|+ .|.++.
T Consensus 80 -~~~~L~~gD------~V~i~p 94 (99)
T 2l52_A 80 -LETLLKDSD------EIGILP 94 (99)
T ss_dssp -TTSCCCTTE------EEEEEC
T ss_pred -CCCCCCCCC------EEEEEC
Confidence 234678888 777664
No 165
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=47.74 E-value=31 Score=26.44 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=28.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFS 39 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~ 39 (118)
..+-++|-..+|... .+.|++++|+.+|=+.++.
T Consensus 30 ~k~ivkv~~~D~ss~-~l~V~~~~TA~dv~~~L~~ 63 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSK-TMMVDERQTVRQVLDNLMD 63 (281)
T ss_dssp CEEEEEEEETTSCEE-EEEEETTCBHHHHHHHHHH
T ss_pred ccEEEEEEecCCCEE-EEEECCCCcHHHHHHHHHH
Confidence 456678888899886 9999999999999877764
No 166
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=47.05 E-value=22 Score=25.09 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHH
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKE 35 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~ 35 (118)
.+.|+|. ++|+.+ ++++++.+|+.++=.
T Consensus 3 ~~~i~~~-vNG~~~-~~~v~~~~tLLd~LR 30 (166)
T 1n62_A 3 KAHIELT-INGHPV-EALVEPRTLLIHFIR 30 (166)
T ss_dssp CEEEEEE-ETTEEE-EEEECTTCBHHHHHH
T ss_pred CceEEEE-ECCEEE-EEecCCCCcHHHHHH
Confidence 3455554 489997 999999999987533
No 167
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=47.00 E-value=23 Score=25.00 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHH
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKE 35 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~ 35 (118)
.+.|+|. ++|+.+ ++++++.+|+.++=.
T Consensus 3 ~~~i~~~-vNG~~~-~~~v~~~~tLLd~LR 30 (163)
T 1ffv_A 3 KKIITVN-VNGKAQ-EKAVEPRTLLIHFLR 30 (163)
T ss_dssp CEEEEEE-ETTEEE-EEEECTTCBHHHHHH
T ss_pred CceEEEE-ECCEEE-EEecCCCCcHHHHHH
Confidence 3455554 489997 999999999987533
No 168
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=46.96 E-value=25 Score=21.87 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
.++|+|...+|... .++++++.|+.+.=..
T Consensus 4 ~~~v~~~~~~~~~~-~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 4 VHTITAVTEDGESL-RFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEEEETTTEEE-EEEEESCCTHHHHHHH
T ss_pred cEEEEEEecCCCcE-EEEeCCCChHHHHHHH
Confidence 36677777677775 8999999999876444
No 169
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=46.37 E-value=26 Score=24.69 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHH
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAML 33 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~l 33 (118)
.+.|+|. ++|+.+ +++++|.+|+.++
T Consensus 3 ~~~i~~~-vNG~~~-~v~v~p~~tLLd~ 28 (160)
T 3hrd_D 3 KITINLN-LNGEAR-SIVTEPNKRLLDL 28 (160)
T ss_dssp CEEEEEE-ETTEEE-EEEECSSSBHHHH
T ss_pred cceEEEE-ECCEEE-EEecCCCCCHHHH
Confidence 4566664 589887 8999999999875
No 170
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=46.18 E-value=35 Score=25.67 Aligned_cols=33 Identities=15% Similarity=0.032 Sum_probs=27.4
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhc
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFS 39 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~ 39 (118)
+.-|+|-..+|... .+.|++++|+.+|=+.++.
T Consensus 8 ~~ivkv~~~d~ss~-~l~V~~~mta~ev~~~l~~ 40 (256)
T 3hk0_A 8 KQDVKVFSEDGTSK-VVEILADMTARDLCQLLVY 40 (256)
T ss_dssp CEEEEEEETTSCEE-EEEECTTCBHHHHHHHHHC
T ss_pred ceEEEEEecCCcEE-EEEECCCCCHHHHHHHHHH
Confidence 44566667899886 9999999999999888874
No 171
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=44.63 E-value=17 Score=24.69 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=26.4
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA 60 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~ 60 (118)
++.|-.++|+.+||..|+.. -++| +++|||-..
T Consensus 59 ~~rv~k~~~~~~~~~~va~~-----lg~~--~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQT-----MGFP--QDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHH-----HCCC--GGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHH-----hCCC--cccEEEEEe
Confidence 57777899999999999854 3566 799999654
No 172
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=43.73 E-value=24 Score=30.15 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=39.2
Q ss_pred cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCe-ecCCCCccccCC
Q 033470 14 YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGK-ILENNKTVGQCK 74 (118)
Q Consensus 14 ~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk-~L~D~~tL~~~~ 74 (118)
..++.. .+.+.+++|+.+++..|.+ ..++| ++.|.||+.+. .|+.....+.|.
T Consensus 319 ~~~~~~-~~~i~~~~tl~~l~~~i~~-----~T~i~--~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 319 VSGRVH-TYPVTENENLQNLKSWLQQ-----DTGIP--EEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSSCCC-EEECCTTCCHHHHHHHHHT-----TSCCC--STTCEEESSSSCCCCTTSCGGGSC
T ss_pred cccccc-eeecCCCccHHHHHHHHHH-----HhCCC--HHHHHHHhccCCCCCCCcchhhhe
Confidence 345554 8899999999999999974 45777 78899888766 455565666654
No 173
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=43.56 E-value=22 Score=32.37 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=30.9
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhcc
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~ 40 (118)
.|.|.|.+.+|-.+ +++++.+.|+.++|+.++.+
T Consensus 42 ~i~vd~LLPnGi~i-~l~v~~~~tl~~iK~~lw~~ 75 (1091)
T 3hhm_A 42 RILVECLLPNGMIV-TLECLREATLITIKHELFKE 75 (1091)
T ss_dssp -EEEEEECTTSCEE-EEEEETTCBHHHHHHHHHHH
T ss_pred ceEEEEEcCCCeEE-EEEecCCCcHHHHHHHHHHH
Confidence 38999999999998 99999999999999999864
No 174
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=43.37 E-value=28 Score=22.04 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=23.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHH
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLK 34 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK 34 (118)
.-++|+|...+|+.. .+++.+.+|+.+.=
T Consensus 5 ~m~~V~~~~~~g~~~-~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 5 DKITVHFINRDGETL-TTKGKIGDSLLDVV 33 (108)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTCBHHHHH
T ss_pred ceEEEEEECCCCCEE-EEEECCCChHHHHH
Confidence 346788887789875 89999999998763
No 175
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=41.38 E-value=18 Score=27.51 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=26.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCC--CchHHHHHHHh
Q 033470 5 ELVELKFRLYDGSDIGPFRYSP--TSTVAMLKERI 37 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~--~~TV~~lK~~I 37 (118)
.-++|.|.+.+|..+ .++|+. ++|+.+|-+.+
T Consensus 4 ~~~~i~V~l~dg~~~-~~~i~~~~~tt~~el~e~l 37 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYR-SVELKHGNNTTVQQIMEGM 37 (322)
T ss_dssp -CCEEEEECTTSCEE-EEECTTGGGCCHHHHHTTS
T ss_pred CceEEEEEEECCcEE-EEEEcCCCCCcHHHHHHHh
Confidence 346789999999997 999999 99999996554
No 176
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=40.63 E-value=33 Score=21.79 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=22.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHH
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLK 34 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK 34 (118)
++|+|...+|+.. .+++.++.|+.+.=
T Consensus 6 ~~v~~~~~~g~~~-~~~~~~g~tlL~aa 32 (109)
T 2y5c_A 6 VNVVFVDRSGQRI-PVSGRVGDNVLHLA 32 (109)
T ss_dssp EEEEEECTTSCEE-EEEEETTCBHHHHH
T ss_pred EEEEEEcCCCCEE-EEEECCCCcHHHHH
Confidence 5777877899885 89999999998763
No 177
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=39.11 E-value=1.3e+02 Score=24.65 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=42.8
Q ss_pred ceEEEEEEecCCC--eeeeEEeCCCchHHHHHHHhhccCCCCcccCC-CCCCceeE--EEcCee---cCCCCccccC
Q 033470 5 ELVELKFRLYDGS--DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVP-KTANDIKL--ISAGKI---LENNKTVGQC 73 (118)
Q Consensus 5 ~~i~l~~k~~~G~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip-~~~~~qrL--Iy~Gk~---L~D~~tL~~~ 73 (118)
-.++|++.....+ .+ .+-++.+.||.+|-+.+..+- +++ .+...+|| ||+||+ +.++.+|+..
T Consensus 338 r~~kv~w~~~~~~~~~~-~l~vpK~gtV~Dll~~l~k~~-----~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 338 RSFKCIWLNSQFREEEI-TLYPDKHGCVRDLLEECKKAV-----ELGEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp CCEEEEEECTTSCEEEE-EECCBTTCBHHHHHHHHHTTC-----CCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred ceEEEEEECCCCceEEE-EEEcCCCCCHHHHHHHHHHhc-----CCCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 4567766643332 32 677788999999999997542 122 23578888 699984 6788888654
No 178
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=37.92 E-value=37 Score=21.35 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=21.0
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHH
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLK 34 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK 34 (118)
+|+|...+|... .+++.+.+|+.+.=
T Consensus 2 ~v~~~~~~g~~~-~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 2 KIIFIEHNGTRH-EVEAKPGLTVMEAA 27 (106)
T ss_dssp EEEEECTTCCEE-EEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHHH
Confidence 577777889775 89999999998763
No 179
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=37.05 E-value=40 Score=21.17 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=21.4
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHH
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKE 35 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~ 35 (118)
+|+|...+|... .+++.+++|+.+.=.
T Consensus 2 ~V~~~~~~g~~~-~~~~~~g~tlLeaa~ 28 (106)
T 1xlq_A 2 KVVYVSHDGTRR-ELDVADGVSLMQAAV 28 (106)
T ss_dssp EEEEECTTSCEE-EEECCTTCBHHHHHH
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHHHH
Confidence 567777889775 899999999987643
No 180
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=36.39 E-value=26 Score=23.65 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=40.2
Q ss_pred CceEEEEEEecCCC----eeeeEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEcCeecCCCCccccCCCCCCC
Q 033470 4 EELVELKFRLYDGS----DIGPFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISAGKILENNKTVGQCKVPFGE 79 (118)
Q Consensus 4 ~~~i~l~~k~~~G~----~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++-|.|.|+....+ .+ ++.++.+. -++ . .+|--+||-+.|++.+|+..=++|.+..|.
T Consensus 26 defv~I~I~~p~ir~~a~~~-ei~vd~~~-------F~F-------~---~~PYyLRL~lP~~vved~~~~A~YD~d~g~ 87 (115)
T 3eud_A 26 EEFIFLKIFISNIRFSAVGL-EIIIQENM-------IIF-------H---LSPYYLRLRFPHELIDDERSTAQYDSKDEC 87 (115)
T ss_dssp SSEEEEEEECCSCCCCSSSC-EEEEETTE-------EEE-------E---ETTEEEEEECSSCEECSTTCEEEEETTTTE
T ss_pred CCEEEEEEEcCceecccCcc-EEEEeCCE-------EEE-------e---cCCeEEEEecCcceecCCCcceEEeCCCcE
Confidence 56788888877554 33 55555441 111 1 226889999999999999988899888773
No 181
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=35.42 E-value=56 Score=21.74 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=23.7
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHH
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLK 34 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK 34 (118)
.-.+|+|...+|... .+++.+..|+.+.=
T Consensus 20 ~M~~Vt~~~~~G~~~-~v~~~~G~tLL~aa 48 (126)
T 3hui_A 20 HMAKINFVDHTGETR-TVEVEEGATVMEAA 48 (126)
T ss_dssp SEEEEEEECTTSCEE-EEEEETTSBHHHHH
T ss_pred CceEEEEEeCCCCEE-EEEECCCCcHHHHH
Confidence 446888888899885 89999999998763
No 182
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=35.26 E-value=45 Score=21.48 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=27.5
Q ss_pred ceEEEEEEecCCCee---eeEEeCCCchHHHHHHHhhcc
Q 033470 5 ELVELKFRLYDGSDI---GPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~---~~~~v~~~~TV~~lK~~I~~~ 40 (118)
+.|.|.|+-.++-.. ..+.|+.+.||+++-..|+..
T Consensus 12 ~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkr 50 (96)
T 1wz3_A 12 QKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQ 50 (96)
T ss_dssp CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHH
T ss_pred CeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHh
Confidence 488999988754211 358999999999998888755
No 183
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=34.80 E-value=47 Score=22.77 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=35.4
Q ss_pred eEEeCC----CchHHHHHHHhhccCCCCcccCCCC-CCceeEEEcCeecCC-CCccccCCCCCCC
Q 033470 21 PFRYSP----TSTVAMLKERIFSDWPKDKKIVPKT-ANDIKLISAGKILEN-NKTVGQCKVPFGE 79 (118)
Q Consensus 21 ~~~v~~----~~TV~~lK~~I~~~wp~~~~~ip~~-~~~qrLIy~Gk~L~D-~~tL~~~~i~~g~ 79 (118)
.+.+++ ..|..+|-+.|..+..-+. .+... .+.+||||-=-+=++ +++|++.|+..|+
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gs 72 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGS 72 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTC
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCc
Confidence 466664 2466666665654332111 12211 346889987766544 7899999999987
No 184
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=34.28 E-value=49 Score=23.01 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
+.+.|.|. ++|+.+ ++++++++|+.++=..
T Consensus 8 ~~m~i~~~-ing~~~-~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 8 QLMRISAT-INGKPR-VFYVEPRMHLADALRE 37 (168)
T ss_dssp CCEEEEEE-ETTEEE-EEEECTTSBHHHHHHH
T ss_pred CcceEEEE-ECCEEE-EEecCCCCcHHHHHHh
Confidence 45666665 489887 8899999999875443
No 185
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=33.66 E-value=53 Score=19.99 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=20.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
.+|+|...+| .. ++++++++|+.+.=..
T Consensus 2 ~~v~~~~~~g-~~-~~~~~~g~tlL~a~~~ 29 (95)
T 1frr_A 2 YKTVLKTPSG-EF-TLDVPEGTTILDAAEE 29 (95)
T ss_dssp EEEEEEETTE-EE-EEEECTTCCHHHHHHH
T ss_pred eEEEEEeCCC-cE-EEEeCCCCcHHHHHHH
Confidence 3577776777 54 7899999999876443
No 186
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=33.09 E-value=55 Score=23.71 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=26.9
Q ss_pred eEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhcc
Q 033470 6 LVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 6 ~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~ 40 (118)
.+.|+|-..+|... .+.|++++|+.+|-+.|..+
T Consensus 34 k~~v~v~~~d~~~k-~i~v~~~~ta~ev~~~L~~k 67 (291)
T 3tca_A 34 KLVVKVHMDDSSTK-SLMVDERQLARDVLDNLFEK 67 (291)
T ss_dssp EEEEEEECTTSCEE-EEEEETTCBHHHHHHHHHHH
T ss_pred ceEEEEEcCCCceE-EEEeCCCCcHHHHHHHHHHH
Confidence 34556666788875 99999999999999888754
No 187
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=28.92 E-value=59 Score=22.59 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=20.0
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
.|+|. ++|+.+ ++++++.+|+.++=..
T Consensus 4 ~i~~~-vNG~~~-~v~~~~~~tLL~~Lr~ 30 (161)
T 1rm6_C 4 ILRLT-LNGRAR-EDLVPDNMLLLDYLRE 30 (161)
T ss_dssp EEEEE-ETTEEE-EEEEETTCBHHHHHHH
T ss_pred eEEEE-ECCEEE-EEecCCcCcHHHHHHH
Confidence 34443 499997 8999999999876444
No 188
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=28.13 E-value=1.4e+02 Score=20.81 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=42.1
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccC-CCC---CCceeEEEcCeecCCCCccccCCCCCCCCCCCceEEEEEeCCCCc
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIV-PKT---ANDIKLISAGKILENNKTVGQCKVPFGELPKGTITMHVVVQPPLT 96 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~i-p~~---~~~qrLIy~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~~~~ 96 (118)
+++++. .||.+|.+.+....| ++... -.. ...+.+..+|++.....- .+..+++|+ .|.++..-.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p-~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGD------eVai~PpVsGG 87 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYP-ALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGA------TLDLFPPVAGG 87 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCG-GGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTC------EEEEECSCCSE
T ss_pred eEEECC-CcHHHHHHHHHhhCh-hhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCC------EEEEECccccc
Confidence 567776 899999999987765 22210 000 134677888888765322 234688898 78777555444
No 189
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=27.70 E-value=77 Score=19.40 Aligned_cols=28 Identities=21% Similarity=0.042 Sum_probs=22.9
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHHHhh
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKERIF 38 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~ 38 (118)
+|++.+.+|.. ++++.+.|+.++-..|.
T Consensus 7 ~i~v~tP~G~~---~~lp~GaT~~D~A~~Ih 34 (78)
T 3hvz_A 7 EVFVFTPKGDV---ISLPIGSTVIDFAYAIH 34 (78)
T ss_dssp EEEEECTTSCE---EEEETTCBHHHHHHHHC
T ss_pred eEEEECCCCCE---EEecCCCCHHHHHHHhh
Confidence 47777889954 58899999999988885
No 190
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=26.14 E-value=1.1e+02 Score=19.57 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=26.1
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCchHHHHHHHhhcc
Q 033470 5 ELVELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSD 40 (118)
Q Consensus 5 ~~i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~ 40 (118)
..|+|+|-.-+ --| .+.++++.+..+||.+|...
T Consensus 11 ~~~KVK~yy~D-DIi-AIrvP~di~~~~L~dKi~~R 44 (85)
T 1ip9_A 11 KTTKIKFYYKD-DIF-ALMLKGDTTYKELRSKIAPR 44 (85)
T ss_dssp CCEEEEECBTT-CCE-EEEECSCCCHHHHHHHHHHH
T ss_pred CceEEEEEecC-cEE-EEECCCCCCHHHHHHHHHHH
Confidence 55666665543 344 89999999999999999854
No 191
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=25.79 E-value=34 Score=21.51 Aligned_cols=26 Identities=4% Similarity=0.010 Sum_probs=20.3
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHH
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLK 34 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK 34 (118)
+|+|...+|... .+++.+..|+.+.=
T Consensus 2 ~V~~~~~~g~~~-~~~~~~g~tlL~aa 27 (105)
T 1b9r_A 2 RVVFIDEQSGEY-AVDAQDGQSLMEVA 27 (105)
T ss_dssp EEEECCTTTSCE-EEECCTTCCTTHHH
T ss_pred EEEEEeCCCCEE-EEEECCCChHHHHH
Confidence 567766788775 88999999998753
No 192
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=25.69 E-value=71 Score=19.52 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=19.8
Q ss_pred EEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 8 ELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 8 ~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
+|+|...+| .. .+++++.+|+.+.=..
T Consensus 2 ~v~~~~~~g-~~-~~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 2 KVTLKTPSG-EE-TIECPEDTYILDAAEE 28 (94)
T ss_dssp EEEEEETTE-EE-EEECCTTSCHHHHHHH
T ss_pred EEEEEeCCC-cE-EEEECCCCcHHHHHHH
Confidence 466766666 54 7899999999886444
No 193
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=25.68 E-value=1.3e+02 Score=19.59 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=26.7
Q ss_pred ceEEEEEEecC-------CCeeeeEEeCCCchHHHHHHHhhccC
Q 033470 5 ELVELKFRLYD-------GSDIGPFRYSPTSTVAMLKERIFSDW 41 (118)
Q Consensus 5 ~~i~l~~k~~~-------G~~~~~~~v~~~~TV~~lK~~I~~~w 41 (118)
++|+|++..-+ +..+ .+-|+++.+-.+|..+|.++.
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~-~i~V~~~i~f~~L~~kI~~Kl 46 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIF-TLLVEKVWNFDDLIMAINSKI 46 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEE-EEEECTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEE-EEEecCCCCHHHHHHHHHHHH
Confidence 45666666542 3344 899999999999999998654
No 194
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=24.23 E-value=1.8e+02 Score=26.42 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=47.3
Q ss_pred ceEEEEEEecC-CCeeeeEEeCCCchHHHHHHHhhccCCCCcccCC-CCCCceeEEEcCe--ecCCCCccccCC
Q 033470 5 ELVELKFRLYD-GSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIVP-KTANDIKLISAGK--ILENNKTVGQCK 74 (118)
Q Consensus 5 ~~i~l~~k~~~-G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~ip-~~~~~qrLIy~Gk--~L~D~~tL~~~~ 74 (118)
..+.|.++..+ +.++ ++.+++++|+.+|-+.+..++..-..... ..+++--|--.|+ .|-.+-.|.++.
T Consensus 217 ~~~~i~v~~~~~~~~~-t~~v~~~~tp~~li~~~~~k~~~~~~~~~~~~~~dyvLkv~G~~eyl~g~~~L~~f~ 289 (1092)
T 2y3a_A 217 GKLVVAVHFENSQDVF-SFQVSPNLNPIKINELAIQKRLTIRGKEDEASPCDYVLQVSGRVEYVFGDHPLIQFQ 289 (1092)
T ss_dssp SCEEEEEEETTCSCCE-EEEECTTSCTHHHHHHHHCCCCC-------CCGGGEEEEETTBSCEECSSSCGGGBH
T ss_pred CcEEEEEEEecCCceE-EEEecCCCCHHHHHHHHHHHHHHhcCCCccCChhheEEEeccceeEEeCCcceehhH
Confidence 45677777654 4455 99999999999999999987743211111 1366788888898 466668887774
No 195
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=23.57 E-value=1e+02 Score=18.75 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=23.4
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhhccCCC
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIFSDWPK 43 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~ 43 (118)
.+|+|...+| .. .+++++.+|+.+.=..-- .+|.
T Consensus 2 ~~V~~~~~~~-~~-~~~~~~g~tlL~a~~~~g-~i~~ 35 (93)
T 1wri_A 2 YKVTLKTPDG-DI-TFDVEPGERLIDIGSEKA-DLPL 35 (93)
T ss_dssp EEEEEEETTE-EE-EEEECTTSCHHHHHHHHS-CCCC
T ss_pred EEEEEEECCC-eE-EEEECCCCcHHHHHHHCc-CCCC
Confidence 3567766666 54 789999999998765553 4443
No 196
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=23.09 E-value=1.6e+02 Score=19.08 Aligned_cols=38 Identities=5% Similarity=0.187 Sum_probs=25.8
Q ss_pred EEEEEEecC------CCeeeeEEeCC----CchHHHHHHHhhccCCCCc
Q 033470 7 VELKFRLYD------GSDIGPFRYSP----TSTVAMLKERIFSDWPKDK 45 (118)
Q Consensus 7 i~l~~k~~~------G~~~~~~~v~~----~~TV~~lK~~I~~~wp~~~ 45 (118)
|+|++++.. |+.. .++++. ..||.+|=..|.+++|.+.
T Consensus 5 m~v~V~f~g~l~~l~g~~~-~v~l~~~~g~~~TV~dLl~~L~~~~~~~r 52 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQT-SLQLDGVVPTGTNLNGLVQLLKTNYVKER 52 (110)
T ss_dssp SCCEEEEESSCGGGTTSCS-EECCCCSCGGGCCHHHHHHHHTTTTCCSC
T ss_pred cEEEEEEEecHHHHhCCeE-EEEeCCcCCCCccHHHHHHHHHHHccccc
Confidence 555555543 4554 677774 2499999999998887653
No 197
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=22.99 E-value=1.4e+02 Score=23.60 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=38.4
Q ss_pred EEEEEe------cCCCeeeeEEeCCCchHHHHHHHhhccCCCCcccC-CCCCCceeE--EE--cC--eecCCCCcccc
Q 033470 8 ELKFRL------YDGSDIGPFRYSPTSTVAMLKERIFSDWPKDKKIV-PKTANDIKL--IS--AG--KILENNKTVGQ 72 (118)
Q Consensus 8 ~l~~k~------~~G~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~i-p~~~~~qrL--Iy--~G--k~L~D~~tL~~ 72 (118)
-|+|+. .+|+. +.+.+++++||.+|=..|.+. ...++ +..++..=| .+ .| +.|+.+++|.+
T Consensus 23 ~~~~~~~~~~~~~~~~~-k~v~~d~~ttV~dVi~~i~~~---~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 96 (392)
T 4eku_A 23 ILKVCFYSNSFNPGKNF-KLVKCTVQTEIREIITSILLS---GRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGE 96 (392)
T ss_dssp EEEEEECCSSSCGGGEE-EEEEEETTCBHHHHHHHHHHT---TTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred eEEEEecccccCCCCCe-EEEEeCCCCcHHHHHHHHHHH---hhcCCCcCccceEEEEEEECCCCceEECCCCCcHHH
Confidence 355666 67766 499999999999999988731 01111 112344433 33 22 57888888865
No 198
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.43 E-value=90 Score=21.01 Aligned_cols=32 Identities=3% Similarity=0.157 Sum_probs=21.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHHhh
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKERIF 38 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~I~ 38 (118)
|+|.+-..+|+.++.+.+...+....|-.+..
T Consensus 31 IRVs~d~~~gn~YKSIlltsqDktp~VI~raL 62 (115)
T 1rax_A 31 IRVSLDVDNGNMYKSILVTSQDKAPAVIRKAM 62 (115)
T ss_dssp EEEEESSSSCCCCEEEEEETTCCHHHHHHHHH
T ss_pred EEEEEecCCCcEEEEEEEecCCCcHHHHHHHH
Confidence 45555556788778899988887766544443
No 199
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=22.30 E-value=19 Score=24.07 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCchHHHH
Q 033470 4 EELVELKFRLYDGSDIGPFRYSPTSTVAML 33 (118)
Q Consensus 4 ~~~i~l~~k~~~G~~~~~~~v~~~~TV~~l 33 (118)
+..++|+|...+|... .+++.+..|+.++
T Consensus 3 ~~~v~Vtf~~~~G~~~-~v~~~~G~tLl~a 31 (123)
T 3n9z_C 3 EDKITVHFINRDGETL-TTKGKVGDSLLDV 31 (123)
T ss_dssp ------------------------------
T ss_pred CCcEEEEEEeCCCCEE-EEEECCCCcHHHH
Confidence 4567888988899875 8899999988865
No 200
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=21.81 E-value=58 Score=26.86 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=26.2
Q ss_pred eEEeCCCchHHHHHHHhhccCCCCcccCCCCCCceeEEEc
Q 033470 21 PFRYSPTSTVAMLKERIFSDWPKDKKIVPKTANDIKLISA 60 (118)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~wp~~~~~ip~~~~~qrLIy~ 60 (118)
.+.+..++|+.+||+.|++. -++| +++|||-..
T Consensus 39 ~~rv~k~~~~~~l~~~va~~-----lg~~--~~~~RlW~~ 71 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQT-----MGFP--QDQIRLWPM 71 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHH-----HTSC--GGGEEEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHH-----hCcC--cccEEEEEE
Confidence 57778899999999999854 3566 799999543
No 201
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=21.57 E-value=1.4e+02 Score=18.18 Aligned_cols=29 Identities=3% Similarity=-0.068 Sum_probs=20.2
Q ss_pred EEEEEEecCCC-eeeeEEeCCCchHHHHHHH
Q 033470 7 VELKFRLYDGS-DIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 7 i~l~~k~~~G~-~~~~~~v~~~~TV~~lK~~ 36 (118)
.+|+|...+|. .. .++++++.|+.+.=..
T Consensus 3 ~~V~~~~~~~~~~~-~~~~~~g~tlL~a~~~ 32 (98)
T 1czp_A 3 FKVTLINEAEGTKH-EIEVPDDEYILDAAEE 32 (98)
T ss_dssp EEEEEEETTTTEEE-EEEEETTSCHHHHHHH
T ss_pred eEEEEEeCCCCCcE-EEEeCCCCCHHHHHHH
Confidence 46666665553 44 7899999999886444
No 202
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=21.26 E-value=1.1e+02 Score=18.74 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=19.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
.+|+|...+| .. .+++++..|+.+.=..
T Consensus 3 ~~v~~~~~~~-~~-~~~~~~g~tlL~a~~~ 30 (97)
T 1a70_A 3 YKVTLVTPTG-NV-EFQCPDDVYILDAAEE 30 (97)
T ss_dssp EEEEEEETTE-EE-EEEEETTSCHHHHHHH
T ss_pred EEEEEEeCCc-eE-EEEeCCCCcHHHHHHH
Confidence 4566665566 54 7899999999876444
No 203
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=20.03 E-value=1.2e+02 Score=18.58 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=19.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCchHHHHHHH
Q 033470 7 VELKFRLYDGSDIGPFRYSPTSTVAMLKER 36 (118)
Q Consensus 7 i~l~~k~~~G~~~~~~~v~~~~TV~~lK~~ 36 (118)
.+|+|...+| .. .++++++.|+.+.=..
T Consensus 3 ~~v~~~~~~~-~~-~~~~~~g~tlL~a~~~ 30 (98)
T 1iue_A 3 YNITLRTNDG-EK-KIECNEDEYILDASER 30 (98)
T ss_dssp EEEEEEETTE-EE-EEEEETTSCHHHHHHH
T ss_pred EEEEEEeCCC-eE-EEEeCCCCcHHHHHHH
Confidence 4566665555 54 7899999999876444
Done!