Query 033473
Match_columns 118
No_of_seqs 131 out of 1023
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:36:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 2.9E-37 9.8E-42 216.1 13.4 113 4-118 14-126 (126)
2 2gow_A HCG-1 protein, ubiquiti 100.0 1.8E-30 6.1E-35 181.4 12.2 109 4-118 15-125 (125)
3 1wgh_A Ubiquitin-like 3, HCG-1 99.9 5.3E-26 1.8E-30 156.9 13.2 92 4-100 14-106 (116)
4 1wgd_A Homocysteine-responsive 99.8 3.5E-19 1.2E-23 116.9 9.4 84 3-97 4-90 (93)
5 4dwf_A HLA-B-associated transc 99.8 9.9E-19 3.4E-23 113.5 11.0 79 3-98 2-82 (90)
6 4eew_A Large proline-rich prot 99.8 8.1E-19 2.8E-23 113.5 10.4 72 4-92 15-88 (88)
7 3phx_B Ubiquitin-like protein 99.8 8.9E-19 3E-23 111.1 9.9 73 6-94 4-78 (79)
8 2faz_A Ubiquitin-like containi 99.8 1.4E-18 4.6E-23 109.9 10.1 73 7-94 3-78 (78)
9 3u5c_f 40S ribosomal protein S 99.8 2.1E-20 7E-25 134.1 1.2 90 8-111 2-91 (152)
10 3plu_A Ubiquitin-like modifier 99.8 1.3E-18 4.3E-23 115.8 9.2 73 4-90 19-91 (93)
11 2kdb_A Homocysteine-responsive 99.8 7E-19 2.4E-23 117.9 7.5 76 4-90 21-99 (99)
12 2uyz_B Small ubiquitin-related 99.8 1.9E-18 6.4E-23 109.6 9.0 75 5-95 2-78 (79)
13 4fbj_B NEDD8; effector-HOST ta 99.8 1.8E-18 6.2E-23 112.6 9.1 76 8-99 2-79 (88)
14 2daf_A FLJ35834 protein; hypot 99.8 1.2E-18 4.1E-23 120.2 8.3 80 4-98 13-94 (118)
15 1uh6_A Ubiquitin-like 5; beta- 99.8 1.6E-18 5.5E-23 116.7 8.7 72 4-91 26-99 (100)
16 2wyq_A HHR23A, UV excision rep 99.8 3.2E-18 1.1E-22 109.6 9.7 81 5-96 4-84 (85)
17 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 5.6E-18 1.9E-22 109.1 10.4 80 3-96 4-83 (87)
18 1wy8_A NP95-like ring finger p 99.8 4.5E-18 1.5E-22 110.1 10.0 81 4-97 5-86 (89)
19 4hcn_B Polyubiquitin, ubiquiti 99.8 3.8E-18 1.3E-22 113.1 9.7 76 4-95 20-97 (98)
20 3dbh_I NEDD8; cell cycle, acti 99.8 2.7E-18 9.4E-23 110.4 8.8 76 4-95 10-87 (88)
21 3v6c_B Ubiquitin; structural g 99.8 4.3E-18 1.5E-22 111.1 9.8 74 4-93 15-90 (91)
22 2dzi_A Ubiquitin-like protein 99.8 3.8E-18 1.3E-22 108.1 9.0 78 3-94 4-81 (81)
23 1wju_A NEDD8 ultimate buster-1 99.8 3.6E-18 1.2E-22 115.0 9.2 74 7-95 16-93 (100)
24 2kan_A Uncharacterized protein 99.8 6.2E-18 2.1E-22 111.8 10.1 78 5-97 14-92 (94)
25 4a20_A Ubiquitin-like protein 99.8 4.8E-18 1.6E-22 113.7 9.5 78 4-94 17-97 (98)
26 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 6.4E-18 2.2E-22 110.7 9.7 78 7-100 2-81 (96)
27 2lxa_A Ubiquitin-like protein 99.8 1.6E-18 5.6E-23 113.7 6.7 76 7-96 2-81 (87)
28 2hj8_A Interferon-induced 17 k 99.7 3.2E-18 1.1E-22 111.3 7.4 78 6-97 4-81 (88)
29 2kk8_A Uncharacterized protein 99.7 4.6E-18 1.6E-22 110.3 8.0 72 6-93 10-84 (84)
30 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.1E-17 3.7E-22 106.7 9.5 76 5-96 2-79 (85)
31 3n3k_B Ubiquitin; hydrolase, p 99.7 7.3E-18 2.5E-22 107.6 8.5 75 6-96 3-79 (85)
32 2bwf_A Ubiquitin-like protein 99.7 1.5E-17 5.1E-22 104.4 9.8 71 6-93 4-76 (77)
33 1ndd_A NEDD8, protein (ubiquit 99.7 1.3E-17 4.6E-22 103.9 9.5 72 8-95 2-75 (76)
34 1wia_A Hypothetical ubiquitin- 99.7 1.8E-17 6.3E-22 108.9 10.1 79 2-97 3-82 (95)
35 1yqb_A Ubiquilin 3; structural 99.7 9.9E-18 3.4E-22 111.9 9.0 77 4-97 20-98 (100)
36 3m62_B UV excision repair prot 99.7 6E-18 2E-22 114.0 7.9 76 7-96 2-77 (106)
37 1wyw_B Ubiquitin-like protein 99.7 9.4E-18 3.2E-22 111.2 8.5 75 5-95 20-96 (97)
38 3a9j_A Ubiquitin; protein comp 99.7 2.4E-17 8.2E-22 102.7 9.8 72 8-95 2-75 (76)
39 1uel_A HHR23B, UV excision rep 99.7 2.1E-17 7.1E-22 108.9 9.8 78 8-96 2-79 (95)
40 3vdz_A Ubiquitin-40S ribosomal 99.7 2.4E-17 8.2E-22 111.8 9.8 75 5-95 34-110 (111)
41 1sif_A Ubiquitin; hydrophobic 99.7 2E-17 6.7E-22 107.7 8.6 75 6-96 9-85 (88)
42 1wx8_A Riken cDNA 4931431F19; 99.7 1E-17 3.4E-22 110.2 7.3 78 4-96 15-92 (96)
43 4ajy_B Transcription elongatio 99.7 4.3E-17 1.5E-21 112.6 10.6 77 6-93 2-81 (118)
44 1j8c_A Ubiquitin-like protein 99.7 5.3E-17 1.8E-21 112.6 10.9 78 4-98 30-109 (125)
45 2klc_A Ubiquilin-1; ubiquitin- 99.7 4.5E-17 1.5E-21 108.8 10.0 76 4-96 23-100 (101)
46 1wx7_A Ubiquilin 3; ubiquitin- 99.7 6.5E-17 2.2E-21 108.5 10.7 78 4-98 15-94 (106)
47 1v2y_A 3300001G02RIK protein; 99.7 1.5E-17 5.3E-22 112.7 7.6 86 4-96 5-99 (105)
48 1we7_A SF3A1 protein; structur 99.7 3.5E-17 1.2E-21 111.5 9.2 81 5-99 24-114 (115)
49 1ttn_A DC-UBP, dendritic cell- 99.7 4.4E-17 1.5E-21 109.5 9.1 78 5-96 22-99 (106)
50 2fnj_B Transcription elongatio 99.7 3E-17 1E-21 113.4 8.2 77 7-92 3-80 (118)
51 1yx5_B Ubiquitin; proteasome, 99.7 1.3E-16 4.4E-21 105.3 9.8 77 8-98 2-78 (98)
52 1we6_A Splicing factor, putati 99.7 6.9E-17 2.4E-21 109.2 8.5 79 5-97 26-108 (111)
53 3m63_B Ubiquitin domain-contai 99.7 2.4E-17 8.3E-22 110.3 6.2 72 5-93 27-100 (101)
54 2l7r_A Ubiquitin-like protein 99.7 5.3E-17 1.8E-21 106.8 7.6 73 5-95 18-92 (93)
55 1v5o_A 1700011N24RIK protein; 99.7 1.1E-16 3.9E-21 106.8 9.2 81 5-98 6-90 (102)
56 2kdi_A Ubiquitin, vacuolar pro 99.7 1.6E-16 5.5E-21 108.3 9.9 76 6-97 9-86 (114)
57 3rt3_B Ubiquitin-like protein 99.7 1.5E-16 5E-21 112.7 10.0 76 6-97 81-158 (159)
58 2ojr_A Ubiquitin; lanthide-bin 99.7 2.5E-16 8.4E-21 106.6 10.2 75 5-95 34-110 (111)
59 3l0w_B Monoubiquitinated proli 99.7 1.9E-16 6.5E-21 114.7 9.9 78 8-99 2-79 (169)
60 1x1m_A Ubiquitin-like protein 99.7 1.7E-16 5.7E-21 106.9 8.6 80 5-96 11-103 (107)
61 1wgg_A Ubiquitin carboxyl-term 99.7 1.9E-16 6.4E-21 105.0 8.3 75 4-94 5-80 (96)
62 3b1l_X E3 ubiquitin-protein li 99.5 5.8E-18 2E-22 106.3 0.0 74 8-95 2-75 (76)
63 1wxv_A BAG-family molecular ch 99.7 5.9E-16 2E-20 101.0 9.1 78 4-96 5-88 (92)
64 2kd0_A LRR repeats and ubiquit 99.6 9.5E-16 3.2E-20 99.3 9.3 65 13-93 18-84 (85)
65 3q3f_A Ribonuclease/ubiquitin 99.6 5E-16 1.7E-20 114.8 8.5 76 6-97 105-182 (189)
66 3u30_A Ubiquitin, linear DI-ub 99.6 1.5E-15 5E-20 109.2 10.4 77 4-96 18-96 (172)
67 4b6w_A Tubulin-specific chaper 99.6 1.5E-15 5.1E-20 99.2 9.4 76 6-94 2-85 (86)
68 1v5t_A 8430435I17RIK protein; 99.6 7.9E-16 2.7E-20 100.6 8.0 76 4-94 5-84 (90)
69 4dbg_A Ranbp-type and C3HC4-ty 99.6 1.8E-15 6.2E-20 102.5 10.0 73 7-94 25-101 (105)
70 2xzm_9 RPS31E; ribosome, trans 99.6 4.2E-17 1.4E-21 120.6 1.4 83 8-109 2-84 (189)
71 3b08_A Polyubiquitin-C, ubiqui 99.6 3E-15 1E-19 104.2 10.2 74 7-96 77-152 (152)
72 3rt3_B Ubiquitin-like protein 99.6 2.7E-15 9.1E-20 106.2 9.5 71 7-93 3-77 (159)
73 3u5e_m 60S ribosomal protein L 99.6 4.7E-17 1.6E-21 112.8 0.1 77 8-98 2-78 (128)
74 3u30_A Ubiquitin, linear DI-ub 99.6 2.1E-15 7.1E-20 108.4 8.1 73 7-95 97-171 (172)
75 1v86_A DNA segment, CHR 7, way 99.6 1.5E-15 5E-20 100.4 6.5 72 4-93 15-88 (95)
76 3b08_A Polyubiquitin-C, ubiqui 99.6 7.8E-15 2.7E-19 102.1 9.8 73 8-96 2-76 (152)
77 2dzj_A Synaptic glycoprotein S 99.6 8.7E-15 3E-19 95.8 7.7 72 6-89 10-85 (88)
78 2kjr_A CG11242; UBL, ubiquitin 99.6 1.9E-14 6.6E-19 95.5 9.0 74 4-90 13-93 (95)
79 1oqy_A HHR23A, UV excision rep 99.5 1.7E-14 5.9E-19 115.7 8.0 84 4-97 5-88 (368)
80 2kj6_A Tubulin folding cofacto 99.5 4.2E-14 1.4E-18 94.3 8.3 75 4-91 12-94 (97)
81 3ai5_A Yeast enhanced green fl 99.5 4.1E-14 1.4E-18 111.3 9.4 73 5-93 232-306 (307)
82 1v6e_A Cytoskeleton-associated 99.5 7.3E-14 2.5E-18 92.0 8.1 76 4-92 5-87 (95)
83 2dzm_A FAS-associated factor 1 99.5 5.6E-14 1.9E-18 94.3 6.7 74 5-96 8-85 (100)
84 1t0y_A Tubulin folding cofacto 99.5 4.7E-13 1.6E-17 92.0 10.6 75 6-95 6-89 (122)
85 1wf9_A NPL4 family protein; be 99.4 1.1E-13 3.8E-18 93.1 6.0 75 4-93 5-95 (107)
86 2io1_B Small ubiquitin-related 99.4 1.2E-12 4E-17 86.7 8.7 77 4-96 5-83 (94)
87 3shq_A UBLCP1; phosphatase, hy 99.4 6.3E-13 2.2E-17 104.8 7.6 76 3-95 2-82 (320)
88 2io0_B Small ubiquitin-related 99.4 5.1E-12 1.7E-16 83.2 10.1 80 4-97 3-82 (91)
89 2kzr_A Ubiquitin thioesterase 99.3 1.5E-12 5E-17 84.2 4.9 70 8-92 2-77 (86)
90 2d07_B Ubiquitin-like protein 99.3 2E-11 6.7E-16 80.5 10.3 75 5-95 16-92 (93)
91 1wm3_A Ubiquitin-like protein 99.3 3.2E-11 1.1E-15 75.7 9.0 68 7-90 2-71 (72)
92 1wz0_A Ubiquitin-like protein 99.3 2.4E-11 8.2E-16 81.8 8.8 76 5-96 23-100 (104)
93 2k8h_A Small ubiquitin protein 99.2 3.5E-11 1.2E-15 81.9 7.8 76 5-96 25-102 (110)
94 3a4r_A Nfatc2-interacting prot 99.2 7.2E-11 2.5E-15 75.5 8.7 71 4-90 5-78 (79)
95 2eke_C Ubiquitin-like protein 99.2 1.2E-10 4.1E-15 78.7 9.9 74 5-95 30-105 (106)
96 1wjn_A Tubulin-folding protein 99.1 7.9E-10 2.7E-14 72.6 9.2 76 4-93 7-93 (97)
97 3kyd_D Small ubiquitin-related 98.8 2.5E-08 8.6E-13 68.3 9.5 73 5-93 39-113 (115)
98 3pge_A SUMO-modified prolifera 98.7 1.5E-07 5.2E-12 69.9 10.5 77 5-98 28-106 (200)
99 3tix_A Ubiquitin-like protein 98.5 3.5E-07 1.2E-11 67.8 8.1 79 4-97 55-133 (207)
100 4efo_A Serine/threonine-protei 98.2 6.2E-06 2.1E-10 54.5 8.1 47 11-65 18-64 (94)
101 2pjh_A Protein NPL4, nuclear p 98.2 5.8E-07 2E-11 57.4 2.4 66 6-80 4-74 (80)
102 3v7o_A Minor nucleoprotein VP3 98.1 2.8E-07 9.5E-12 69.2 0.1 79 4-97 19-97 (227)
103 2jxx_A Nfatc2-interacting prot 98.0 6.2E-05 2.1E-09 49.8 9.4 68 4-79 23-91 (97)
104 3qx1_A FAS-associated factor 1 98.0 5.3E-05 1.8E-09 48.2 8.9 71 4-89 5-80 (84)
105 3goe_A DNA repair protein RAD6 98.0 8.7E-05 3E-09 47.6 8.9 66 5-80 8-76 (82)
106 3uf8_A Ubiquitin-like protein 97.9 7.7E-05 2.6E-09 55.1 9.5 75 4-95 19-95 (209)
107 3ix6_A TS, tsase, thymidylate 97.7 6E-06 2.1E-10 66.0 -0.1 80 4-98 19-98 (360)
108 2dzk_A UBX domain-containing p 97.5 0.00094 3.2E-08 44.6 9.4 73 4-90 11-88 (109)
109 1wj4_A KIAA0794 protein; UBX d 97.5 0.00066 2.3E-08 46.4 8.1 65 4-78 41-111 (124)
110 2bps_A YUKD protein; ubiquitin 97.4 0.00051 1.8E-08 44.0 6.7 72 5-79 3-76 (81)
111 2cr5_A Reproduction 8; UBX dom 97.4 0.0012 4E-08 44.0 8.6 70 5-90 22-96 (109)
112 2l76_A Nfatc2-interacting prot 97.3 0.0019 6.4E-08 42.6 8.8 67 4-79 19-85 (95)
113 1s3s_G P47 protein; AAA ATPase 97.3 0.0015 5E-08 44.8 8.2 68 4-78 50-120 (127)
114 3ivf_A Talin-1; FERM domain, c 97.3 0.0021 7.3E-08 50.4 9.8 70 5-79 2-77 (371)
115 4da1_A Protein phosphatase 1K, 97.2 4.4E-05 1.5E-09 60.7 0.0 78 4-96 28-105 (389)
116 2kc2_A Talin-1, F1; FERM, adhe 96.8 0.0014 4.9E-08 45.3 4.4 71 8-79 13-115 (128)
117 4e71_A Plexin-B2, MM1; transme 96.4 0.027 9.2E-07 38.0 8.6 80 5-90 10-108 (111)
118 2r2o_A Plexin-B1; effector dom 96.1 0.042 1.4E-06 38.4 8.4 82 5-92 23-128 (138)
119 3h6n_A Plexin-D1; structural g 95.7 0.12 4E-06 35.6 9.2 67 20-92 19-104 (127)
120 4e74_A Plexin-A4; RBD, structu 94.8 0.18 6E-06 34.2 7.7 82 5-92 12-114 (117)
121 2al3_A TUG long isoform; TUG U 94.0 0.31 1.1E-05 31.6 7.3 71 8-92 11-81 (90)
122 3hm6_X Plexin-B1; structural g 92.7 0.7 2.4E-05 39.3 9.3 82 5-92 256-361 (644)
123 3kuz_A Plexin-C1; structural g 92.6 1.4 4.8E-05 30.1 9.1 79 5-90 18-124 (126)
124 4a3p_A Ubiquitin carboxyl-term 92.4 0.54 1.8E-05 34.4 7.4 65 7-78 128-200 (217)
125 3jyu_A Ubiquitin carboxyl-term 91.7 1.7 5.8E-05 32.0 9.4 65 7-78 140-212 (231)
126 3ig3_A Plxna3 protein; plexin 90.9 1.8 6E-05 36.8 9.7 83 5-93 232-335 (627)
127 2v1y_A Phosphatidylinositol-4, 87.7 1 3.6E-05 29.9 4.9 71 5-78 18-97 (108)
128 1ip9_A BEM1 protein; ubiquitin 84.9 2.8 9.5E-05 26.8 5.7 36 5-42 11-46 (85)
129 3ge3_C Toluene-4-monooxygenase 81.9 7.7 0.00026 24.6 7.5 70 8-79 5-76 (84)
130 2c7h_A RBBP6, retinoblastoma-b 81.4 5.2 0.00018 25.5 5.9 33 8-40 8-41 (86)
131 1vjk_A Molybdopterin convertin 81.2 5.5 0.00019 25.1 6.1 54 20-79 29-87 (98)
132 2q5w_D Molybdopterin convertin 80.8 2.3 8E-05 25.3 4.0 46 21-79 19-66 (77)
133 2y3a_A Phosphatidylinositol-4, 80.5 15 0.00051 33.1 10.5 79 4-92 49-136 (1092)
134 1wgr_A Growth factor receptor- 80.0 3.9 0.00013 26.7 5.1 61 5-73 8-75 (100)
135 1oey_A P67-PHOX, neutrophil cy 79.9 6.3 0.00022 24.8 5.9 47 6-62 5-51 (83)
136 1ryj_A Unknown; beta/alpha pro 78.6 7.3 0.00025 23.1 5.8 43 21-79 17-59 (70)
137 3po0_A Small archaeal modifier 78.2 5 0.00017 24.6 5.1 54 20-79 20-78 (89)
138 2l32_A Small archaeal modifier 76.6 4.1 0.00014 24.8 4.2 49 8-68 2-50 (74)
139 2inc_C TOUB protein; DIIRON, 4 74.7 14 0.00046 23.4 8.6 57 21-78 16-74 (83)
140 2daj_A KIAA0977 protein, COBL- 74.3 10 0.00034 24.4 5.6 66 4-77 8-76 (91)
141 2kmm_A Guanosine-3',5'-BIS(dip 73.3 6.9 0.00024 22.8 4.6 29 9-40 3-31 (73)
142 4eut_A Serine/threonine-protei 68.4 36 0.0012 25.7 9.4 52 13-74 318-373 (396)
143 3ivf_A Talin-1; FERM domain, c 65.5 43 0.0015 25.6 8.9 75 5-92 84-167 (371)
144 1wgk_A Riken cDNA 2900073H19 p 62.1 24 0.00084 23.0 5.9 24 21-44 33-59 (114)
145 3qij_A Protein 4.1; cytoskelet 61.9 10 0.00035 28.4 4.5 75 5-92 16-95 (296)
146 2i1j_A Moesin; FERM, coiled-co 60.2 72 0.0025 26.4 9.9 77 5-93 3-84 (575)
147 1rws_A Hypothetical protein PF 59.4 4.2 0.00014 24.6 1.6 43 21-79 24-66 (77)
148 1h4r_A Merlin; FERM, neurofibr 58.7 53 0.0018 24.3 9.8 74 5-92 21-100 (314)
149 1fm0_D Molybdopterin convertin 58.5 20 0.0007 21.1 4.7 47 25-79 23-70 (81)
150 2kvr_A Ubiquitin carboxyl-term 57.8 9.9 0.00034 25.6 3.4 31 21-60 59-91 (130)
151 3qa8_A MGC80376 protein; kinas 56.9 12 0.0004 31.8 4.4 54 14-75 319-373 (676)
152 1f0z_A THis protein; ubiquitin 54.5 18 0.00061 20.9 3.8 51 14-79 5-55 (66)
153 1ef1_A Moesin; membrane, FERM 54.5 60 0.0021 23.7 9.5 73 6-92 1-80 (294)
154 2juo_A GA-binding protein alph 54.3 39 0.0013 21.5 6.7 64 21-95 6-69 (89)
155 4gmv_A RAS-associated and plec 51.4 30 0.001 26.2 5.6 35 5-40 30-64 (281)
156 3hhm_A Phosphatidylinositol-4, 50.7 17 0.0006 32.7 4.6 78 6-93 42-128 (1091)
157 3hvz_A Uncharacterized protein 50.7 30 0.001 21.1 4.6 31 8-41 7-37 (78)
158 3hk0_A Growth factor receptor- 49.4 28 0.00095 26.0 5.0 35 5-40 7-41 (256)
159 2qjl_A URM1, ubiquitin-related 49.1 42 0.0014 20.8 5.2 28 16-43 18-47 (99)
160 3onh_A Ubiquitin-activating en 46.5 28 0.00097 23.6 4.2 57 21-80 9-73 (127)
161 1tyg_B YJBS; alpha beta barrel 46.2 31 0.0011 21.5 4.1 47 21-79 29-76 (87)
162 3au4_A Myosin-X; protein-prote 44.3 35 0.0012 27.7 5.2 36 5-41 215-250 (555)
163 2cu3_A Unknown function protei 44.2 29 0.001 19.8 3.6 50 14-79 4-53 (64)
164 3eud_A Protein SHQ1; CS domain 41.6 33 0.0011 22.9 3.9 64 3-89 25-92 (115)
165 1vd2_A Protein kinase C, IOTA 41.6 64 0.0022 20.3 6.8 36 5-42 5-40 (89)
166 1wz3_A Autophagy 12B, ATG12B, 41.6 39 0.0013 21.5 4.2 59 5-73 12-75 (96)
167 2ylm_A Ubiquitin carboxyl-term 40.2 57 0.0019 26.7 5.9 50 20-73 354-408 (530)
168 3rpf_C Molybdopterin convertin 38.3 59 0.002 18.9 7.3 49 21-79 15-63 (74)
169 1wwt_A Threonyl-tRNA synthetas 37.6 66 0.0022 19.2 5.0 34 5-41 8-42 (88)
170 1y8x_B Ubiquitin-activating en 36.7 24 0.00083 22.6 2.6 58 20-79 7-77 (98)
171 2g1e_A Hypothetical protein TA 36.1 68 0.0023 19.0 6.0 57 21-79 18-79 (90)
172 4a6q_A Histone deacetylase com 35.0 34 0.0012 23.6 3.2 63 26-94 62-140 (143)
173 3pvl_A Myosin VIIA isoform 1; 34.5 57 0.0019 27.5 5.1 36 5-41 262-297 (655)
174 1q1o_A Cell division control p 34.0 60 0.0021 20.9 4.1 24 18-41 23-46 (98)
175 3tca_A Amyloid beta A4 precurs 33.0 65 0.0022 23.1 4.7 34 6-40 34-67 (291)
176 2ylm_A Ubiquitin carboxyl-term 31.9 36 0.0012 27.9 3.4 29 21-58 39-69 (530)
177 2hj1_A Hypothetical protein; s 30.4 1.1E+02 0.0036 19.4 6.2 63 6-79 14-78 (97)
178 1jq4_A Methane monooxygenase c 28.6 89 0.0031 18.9 4.2 29 6-35 4-32 (98)
179 4dxa_B KREV interaction trappe 28.0 52 0.0018 24.7 3.5 31 5-36 4-36 (322)
180 4eo0_A Attachment protein G3P; 26.6 61 0.0021 21.0 3.1 24 32-64 58-81 (115)
181 1wgy_A RAP guanine nucleotide 26.4 1.2E+02 0.0041 19.6 4.6 37 4-41 7-43 (104)
182 3w1s_C Ubiquitin-like protein 24.5 1.3E+02 0.0046 18.7 5.9 60 4-72 6-69 (91)
183 2k8q_A Protein SHQ1; beta-sand 24.5 48 0.0016 22.6 2.4 58 3-78 11-72 (134)
184 2bt6_A Adrenodoxin 1; rutheniu 23.3 1.1E+02 0.0038 18.9 4.0 28 5-33 5-32 (108)
185 2dhz_A RAP guanine nucleotide 22.8 1.7E+02 0.0059 19.4 6.8 36 5-41 8-43 (120)
186 2wlb_A ETP1-FD, electron trans 22.7 1.3E+02 0.0045 18.3 4.3 28 6-34 3-30 (103)
187 2k9x_A Tburm1, uncharacterized 21.3 1.4E+02 0.0049 19.1 4.3 43 1-44 1-51 (110)
188 2y5c_A Adrenodoxin-like protei 20.2 1.4E+02 0.0048 18.5 4.0 27 6-33 5-31 (109)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=100.00 E-value=2.9e-37 Score=216.11 Aligned_cols=113 Identities=44% Similarity=0.803 Sum_probs=91.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
+|.+.|+||+.+|+++.++++++++||++||++|+++||+++|.+|+++++|||||+||+|+|+.||++|+|+.|+||++
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 68899999999999998899999999999999999999999999997789999999999999999999999999999988
Q ss_pred eEEEEEEEcCCccccccccccCCCCCCCceEEeeC
Q 033473 84 VIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 118 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~k~~k~~~~k~~~~~c~c~i~ 118 (118)
++|||||+++.++.++ |+.+++|++.+|+|+||
T Consensus 94 v~tmhlVlrl~g~~kk--kk~~~~pkk~~C~C~Il 126 (126)
T 1se9_A 94 VTTMHVIIQAPVTEKE--KKPKGDPKMNKCVCSVM 126 (126)
T ss_dssp CEEEEEEECCCSSCCC--C----------------
T ss_pred cEEEEEEeccCCcccc--ccCCCCCCCCCceEEeC
Confidence 9999999999988665 78899999999999997
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=181.39 Aligned_cols=109 Identities=23% Similarity=0.549 Sum_probs=97.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCC-ccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK-TIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~-e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
.+.+.|+|++.+| +.++++|++++||++||++|++.||.+| |.+|.++++|||||+||+|+|+.||++|+|+.|++
T Consensus 15 ~~~m~I~vktl~G-~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~-- 91 (125)
T 2gow_A 15 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT-- 91 (125)
T ss_dssp TTCEEEEEECTTS-CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSE--
T ss_pred CCeEEEEEEeCCC-CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc--
Confidence 4669999999999 5568999999999999999999999995 78876799999999999999999999999998854
Q ss_pred ceEEEEEEEcCCccccccc-cccCCCCCCCceEEeeC
Q 033473 83 GVIIMHVVVQPSLAKTKTE-KKIDDSPRKIVCSCSIL 118 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~~k~~-k~~~~k~~~~~c~c~i~ 118 (118)
+|||||+++.++.++++ ++...+++..+| |+||
T Consensus 92 --~tlhlv~r~~~~~~~~~~~~~~~~~~~~~C-C~il 125 (125)
T 2gow_A 92 --TVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 125 (125)
T ss_dssp --EEEEEEECSCCSSSSSCCCCCCCSTTCCCC-CCCC
T ss_pred --eEEEEEecCCCCccccccccccCCCCCCCc-cEeC
Confidence 78999999998877754 566777888999 9998
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.94 E-value=5.3e-26 Score=156.93 Aligned_cols=92 Identities=23% Similarity=0.535 Sum_probs=82.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCC-ccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK-TIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~-e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
++.+.|+|++.+| +.++++|++++||++||++|+++||.+| |.+|.++++|||||+||+|+|+.||++|+|..+++
T Consensus 14 ~~~m~I~vKtl~G-~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~-- 90 (116)
T 1wgh_A 14 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT-- 90 (116)
T ss_dssp SSSEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCE--
T ss_pred CCeEEEEEEeCCC-CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc--
Confidence 4789999999999 5568999999999999999999999996 66655699999999999999999999999988754
Q ss_pred ceEEEEEEEcCCcccccc
Q 033473 83 GVIIMHVVVQPSLAKTKT 100 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~~k~ 100 (118)
+|||||+++.++.+++
T Consensus 91 --~tlhLvlr~~~~~~~~ 106 (116)
T 1wgh_A 91 --TVMHLVARETLPEPNS 106 (116)
T ss_dssp --EEEEEEECSSCSSSCC
T ss_pred --eEEEEEccCCCCCCCc
Confidence 8999999998887664
No 4
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=3.5e-19 Score=116.87 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=70.2
Q ss_pred CCceEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccc--CCCCCC
Q 033473 3 DEELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGE 79 (118)
Q Consensus 3 ~~~~i~l~~~~~~g~~-~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~--~i~~g~ 79 (118)
++..+.|.++..+|.. ...+++++++||.+||++|++.+|. .+| +++|||||+||+|+|+.+|++| +|.+|
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~---~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~- 77 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPE---RPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKR- 77 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTT---CCC--TTTCEEEETTEECCSSSCHHHHSCSSSCS-
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcC---CCC--hHHeEEEECCEECcCcCCHHHHhcCCCCC-
Confidence 3567899999998852 2256677999999999999998642 344 9999999999999999999999 99988
Q ss_pred CCCceEEEEEEEcCCccc
Q 033473 80 VPGGVIIMHVVVQPSLAK 97 (118)
Q Consensus 80 ~~~~~~t~hlv~~~~~~~ 97 (118)
.++||++++.+++
T Consensus 78 -----~~i~lv~~~~gg~ 90 (93)
T 1wgd_A 78 -----HVLHLVCNVKSGP 90 (93)
T ss_dssp -----EEEEEECCCCCCC
T ss_pred -----CEEEEEeCCCCCC
Confidence 8899998877663
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.79 E-value=9.9e-19 Score=113.54 Aligned_cols=79 Identities=18% Similarity=0.391 Sum_probs=68.6
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCC
Q 033473 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (118)
Q Consensus 3 ~~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (118)
+...+.|.++..+|+.+ .+++++++||.+||++|++. +| +++|||||+||.|+|+.+|++|+| +|
T Consensus 2 ~~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrLi~~Gk~L~d~~tL~~~~i-~g-- 68 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAASVSIP---------SEKQRLIYQGRVLQDDKKLQEYNV-GG-- 68 (90)
T ss_dssp CCCEEEEEEEETTCCEE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTC-TT--
T ss_pred CCcEEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHhCCC---------HHHEEEEECCeECCCCCCHHHcCC-CC--
Confidence 35678999999999665 79999999999999999998 55 999999999999999999999999 77
Q ss_pred CCceEEEEEEEcCCcccc
Q 033473 81 PGGVIIMHVVVQPSLAKT 98 (118)
Q Consensus 81 ~~~~~t~hlv~~~~~~~~ 98 (118)
.++||+++.++...
T Consensus 69 ----~~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 69 ----KVIHLVERAPPQTH 82 (90)
T ss_dssp ----EEEEEEECCCC---
T ss_pred ----cEEEEEecCCCCCC
Confidence 78999999766543
No 6
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=8.1e-19 Score=113.53 Aligned_cols=72 Identities=19% Similarity=0.426 Sum_probs=65.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
...+.|.++..+|+.+ .+++++++||++||++|++. +| +++|||||+||.|+|+.+|++|+| +|
T Consensus 15 ~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i-~g--- 80 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAASVSIP---------SEKQRLIYQGRVLQDDKKLQEYNV-GG--- 80 (88)
T ss_dssp CCEEEEEEEETTSCEE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTC-TT---
T ss_pred CCeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHhCCC---------HHHEEEEECCEECCCCCcHHHcCC-CC---
Confidence 4678999999999654 79999999999999999988 55 999999999999999999999999 78
Q ss_pred CceEEEEEEEc
Q 033473 82 GGVIIMHVVVQ 92 (118)
Q Consensus 82 ~~~~t~hlv~~ 92 (118)
.++||++|
T Consensus 81 ---~~i~lv~R 88 (88)
T 4eew_A 81 ---KVIHLVER 88 (88)
T ss_dssp ---EEEEEEEC
T ss_pred ---cEEEEEEC
Confidence 78999976
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.79 E-value=8.9e-19 Score=111.14 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=65.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~----- 68 (79)
T 3phx_B 4 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGLEGVQ---------DDLFWLTFEGKPLEDQLPLGEYGLKPL----- 68 (79)
T ss_dssp CEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTCCTT-----
T ss_pred CEEEEEEeCCCCEE-EEEECCcChHHHHHHHHHhhcCCC---------HHHEEEEECCEECCCCCcHHHCCCCCC-----
Confidence 46788889999665 79999999999999999988 55 999999999999999999999999999
Q ss_pred eEEEEEEEcCC
Q 033473 84 VIIMHVVVQPS 94 (118)
Q Consensus 84 ~~t~hlv~~~~ 94 (118)
.++|++++..
T Consensus 69 -~~l~l~~rl~ 78 (79)
T 3phx_B 69 -STVFMNLRLR 78 (79)
T ss_dssp -CEEEEEECCB
T ss_pred -CEEEEEEecC
Confidence 6899998864
No 8
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1.4e-18 Score=109.90 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=66.1
Q ss_pred EEEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 7 IDIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~-v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
+.|.++..+|+.++.++ +++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip---------~~~qrL~~~g~~L~d~~tL~~~~i~~g----- 68 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE---------PGLQRLFYRGKQMEDGHTLFDYEVRLN----- 68 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTTTTTCCTT-----
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC-----
Confidence 57888889997755788 99999999999999998 55 999999999999999999999999998
Q ss_pred eEEEEEEEcCC
Q 033473 84 VIIMHVVVQPS 94 (118)
Q Consensus 84 ~~t~hlv~~~~ 94 (118)
.++|++++++
T Consensus 69 -~~i~l~~r~~ 78 (78)
T 2faz_A 69 -DTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEECCC
T ss_pred -CEEEEEEeCC
Confidence 6899998864
No 9
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.78 E-value=2.1e-20 Score=134.06 Aligned_cols=90 Identities=22% Similarity=0.316 Sum_probs=7.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
+|.++..+|..+ .+++++++||.+||++|++.. .+| +++|||||+|++|+|+.+|++|+|.+| .++
T Consensus 2 qI~VK~l~G~~~-~l~V~~~~TV~~LK~~I~~~~-----gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g------stL 67 (152)
T 3u5c_f 2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHHh-----CCC--HHHEEEEECCEEccccCcHHHcCCCCC------CEE
Confidence 567778888654 799999999999999999882 233 999999999999999999999999998 789
Q ss_pred EEEEcCCccccccccccCCCCCCC
Q 033473 88 HVVVQPSLAKTKTEKKIDDSPRKI 111 (118)
Q Consensus 88 hlv~~~~~~~~k~~k~~~~k~~~~ 111 (118)
||+++..++.++++|+.+++|++.
T Consensus 68 ~Lvlrl~GGgKkrkKk~~t~Pkk~ 91 (152)
T 3u5c_f 68 HLVLRLRGGGKKRKXXXXXXXXXX 91 (152)
T ss_dssp --------------CCCCCCCSCC
T ss_pred EEEeeccCCCcCcccccccccccc
Confidence 999999999888878888888753
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.78 E-value=1.3e-18 Score=115.79 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=65.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
+..++|.++...|+.+ .++++|++||.+||++|+++ +++| +++|||||+||+|+|+.||++|+|.+|
T Consensus 19 ~~mIqI~Vk~~~Gkk~-~v~v~p~DTI~~LK~~I~~k-----~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dg----- 85 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKV-RVKCLGEDSVGDFKKVLSLQ-----IGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQ----- 85 (93)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred CceEEEEEECCCCCEE-EEEECCcCHHHHHHHHHHHH-----hCCC--HHHEEEEeCCEEccCcCCHHHcCCCCC-----
Confidence 5789999999999766 79999999999999999988 2233 999999999999999999999999999
Q ss_pred eEEEEEE
Q 033473 84 VIIMHVV 90 (118)
Q Consensus 84 ~~t~hlv 90 (118)
+|+||.
T Consensus 86 -stLhL~ 91 (93)
T 3plu_A 86 -TNLELY 91 (93)
T ss_dssp -CEEEEE
T ss_pred -CEEEEE
Confidence 789985
No 11
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.77 E-value=7e-19 Score=117.92 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=63.7
Q ss_pred CceEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccc--CCCCCCC
Q 033473 4 EELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGEV 80 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~-~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~--~i~~g~~ 80 (118)
+..+.|.||+.+|.. ...+++++++||.+||++|+++++. .+| +++|||||+||+|+|+.||++| +|.+|
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g---~pp--~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~-- 93 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPS---KPL--TKDQRLVYSGRLLPDHLQLKDILRKQDEY-- 93 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTT---CCC--TTTCCEEETTEEECTTSBTHHHHTTTCSE--
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcC---CCC--hhhEEEEECCEECCCCCCHHHHhcCCCCC--
Confidence 356999999998862 2378899999999999999998652 122 6999999999999999999999 99988
Q ss_pred CCceEEEEEE
Q 033473 81 PGGVIIMHVV 90 (118)
Q Consensus 81 ~~~~~t~hlv 90 (118)
.|||||
T Consensus 94 ----~tihLv 99 (99)
T 2kdb_A 94 ----HMVHLV 99 (99)
T ss_dssp ----EEEEEC
T ss_pred ----CEEEeC
Confidence 889985
No 12
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.77 E-value=1.9e-18 Score=109.64 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=68.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.+.|.++..+|+.+ .+++++++||.+||++|+++ +| +++|||+|+|+.|+|+.||++|+|.+|
T Consensus 2 ~~m~i~vk~~~g~~~-~~~v~~~~tv~~lk~~i~~~~gi~---------~~~qrL~~~G~~L~d~~tl~~~~i~~~---- 67 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE---- 67 (79)
T ss_dssp CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCHHHHTCCTT----
T ss_pred CeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHHCCC---------cccEEEEECCEEeCCCCCHHHcCCCCC----
Confidence 568999999999665 79999999999999999998 55 999999999999999999999999999
Q ss_pred ceEEEEEEEcCCc
Q 033473 83 GVIIMHVVVQPSL 95 (118)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (118)
.++|++++..+
T Consensus 68 --~~i~l~~~~~G 78 (79)
T 2uyz_B 68 --DVIEVYQEQTG 78 (79)
T ss_dssp --EEEEEEECCCC
T ss_pred --CEEEEEEeccC
Confidence 78999988665
No 13
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.77 E-value=1.8e-18 Score=112.62 Aligned_cols=76 Identities=26% Similarity=0.387 Sum_probs=65.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|.++..+|+.+ .+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i~~g------~ 65 (88)
T 4fbj_B 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG------S 65 (88)
T ss_dssp EEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTTTTTCCTT------C
T ss_pred EEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------hhHEEEEECCeECCCCCcHHHcCCCCC------C
Confidence 578888999665 79999999999999999988 55 999999999999999999999999999 6
Q ss_pred EEEEEEcCCccccc
Q 033473 86 IMHVVVQPSLAKTK 99 (118)
Q Consensus 86 t~hlv~~~~~~~~k 99 (118)
++||+++..++..-
T Consensus 66 ~l~l~~rl~Gg~~~ 79 (88)
T 4fbj_B 66 VLHLVLALRGGGGL 79 (88)
T ss_dssp EEEEECBCC-----
T ss_pred EEEEEEECCCCCCC
Confidence 89999998877543
No 14
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=120.18 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=68.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
+..++|++++..+.+...++|++++||.+||+++++. +| +++|||||+||+|+|++||++|||++|
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP---------~e~qrLIy~GKiLKD~eTL~~~gIk~g--- 80 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP---------HSVLQIRYSGKILKNNETLVQHGVKPQ--- 80 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC---------TTTEEEEETTEEECSSCCHHHHSCCSS---
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC---------hHHEEEEECCeEcCCcchHHHcCCCCC---
Confidence 3568888886544355589999999999999999998 55 999999999999999999999999999
Q ss_pred CceEEEEEEEcCCcccc
Q 033473 82 GGVIIMHVVVQPSLAKT 98 (118)
Q Consensus 82 ~~~~t~hlv~~~~~~~~ 98 (118)
.|+|||++...+..
T Consensus 81 ---~TIhLvi~s~~p~~ 94 (118)
T 2daf_A 81 ---EIVQVEIFSTNPDL 94 (118)
T ss_dssp ---CEEEEEEEESCTTT
T ss_pred ---CEEEEEEecCCCcc
Confidence 78999998766643
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=1.6e-18 Score=116.66 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=65.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
++.+.|.++...|+.+ .+++++++||.+||++|+++ +| +++|||||+||+|+|+.||++|+|.+|
T Consensus 26 ~~mm~I~VKtl~Gk~i-~lev~p~dTV~~lK~~Ia~k~Gip---------~~qQrLi~~Gk~L~D~~TL~dygI~~g--- 92 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKV-RVKCNTDDTIGDLKKLIAAQTGTR---------WNKIVLKKWYTIFKDHVSLGDYEIHDG--- 92 (100)
T ss_dssp CCEEEEEEECSSSSCE-EEEEETTSBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCSSCBHHHHTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------HHHEEEEECCEECCCCCCHHHcCCCCC---
Confidence 5679999999999665 79999999999999999998 55 999999999999999999999999999
Q ss_pred CceEEEEEEE
Q 033473 82 GGVIIMHVVV 91 (118)
Q Consensus 82 ~~~~t~hlv~ 91 (118)
.|+||+.
T Consensus 93 ---stlhL~~ 99 (100)
T 1uh6_A 93 ---MNLELYY 99 (100)
T ss_dssp ---EEEEEEC
T ss_pred ---CEEEEEe
Confidence 7899974
No 16
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.77 E-value=3.2e-18 Score=109.63 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=65.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..+.|.++..+|+.+ .+++++++||++||++|++.+. .+.+| +++|||||+|+.|+|+.+|++|+|.+|
T Consensus 4 ~~m~i~vk~~~g~~~-~~~v~~~~TV~~lK~~i~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g------ 72 (85)
T 2wyq_A 4 MAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEK------ 72 (85)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHHHC--TTTCC--GGGEEEEETTEECCTTSBGGGGCCCTT------
T ss_pred ceEEEEEEECCCCEE-EEEECCCCCHHHHHHHHHhhcc--ccCCC--HHHeEEEECCEECcCCCCHHHcCCCCC------
Confidence 357889999999655 7999999999999999999621 01233 999999999999999999999999998
Q ss_pred EEEEEEEcCCcc
Q 033473 85 IIMHVVVQPSLA 96 (118)
Q Consensus 85 ~t~hlv~~~~~~ 96 (118)
.++||+.+++.+
T Consensus 73 ~~i~l~~~~~~~ 84 (85)
T 2wyq_A 73 NFVVVMVTKTKA 84 (85)
T ss_dssp SEEEEEEC----
T ss_pred CEEEEEEcCCCC
Confidence 679999876543
No 17
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=5.6e-18 Score=109.06 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=70.0
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 3 ~~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
++..+.|.++..+|+. +.+++++++||.+||++|++.. .+| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~-----gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g---- 71 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIEDQQ-----GLP--KKQQQLEFQGQVLQDWLGLGIYGIQDS---- 71 (87)
T ss_dssp CSSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHHHT-----CCC--TTTEEEEETTEECCSSSBHHHHTCCTT----
T ss_pred CCCCEEEEEEcCCCCE-EEEEeCCCChHHHHHHHHHHHh-----CCC--hHHEEEEECCEEccCCCCHHHCCCCCC----
Confidence 3567899999999954 4799999999999999999982 122 999999999999999999999999998
Q ss_pred ceEEEEEEEcCCcc
Q 033473 83 GVIIMHVVVQPSLA 96 (118)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (118)
.++||+++..++
T Consensus 72 --~~i~l~~~~~GG 83 (87)
T 1wh3_A 72 --DTLILSKKKGSG 83 (87)
T ss_dssp --EEEEEEECSCCC
T ss_pred --CEEEEEEeccCC
Confidence 789999998765
No 18
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.5e-18 Score=110.08 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=69.4
Q ss_pred CceEEEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~-~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
...+.|.++..+|...+.+ ++++++||.+||++|++.. .+| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~-----gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g---- 73 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALF-----DVR--PECQRLFYRGKQLENGYTLFDYDVGLN---- 73 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHS-----CCC--TTTEEEEETTEECCSSSBHHHHTCCTT----
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHH-----CcC--hhhEEEEECCeECCCCCCHHHCCCCCC----
Confidence 5678999999998433479 5999999999999999982 122 999999999999999999999999998
Q ss_pred ceEEEEEEEcCCccc
Q 033473 83 GVIIMHVVVQPSLAK 97 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~ 97 (118)
.++||++++.+++
T Consensus 74 --~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 74 --DIIQLLVRPDSGP 86 (89)
T ss_dssp --CEEEEEECCCCSS
T ss_pred --CEEEEEEeCCCCC
Confidence 6899999987653
No 19
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.8e-18 Score=113.06 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=67.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
++.++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+|.+|
T Consensus 20 ~~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i~~g--- 86 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE--- 86 (98)
T ss_dssp --CCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTCBSGGGTCCTT---
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHhCCC---------hhHEEEEECCEECCCCCcHHHCCCCCC---
Confidence 3668999999999665 79999999999999999998 55 999999999999999999999999999
Q ss_pred CceEEEEEEEcCCc
Q 033473 82 GGVIIMHVVVQPSL 95 (118)
Q Consensus 82 ~~~~t~hlv~~~~~ 95 (118)
.++||+++..+
T Consensus 87 ---~~i~l~~rl~G 97 (98)
T 4hcn_B 87 ---STLHLVLRLRG 97 (98)
T ss_dssp ---EEEEEECBCSC
T ss_pred ---CEEEEEEecCC
Confidence 78999988765
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.76 E-value=2.7e-18 Score=110.44 Aligned_cols=76 Identities=26% Similarity=0.406 Sum_probs=68.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
+..+.|.++..+|..+ .+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+|.+|
T Consensus 10 ~~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~--- 76 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG--- 76 (88)
T ss_dssp CCCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCCEEETTEECCTTSBGGGGTCCTT---
T ss_pred CCcEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------HHHEEEEECCeECCCCCcHHHcCCCCC---
Confidence 4678999999999665 79999999999999999988 55 999999999999999999999999998
Q ss_pred CceEEEEEEEcCCc
Q 033473 82 GGVIIMHVVVQPSL 95 (118)
Q Consensus 82 ~~~~t~hlv~~~~~ 95 (118)
.++||+++..+
T Consensus 77 ---~~i~l~~rl~G 87 (88)
T 3dbh_I 77 ---SVLHLVLRLRG 87 (88)
T ss_dssp ---CEEEECCCCCC
T ss_pred ---CEEEEEEeCCC
Confidence 68999988765
No 21
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.76 E-value=4.3e-18 Score=111.09 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=67.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
+..++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 15 ~~~m~i~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g--- 81 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE--- 81 (91)
T ss_dssp CCSEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTCBTGGGTCCTT---
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhhhCCC---------hhhEEEEECCeECCCcCcHHHCCCCCC---
Confidence 4678999999999665 79999999999999999998 55 999999999999999999999999999
Q ss_pred CceEEEEEEEcC
Q 033473 82 GGVIIMHVVVQP 93 (118)
Q Consensus 82 ~~~~t~hlv~~~ 93 (118)
.++||++|.
T Consensus 82 ---~~i~l~~rl 90 (91)
T 3v6c_B 82 ---STLHLVLRL 90 (91)
T ss_dssp ---CEEEEECCC
T ss_pred ---CEEEEEEec
Confidence 689999875
No 22
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=108.07 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=67.4
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 3 ~~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.+.+.|+++..+|..+ .+++++++||++||++|++... +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~~~~m~i~vk~~~g~~~-~~~v~~~~tV~~LK~~i~~~~~-----i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g---- 71 (81)
T 2dzi_A 4 GSSGMQLTVKALQGREC-SLQVPEDELVSTLKQLVSEKLN-----VP--VRQQRLLFKGKALADGKRLSDYSIGPN---- 71 (81)
T ss_dssp SSSSEEEEEEETTSCEE-EEEECSSCBHHHHHHHHHHHTC-----CC--TTTCEEEETTEECCTTSBGGGGTCCSS----
T ss_pred CCCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHC-----cC--HHHEEEEECCeECCCCCcHHHcCCCCC----
Confidence 35778999999989554 7999999999999999999821 22 999999999999999999999999998
Q ss_pred ceEEEEEEEcCC
Q 033473 83 GVIIMHVVVQPS 94 (118)
Q Consensus 83 ~~~t~hlv~~~~ 94 (118)
.++|++++++
T Consensus 72 --~~i~l~~~~~ 81 (81)
T 2dzi_A 72 --SKLNLVVKPL 81 (81)
T ss_dssp --BCCEEECCCC
T ss_pred --CEEEEEEeCC
Confidence 6799998763
No 23
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.6e-18 Score=114.97 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=60.7
Q ss_pred EEEEEEeCC----CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 7 IDIKFRLYD----GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 7 i~l~~~~~~----g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.|++++.+ |+. +.+++++++||.+||++|++.. .+| +++|||||+||+|+|+.||++|+|.+|
T Consensus 16 ati~V~~~~~~~~~~~-~~lev~~~~TV~~lK~kI~~k~-----gip--~~qQrLI~~GKiL~D~~TL~~y~I~~g---- 83 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRK-NLLETRLHITGRELRSKIAETF-----GLQ--ENYIKIVINKKQLQLGKTLEEQGVAHN---- 83 (100)
T ss_dssp EEEEEECCTTTCCSSS-EEEEEESSSBHHHHHHHHHHHT-----TCC--STTCEEEETTEECCTTSBHHHHTCCSS----
T ss_pred EEEEEEecCCCCCCcE-EEEEeCCcCHHHHHHHHHHHHH-----CcC--HHHeEEEeCCeECCCCCcHHHcCCCCC----
Confidence 567777776 534 4899999999999999999992 123 999999999999999999999999999
Q ss_pred ceEEEEEEEcCCc
Q 033473 83 GVIIMHVVVQPSL 95 (118)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (118)
.++|+ ++..+
T Consensus 84 --sti~v-l~lrg 93 (100)
T 1wju_A 84 --VKAMV-LELKQ 93 (100)
T ss_dssp --EEEEE-ECCCC
T ss_pred --CEEEE-EEECC
Confidence 67754 44433
No 24
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=6.2e-18 Score=111.77 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=68.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CcccccCCCCCCCCCc
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPGG 83 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~~~~ 83 (118)
..+.|.++..+| . +.+++++++||.+||++|++.. .+| +++|||||+||.|+|+ .+|++|+|.+|
T Consensus 14 ~~~~I~Vk~~~~-~-~~l~v~~~~TV~~LK~~I~~~~-----gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~g----- 79 (94)
T 2kan_A 14 RKIHVTVKFPSK-Q-FTVEVDRTETVSSLKDKIHIVE-----NTP--IKRMQLYYSGIELADDYRNLNEYGITEF----- 79 (94)
T ss_dssp CCEEEEEECSSC-E-EEEEECTTCBHHHHHHHHHHHS-----SSC--TTTEEEEETTEEECCTTSBHHHHTCCTT-----
T ss_pred CCEEEEEEcCCc-E-EEEEECCCCcHHHHHHHHHHHH-----CcC--HHHEEEEECCEECCCCcccHHHCCCCCC-----
Confidence 568888998887 4 4799999999999999999982 233 9999999999999999 99999999999
Q ss_pred eEEEEEEEcCCccc
Q 033473 84 VIIMHVVVQPSLAK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
.++||++++.+++
T Consensus 80 -stl~lv~r~~gg~ 92 (94)
T 2kan_A 80 -SEIVVFLKSINRA 92 (94)
T ss_dssp -EEEEEEECCCSSC
T ss_pred -CEEEEEEeCCCCC
Confidence 8899999987764
No 25
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.75 E-value=4.8e-18 Score=113.71 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=64.3
Q ss_pred CceEEEEEEeCCCCeeeeE--EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCC-CCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPF--RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEV 80 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~--~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~ 80 (118)
+..+.|.|++.+|..+ .+ ++++++||++||++|++... ++| +++|||||+||+|+|+.+|++|+| .+|
T Consensus 17 ~~~m~I~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~~~----gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g-- 87 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISEEK----ASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN-- 87 (98)
T ss_dssp -CCEEEEEEECSSSCE-EEEEEECTTCBHHHHHHHHHHTTS----CSC--GGGEEEEETTEEECTTCBGGGSCCBTTB--
T ss_pred CCCEEEEEEcCCCCEE-EEEEecCCCChHHHHHHHHHHHhc----CCC--hhhEEEEECCEECcCcCCHHHcCcCCCC--
Confidence 4678999999999643 45 66799999999999944322 234 999999999999999999999999 988
Q ss_pred CCceEEEEEEEcCC
Q 033473 81 PGGVIIMHVVVQPS 94 (118)
Q Consensus 81 ~~~~~t~hlv~~~~ 94 (118)
.++||+++.+
T Consensus 88 ----~ti~lmvskp 97 (98)
T 4a20_A 88 ----STITVMIKPN 97 (98)
T ss_dssp ----CEEEEEECCC
T ss_pred ----CEEEEEEeCC
Confidence 6799988754
No 26
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.75 E-value=6.4e-18 Score=110.74 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=66.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033473 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 2 m~i~vk~~~g~~~-~~~v~~~~TV~~LK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~------ 65 (96)
T 3k9o_B 2 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 65 (96)
T ss_dssp CEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred cEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhhhCCC---------hhHEEEEECCEECCCCCcHHHcCCCCC------
Confidence 4688888999655 79999999999999999998 55 999999999999999999999999998
Q ss_pred EEEEEEEcCCcccccc
Q 033473 85 IIMHVVVQPSLAKTKT 100 (118)
Q Consensus 85 ~t~hlv~~~~~~~~k~ 100 (118)
.++||+++..++.+.+
T Consensus 66 ~~i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 66 STLHLVLRLRGYADLR 81 (96)
T ss_dssp CEEEEEECCCC-----
T ss_pred CEEEEEEEcCCCCccc
Confidence 6899999988876543
No 27
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.6e-18 Score=113.69 Aligned_cols=76 Identities=21% Similarity=0.441 Sum_probs=63.4
Q ss_pred EEEEEEeCCCCeeeeEEeC--CcchHHHHHHHH-HhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCC-CCCCCCC
Q 033473 7 IDIKFRLYDGSDIGPFRYS--SASTVDMLKQRI-VSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEVPG 82 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~--~~~tV~~LK~~I-~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~~~ 82 (118)
+.|.|+..+|..+ .++++ +++||.+||++| ++. +++| +++|||||+||+|+|+.||++|+| ++|
T Consensus 2 mqI~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~---- 69 (87)
T 2lxa_A 2 VHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISEE-----KASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN---- 69 (87)
T ss_dssp CEEEEEECSSSCE-ECCEECCTTCBHHHHHHHHHHTT-----SCSS--STTEEEEETTEECCTTCBHHHHCCCGGG----
T ss_pred EEEEEEcCCCCEE-EEEEcCCCCCcHHHHHHHHHHHh-----cCCC--hHHEEEEECCEECcCcCCHHHcCCCCCC----
Confidence 5788999999654 56644 999999999999 654 1333 999999999999999999999999 577
Q ss_pred ceEEEEEEEcCCcc
Q 033473 83 GVIIMHVVVQPSLA 96 (118)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (118)
.++||+.+|...
T Consensus 70 --stl~v~~~~~~~ 81 (87)
T 2lxa_A 70 --STITVMIKPNLE 81 (87)
T ss_dssp --CEEEEEECCCCC
T ss_pred --CEEEEEcCCCcc
Confidence 789999888654
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=111.30 Aligned_cols=78 Identities=19% Similarity=0.110 Sum_probs=64.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.+.|.++..+|+.+ .+++++++||.+||++|++.. .+| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 4 ~m~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~-----gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g------~ 69 (88)
T 2hj8_A 4 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGLE-----GVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------S 69 (88)
T ss_dssp EEEEEEEETTSCEE-EEEEESSSBHHHHHHHHHHHT-----CSC--TTTEEEESSSSCCCTTSBHHHHHCSTT------C
T ss_pred cEEEEEECCCCCEE-EEEECCCCcHHHHHHHHHHHh-----CCC--hhHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence 57888888889554 799999999999999999982 233 999999999999999999999999999 6
Q ss_pred EEEEEEcCCccc
Q 033473 86 IMHVVVQPSLAK 97 (118)
Q Consensus 86 t~hlv~~~~~~~ 97 (118)
++||+++..+++
T Consensus 70 ~i~l~~~~~gg~ 81 (88)
T 2hj8_A 70 TVFMNLRLRGGL 81 (88)
T ss_dssp EEEEEEC-----
T ss_pred EEEEEEEcCCCc
Confidence 899998877664
No 29
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=4.6e-18 Score=110.32 Aligned_cols=72 Identities=25% Similarity=0.350 Sum_probs=64.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCee-cCCCCcccccCCCCCCCCC
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKI-LENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~-L~D~~tL~~~~i~~g~~~~ 82 (118)
-..|.++..+|+.+ .+++++++||++||++|++. +| +++|||||+|+. |+|+.+|++|+|.+|
T Consensus 10 ~~~i~vk~l~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~lL~D~~tL~~y~I~~g---- 75 (84)
T 2kk8_A 10 HMKFLVENLNGSSF-ELEVDYRDTLLVVKQKIERSQHIP---------VSKQTLIVDGIVILREDLTVEQCQIVPT---- 75 (84)
T ss_dssp CEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCCSSSBHHHHTCCTT----
T ss_pred ceEEEEEecCCcEE-EEEECCCChHHHHHHHHHHHHCcC---------hHHEEEEECCEEecCCcCCHHHcCCCCC----
Confidence 35788888999665 79999999999999999998 55 999999999999 999999999999998
Q ss_pred ceEEEEEEEcC
Q 033473 83 GVIIMHVVVQP 93 (118)
Q Consensus 83 ~~~t~hlv~~~ 93 (118)
.++||+++|
T Consensus 76 --s~i~lv~~p 84 (84)
T 2kk8_A 76 --SDIQLEVSS 84 (84)
T ss_dssp --SCEEEEECC
T ss_pred --CEEEEEEcC
Confidence 679999875
No 30
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.1e-17 Score=106.70 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=67.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
..++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|.|+.|+|+.+|++|+|.++
T Consensus 2 s~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~i~---------~~~qrL~~~g~~L~d~~tL~~~~i~~~---- 67 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKW---- 67 (85)
T ss_dssp -CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTGGGTCCTT----
T ss_pred CeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCCHHHcCCCCC----
Confidence 357889999999654 79999999999999999998 55 999999999999999999999999998
Q ss_pred ceEEEEEEEcCCcc
Q 033473 83 GVIIMHVVVQPSLA 96 (118)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (118)
.++||+++..++
T Consensus 68 --~~l~l~~r~~GG 79 (85)
T 3mtn_B 68 --STLFLLLRLRGG 79 (85)
T ss_dssp --CEEEEECCCCCC
T ss_pred --CEEEEEEECcCC
Confidence 689999987765
No 31
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=7.3e-18 Score=107.65 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=65.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 3 ~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~ip---------~~~qrL~~~g~~L~d~~tL~~~~i~~~----- 67 (85)
T 3n3k_B 3 HMRIVVKTLMGRTI-ILEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIHNH----- 67 (85)
T ss_dssp -CEEEEECGGGCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETBEECCTTCBTTTTTCCTT-----
T ss_pred eEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------HHHEEEEECCeECCCCCCHHHCCCCCC-----
Confidence 46788888888654 79999999999999999998 55 999999999999999999999999998
Q ss_pred eEEEEEEEcCCcc
Q 033473 84 VIIMHVVVQPSLA 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
.++||+++..++
T Consensus 68 -~~i~l~~rl~GG 79 (85)
T 3n3k_B 68 -SALYLLLKLRGG 79 (85)
T ss_dssp -CEEEEEECCC--
T ss_pred -CEEEEEEeccCC
Confidence 689999998765
No 32
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.74 E-value=1.5e-17 Score=104.38 Aligned_cols=71 Identities=30% Similarity=0.383 Sum_probs=63.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+++. +|.. +.+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~m~i~vk~-~g~~-~~~~v~~~~tV~~LK~~i~~~~~i~---------~~~qrL~~~gk~L~d~~tL~~~~i~~g----- 67 (77)
T 2bwf_A 4 SLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINKANGIP---------VANQRLIYSGKILKDDQTVESYHIQDG----- 67 (77)
T ss_dssp EEEEEEEE-TTEE-EEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred EEEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHHHhCCC---------HHHEEEEECCeEcCCCCCHHHcCCCCC-----
Confidence 37888888 7844 579999999999999999988 55 999999999999999999999999999
Q ss_pred eEEEEEEEcC
Q 033473 84 VIIMHVVVQP 93 (118)
Q Consensus 84 ~~t~hlv~~~ 93 (118)
.++|++.++
T Consensus 68 -~~i~l~~~~ 76 (77)
T 2bwf_A 68 -HSVHLVKSQ 76 (77)
T ss_dssp -CEEEEEECC
T ss_pred -CEEEEEEcC
Confidence 689998765
No 33
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.74 E-value=1.3e-17 Score=103.91 Aligned_cols=72 Identities=28% Similarity=0.426 Sum_probs=64.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
+|+++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~~i~---------~~~q~L~~~g~~L~d~~tL~~~~i~~g------~ 65 (76)
T 1ndd_A 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG------S 65 (76)
T ss_dssp EEEEECTTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBGGGGTCCTT------C
T ss_pred EEEEECCCCCEE-EEEECCCChHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence 578888889654 79999999999999999988 55 999999999999999999999999998 6
Q ss_pred EEEEEEcCCc
Q 033473 86 IMHVVVQPSL 95 (118)
Q Consensus 86 t~hlv~~~~~ 95 (118)
++|++++..+
T Consensus 66 ~i~l~~~~~G 75 (76)
T 1ndd_A 66 VLHLVLALRG 75 (76)
T ss_dssp EEEEEECCC-
T ss_pred EEEEEEeCCC
Confidence 8999988765
No 34
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=1.8e-17 Score=108.86 Aligned_cols=79 Identities=19% Similarity=0.340 Sum_probs=69.1
Q ss_pred CCCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CcccccCCCCCCC
Q 033473 2 PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEV 80 (118)
Q Consensus 2 ~~~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~ 80 (118)
++++.+.|.++..+|+. +.+++++++||.+||++|++.. +++|||||+||.|+|+ .+|++|+|.+|
T Consensus 3 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i~~~~----------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g-- 69 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFPGQ----------ESQMKLIYQGRLLQDPARTLSSLNITNN-- 69 (95)
T ss_dssp CCCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSSST----------TTTCEEEETTEECCCSSCBTTTTTCCTT--
T ss_pred CCCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHhhC----------cCcEEEEECCEEccCCcCCHHHcCCCCC--
Confidence 34678999999999955 4799999999999999999872 7899999999999999 99999999999
Q ss_pred CCceEEEEEEEcCCccc
Q 033473 81 PGGVIIMHVVVQPSLAK 97 (118)
Q Consensus 81 ~~~~~t~hlv~~~~~~~ 97 (118)
.+|||+++.+...
T Consensus 70 ----~~i~l~~~~~~~~ 82 (95)
T 1wia_A 70 ----CVIHCHRSPPGAA 82 (95)
T ss_dssp ----EEEEEECCCCCCC
T ss_pred ----CEEEEEECCCCCC
Confidence 7899998865543
No 35
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=9.9e-18 Score=111.92 Aligned_cols=77 Identities=23% Similarity=0.417 Sum_probs=68.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
...+.|.++..+| .+ .+++++++||.+||++|++. +| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 20 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~ygI~~g--- 85 (100)
T 1yqb_A 20 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQRFKAH---------PDQLVLIFAGKILKDPDSLAQCGVRDG--- 85 (100)
T ss_dssp TTEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBHHHHTCCTT---
T ss_pred CCeEEEEEEcCCC-cE-EEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHCCCCCC---
Confidence 4679999999998 44 79999999999999999998 55 999999999999999999999999998
Q ss_pred CceEEEEEEEcCCccc
Q 033473 82 GGVIIMHVVVQPSLAK 97 (118)
Q Consensus 82 ~~~~t~hlv~~~~~~~ 97 (118)
.++||+++..+++
T Consensus 86 ---stI~l~~r~~~~p 98 (100)
T 1yqb_A 86 ---LTVHLVIKRQHRA 98 (100)
T ss_dssp ---CEEEEEECCCCSC
T ss_pred ---CEEEEEEcCCCCC
Confidence 6899998876653
No 36
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6e-18 Score=113.98 Aligned_cols=76 Identities=24% Similarity=0.455 Sum_probs=64.2
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 033473 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (118)
++|.++..+|+.+ .+++++++||.+||++|++... +| +++|||||+||+|+|+.+|++|+|.+| .+
T Consensus 2 m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~g-----ip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g------~~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKV-PLDLEPSNTILETKTKLAQSIS-----CE--ESQIKLIYSGKVLQDSKTVSECGLKDG------DQ 67 (106)
T ss_dssp -CEEEECTTCCEE-EECCCTTSBHHHHHHHHHHTTT-----SC--GGGCEEEETTEECCTTSBTTTTTCCTT------CE
T ss_pred EEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHC-----CC--hhhEEEEECCEECCCcCCHHHcCCCCC------CE
Confidence 5688888899654 7999999999999999999832 33 999999999999999999999999999 68
Q ss_pred EEEEEcCCcc
Q 033473 87 MHVVVQPSLA 96 (118)
Q Consensus 87 ~hlv~~~~~~ 96 (118)
+||+++.+.+
T Consensus 68 i~lv~~~~~~ 77 (106)
T 3m62_B 68 VVFMVSQKKS 77 (106)
T ss_dssp EEEECCC---
T ss_pred EEEEEcCCCC
Confidence 9999886544
No 37
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.74 E-value=9.4e-18 Score=111.20 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=68.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.+.|.++..+|+.+ .+++++++||.+||++|+++ +| +++|||||+|+.|+|+.||++|+|.+|
T Consensus 20 ~~m~I~Vk~~~g~~~-~l~v~~~~tv~~lK~~i~~~~gip---------~~~qrLif~Gk~L~d~~tl~dy~i~~g---- 85 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE---- 85 (97)
T ss_dssp CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCHHHHTCCTT----
T ss_pred CcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------hhhEEEEECCeEcCCCCCHHHCCCCCC----
Confidence 458999999999665 79999999999999999998 55 999999999999999999999999999
Q ss_pred ceEEEEEEEcCCc
Q 033473 83 GVIIMHVVVQPSL 95 (118)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (118)
.++||+++..+
T Consensus 86 --~~I~l~~~~~G 96 (97)
T 1wyw_B 86 --DVIEVYQEQTG 96 (97)
T ss_dssp --CEEEEEESSSC
T ss_pred --CEEEEEEecCC
Confidence 67999988765
No 38
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.73 E-value=2.4e-17 Score=102.74 Aligned_cols=72 Identities=24% Similarity=0.386 Sum_probs=64.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|+++..+|+.+ .+++++++||.+||++|++. +| +++|||+|.|+.|+|+.+|++|+|.+| .
T Consensus 2 ~i~vk~~~g~~~-~i~v~~~~tv~~lK~~i~~~~~i~---------~~~q~L~~~g~~L~d~~tL~~~~i~~g------~ 65 (76)
T 3a9j_A 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQRE------S 65 (76)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTGGGTCCTT------C
T ss_pred EEEEEcCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEEECCeECCCCCcHHHcCCCCC------C
Confidence 578888888554 79999999999999999998 55 999999999999999999999999998 6
Q ss_pred EEEEEEcCCc
Q 033473 86 IMHVVVQPSL 95 (118)
Q Consensus 86 t~hlv~~~~~ 95 (118)
++|++++..+
T Consensus 66 ~i~l~~~~~G 75 (76)
T 3a9j_A 66 TLHLVLRLRG 75 (76)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEeCCC
Confidence 8999988765
No 39
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2.1e-17 Score=108.93 Aligned_cols=78 Identities=27% Similarity=0.364 Sum_probs=65.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
.|.++..+|+.+ .+++++++||.+||++|++.+. .+.+| +++|||||+||.|+|+.+|++|+|.+| .++
T Consensus 2 ~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------~~i 70 (95)
T 1uel_A 2 QVTLKTLQQQTF-KIDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEK------NFV 70 (95)
T ss_dssp EEEEEETTCCEE-EEECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSS------SEE
T ss_pred EEEEEeCCCCEE-EEEECCCCHHHHHHHHHHhhcc--cCCCC--hhhEEEEECCEECCCcCcHHHCCCCCC------CEE
Confidence 578888889655 7999999999999999998731 01233 999999999999999999999999998 679
Q ss_pred EEEEcCCcc
Q 033473 88 HVVVQPSLA 96 (118)
Q Consensus 88 hlv~~~~~~ 96 (118)
||+++.+.+
T Consensus 71 ~l~~~~~~~ 79 (95)
T 1uel_A 71 VVMVTKPKA 79 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEeCCCC
Confidence 998876544
No 40
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.73 E-value=2.4e-17 Score=111.82 Aligned_cols=75 Identities=23% Similarity=0.363 Sum_probs=68.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
..++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 34 ~~m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~~gI~~g---- 99 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 99 (111)
T ss_dssp GCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTTTTTCCTT----
T ss_pred ccEEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHHhCCC---------hHHEEEEECCEECCCCCcHHHCCCCCC----
Confidence 468999999999665 79999999999999999998 55 999999999999999999999999998
Q ss_pred ceEEEEEEEcCCc
Q 033473 83 GVIIMHVVVQPSL 95 (118)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (118)
.++||+++..+
T Consensus 100 --s~I~l~~rl~G 110 (111)
T 3vdz_A 100 --STLHLVLRLRG 110 (111)
T ss_dssp --CEEEEEECCCC
T ss_pred --CEEEEEEecCC
Confidence 68999998765
No 41
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2e-17 Score=107.67 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=63.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
...|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.||++|+|.+|
T Consensus 9 ~~~i~v~~~~G~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g----- 73 (88)
T 1sif_A 9 GLQLFIKTLTGKTF-TVEMEPSDTIENLKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 73 (88)
T ss_dssp -CEEEEEETTSCEE-EEECCTTSBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBSGGGTCCTT-----
T ss_pred ceEEEEEeCCCCEE-EEEECCCChHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCcHHHcCCCCC-----
Confidence 35788899999654 79999999999999999998 55 999999999999999999999999998
Q ss_pred eEEEEEEEcCCcc
Q 033473 84 VIIMHVVVQPSLA 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
.++||+++..++
T Consensus 74 -~~i~l~~r~~GG 85 (88)
T 1sif_A 74 -STLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEC-----
T ss_pred -CEEEEEEeCCCC
Confidence 689999887765
No 42
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1e-17 Score=110.18 Aligned_cols=78 Identities=24% Similarity=0.291 Sum_probs=67.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
++.++|.++.. |..+ .+++++++||.+||++|++.. .+| +++|||||.|+.|+|+.+|++|+|.+|
T Consensus 15 ~~~m~i~Vk~~-g~~~-~~~v~~~~TV~~LK~~I~~~~-----gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g----- 80 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCH-EFFLAENSNVRRFKKQISKYL-----HCN--ADRLVLIFTGKILRDQDILSQRGILDG----- 80 (96)
T ss_dssp SCEEEEEEECS-SSEE-EEEEETTCCHHHHHHHHHHHT-----CSC--TTTBCCEETTEECCTTSCHHHHTCCTT-----
T ss_pred CCcEEEEEEEC-CeEE-EEEECCCCCHHHHHHHHHHHh-----CCC--HHHEEEEECCEECCCcCCHHHCCCCCC-----
Confidence 46788988888 7554 799999999999999999982 122 999999999999999999999999999
Q ss_pred eEEEEEEEcCCcc
Q 033473 84 VIIMHVVVQPSLA 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
.++||+++..++
T Consensus 81 -~~i~l~~~~~~g 92 (96)
T 1wx8_A 81 -STVHVVVRSHSG 92 (96)
T ss_dssp -EEEECCBCCSSC
T ss_pred -CEEEEEEeCCCC
Confidence 789999887664
No 43
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.72 E-value=4.3e-17 Score=112.57 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=62.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCC-CC
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PG 82 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-~~ 82 (118)
.+.|+++- ++.+..+++++++||.+||++|++. +| +++|||||+||+|+|++||++|||..+.. +.
T Consensus 2 ~vFl~Ikr--~ktTI~ldve~sdTV~~lK~kI~~~~giP---------p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q 70 (118)
T 4ajy_B 2 DVFLMIRR--HKTTIFTDAKESSTVFELKRIVEGILKRP---------PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQ 70 (118)
T ss_dssp EEEEEEEE--BTEEEEEEEETTSBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTTTTTCCGGGSBTT
T ss_pred ceEEEEec--CCEEEEEEcCCCChHHHHHHHHHHHHCCC---------HHHeEEEeCCeECCCcCCHHHcCCCcCcccCC
Confidence 35555544 4444578999999999999999988 55 99999999999999999999999998322 22
Q ss_pred ceEEEEEEEcC
Q 033473 83 GVIIMHVVVQP 93 (118)
Q Consensus 83 ~~~t~hlv~~~ 93 (118)
...|+||++|.
T Consensus 71 ~~atl~Lvlr~ 81 (118)
T 4ajy_B 71 APATVGLAFRA 81 (118)
T ss_dssp BCEEEEEEECC
T ss_pred CCCEEEEEEec
Confidence 23899999996
No 44
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=5.3e-17 Score=112.56 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=65.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
+..+.|.++.. |.. +.+++++++||.+||++|++. +| +++|||||+||+|+|+.+|++|+|.+|
T Consensus 30 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~dygI~~g--- 95 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEK-EEFAVPENSSVQQFKEAISKRFKSQ---------TDQLVLIFAGKILKDQDTLIQHGIHDG--- 95 (125)
T ss_dssp CCCEEEEEECS-SCE-EEEEECTTCCHHHHHHHHHHHHCSC---------SSSEEEEETTEEESTTSCGGGTTCSSS---
T ss_pred CCcEEEEEEeC-CeE-EEEEECCCCcHHHHHHHHHHHHCcC---------cceEEEEECCEEcCCCCCHHHcCCCCC---
Confidence 45688999988 755 479999999999999999998 55 999999999999999999999999998
Q ss_pred CceEEEEEEEcCCcccc
Q 033473 82 GGVIIMHVVVQPSLAKT 98 (118)
Q Consensus 82 ~~~~t~hlv~~~~~~~~ 98 (118)
.+|||+.+..++..
T Consensus 96 ---stI~lv~~~~gg~~ 109 (125)
T 1j8c_A 96 ---LTVHLVIKRDPNSS 109 (125)
T ss_dssp ---EEEEEEEC------
T ss_pred ---CEEEEEeccCCCCC
Confidence 78999998766543
No 45
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-17 Score=108.81 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=66.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
...+.|.++.. |.. +.+++++++||++||++|++. +| +++|||||+|+.|+|+.+|++|+|.+|
T Consensus 23 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gI~~g--- 88 (101)
T 2klc_A 23 PKIMKVTVKTP-KEK-EEFAVPENSSVQQFKEEISKRFKSH---------TDQLVLIFAGKILKDQDTLSQHGIHDG--- 88 (101)
T ss_dssp CCCEEEEEECS-SCE-EEEEECSCCCHHHHHHHHHHHHTCC---------GGGEEEEETTEEECTTCCTGGGTCCTT---
T ss_pred CCeEEEEEEeC-CcE-EEEEECCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHcCCCCC---
Confidence 36688888888 644 479999999999999999998 55 999999999999999999999999998
Q ss_pred CceEEEEEEEcCCcc
Q 033473 82 GGVIIMHVVVQPSLA 96 (118)
Q Consensus 82 ~~~~t~hlv~~~~~~ 96 (118)
.++||+.++++.
T Consensus 89 ---~~I~l~~~~~~~ 100 (101)
T 2klc_A 89 ---LTVHLVIKTQNR 100 (101)
T ss_dssp ---CEEEEEECCSSC
T ss_pred ---CEEEEEEcCCCC
Confidence 689999886543
No 46
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=6.5e-17 Score=108.48 Aligned_cols=78 Identities=23% Similarity=0.409 Sum_probs=69.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
...+.|+++..+| .+ .+++++++||.+||++|++. +| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 15 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gi~~g--- 80 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQRFKAH---------PDQLVLIFAGKILKDPDSLAQCGVRDG--- 80 (106)
T ss_dssp SSEEEEEEECSSC-EE-EEEEETTCCHHHHHHHHHHHHTCC---------TTTEEEEETTEECCTTSCHHHHTCCTT---
T ss_pred CceEEEEEEeCCC-cE-EEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHcCCCCC---
Confidence 3668999999888 44 79999999999999999988 55 999999999999999999999999998
Q ss_pred CceEEEEEEEcCCcccc
Q 033473 82 GGVIIMHVVVQPSLAKT 98 (118)
Q Consensus 82 ~~~~t~hlv~~~~~~~~ 98 (118)
.+|||+++..++..
T Consensus 81 ---~~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 81 ---LTVHLVIKRQHRAM 94 (106)
T ss_dssp ---EEEEEEECCCCCSC
T ss_pred ---CEEEEEEcCCCCCC
Confidence 78999998776643
No 47
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.5e-17 Score=112.67 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=67.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCC------CCceeEEEecCeecC-CCCcccccC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPK------AVTEIKLISSGKILE-NNKTVGQCK 74 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~------~~~~qrLI~~Gk~L~-D~~tL~~~~ 74 (118)
..+..|.++..+|+.+ +++|++++||++||++|++. +|..-+.-+. ..++|||||+|++|. |++||++|+
T Consensus 5 ~~~M~I~Vk~l~g~~~-~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVM-PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCcEEEEEEecCCCEE-EEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 4678999999999665 79999999999999999998 3300000000 025789999999995 679999999
Q ss_pred CCCCCCCCceEEEEEEEcCCcc
Q 033473 75 IPYGEVPGGVIIMHVVVQPSLA 96 (118)
Q Consensus 75 i~~g~~~~~~~t~hlv~~~~~~ 96 (118)
|.+| .++|+|.+..+.
T Consensus 84 I~~g------~~l~lv~~lr~~ 99 (105)
T 1v2y_A 84 IRNR------DEVSFIKKLGQK 99 (105)
T ss_dssp CCSS------EEEEEEECSCSC
T ss_pred CCCC------CEEEEEehhccC
Confidence 9999 789999887655
No 48
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.71 E-value=3.5e-17 Score=111.46 Aligned_cols=81 Identities=16% Similarity=0.285 Sum_probs=69.4
Q ss_pred ceEEEEEEeCC----------CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccC
Q 033473 5 ELIDIKFRLYD----------GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK 74 (118)
Q Consensus 5 ~~i~l~~~~~~----------g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 74 (118)
..|+|.+++.+ | ..+.+++++++||.+||++|++.. .+| +++|||||+|+.|+|+.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G-~~~~l~v~~~~TV~~LK~~I~~~~-----gip--~~~QrL~~~Gk~L~D~~tL~~y~ 95 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNG-QGLVFTLPLTDQVSVIKVKIHEAT-----GMP--AGKQKLQYEGIFIKDSNSLAYYN 95 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSS-EEEEEEECSCSBTHHHHHHHHHHS-----SCC--TTTEEEEETTEEECTTSBHHHHT
T ss_pred CCEEEEEEcCCCccccccccCC-eEEEEEECCCCCHHHHHHHHHHHH-----CCC--hHHEEEEECCEECCCCCCHHHCC
Confidence 46888888864 4 345799999999999999999982 223 99999999999999999999999
Q ss_pred CCCCCCCCceEEEEEEEcCCccccc
Q 033473 75 IPYGEVPGGVIIMHVVVQPSLAKTK 99 (118)
Q Consensus 75 i~~g~~~~~~~t~hlv~~~~~~~~k 99 (118)
|.+| .++||+++..+++++
T Consensus 96 i~~g------~~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 96 MASG------AVIHLALKERSGPSS 114 (115)
T ss_dssp CCSS------CEEEEEECCCSCCSC
T ss_pred CCCC------CEEEEEEEcCCCCCC
Confidence 9998 689999998887543
No 49
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.4e-17 Score=109.49 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=67.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
..+.|.++..+|+. +.+++++++||.+||++|++.. .+| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 22 ~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~~~-----gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------ 87 (106)
T 1ttn_A 22 YECQLRLRLSTGKD-LKLVVRSTDTVFHMKRRLHAAE-----GVE--PGSQRWFFSGRPLTDKMKFEELKIPKD------ 87 (106)
T ss_dssp CSEEEEEEETTTEE-EEEEECTTSHHHHHHHHHHHTT-----CCC--STTCEEEETTEECCTTSHHHHCCCSSS------
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHHHH-----CcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence 45889999999955 4799999999999999999882 122 999999999999999999999999998
Q ss_pred EEEEEEEcCCcc
Q 033473 85 IIMHVVVQPSLA 96 (118)
Q Consensus 85 ~t~hlv~~~~~~ 96 (118)
.++||+++.+.+
T Consensus 88 ~ti~lv~~~~~~ 99 (106)
T 1ttn_A 88 YVVQVIVSQPVQ 99 (106)
T ss_dssp CEEEEECCCSSC
T ss_pred CEEEEEEeCCCC
Confidence 689999876544
No 50
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.71 E-value=3e-17 Score=113.36 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=60.0
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCC-CCceE
Q 033473 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGVI 85 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-~~~~~ 85 (118)
+.|+++ .|+....+++++++||.+||++|++. +++| +++|||||+||+|+|++||++|||.+... +...+
T Consensus 3 mfl~ir--~~ktti~lev~~sdTV~~lK~kI~~~-----egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~s 73 (118)
T 2fnj_B 3 VFLMIR--RHKTTIFTDAKESSTVFELKRIVEGI-----LKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPA 73 (118)
T ss_dssp EEEEEE--EBTEEEEEEEETTSBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCE
T ss_pred EEEEEe--cCCEEEEEEeCCcChHHHHHHHHHHH-----hCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCC
Confidence 455555 44454579999999999999999988 2233 99999999999999999999999993100 00118
Q ss_pred EEEEEEc
Q 033473 86 IMHVVVQ 92 (118)
Q Consensus 86 t~hlv~~ 92 (118)
|+||++|
T Consensus 74 tL~L~lr 80 (118)
T 2fnj_B 74 TVGLAFR 80 (118)
T ss_dssp EEEEEEB
T ss_pred EEEEEec
Confidence 9999999
No 51
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.70 E-value=1.3e-16 Score=105.33 Aligned_cols=77 Identities=22% Similarity=0.370 Sum_probs=65.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
+|+++..+|..+ .+++++++||.+||++|++... +| +++|||+|+||.|+|+.+|++|+|.+| .++
T Consensus 2 ~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~g-----i~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~i 67 (98)
T 1yx5_B 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEG-----IP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (98)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHTC-----CC--GGGEEEEETTEECCTTSBTGGGTCCTT------CEE
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHC-----cC--hhhEEEEECCEECCCCCCHHHcCCCCC------CEE
Confidence 578888889554 7999999999999999999821 22 999999999999999999999999998 689
Q ss_pred EEEEcCCcccc
Q 033473 88 HVVVQPSLAKT 98 (118)
Q Consensus 88 hlv~~~~~~~~ 98 (118)
||+++..++..
T Consensus 68 ~l~~~~~gG~~ 78 (98)
T 1yx5_B 68 HLVLRLRGGRD 78 (98)
T ss_dssp EEEECCCCC--
T ss_pred EEEEeCCCCCc
Confidence 99999876543
No 52
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=6.9e-17 Score=109.24 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=68.4
Q ss_pred ceEEEEEEeC---CCCeeeeEEeCC-cchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCC
Q 033473 5 ELIDIKFRLY---DGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (118)
Q Consensus 5 ~~i~l~~~~~---~g~~~~~~~v~~-~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (118)
..++|.+++. +|+. +.+++++ ++||.+||++|++.. .+| +++|||+|+|++|+|+.+|++|+|.+|
T Consensus 26 ~~i~i~Vk~~~~~~g~~-~~l~v~~l~~TV~~LK~~I~~~~-----gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g-- 95 (111)
T 1we6_A 26 GPATIRVSKPNENDGQF-MEITVQSLSENVGSLKEKIAGEI-----QIP--ANKQKLSGKAGFLKDNMSLAHYNVGAG-- 95 (111)
T ss_dssp SCEEEEECCTTCSSSCC-EEEEESCSSSBHHHHHHHHHHHT-----TCC--TTTSEEECSSSBCCTTSBTTTTTCSSS--
T ss_pred CcEEEEEEecccCCCcE-EEEEecCCCCcHHHHHHHHHHHH-----CCC--HHHeEEEECCEECCCCCcHHHCCCCCC--
Confidence 4588999988 7754 4799998 999999999999982 223 999999999999999999999999998
Q ss_pred CCceEEEEEEEcCCccc
Q 033473 81 PGGVIIMHVVVQPSLAK 97 (118)
Q Consensus 81 ~~~~~t~hlv~~~~~~~ 97 (118)
.++||+++..+++
T Consensus 96 ----~~l~l~~r~~GGk 108 (111)
T 1we6_A 96 ----EILTLSLRERSGP 108 (111)
T ss_dssp ----CEEEEECSSCCSS
T ss_pred ----CEEEEEEEcCCCC
Confidence 6899999987763
No 53
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.4e-17 Score=110.28 Aligned_cols=72 Identities=29% Similarity=0.368 Sum_probs=62.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
..+.|+++. +|+. +.+++++++||++||++|++. +| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 27 m~i~I~Vk~-~g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~~gI~~g---- 91 (101)
T 3m63_B 27 MSLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINKANGIP---------VANQRLIYSGKILKDDQTVESYHIQDG---- 91 (101)
T ss_dssp --CCEEEEC-SSCC-CCBCCCTTSBHHHHHHHHHHHHSCC---------STTCCEEETTEECCTTSBTTTTTCCTT----
T ss_pred cEEEEEEEE-CCEE-EEEEeCCCCCHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCcCcHHHCCCCCC----
Confidence 346777776 6745 479999999999999999998 55 999999999999999999999999999
Q ss_pred ceEEEEEEEcC
Q 033473 83 GVIIMHVVVQP 93 (118)
Q Consensus 83 ~~~t~hlv~~~ 93 (118)
.++||+.+.
T Consensus 92 --~tI~lv~~~ 100 (101)
T 3m63_B 92 --HSVHLVKSQ 100 (101)
T ss_dssp --EEEEECCCC
T ss_pred --CEEEEEeCC
Confidence 789998764
No 54
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.69 E-value=5.3e-17 Score=106.80 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=62.8
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
..+.|.++. |+. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 18 ~~m~I~Vk~--g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~y~I~~g---- 81 (93)
T 2l7r_A 18 GSMQLFVRA--QEL-HTFEVTGQETVAQIKAHVASLEGIA---------PEDQVVLLAGAPLEDEATLGQCGVEAL---- 81 (93)
T ss_dssp --CEEEEES--SSE-EEEECCSSCBHHHHHHHHHHHHTCC---------GGGCEEEETTEECCTTSBHHHHTCCSS----
T ss_pred CcEEEEEEC--CCE-EEEEeCCCCcHHHHHHHHHHHhCcC---------hhHEEEEECCEECCCCCcHHHCCCCCC----
Confidence 346666666 644 479999999999999999998 55 999999999999999999999999998
Q ss_pred ceEEEEEEEcCCc
Q 033473 83 GVIIMHVVVQPSL 95 (118)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (118)
.++||+++..+
T Consensus 82 --stI~lv~rl~G 92 (93)
T 2l7r_A 82 --TTLEVAGRMLG 92 (93)
T ss_dssp --CEEEEECCCCC
T ss_pred --CEEEEEEecCC
Confidence 68999988765
No 55
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=1.1e-16 Score=106.81 Aligned_cols=81 Identities=9% Similarity=0.084 Sum_probs=66.6
Q ss_pred ceEEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CcccccCCCCCCC
Q 033473 5 ELIDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEV 80 (118)
Q Consensus 5 ~~i~l~~~~~~g~---~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~ 80 (118)
..+.|+++..+|. ..+.+++++++||.+||++|++.. .+| +++|||||+|+.|+|+ .||++|+|.+|
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~-----gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g-- 76 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELES-----GVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDG-- 76 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHT-----CCC--GGGBCEEETTEEECCSSSBHHHHTCCTT--
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHH-----CcC--hHHeEEEECCEECCCCcccHHHCCCCCC--
Confidence 4577788876553 455799999999999999999982 122 9999999999999887 79999999999
Q ss_pred CCceEEEEEEEcCCcccc
Q 033473 81 PGGVIIMHVVVQPSLAKT 98 (118)
Q Consensus 81 ~~~~~t~hlv~~~~~~~~ 98 (118)
.++||+.+..++..
T Consensus 77 ----~~l~l~~~~~gg~~ 90 (102)
T 1v5o_A 77 ----DMVVLLQKDNVGLR 90 (102)
T ss_dssp ----EEEEECBCCCCCCS
T ss_pred ----CEEEEEECCCCCCC
Confidence 78999988765543
No 56
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.6e-16 Score=108.34 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=68.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
...|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 9 ~~~i~vk~l~G~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~ygI~~g----- 73 (114)
T 2kdi_A 9 EFQIFAKTLTGKTI-TLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIWAGKQLEDGRTLSDYNIQRE----- 73 (114)
T ss_dssp CCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTTTTTCCSS-----
T ss_pred cEEEEEEeCCCcEE-EEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCcHHHCCCCCC-----
Confidence 46788888999554 79999999999999999998 55 999999999999999999999999998
Q ss_pred eEEEEEEEcCCccc
Q 033473 84 VIIMHVVVQPSLAK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
.++||+++..++.
T Consensus 74 -stI~l~~~~~GG~ 86 (114)
T 2kdi_A 74 -STLHLVLRLRGGS 86 (114)
T ss_dssp -CEEEEEECCCSSC
T ss_pred -CEEEEEEEcCCCc
Confidence 6899999987663
No 57
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.69 E-value=1.5e-16 Score=112.71 Aligned_cols=76 Identities=18% Similarity=0.130 Sum_probs=65.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.||++|+|.+|
T Consensus 81 ~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~q~L~~~G~~L~d~~tL~~y~i~~g----- 145 (159)
T 3rt3_B 81 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGLEGVQ---------DDLFWLTFEGKPLEDQLPLGEYGLKPL----- 145 (159)
T ss_dssp CEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTCCTT-----
T ss_pred cEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHHHCCC---------HHHEEEEECCeecCCCCCHHHcCCCCC-----
Confidence 45677788888654 79999999999999999988 55 999999999999999999999999999
Q ss_pred eEEEEEEEcCCccc
Q 033473 84 VIIMHVVVQPSLAK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
.++||+++..++.
T Consensus 146 -~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 146 -STVFMNLRLRGGG 158 (159)
T ss_dssp -CEEEEEECCC---
T ss_pred -CEEEEEEecCCCC
Confidence 7899999987764
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.68 E-value=2.5e-16 Score=106.61 Aligned_cols=75 Identities=23% Similarity=0.363 Sum_probs=67.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
..+.|+++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+||.|+|+.+|++|+|.+|
T Consensus 34 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gI~~g---- 99 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 99 (111)
T ss_dssp SCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------TTTEEEEETTEECCSSCBTTTTTCCTT----
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHHHCcC---------cccEEEEECCEECCCCCcHHHcCCCCC----
Confidence 468899999889554 79999999999999999998 55 999999999999999999999999998
Q ss_pred ceEEEEEEEcCCc
Q 033473 83 GVIIMHVVVQPSL 95 (118)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (118)
.++||+++..+
T Consensus 100 --s~I~l~~rl~G 110 (111)
T 2ojr_A 100 --STLHLVLRLRG 110 (111)
T ss_dssp --CEEEEEECCCC
T ss_pred --CEEEEEEeCCC
Confidence 68999988765
No 59
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.68 E-value=1.9e-16 Score=114.72 Aligned_cols=78 Identities=24% Similarity=0.355 Sum_probs=66.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
+|.+++.+|+.+ .+++++++||.+||++|++.. .+| +++|||||+|+.|+|+.+|++|+|.+| .++
T Consensus 2 qI~Vk~~~Gk~~-~l~v~~~~TV~~LK~~I~~~~-----gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~g------stI 67 (169)
T 3l0w_B 2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (169)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHH-----CCC--TTTEEEEETTEECCTTSBGGGGTCCTT------CEE
T ss_pred EEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHHH-----CcC--HHHEEEEECCccccCcCcHHHcCCCCC------CEE
Confidence 578888999665 799999999999999999982 122 999999999999999999999999999 689
Q ss_pred EEEEcCCccccc
Q 033473 88 HVVVQPSLAKTK 99 (118)
Q Consensus 88 hlv~~~~~~~~k 99 (118)
||+++..++.+.
T Consensus 68 ~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 68 HLVLRLRGGGGE 79 (169)
T ss_dssp EEEECCCC---C
T ss_pred EEEEEecccccc
Confidence 999998877543
No 60
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.7e-16 Score=106.92 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=65.6
Q ss_pred ceEEEEEEeCCC---CeeeeEEeCC---------cchHHHHHHHHHhhCCCCCccCCCCCce-eEEEecCeecCCCCccc
Q 033473 5 ELIDIKFRLYDG---SDIGPFRYSS---------ASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISSGKILENNKTVG 71 (118)
Q Consensus 5 ~~i~l~~~~~~g---~~~~~~~v~~---------~~tV~~LK~~I~~~~p~~~e~~p~~~~~-qrLI~~Gk~L~D~~tL~ 71 (118)
..+.|.++..+| ..+ .++|++ ++||.+||++|++..| +.+| +++ |||||+||.|+|+.+|+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~-~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~---~gip--~~~~qrLi~~Gk~L~D~~tL~ 84 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKS-ILQLPETELGEYSLGGYSISFLKQLIAGKLQ---ESVP--DPELIDLIYCGRKLKDDQTLD 84 (107)
T ss_dssp CSCCEEEEETTCTTSCCE-EECCCCCSSCSSCCCCCBHHHHHHHHHHHCT---TTCC--CSSSEEEEETTEECCTTCBHH
T ss_pred CceEEEEEeCCCCCccEE-EEEecCccccccCcccCCHHHHHHHHHHHhc---cCCC--hhhcEEEEECCeECCCCCcHH
Confidence 457888888887 444 678544 4999999999999864 1344 899 99999999999999999
Q ss_pred ccCCCCCCCCCceEEEEEEEcCCcc
Q 033473 72 QCKIPYGEVPGGVIIMHVVVQPSLA 96 (118)
Q Consensus 72 ~~~i~~g~~~~~~~t~hlv~~~~~~ 96 (118)
+|+|.+| .++||+.++++.
T Consensus 85 ~y~i~~g------~~i~lv~~~~~~ 103 (107)
T 1x1m_A 85 FYGIQPG------STVHVLRKSWSG 103 (107)
T ss_dssp HHTCCTT------CEEEEEESSCCS
T ss_pred HcCCCCC------CEEEEEeCCCCC
Confidence 9999998 689999886543
No 61
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.9e-16 Score=105.05 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=63.8
Q ss_pred CceEEEEEEeCCCCeee-eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIG-PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~-~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
++.++|+++. .| ..+ .+++++++||.+||++|++.. .+| +++|||||.||+|+|+ +|++|+|.+|
T Consensus 5 ~~~m~i~Vk~-~g-~~~~~l~v~~~~TV~~lK~~I~~~t-----gip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g---- 70 (96)
T 1wgg_A 5 SSGYSVTVKW-GK-EKFEGVELNTDEPPMVFKAQLFALT-----GVQ--PARQKVMVKGGTLKDD-DWGNIKMKNG---- 70 (96)
T ss_dssp CCEEEEEEEE-TT-EEEEEEEEESSSCHHHHHHHHHHHT-----CCC--TTTSCCEETTEECCSS-CCCSCCCCSS----
T ss_pred CcEEEEEEEE-CC-EEEEEEEECCCCcHHHHHHHHHHHH-----CcC--HHHeEEEECCcCCCCC-CHHHCCCCCC----
Confidence 5778888886 56 455 599999999999999999981 233 9999999999999999 9999999998
Q ss_pred ceEEEEEEEcCC
Q 033473 83 GVIIMHVVVQPS 94 (118)
Q Consensus 83 ~~~t~hlv~~~~ 94 (118)
.++||+..+.
T Consensus 71 --~~i~l~~~~~ 80 (96)
T 1wgg_A 71 --MTVLMMGSAD 80 (96)
T ss_dssp --CEEECCCCCC
T ss_pred --CEEEEEecch
Confidence 6799987665
No 62
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.48 E-value=5.8e-18 Score=106.33 Aligned_cols=74 Identities=26% Similarity=0.409 Sum_probs=63.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
.|.++..+|+.+ .+++++++||++||++|++.. .+| +++|||+|+|+.|+|+.+|++|+|.+| .++
T Consensus 2 ~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~-----gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g------~~i 67 (76)
T 3b1l_X 2 IVFVRFNSSYGF-PVEVDSDTSILQLKEVVAKQQ-----GVP--ADQLRVIFAGKELPNHLTVQNCDLEQQ------SIV 67 (76)
Confidence 466777888554 799999999999999999882 122 999999999999999999999999998 789
Q ss_pred EEEEcCCc
Q 033473 88 HVVVQPSL 95 (118)
Q Consensus 88 hlv~~~~~ 95 (118)
|+++++.+
T Consensus 68 ~l~~rlrg 75 (76)
T 3b1l_X 68 HIVQRPRR 75 (76)
Confidence 99988654
No 63
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=5.9e-16 Score=101.05 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=63.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCc-----chHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCC-CCcccccCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSA-----STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN-NKTVGQCKIPY 77 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~-----~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D-~~tL~~~~i~~ 77 (118)
++.+.|+++.. |.. +.++++++ +||.+||++|++.. .+| +++|||||.|+.|+| +.+|++|+|.+
T Consensus 5 ~~~~~v~Vk~~-~~~-~~i~v~~~~~~~~~TV~~LK~~i~~~~-----gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~ 75 (92)
T 1wxv_A 5 SSGLTVTVTHS-NEK-HDLHVTSQQGSSEPVVQDLAQVVEEVI-----GVP--QSFQKLIFKGKSLKEMETPLSALGIQD 75 (92)
T ss_dssp CSSEEEEEECS-SSE-EEEEECCCSSSSSCBHHHHHHHHHHHT-----CCC--TTTCEEEETTEEECCSSSBHHHHTCCS
T ss_pred CCeEEEEEEEC-CEE-EEEEECCCcCcccCcHHHHHHHHHHHH-----CcC--HHHEEEEECCeecCCCcccHHHCCCCC
Confidence 46688888874 534 47999995 99999999999882 223 999999999999988 66999999999
Q ss_pred CCCCCceEEEEEEEcCCcc
Q 033473 78 GEVPGGVIIMHVVVQPSLA 96 (118)
Q Consensus 78 g~~~~~~~t~hlv~~~~~~ 96 (118)
| .++||+.++..+
T Consensus 76 g------~~i~l~~~~~~~ 88 (92)
T 1wxv_A 76 G------CRVMLIGKKNSG 88 (92)
T ss_dssp S------EEEEEESCCSCS
T ss_pred C------CEEEEEecCCCC
Confidence 8 789998765443
No 64
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=9.5e-16 Score=99.33 Aligned_cols=65 Identities=25% Similarity=0.293 Sum_probs=57.2
Q ss_pred eCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 033473 13 LYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (118)
Q Consensus 13 ~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
..+|+. +.+++++++||.+||++|++. +| +++|||+|+||.|+|+.+|++|+|.+| .++||+
T Consensus 18 ~~~g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~l~l~ 81 (85)
T 2kd0_A 18 KFGGKS-IPLSVSPDCTVKDLKSQLQPITNVL---------PRGQKLIFKGKVLVETSTLKQSDVGSG------AKLMLM 81 (85)
T ss_dssp EETTEE-EEEEECTTSBHHHHHHHHHHHHCCC---------TTTCEEEETTEECCTTCBTTTTTCCTT------EEEEEE
T ss_pred EECCEE-EEEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCeECCCcCCHHHCCCCCC------CEEEEE
Confidence 346644 479999999999999999988 55 999999999999999999999999999 789988
Q ss_pred EcC
Q 033473 91 VQP 93 (118)
Q Consensus 91 ~~~ 93 (118)
..+
T Consensus 82 ~s~ 84 (85)
T 2kd0_A 82 ASQ 84 (85)
T ss_dssp CCC
T ss_pred EeC
Confidence 643
No 65
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.64 E-value=5e-16 Score=114.78 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=68.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.++|.+++.+|+.+ .+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+|.+|
T Consensus 105 eMqI~VKtl~Gkt~-~l~V~~s~TV~~LK~kI~~~~gIp---------~~~QrLi~~Gk~L~D~~tL~dygI~~g----- 169 (189)
T 3q3f_A 105 GGQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 169 (189)
T ss_dssp CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCCEEETTEECCTTCBGGGGTCCTT-----
T ss_pred ceeeeeecCCCCEE-EEEeCCCCcHHHHHHHHHhccCCC---------HHHEEEEECCEECCCCCCHHHCCCCCC-----
Confidence 37888999999665 79999999999999999988 55 999999999999999999999999998
Q ss_pred eEEEEEEEcCCccc
Q 033473 84 VIIMHVVVQPSLAK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
.++||+++..++.
T Consensus 170 -stI~LvlrlrGG~ 182 (189)
T 3q3f_A 170 -STLHLVLRLRGGG 182 (189)
T ss_dssp -CEEEECCCCCCCC
T ss_pred -CEEEEEEEcCCCC
Confidence 7899999887764
No 66
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=109.16 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=68.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
+..+.|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 18 ~~~m~i~Vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip---------~~~QrL~~~g~~L~d~~tL~~~~i~~~--- 84 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE--- 84 (172)
T ss_dssp -CCEEEEEEETTTEEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTGGGTCCTT---
T ss_pred CCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCccccccCCHhHcCCccc---
Confidence 3568899999999554 79999999999999999998 55 999999999999999999999999998
Q ss_pred CceEEEEEEEcCCcc
Q 033473 82 GGVIIMHVVVQPSLA 96 (118)
Q Consensus 82 ~~~~t~hlv~~~~~~ 96 (118)
.++||+++..++
T Consensus 85 ---~~l~l~~~~~gg 96 (172)
T 3u30_A 85 ---STLHLVLRLRGG 96 (172)
T ss_dssp ---CEEEEEECCCCC
T ss_pred ---ceeeeeeccccc
Confidence 689999887654
No 67
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.64 E-value=1.5e-15 Score=99.17 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=61.9
Q ss_pred eEEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe-------cCeecCCCCcccccCCCC
Q 033473 6 LIDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-------SGKILENNKTVGQCKIPY 77 (118)
Q Consensus 6 ~i~l~~~~~-~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~-------~Gk~L~D~~tL~~~~i~~ 77 (118)
.|.|.+... ++....+..|++++||.+||++|+.. +++| +++||||| .|++|+|+++|++|+|.+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-----~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~ 74 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-----FATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRD 74 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-----SCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCT
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-----HCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCC
Confidence 355666553 34455688999999999999999988 2333 99999996 699999999999999999
Q ss_pred CCCCCceEEEEEEEcCC
Q 033473 78 GEVPGGVIIMHVVVQPS 94 (118)
Q Consensus 78 g~~~~~~~t~hlv~~~~ 94 (118)
| .++|||-..|
T Consensus 75 g------~~ihlvd~~P 85 (86)
T 4b6w_A 75 E------FVIHVVDLQP 85 (86)
T ss_dssp T------CEEEEEECCC
T ss_pred C------CEEEEEeCCC
Confidence 9 7899986544
No 68
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.63 E-value=7.9e-16 Score=100.58 Aligned_cols=76 Identities=22% Similarity=0.134 Sum_probs=63.5
Q ss_pred CceEEEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE---ecCeecCCCCcccccCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~-~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI---~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++.+.|+++. .| ..+.+ ++++++||.+||++|++.. .+| +++|||| |+|++|+|+.+|++|+|.+|
T Consensus 5 ~~~m~i~Vk~-~g-~~~~i~~v~~~~TV~~lK~~I~~~~-----gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g- 74 (90)
T 1v5t_A 5 SSGLPIIVKW-GG-QEYSVTTLSEDDTVLDLKQFLKTLT-----GVL--PERQKLLGLKVKGKPAENDVKLGALKLKPN- 74 (90)
T ss_dssp CCSCCEEEEE-TT-EEEEECSCCSSSBHHHHHHHHHHHT-----CCC--TTTCEEESCEETTEECCTTSBHHHHTCCTT-
T ss_pred CceEEEEEEE-CC-EEEEEEEeCCCCCHHHHHHHHHHHH-----CcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCC-
Confidence 4567777776 56 44578 9999999999999999981 223 9999999 99999999999999999998
Q ss_pred CCCceEEEEEEEcCC
Q 033473 80 VPGGVIIMHVVVQPS 94 (118)
Q Consensus 80 ~~~~~~t~hlv~~~~ 94 (118)
.++||+..+.
T Consensus 75 -----~~l~l~~~~~ 84 (90)
T 1v5t_A 75 -----TKIMMMGTRE 84 (90)
T ss_dssp -----EEEEEECCCS
T ss_pred -----CEEEEEecCc
Confidence 7899986543
No 69
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.63 E-value=1.8e-15 Score=102.51 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=60.6
Q ss_pred EEEEEEeCCC-CeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCC-CCCCCCC
Q 033473 7 IDIKFRLYDG-SDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEVPG 82 (118)
Q Consensus 7 i~l~~~~~~g-~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~~~ 82 (118)
+.|.|+...+ .....++++|++||++||++|+++ +| +++|||||+|++|+|++||++||| .+|
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip---------p~~QRli~ggkll~D~~TL~~ygI~~~G---- 91 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP---------PVLQQWVIGQRLARDQETLHSHGVRQNG---- 91 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEEECTTCBTGGGTCCSTT----
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC---------HHHEEEeccCeEccCcCcHHHcCCCCCC----
Confidence 4455555543 234579999999999999999988 66 999999999999999999999999 588
Q ss_pred ceEEEEEEEcCC
Q 033473 83 GVIIMHVVVQPS 94 (118)
Q Consensus 83 ~~~t~hlv~~~~ 94 (118)
.++||++-..
T Consensus 92 --~t~hL~l~~~ 101 (105)
T 4dbg_A 92 --DSAYLYLLSA 101 (105)
T ss_dssp --CEEEEEECCC
T ss_pred --CEEEEEEEec
Confidence 6899987644
No 70
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.63 E-value=4.2e-17 Score=120.60 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=7.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
.|.+++.+|..+ .++|++++||.+||++|++. +.+| +++|||||+|++|+|+.||+ ++ +|+
T Consensus 2 qI~VKtL~Gkti-tLeV~~sdTV~~LK~kI~~k-----eGIP--~~qQRLIf~GK~LeD~~TLs-----~~------STL 62 (189)
T 2xzm_9 2 QVQVKTLEGETK-IYTLEQGTSVLDLKSQISQD-----MGFE--IDMMTLVNNGFIAPNTELVT-----DD------VTY 62 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCCEE-EEEECCcChHHHHHHHHHHH-----hCcC--hhHEEEEecCeECCCCCccc-----CC------CEE
Confidence 467778888554 79999999999999999988 2233 99999999999999999999 45 789
Q ss_pred EEEEcCCccccccccccCCCCC
Q 033473 88 HVVVQPSLAKTKTEKKIDDSPR 109 (118)
Q Consensus 88 hlv~~~~~~~~k~~k~~~~k~~ 109 (118)
||+++..++.+++.+..++.|+
T Consensus 63 hLvlRLrGG~~krkK~~~~tPK 84 (189)
T 2xzm_9 63 YLSLKLLGGKKKKKKKSYTTKK 84 (189)
T ss_dssp ---------CCCCCCCCCCSSS
T ss_pred EEEEecCCCcccccccccCCCc
Confidence 9999998887765555565554
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.62 E-value=3e-15 Score=104.23 Aligned_cols=74 Identities=23% Similarity=0.388 Sum_probs=65.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033473 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+.|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|.|+.|+|+.+|++|+|.+|
T Consensus 77 ~~i~Vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~---------~~~qrL~~~g~~L~d~~tL~~~~i~~~------ 140 (152)
T 3b08_A 77 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 140 (152)
T ss_dssp EEEEEEESSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred cceeeeecCCCEE-EEEeCCCCcHHHHHHHHHHHhCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC------
Confidence 5677777888554 79999999999999999998 55 999999999999999999999999998
Q ss_pred EEEEEEEcCCcc
Q 033473 85 IIMHVVVQPSLA 96 (118)
Q Consensus 85 ~t~hlv~~~~~~ 96 (118)
.++||+++..++
T Consensus 141 ~~i~l~~r~~GG 152 (152)
T 3b08_A 141 STLHLVLRLRGG 152 (152)
T ss_dssp CEEEEEECCCC-
T ss_pred CEEEEEEecCCC
Confidence 689999987653
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.61 E-value=2.7e-15 Score=106.20 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=64.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEE-e-cCeecCCCCcccccCCCCCCCCC
Q 033473 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLI-S-SGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI-~-~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.|.+++.+|+.+ .+++++++||.+||++|++. +| +++|||+ | +|+.|+|+.+|++|+|.+|
T Consensus 3 m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip---------~~~QrL~~~~~g~~L~d~~tL~~y~i~~~---- 68 (159)
T 3rt3_B 3 WDLTVKMLAGNEF-QVSLSSSMSVSELKAQITQKIGVH---------AFQQRLAVHPSGVALQDRVPLASQGLGPG---- 68 (159)
T ss_dssp CEEEEEETTSCEE-EEECCTTCCHHHHHHHHHHHHCCC---------GGGEEEEEETTCCBCCTTSCGGGGTCCTT----
T ss_pred eEEEEEECCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------HHHEEEEEcCCCCCCCCCCCHHHcCCCCC----
Confidence 5788888999655 79999999999999999998 55 9999999 9 8999999999999999999
Q ss_pred ceEEEEEEEcC
Q 033473 83 GVIIMHVVVQP 93 (118)
Q Consensus 83 ~~~t~hlv~~~ 93 (118)
.++|++++.
T Consensus 69 --~~l~l~~~~ 77 (159)
T 3rt3_B 69 --STVLLVVDK 77 (159)
T ss_dssp --CEEEEEECC
T ss_pred --CEEEEEccC
Confidence 789999984
No 73
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.61 E-value=4.7e-17 Score=112.77 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=0.9
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
+|.++..+|..+ .+++++++||.+||++|++.. .+| +++|||+|+|+.|+|+.||++|+|.+| .++
T Consensus 2 ~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~~-----gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~g------sti 67 (128)
T 3u5e_m 2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHHh-----CcC--hHHEEEEECCEECCCCCchhhhccCCC------CEE
Confidence 466777888554 799999999999999999882 233 999999999999999999999999998 789
Q ss_pred EEEEcCCcccc
Q 033473 88 HVVVQPSLAKT 98 (118)
Q Consensus 88 hlv~~~~~~~~ 98 (118)
||+++..++..
T Consensus 68 ~l~~rl~GG~~ 78 (128)
T 3u5e_m 68 HLVLRLRGGII 78 (128)
T ss_dssp ---------CC
T ss_pred EEEEEcCCCCC
Confidence 99999887753
No 74
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=108.36 Aligned_cols=73 Identities=23% Similarity=0.391 Sum_probs=61.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033473 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
+.|.++..+|+.+ .+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+|.+|
T Consensus 97 ~~i~Vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip---------~~~q~L~~~g~~L~D~~tL~~y~i~~g------ 160 (172)
T 3u30_A 97 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 160 (172)
T ss_dssp EEEEEEESSCCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCCEEETTEECCTTSBSGGGTCCTT------
T ss_pred ccceeecccCcce-eEEecCCCCHHHHHHHHHHHhCCC---------ceeEEEEECCccCCCCCcHHHhCCCCC------
Confidence 4556677788554 79999999999999999998 55 999999999999999999999999999
Q ss_pred EEEEEEEcCCc
Q 033473 85 IIMHVVVQPSL 95 (118)
Q Consensus 85 ~t~hlv~~~~~ 95 (118)
.++||+++..+
T Consensus 161 ~tl~l~~rlrg 171 (172)
T 3u30_A 161 STLHLVLRLRG 171 (172)
T ss_dssp CEEEECC----
T ss_pred CEEEEEEecCC
Confidence 78999988654
No 75
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.5e-15 Score=100.37 Aligned_cols=72 Identities=29% Similarity=0.320 Sum_probs=61.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
++.+.|+++. .| ..+.+++++++||.+||++|++. +| +++|||||.|++|+ +.+|++|+|.+|
T Consensus 15 ~~~~~i~Vk~-~g-~~~~i~v~~~~TV~~LK~~I~~~tgip---------~~~QrL~~~Gk~Ld-d~tL~~~~i~~g--- 79 (95)
T 1v86_A 15 KELVDLKIIW-NK-TKHDVKVPLDSTGSELKQKIHSITGLP---------PAMQKVMYKGLVPE-DKTLREIKVTSG--- 79 (95)
T ss_dssp CCCEEEEEEE-TT-EEEEEEECTTSBHHHHHHHHHHHHCSC---------STTCCCBSSSBCCS-SSBHHHHCCCTT---
T ss_pred CceEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEEECCeeCC-cCcHHHCCCCCC---
Confidence 3668888885 46 45589999999999999999998 55 99999999999995 459999999998
Q ss_pred CceEEEEEEEcC
Q 033473 82 GGVIIMHVVVQP 93 (118)
Q Consensus 82 ~~~~t~hlv~~~ 93 (118)
.++||+..+
T Consensus 80 ---~~i~lv~~~ 88 (95)
T 1v86_A 80 ---AKIMVVGST 88 (95)
T ss_dssp ---EEEEECCSS
T ss_pred ---CEEEEEecc
Confidence 789998654
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.59 E-value=7.8e-15 Score=102.09 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=65.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (118)
.|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gip---------~~~q~L~~~g~~L~d~~tL~~~~i~~~------~ 65 (152)
T 3b08_A 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (152)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred EEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------hHHeEEEECCeECcCcccHHHhccCCC------C
Confidence 577888888554 79999999999999999998 55 999999999999999999999999998 6
Q ss_pred EEEEEEcCCcc
Q 033473 86 IMHVVVQPSLA 96 (118)
Q Consensus 86 t~hlv~~~~~~ 96 (118)
++|++.+.+++
T Consensus 66 ~l~l~~~~~~~ 76 (152)
T 3b08_A 66 TLHLVLRLRGG 76 (152)
T ss_dssp EEEEEECCTTC
T ss_pred eeEEEeecccc
Confidence 89999887654
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.7e-15 Score=95.77 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=59.7
Q ss_pred eEEEEEEeCCCCee-eeE-EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec--CeecCCCCcccccCCCCCCCC
Q 033473 6 LIDIKFRLYDGSDI-GPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--GKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 6 ~i~l~~~~~~g~~~-~~~-~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~--Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
.+.|.++...|+.+ +.+ ++++++||.+||++|++..+ .+| +++|||+|. ||+|+|+.||++|+|.+|
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~----~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~--- 80 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHP----QWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTT--- 80 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCS----SSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSE---
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhc----CCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCC---
Confidence 47788888887664 357 99999999999999998421 122 999999977 999999999999999998
Q ss_pred CceEEEEE
Q 033473 82 GGVIIMHV 89 (118)
Q Consensus 82 ~~~~t~hl 89 (118)
.++|+
T Consensus 81 ---stl~~ 85 (88)
T 2dzj_A 81 ---ATLYF 85 (88)
T ss_dssp ---EEEEE
T ss_pred ---CEEEE
Confidence 67775
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.56 E-value=1.9e-14 Score=95.51 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=61.5
Q ss_pred CceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec--Ce---ec-CCCCcccccCCC
Q 033473 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--GK---IL-ENNKTVGQCKIP 76 (118)
Q Consensus 4 ~~~i~l~~~~~~g~-~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~--Gk---~L-~D~~tL~~~~i~ 76 (118)
+..|+|.++...+. ...++++++++||++||++|++. +++| +++|||||. |+ .| +|+++|++|+|.
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-----~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~ 85 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-----TGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANS 85 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-----HCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCS
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-----HCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcC
Confidence 56788888886663 24589999999999999999998 2233 999999998 45 44 999999999999
Q ss_pred CCCCCCceEEEEEE
Q 033473 77 YGEVPGGVIIMHVV 90 (118)
Q Consensus 77 ~g~~~~~~~t~hlv 90 (118)
+| .++||+
T Consensus 86 ~g------stihlv 93 (95)
T 2kjr_A 86 DG------LRLHVV 93 (95)
T ss_dssp SS------CEEEEE
T ss_pred CC------CEEEEE
Confidence 99 789987
No 79
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.53 E-value=1.7e-14 Score=115.73 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=68.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
...+.|.||..+|+. +.++|++++||.+||++|++.+. .+.+| +++|||||+||+|+|+++|++|+|.+|+
T Consensus 5 ~~~M~I~VKtl~Gk~-~~leV~~~~TV~~LK~~I~~~~~--~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs---- 75 (368)
T 1oqy_A 5 SSAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN---- 75 (368)
T ss_dssp -CCCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHHHTC--SSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS----
T ss_pred CceEEEEEEeCCCCE-EEEEeCCCChHHHHHHHHHHHhC--cCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC----
Confidence 345788999999955 47999999999999999999632 12344 9999999999999999999999999984
Q ss_pred eEEEEEEEcCCccc
Q 033473 84 VIIMHVVVQPSLAK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
..+|++.++.++.
T Consensus 76 -tIv~lv~k~~~~~ 88 (368)
T 1oqy_A 76 -FVVVMVTKTKAGQ 88 (368)
T ss_dssp -CEEEEEECCCSSS
T ss_pred -EEEEEEecCCCCC
Confidence 2458888875543
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=4.2e-14 Score=94.28 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=61.6
Q ss_pred CceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe---e----cCCCCcccccCC
Q 033473 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK---I----LENNKTVGQCKI 75 (118)
Q Consensus 4 ~~~i~l~~~~~~g~-~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk---~----L~D~~tL~~~~i 75 (118)
+..|.|.+...... ...+++|++++||++||++|++. +++| +++|||||.|+ . ++|+++|++|+|
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-----~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I 84 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-----CGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSP 84 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-----HCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCC
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-----HCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCC
Confidence 56788888875542 23589999999999999999998 2233 99999999984 3 599999999999
Q ss_pred CCCCCCCceEEEEEEE
Q 033473 76 PYGEVPGGVIIMHVVV 91 (118)
Q Consensus 76 ~~g~~~~~~~t~hlv~ 91 (118)
.+| .++||+-
T Consensus 85 ~~g------~~Ihlvd 94 (97)
T 2kj6_A 85 FDG------FRLHIID 94 (97)
T ss_dssp CSC------CEEEEEE
T ss_pred CCC------CEEEEEe
Confidence 999 7899874
No 81
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.52 E-value=4.1e-14 Score=111.25 Aligned_cols=73 Identities=23% Similarity=0.399 Sum_probs=64.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
..++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||||+||+|+|+.+|++|+|.+|
T Consensus 232 ~~MqI~VKtl~Gk~~-~leV~~s~TV~dLK~kI~~~~GIp---------~~~QRLi~~Gk~L~D~~TLsdygI~~g---- 297 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 297 (307)
T ss_dssp CCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTGGGTCCTT----
T ss_pred CeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEeCCeecCCCCCHHHcCCCCC----
Confidence 457888898889655 79999999999999999998 55 999999999999999999999999998
Q ss_pred ceEEEEEEEcC
Q 033473 83 GVIIMHVVVQP 93 (118)
Q Consensus 83 ~~~t~hlv~~~ 93 (118)
.++||++|.
T Consensus 298 --stL~LvlRL 306 (307)
T 3ai5_A 298 --STLHLVLRL 306 (307)
T ss_dssp --CEEEEEC--
T ss_pred --CEEEEEEeC
Confidence 689999774
No 82
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=7.3e-14 Score=91.98 Aligned_cols=76 Identities=18% Similarity=0.141 Sum_probs=61.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC---ee----cCCCCcccccCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIP 76 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G---k~----L~D~~tL~~~~i~ 76 (118)
+..|.|.++........++++++++||++||++|++.. ++| +++|||+|.| +. |+|+++|++|+|.
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~-----gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~ 77 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVV-----GSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVD 77 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHT-----CSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCC
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHH-----CCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCC
Confidence 45588888776553135799999999999999999982 233 9999999987 43 5899999999999
Q ss_pred CCCCCCceEEEEEEEc
Q 033473 77 YGEVPGGVIIMHVVVQ 92 (118)
Q Consensus 77 ~g~~~~~~~t~hlv~~ 92 (118)
+| .++||+-.
T Consensus 78 ~g------~~l~v~d~ 87 (95)
T 1v6e_A 78 DG------CRIHVIDH 87 (95)
T ss_dssp TT------CEEEEBCC
T ss_pred CC------CEEEEEEC
Confidence 99 68998753
No 83
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.6e-14 Score=94.28 Aligned_cols=74 Identities=16% Similarity=0.317 Sum_probs=61.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe--cCeecCCCCcccccCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS--SGKILENNKTVGQCKIPYGEV 80 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~--~Gk~L~D~~tL~~~~i~~g~~ 80 (118)
+.+.+++++ .|+.+ .+++++++||++||++|++. +| +++|||+| .|+ |+|+.+|++|+|+.|
T Consensus 8 ~m~~~~vk~-~Gk~~-~v~v~~~~TV~~LK~~I~~~tgIp---------p~~QkLi~~~~gk-L~D~~tLs~~~I~~g-- 73 (100)
T 2dzm_A 8 RMLDFRVEY-RDRNV-DVVLEDTCTVGEIKQILENELQIP---------VSKMLLKGWKTGD-VEDSTVLKSLHLPKN-- 73 (100)
T ss_dssp CEEEEEEEC-SSCEE-EEEEETTSBHHHHHHHHHHHHCCC---------TTTCCEECCSSSC-CCTTSBHHHHCCCSE--
T ss_pred ceEEEEEEe-CCeEE-EEEECCCCcHHHHHHHHHHHHCCC---------hhHeEEEccCCCC-CCCcCCHHHcCCCCC--
Confidence 345555555 55454 79999999999999999998 55 99999997 777 999999999999998
Q ss_pred CCceEEEEEEEcCCcc
Q 033473 81 PGGVIIMHVVVQPSLA 96 (118)
Q Consensus 81 ~~~~~t~hlv~~~~~~ 96 (118)
.+||||+.+..+
T Consensus 74 ----stL~lvl~~~~~ 85 (100)
T 2dzm_A 74 ----NSLYVLTPDLPP 85 (100)
T ss_dssp ----EEEEECCSSSCC
T ss_pred ----CEEEEEecCCCC
Confidence 899999886553
No 84
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.47 E-value=4.7e-13 Score=92.03 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=61.1
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecC---ee----cCCCCcccccCCC
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIP 76 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~G---k~----L~D~~tL~~~~i~ 76 (118)
.|.|.+....+....++++++++||++||++|+.. +| +++|||+|.| +. ++|+.+|++|+|.
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip---------~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~ 76 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT---------VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR 76 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC---------TTTEEEEEECSSSSEEEECCCCSSBTTTTTCC
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC---------HHHeEEEEecCCCccccccCCCcCCHHHCCCC
Confidence 57777776554213578999999999999999998 55 9999999988 43 4899999999999
Q ss_pred CCCCCCceEEEEEEEcCCc
Q 033473 77 YGEVPGGVIIMHVVVQPSL 95 (118)
Q Consensus 77 ~g~~~~~~~t~hlv~~~~~ 95 (118)
+| .++||+...++
T Consensus 77 ~g------~~ihvvd~~p~ 89 (122)
T 1t0y_A 77 DG------YRIHAVDVTGG 89 (122)
T ss_dssp SS------EEEEEEECTTC
T ss_pred CC------CEEEEEeCCCC
Confidence 99 89999864433
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.45 E-value=1.1e-13 Score=93.13 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=63.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe-----------e----cCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-----------I----LENN 67 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~-~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk-----------~----L~D~ 67 (118)
.+.+.|+||..+|+. .++++ +++||.+||++|++... +| +++|||+|.|+ . ++|+
T Consensus 5 ~~~M~irvrs~~G~~--~v~v~~~~~Tv~~LK~kI~~~~g-----ip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~ 75 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLE--RVSVDGPHITVSQLKTLIQDQLQ-----IP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPN 75 (107)
T ss_dssp CCCEEEEEECSSCEE--EEEECCTTSBHHHHHHHHHHHSC-----CC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTT
T ss_pred CCeEEEEEECCCCCE--EEEECCCCCcHHHHHHHHHHHhC-----cC--cccCEEEECCccccccCccccccccccCCCC
Confidence 455789999999943 48999 99999999999999832 23 99999999998 4 5899
Q ss_pred CcccccCCCCCCCCCceEEEEEEEcC
Q 033473 68 KTVGQCKIPYGEVPGGVIIMHVVVQP 93 (118)
Q Consensus 68 ~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
.+|++|+|.+| .++||+...
T Consensus 76 ~tL~~~gi~~G------~~L~l~~~~ 95 (107)
T 1wf9_A 76 LRISSLNLAHG------SMVYLAYEG 95 (107)
T ss_dssp CBGGGTCCCTT------CEEECCCSS
T ss_pred CCHHHCCCCCC------CEEEEEeCC
Confidence 99999999999 679998664
No 86
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=1.2e-12 Score=86.69 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=68.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
.+.++|+++..+|+.+ .+.+.+++++..|++.++++ +| ++++||||.|+.|+++.|+++|++.+|
T Consensus 5 ~~~i~ikVk~~~g~~i-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg--- 71 (94)
T 2io1_B 5 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE--- 71 (94)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEECCCCHHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC---
Confidence 5789999999999766 69999999999999999988 55 899999999999999999999999999
Q ss_pred CceEEEEEEEcCCcc
Q 033473 82 GGVIIMHVVVQPSLA 96 (118)
Q Consensus 82 ~~~~t~hlv~~~~~~ 96 (118)
.+||++++..++
T Consensus 72 ---D~Idv~~~~~GG 83 (94)
T 2io1_B 72 ---DTIDVFQQQTGG 83 (94)
T ss_dssp ---CEEEEEECCEES
T ss_pred ---CEEEEEEeccCC
Confidence 569999876554
No 87
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.39 E-value=6.3e-13 Score=104.75 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=62.1
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEE---ecCeecCCCCcccccCCCC
Q 033473 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPY 77 (118)
Q Consensus 3 ~~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI---~~Gk~L~D~~tL~~~~i~~ 77 (118)
+++.++|+++. +|+ .+.+++++++||++||++|++. +| +++|||| |+|++|+|+.+|++|+|++
T Consensus 2 ~~~~i~i~Vk~-~g~-~~~v~v~~~~Tv~~lK~~I~~~tgVp---------p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~ 70 (320)
T 3shq_A 2 EVKEVVVIVKW-SGK-EYPVDLTDQDTVEVLRHEIFRKTQVR---------PERQKLLNLKYKGKTAADNVKISALELKP 70 (320)
T ss_dssp --CEEEEEEEE-TTE-EEEEEEETTSBHHHHHHHHHHHHCCC---------GGGCEETTCBSSSSBCCTTSBTTSSCCC-
T ss_pred CCceEEEEEEE-CCE-EEEEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEeecccCCcccCccccHHHcCCCC
Confidence 34668888886 564 4579999999999999999988 55 9999999 8999999999999999999
Q ss_pred CCCCCceEEEEEEEcCCc
Q 033473 78 GEVPGGVIIMHVVVQPSL 95 (118)
Q Consensus 78 g~~~~~~~t~hlv~~~~~ 95 (118)
| .++||+-.+..
T Consensus 71 g------~~l~L~gs~~~ 82 (320)
T 3shq_A 71 N------FKLMMVGSTEA 82 (320)
T ss_dssp -------CEEEEECCCC-
T ss_pred C------CEEEEEccchh
Confidence 9 68999866543
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=5.1e-12 Score=83.24 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=69.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|+++..+|+.+ .+.+.+++++..|++..+++.- +| ++++||+|.|+.|.++.|++++++.+|
T Consensus 3 ~~~i~ikVk~~~g~~v-~~~vk~~t~l~kl~~~y~~~~g-----i~--~~~~rf~FdG~~l~~~~Tp~dl~medg----- 69 (91)
T 2io0_B 3 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQG-----LS--MRQIRFRFDGQPINETDTPAQLEMEDE----- 69 (91)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHTT-----CC--STTEEEEETTEECCTTCCTTTTTCCTT-----
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhC-----CC--cccEEEEECCEEcCCCCCHHHcCCCCC-----
Confidence 3679999999999766 6999999999999999998821 22 899999999999999999999999999
Q ss_pred eEEEEEEEcCCccc
Q 033473 84 VIIMHVVVQPSLAK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
.+||++.+..++.
T Consensus 70 -D~Idv~~~q~gg~ 82 (91)
T 2io0_B 70 -DTIDVFQQQTGGV 82 (91)
T ss_dssp -EEEEEEECCCCCC
T ss_pred -CEEEEEEeccCCc
Confidence 6799998876654
No 89
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.32 E-value=1.5e-12 Score=84.16 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=57.5
Q ss_pred EEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecC---CCCcccccCCCCCCCC
Q 033473 8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE---NNKTVGQCKIPYGEVP 81 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~-v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G--k~L~---D~~tL~~~~i~~g~~~ 81 (118)
.|++|+.+|+.+ ++ +++++||.+||++|++... +| +++|||+|++ |.|+ |+.+|++|||..|
T Consensus 2 ~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~~g-----i~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g--- 69 (86)
T 2kzr_A 2 RVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAITG-----IA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSG--- 69 (86)
T ss_dssp CEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHHTC-----CC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTT---
T ss_pred EEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHHhC-----CC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCC---
Confidence 588999999543 67 9999999999999999822 22 8999999984 8874 7899999999998
Q ss_pred CceEEEEEEEc
Q 033473 82 GGVIIMHVVVQ 92 (118)
Q Consensus 82 ~~~~t~hlv~~ 92 (118)
.++||...
T Consensus 70 ---~~l~v~~~ 77 (86)
T 2kzr_A 70 ---DMLIVEED 77 (86)
T ss_dssp ---CEEECCCC
T ss_pred ---CEEEEEeC
Confidence 67888644
No 90
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.32 E-value=2e-11 Score=80.50 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=66.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.|+|+++..+|+.+ .+.+.+++++..|++.++++ +| ++++||+|.|+.|.++.|+++|++.+|
T Consensus 16 ~~i~ikV~~~~g~~i-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~dl~medg---- 81 (93)
T 2d07_B 16 DHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE---- 81 (93)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT----
T ss_pred CeEEEEEECCCCCEE-EEEEccCCHHHHHHHHHHHHhCCC---------ccceEEEECCEEcCCCCCHHHcCCCCC----
Confidence 678899998899766 69999999999999999988 54 899999999999999999999999999
Q ss_pred ceEEEEEEEcCCc
Q 033473 83 GVIIMHVVVQPSL 95 (118)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (118)
.+||++++..+
T Consensus 82 --D~Idv~~~q~G 92 (93)
T 2d07_B 82 --DTIDVFQQQTG 92 (93)
T ss_dssp --EEEEEEECC--
T ss_pred --CEEEEEeeccC
Confidence 67999877543
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.27 E-value=3.2e-11 Score=75.70 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=61.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCce
Q 033473 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (118)
Q Consensus 7 i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (118)
++|+++..+|+.+ .+.+.+++++..|++..+++ +| ++++||+|.|+.|.++.|++++++.+|
T Consensus 2 i~lkV~~~~g~~v-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~~l~medg------ 65 (72)
T 1wm3_A 2 INLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE------ 65 (72)
T ss_dssp EEEEEECTTSCEE-EEEECTTSCTHHHHHHHHHHHTCC---------TTTCEEEETTEECCTTCCTTTTTCCTT------
T ss_pred EEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cceEEEEECCEEcCCCCCHHHcCCCCC------
Confidence 6788888899766 69999999999999999988 54 899999999999999999999999999
Q ss_pred EEEEEE
Q 033473 85 IIMHVV 90 (118)
Q Consensus 85 ~t~hlv 90 (118)
.++|+.
T Consensus 66 D~Idv~ 71 (72)
T 1wm3_A 66 DTIDVF 71 (72)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 678875
No 92
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=2.4e-11 Score=81.85 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=67.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.|+|+++..+|+.+ .|.|.+++++..|++.++++ +| ++++||||.|+.|.++.|+++|++.+|
T Consensus 23 ~~I~IkVk~~~g~~i-~~kVk~~t~l~kL~~~y~ek~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg---- 88 (104)
T 1wz0_A 23 DHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE---- 88 (104)
T ss_dssp CCEEEEEECSSSCEE-EEEECTTSCHHHHHHHHHHHHTCC---------TTTSCEESSSSBCCTTSCTTTTTCCTT----
T ss_pred CeEEEEEECCCCCEE-EEEEcCCChHHHHHHHHHHHhCCC---------cceEEEEECCEEcCCCCCHHHcCCCCC----
Confidence 678999999999766 69999999999999999988 55 889999999999999999999999999
Q ss_pred ceEEEEEEEcCCcc
Q 033473 83 GVIIMHVVVQPSLA 96 (118)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (118)
.+||++++..++
T Consensus 89 --D~Idv~~~q~GG 100 (104)
T 1wz0_A 89 --DTIDVFQQQTSG 100 (104)
T ss_dssp --EEEEECCCCCCC
T ss_pred --CEEEEEEeccCC
Confidence 679998776554
No 93
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.22 E-value=3.5e-11 Score=81.87 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=68.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.|.|+++..+|+.+ .|.|.+++++..|++..+++ +| ++++||||.|+.|.++.|+++|++.+|
T Consensus 25 ~~I~IkVk~~~g~~i-~fkVk~~t~l~kL~~ay~ek~gi~---------~~~~rfiFdG~~L~~~~Tp~dl~mEDg---- 90 (110)
T 2k8h_A 25 ALVAVKVVNADGAEM-FFRIKSRTALKKLIDTYCKKQGIS---------RNSVRFLFDGTPIDETKTPEELGMEDD---- 90 (110)
T ss_dssp CCEEEEEEETTSCCE-EEEECTTSSHHHHHHHHHHHHTCC---------SSSCEEESSSCBCCSSSHHHHHHCSSE----
T ss_pred CeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC----
Confidence 679999999999776 69999999999999999988 55 889999999999999999999999999
Q ss_pred ceEEEEEEEcCCcc
Q 033473 83 GVIIMHVVVQPSLA 96 (118)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (118)
.+||+++...++
T Consensus 91 --D~Idv~~~q~Gg 102 (110)
T 2k8h_A 91 --DVIDAMVEQTGG 102 (110)
T ss_dssp --EEEEEECCCCCC
T ss_pred --CEEEEEEcccCc
Confidence 679998776553
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.22 E-value=7.2e-11 Score=75.49 Aligned_cols=71 Identities=10% Similarity=0.145 Sum_probs=63.5
Q ss_pred CceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCC
Q 033473 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (118)
Q Consensus 4 ~~~i~l~~~~~~g~-~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (118)
.+.++|+++..+|+ .+ .+.+.+++++..|++..+++ ++ ++++||+|.|+.|.++.|++++++.+|
T Consensus 5 ~~~i~ikV~~~~g~~~i-~~~i~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~~l~medg-- 72 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQML-EISLSPDSPLKVLMSHYEEAMGLS---------GHKLSFFFDGTKLSGKELPADLGLESG-- 72 (79)
T ss_dssp CCCEEEEEECSSTTCEE-EEEECTTSCHHHHHHHHHHHHTCT---------TCCCEEEETTEECCSCCCHHHHTCCTT--
T ss_pred CCEEEEEEEeCCCCEEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC--
Confidence 57899999999996 55 69999999999999999988 54 889999999999999999999999999
Q ss_pred CCceEEEEEE
Q 033473 81 PGGVIIMHVV 90 (118)
Q Consensus 81 ~~~~~t~hlv 90 (118)
.++|+.
T Consensus 73 ----D~Idv~ 78 (79)
T 3a4r_A 73 ----DLIEVW 78 (79)
T ss_dssp ----CEEEEE
T ss_pred ----CEEEEe
Confidence 457764
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.21 E-value=1.2e-10 Score=78.74 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=65.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.|+|+++. +|+.+ .|.+.+++++..|++..+++ ++ ++++||+|.|+.|.++.|++++++.+|
T Consensus 30 ~~I~IkV~~-~g~~i-~fkIk~tt~l~kL~~ay~ek~gi~---------~~~~rF~FdG~rl~~~~Tp~dl~medg---- 94 (106)
T 2eke_C 30 THINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN---- 94 (106)
T ss_dssp SEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT----
T ss_pred CeEEEEEec-CCcEE-EEEeCCCCHHHHHHHHHHHHhCCC---------cccEEEEECCeEcCCCCCHHHcCCCCC----
Confidence 679999998 89766 69999999999999999988 44 899999999999999999999999999
Q ss_pred ceEEEEEEEcCCc
Q 033473 83 GVIIMHVVVQPSL 95 (118)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (118)
.+||++++..+
T Consensus 95 --D~Idv~~~q~G 105 (106)
T 2eke_C 95 --DIIEAHREQIG 105 (106)
T ss_dssp --EEEEEEECC--
T ss_pred --CEEEEEeeccc
Confidence 67999877543
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.09 E-value=7.9e-10 Score=72.63 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=60.2
Q ss_pred CceEEEEEEeC---CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC------ee-c-CCCCcccc
Q 033473 4 EELIDIKFRLY---DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG------KI-L-ENNKTVGQ 72 (118)
Q Consensus 4 ~~~i~l~~~~~---~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G------k~-L-~D~~tL~~ 72 (118)
+..|+|.++.. +| ...+..+++++||.+||++|+..+- .| ++.|||.|.+ .+ | +|+.+|+.
T Consensus 7 ~~~v~l~I~~~~~~~~-~~~e~~l~~~~TV~~LK~~i~~~~g-----ip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~ 78 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPER-QILEKQLPDSMTVQKVKGLLSRLLK-----VP--VSELLLSYESSKMPGREIELENDLQPLQF 78 (97)
T ss_dssp SCEEEEEEEESSCSSS-CCEEEEEETTSBHHHHHHHHHTTTT-----CC--TTTCEEEEECTTSCSCEEECCCSSSBSGG
T ss_pred CccEEEEEEecCCCCC-cEEEEECCCCCCHHHHHHHHHHHHC-----CC--hhHeEEEEEcCCCCceeeccCCCcccHhh
Confidence 35688888763 45 4557899999999999999999832 22 9999999873 23 5 78899999
Q ss_pred cCCCCCCCCCceEEEEEEEcC
Q 033473 73 CKIPYGEVPGGVIIMHVVVQP 93 (118)
Q Consensus 73 ~~i~~g~~~~~~~t~hlv~~~ 93 (118)
|++.+| .++||+...
T Consensus 79 y~i~~G------~~I~V~d~~ 93 (97)
T 1wjn_A 79 YSVENG------DCLLVRWSG 93 (97)
T ss_dssp GTCCTT------CEEEEECCS
T ss_pred cCCCCC------CEEEEEecC
Confidence 999999 679987643
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.84 E-value=2.5e-08 Score=68.27 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=64.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.|+|+++..+|..+ .|.+..++++..|++..+++ ++ .+++||+|.|+.|.++.|.+++++.+||
T Consensus 39 ~~I~LKV~~qdg~ev-~fkIk~tt~L~KLm~aY~er~Gl~---------~~~irFlFDG~rI~~~~TP~dL~MEDgD--- 105 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEED--- 105 (115)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------TTSEEEEETTEECCTTCCTTTTTCCTTC---
T ss_pred CeEEEEEEcCCCCEE-EEEEccCChHHHHHHHHHHHhCCC---------hhhEEEEECCeECCCCCCHHHcCCCCCC---
Confidence 678888888899776 69999999999999999988 44 9999999999999999999999999994
Q ss_pred ceEEEEEEEcC
Q 033473 83 GVIIMHVVVQP 93 (118)
Q Consensus 83 ~~~t~hlv~~~ 93 (118)
+|+++.+.
T Consensus 106 ---~IdV~~~Q 113 (115)
T 3kyd_D 106 ---VIEVYQEQ 113 (115)
T ss_dssp ---EEEEEECC
T ss_pred ---EEEEEeec
Confidence 57877553
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.5e-07 Score=69.88 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=67.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (118)
+.|+|+++ .+|..+ .|.+.+++++..|++..+++ +| .+++||+|.|+.|.++.|.+++++.+|
T Consensus 28 ~~I~LkV~-~~g~~v-~fkIk~~t~l~kL~~ay~er~Gi~---------~~~~RF~FdG~rI~~~~TP~dL~MEdg---- 92 (200)
T 3pge_A 28 THINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN---- 92 (200)
T ss_dssp CCEEEEEE-CSSCEE-EEEECTTSCTHHHHHHHHHHHSSC---------GGGEEEEETTEECCTTCCTTTTTCCTT----
T ss_pred CeEEEEEe-cCCCEE-EEEEecCCHHHHHHHHHHHHhCCC---------hhhEEEEECCEEcCCCCCHHHcCCCCC----
Confidence 56888887 478665 69999999999999999988 44 999999999999999999999999999
Q ss_pred ceEEEEEEEcCCcccc
Q 033473 83 GVIIMHVVVQPSLAKT 98 (118)
Q Consensus 83 ~~~t~hlv~~~~~~~~ 98 (118)
.++|++.+.-++.+
T Consensus 93 --D~Idv~~~q~gg~k 106 (200)
T 3pge_A 93 --DIIEAHREQIGGGG 106 (200)
T ss_dssp --EEEEEEECCSCCC-
T ss_pred --CEEEEEeccCcCcC
Confidence 67999888777654
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.52 E-value=3.5e-07 Score=67.83 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=67.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|++. .+|..+ .|.|.+++++..|++..+++.- + +++++||+|.|+.|.++.|.+++++.+|
T Consensus 55 ~e~InLKVk-~dG~eV-~FKIKrtTpL~KLmeAYcERqG-----L--~~~sIRFLFDGqRI~~ddTPeDLdMEDG----- 120 (207)
T 3tix_A 55 ETHINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKRQG-----K--EMDSLTFLYDGIEIQADQTPEDLDMEDN----- 120 (207)
T ss_dssp CCEEEEEEE-CSSCEE-EEEEETTSCTHHHHHHHHHHTT-----C--CGGGSCEEETTEECCSSCCTTTTTCCTT-----
T ss_pred CCcEEEEEe-cCCCEE-EEEEccCChHHHHHHHHHHHhC-----C--CcccEEEEECCeecCCCCCHHHcCCCCC-----
Confidence 366889997 488665 6999999999999999998822 2 2899999999999999999999999999
Q ss_pred eEEEEEEEcCCccc
Q 033473 84 VIIMHVVVQPSLAK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
.+|+++++..++.
T Consensus 121 -DtIDV~leQ~GG~ 133 (207)
T 3tix_A 121 -DIIEAHREQIGGL 133 (207)
T ss_dssp -EEEEECCCCCTTG
T ss_pred -CEEEEEEeccCCC
Confidence 6799988776664
No 100
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.24 E-value=6.2e-06 Score=54.50 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=38.1
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecC
Q 033473 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE 65 (118)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~ 65 (118)
|.+..+ ....+.+.++.||..+|++|+++ +++| +++|+|||.|+.|.
T Consensus 18 f~~~~a-~~h~v~I~~~etv~~~ke~V~eq-----TgIp--~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 18 FSLQQM-TAHKIYIHSYNTATIFHELVYKQ-----TKII--SSNQELIYEGRRLV 64 (94)
T ss_dssp EETTTT-EEEEEEEETTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEEEC
T ss_pred EEcccc-eEEEEEeccchHHHHHHHHHHHH-----hCCC--HHHHHHHhCCCccc
Confidence 334555 66689999999999999999998 2333 99999999998774
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.20 E-value=5.8e-07 Score=57.42 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=48.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCee-----cCCCCcccccCCCCCCC
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI-----LENNKTVGQCKIPYGEV 80 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~-----L~D~~tL~~~~i~~g~~ 80 (118)
.+.||||..+|.. -+++++++||.+|+++|++.++ ++ ++.+.|.++-.. +.++.+|+++||..||.
T Consensus 4 ~m~lRvrs~~G~~--Ri~v~~~~t~~~L~~~I~~~~~-----i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~ 74 (80)
T 2pjh_A 4 SIIIRVQSPDGVK--RITATKRETAATFLKKVAKEFG-----FQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGDL 74 (80)
T ss_dssp CCCCEEECSSEEE--ECCCCSSCCHHHHHHHHHHHTC-----CC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCC
T ss_pred cEEEEEECCCCCE--EEEcCCcChHHHHHHHHHHHcC-----CC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCCE
Confidence 4778999999943 3789999999999999999854 11 334333222222 34788999999999963
No 102
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.15 E-value=2.8e-07 Score=69.23 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=0.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
.+.|+|++ ..+|..+ .|.+..++.+..|++..+++.. . +++++||+|.|+.|.++.|.+++++.+|
T Consensus 19 ~e~InLKV-~qdGseV-~FKIKrtTpL~KLM~AYcERqG-----L--s~~siRFLFDGqRI~dddTPadL~MEDG----- 84 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEI-FFKIKKTTPLRRLMEAFAKRQG-----K--EMDSLRFLYDGIRIQADQTPEDLDMEDN----- 84 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEE-EEEEccCChHHHHHHHHHHHhC-----C--CccceEEEECCEecCCCCCHHHcCCCCC-----
Confidence 46788888 6688665 6999999999999999888822 2 2899999999999999999999999999
Q ss_pred eEEEEEEEcCCccc
Q 033473 84 VIIMHVVVQPSLAK 97 (118)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (118)
.+|+++.+..++.
T Consensus 85 -DtIDV~leQ~GG~ 97 (227)
T 3v7o_A 85 -DIIEAHREQIGGL 97 (227)
T ss_dssp ------------CC
T ss_pred -CEEEEEecccCCc
Confidence 4688887766653
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.01 E-value=6.2e-05 Score=49.79 Aligned_cols=68 Identities=9% Similarity=0.140 Sum_probs=58.6
Q ss_pred CceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 4 ~~~i~l~~~~~~g~-~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+.|+|+++-.+|. .+ .+.+..++....|....+++.. .+++.+||+|.|..|..+.|.+++++.+||
T Consensus 23 ~~~I~LkV~~~dg~~~v-~fkIk~~t~l~kLm~aY~~~~g-------~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTL-EVSLSRDSPLKTLMSHYEEAMG-------LSGRKLSFFFDGTKLSGRELPADLGMESGD 91 (97)
T ss_dssp CSEEEEEEEESSSSCEE-EEEEETTSCHHHHHHHHHHHTT-------CSSSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred CCeEEEEEEcCCCCEEE-EEEECCCChHHHHHHHHHHHHC-------CCcccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 47789999888885 44 5999999999999999888732 228899999999999999999999999994
No 104
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.01 E-value=5.3e-05 Score=48.20 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=55.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeec---CCCCcccccCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPYG 78 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI--~~Gk~L---~D~~tL~~~~i~~g 78 (118)
+...+|+||+.+|+.+ .-.|..++||.+|.+.|...- .+....+|+ |-.|.| +.+.||+++|+..+
T Consensus 5 ~~~~~i~iRlpdG~r~-~~~F~~~~tl~~v~~fv~~~~--------~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~ 75 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFL-ERRFLASNKLQIVFDFVASKG--------FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQ 75 (84)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHTT--------CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSE
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHcC--------CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCC
Confidence 5678999999999765 589999999999999998851 115667777 446778 34799999999865
Q ss_pred CCCCceEEEEE
Q 033473 79 EVPGGVIIMHV 89 (118)
Q Consensus 79 ~~~~~~~t~hl 89 (118)
.+++|
T Consensus 76 ------a~L~v 80 (84)
T 3qx1_A 76 ------ETLFL 80 (84)
T ss_dssp ------EEEEE
T ss_pred ------CEEEE
Confidence 55665
No 105
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.96 E-value=8.7e-05 Score=47.57 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=55.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCc-eeEEEecCeecCCCCcccccCCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVT-EIKLISSGKILENNKTVGQCKIPYGEV 80 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~-~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (118)
..|++-+|.....++ .+.+.++++|..|-..-..+ +| ++ .+||.|-|..|+.+.++.+|.+.+||.
T Consensus 8 ~~~~~~~~~~~~~dl-~f~I~~~t~v~kLi~ayc~~~~I~---------~~~~IrllFDGdRLdp~~tp~DlemeD~D~ 76 (82)
T 3goe_A 8 KLITLLLRSSKSEDL-RLSIPVDFTVKDLIKRYCTEVKIS---------FHERIRLEFEGEWLDPNDQVQSTELEDEDQ 76 (82)
T ss_dssp CEEEEEEEESSSCCE-EEEEETTSBHHHHHHHHHHHHTCC---------CCTTCEEEETTEECCTTSBGGGSSCCTTCE
T ss_pred HHHHHhhhccCCCCe-EEEecCCCCHHHHHHHHHHHcCCC---------cCceEEEEEcCcccCccCChhhhCCcCCce
Confidence 357777887766577 59999999999988777766 65 66 999999999999999999999999963
No 106
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.92 E-value=7.7e-05 Score=55.09 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=64.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (118)
++.|+|+++- +|+.+ .|.+..++....|++..+++ +| .+++||+|.|+.+.+++|..++.+.++
T Consensus 19 ~~~i~ikv~~-~~~~v-~~~i~~~~~l~kl~~~y~~~~g~~---------~~~~~f~fdG~~i~~~~Tpk~L~~ed~--- 84 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN--- 84 (209)
T ss_dssp CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGCEEEETTEECCTTCCTTTTTCCTT---
T ss_pred CCcEEEEEEc-CCCEE-EEEEeeCCHHHHHHHHHHHhhCCC---------hheEEEEECCEeccCCCChHHhhhccc---
Confidence 5788999986 66555 69999999999999999988 55 999999999999999999999999998
Q ss_pred CceEEEEEEEcCCc
Q 033473 82 GGVIIMHVVVQPSL 95 (118)
Q Consensus 82 ~~~~t~hlv~~~~~ 95 (118)
.++++.....+
T Consensus 85 ---d~I~~~~eq~G 95 (209)
T 3uf8_A 85 ---DIIEAHREQIG 95 (209)
T ss_dssp ---EEEEEECSCTT
T ss_pred ---ccchhhccccc
Confidence 56777666554
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.66 E-value=6e-06 Score=66.04 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=0.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
++.|+|+++- +|..+ .|.+..+++...|++..+++.. .+++++||+|.|+.|.++.|.+++++.+|
T Consensus 19 ~~~I~LKV~~-~g~~v-~FkIk~~t~l~kLm~aY~~r~G-------~~~~~~rFlFdG~rI~~~~TP~~L~MEDg----- 84 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQG-------KEMDSLRFLYDGIRIQADQTPEDLDMEDN----- 84 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcEE-EEEEecCChHHHHHHHHHHHhC-------CCcceEEEEECCeECCCCCChHHcCCCcc-----
Confidence 4678888875 56454 6999999999999999888832 22899999999999999999999999999
Q ss_pred eEEEEEEEcCCcccc
Q 033473 84 VIIMHVVVQPSLAKT 98 (118)
Q Consensus 84 ~~t~hlv~~~~~~~~ 98 (118)
.+|+++.+..++.+
T Consensus 85 -D~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 85 -DIIEAHREQIGGMR 98 (360)
T ss_dssp -------------CH
T ss_pred -chhhhhhccCchHH
Confidence 46888877766644
No 108
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.53 E-value=0.00094 Score=44.59 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=54.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecC--C-CCcccccCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILE--N-NKTVGQCKIPYG 78 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~--D-~~tL~~~~i~~g 78 (118)
....+|+||+.+|+.+ .-.|..++||.+|.+.|...... ......|+ |-.|.|. | ++||+++|+...
T Consensus 11 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~~-------~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps 82 (109)
T 2dzk_A 11 STIARIQFRLPDGSSF-TNQFPSDAPLEEARQFAAQTVGN-------TYGNFSLATMFPRREFTREDYKRRLLDLELAPS 82 (109)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSBHHHHHHHHHHHHTT-------SSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSE
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhccCC-------CCCceEEEcCCCCcCCcccccCCCHHHCCCCCc
Confidence 3578999999999765 68999999999999999987210 13445555 3466775 3 789999999865
Q ss_pred CCCCceEEEEEE
Q 033473 79 EVPGGVIIMHVV 90 (118)
Q Consensus 79 ~~~~~~~t~hlv 90 (118)
.++++.
T Consensus 83 ------a~L~v~ 88 (109)
T 2dzk_A 83 ------ASVVLL 88 (109)
T ss_dssp ------EEEEEE
T ss_pred ------eEEEEE
Confidence 566654
No 109
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.47 E-value=0.00066 Score=46.44 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=52.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEE--ecCeec--CC-CCcccccCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL--EN-NKTVGQCKIPY 77 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~-~p~~~e~~p~~~~~qrLI--~~Gk~L--~D-~~tL~~~~i~~ 77 (118)
+....|+||+.+|+.+ .-.|..++||.+|.+.|... .+ .....|+ |-.|.| +| +.||.++++..
T Consensus 41 ~~~t~IqIRlPdG~rl-~~rF~~~~tl~~V~~fV~~~~~~---------~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKRE-QITLPEQAKLLALVKHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCP 110 (124)
T ss_dssp SCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHHHCC---------TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEecCCCCcCCccCCCCCCHHHCCCCC
Confidence 4679999999999765 68999999999999999876 22 4556666 447888 34 79999999876
Q ss_pred C
Q 033473 78 G 78 (118)
Q Consensus 78 g 78 (118)
.
T Consensus 111 s 111 (124)
T 1wj4_A 111 Q 111 (124)
T ss_dssp S
T ss_pred c
Confidence 4
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.44 E-value=0.00051 Score=44.01 Aligned_cols=72 Identities=22% Similarity=0.385 Sum_probs=57.0
Q ss_pred ceEEEEEEe--CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 5 ELIDIKFRL--YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 5 ~~i~l~~~~--~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+.|+|++.+ -.|+ .+.+.++...||..|.+.+.+.+.-+ ..+.+--++|+.-.|.+|.++++|++|+|.+||
T Consensus 3 ~yI~ITidl~~y~~~-~~DLRIP~~~tvK~Li~~l~ea~~l~--~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 3 SYIDITIDLKHYNGS-VFDLRLSDYHPVKKVIDIAWQAQSVS--MPPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp CEEEEEEECTTTTCC-EEEEEEETTSBTTHHHHHHHHHSCCC--SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred cEEEEEEEeeccCCc-eEEEECCCchhHHHHHHHHHHHhCCC--cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 467778877 4553 45899999999999999999984321 222222589999999999999999999999996
No 111
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.42 E-value=0.0012 Score=44.03 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=55.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEE--ecCeecC--CCCcccccCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKILE--NNKTVGQCKIPYGE 79 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~-~p~~~e~~p~~~~~qrLI--~~Gk~L~--D~~tL~~~~i~~g~ 79 (118)
..++|.||+.+|+.+ .-.|..++||.+|.+.|... +. ....+|+ |=.|.|. .+.||+++||...
T Consensus 22 ~~~~IqiRlpdG~r~-~rrF~~~~tl~~v~~fv~~~~~~---------~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~- 90 (109)
T 2cr5_A 22 EVVTVALRCPNGRVL-RRRFFKSWNSQVLLDWMMKVGYH---------KSLYRLSTSFPRRALEVEGGSSLEDIGITVD- 90 (109)
T ss_dssp SEEEEEEECTTSCEE-EEEEESSSBTHHHHHHHHHHTCC---------TTTEEEECSSSCCBCCCCSSCBHHHHTCSSC-
T ss_pred CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCC-
Confidence 579999999999765 57999999999999999976 22 4556665 3467775 4799999999876
Q ss_pred CCCceEEEEEE
Q 033473 80 VPGGVIIMHVV 90 (118)
Q Consensus 80 ~~~~~~t~hlv 90 (118)
.+++|.
T Consensus 91 -----a~L~Ve 96 (109)
T 2cr5_A 91 -----TVLNVE 96 (109)
T ss_dssp -----EEEEEE
T ss_pred -----eEEEEE
Confidence 566654
No 112
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.35 E-value=0.0019 Score=42.60 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=55.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+.|+|+++ .+|..+ -|.+-.++....|.+..+++.- .+++.+|++|.|..+.++.|-+++++.+||
T Consensus 19 ~~~IniKV~-~~g~ev-~FkIK~tt~l~KL~~aYc~r~g-------v~~~sirFlfDG~rI~~~~TP~~L~meD~D 85 (95)
T 2l76_A 19 PRLFPLKIR-CRADLV-RLPLRMSEPLQSVVDHMATHLG-------VSPSRILLLFGETELSPTATPRTLKLGVAD 85 (95)
T ss_dssp CCCEEEEEE-CSSSEE-EEEECSSSCTHHHHHHHHHHHT-------SCGGGEEEEETTEECCTTSCHHHHTCCSSC
T ss_pred CCeEEEEEE-cCCcEE-EEEEecCChHHHHHHHHHhhcC-------CChhhEEEEECCcCCCCCCCHhHcCCCCCC
Confidence 456899998 456454 5899999999999988887722 239999999999999999999999999996
No 113
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.29 E-value=0.0015 Score=44.79 Aligned_cols=68 Identities=24% Similarity=0.385 Sum_probs=53.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecCC-CCcccccCCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN-NKTVGQCKIPYG 78 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~D-~~tL~~~~i~~g 78 (118)
+...+|+||+.||+.+ .-.|..++||.+|.+.|....+. . ......|+ |-.|.|+| +.||+++|+...
T Consensus 50 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~~----~--~~~~f~L~t~fPrk~l~d~~~TL~eagL~ps 120 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRL-VQKFNHSHRISDIRLFIVDARPA----M--AATSFVLMTTFPNKELADENQTLKEANLLNA 120 (127)
T ss_dssp SCCCCEEEEETTTTEE-EEECCSSCBHHHHHHHHHHHCSG----G--GTSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHhCcC----C--CCCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence 3568999999999765 68999999999999999987541 0 14456666 44778865 799999999865
No 114
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.26 E-value=0.0021 Score=50.40 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=54.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe------cCeecCCCCcccccCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS------SGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~------~Gk~L~D~~tL~~~~i~~g 78 (118)
..++|++.+. + .+..+.|++++||.++...|.+++|. ..+.+.++=-|.. .|+-|++++||+.|++.+|
T Consensus 2 ~~~~~~~~~~-~-~~~~~~f~~~~~v~~~~~~i~e~~~~---~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~ 76 (371)
T 3ivf_A 2 VALSLKISIG-N-VVKTMQFEPSTMVYDACRMIRERIPE---ALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNG 76 (371)
T ss_dssp CCEEEEEEET-T-EEEEEEECTTCBHHHHHHHHHTTCGG---GGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTT
T ss_pred ccEEEEEEec-c-eeEEEEECCCCCHHHHHHHHHHhccc---ccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCC
Confidence 4688999998 4 66689999999999999999999872 1112244545544 4778999999999999988
Q ss_pred C
Q 033473 79 E 79 (118)
Q Consensus 79 ~ 79 (118)
+
T Consensus 77 ~ 77 (371)
T 3ivf_A 77 D 77 (371)
T ss_dssp C
T ss_pred c
Confidence 6
No 115
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.25 E-value=4.4e-05 Score=60.68 Aligned_cols=78 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCc
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (118)
++.|+|+++- +|..+ .|.+..+++...|++..+++.. .+..++||+|.|+.|.+++|.+++++.+||
T Consensus 28 ~~~i~lkv~~-~~~~~-~~~i~~~~~~~~l~~~y~~~~g-------~~~~~~~f~f~G~~i~~~~Tp~~l~med~d---- 94 (389)
T 4da1_A 28 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQG-------KEMDSLRFLYDGIRIQADQAPEDLDMEDND---- 94 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEE-EEEECCCChHHHHHHHHHHHhC-------CCcceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 3668888875 56444 5999999999999999998833 239999999999999999999999999995
Q ss_pred eEEEEEEEcCCcc
Q 033473 84 VIIMHVVVQPSLA 96 (118)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (118)
+|+++....++
T Consensus 95 --~i~~~~~q~gg 105 (389)
T 4da1_A 95 --IIEAHREQIGG 105 (389)
T ss_dssp -------------
T ss_pred --Eeeeeeccccc
Confidence 45655544433
No 116
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.80 E-value=0.0014 Score=45.30 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=51.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCc------c--------------------CCCCC--ceeEE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKT------I--------------------VPKAV--TEIKL 57 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e------~--------------------~p~~~--~~qrL 57 (118)
.|++++.|| .+..+.|+.+.+|.+++..|... ++..-| . .|..- ..+||
T Consensus 13 ~LkV~llDg-~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDG-TVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTS-CEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCC-CEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 489999999 55689999999999999999998 442200 0 00001 24555
Q ss_pred Ee--cCeecCCCCcccccCCCCCC
Q 033473 58 IS--SGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 58 I~--~Gk~L~D~~tL~~~~i~~g~ 79 (118)
-. .+..|+++.||.+.||.+++
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTS
T ss_pred cccCCCCcccCCCcHHHcCCCCCC
Confidence 22 35789999999999999983
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.43 E-value=0.027 Score=37.98 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=50.3
Q ss_pred ceEEEEEEeCC-CCeeeeEEeCCcchHHHHHHHHHhhCCCCCc-cCCCCCceeEEEe----cCeecCCCC----------
Q 033473 5 ELIDIKFRLYD-GSDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS----SGKILENNK---------- 68 (118)
Q Consensus 5 ~~i~l~~~~~~-g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e-~~p~~~~~qrLI~----~Gk~L~D~~---------- 68 (118)
..+.|.+...+ +.+..++.+-..+||.++|++|...+=++.. ...+.++++.|=+ +|++|.|..
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcce
Confidence 45666666543 2233467888999999999999988322211 1112478888866 356786632
Q ss_pred ---cccccCCCCCCCCCceEEEEEE
Q 033473 69 ---TVGQCKIPYGEVPGGVIIMHVV 90 (118)
Q Consensus 69 ---tL~~~~i~~g~~~~~~~t~hlv 90 (118)
||+.|+|++| .+|-++
T Consensus 90 rLNTL~HY~V~dg------atl~l~ 108 (111)
T 4e71_A 90 RVNTLMHYNVRDG------ATLILS 108 (111)
T ss_dssp CCCBHHHHTCCTT------CEEEEE
T ss_pred EecchhhcCCCCC------CEEEEE
Confidence 6777999999 667665
No 118
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.08 E-value=0.042 Score=38.35 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=53.8
Q ss_pred ceEEEEEEeCCC-----CeeeeEEeCCcchHHHHHHHHHhhCCCCCc-cCCCCCceeEEEe----cCe-ecCCC--C---
Q 033473 5 ELIDIKFRLYDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS----SGK-ILENN--K--- 68 (118)
Q Consensus 5 ~~i~l~~~~~~g-----~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e-~~p~~~~~qrLI~----~Gk-~L~D~--~--- 68 (118)
..+.|.+....| .+..++.+=..+||.++|++|.+.+=++.. ..-+.++++-|=+ +|+ +|.|. .
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~ 102 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 102 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccc
Confidence 456666655432 233478888999999999999988222211 1113577888866 354 47663 2
Q ss_pred --------cccccCCCCCCCCCceEEEEEEEc
Q 033473 69 --------TVGQCKIPYGEVPGGVIIMHVVVQ 92 (118)
Q Consensus 69 --------tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
||+.|+|++| .+|-++.+
T Consensus 103 ~~~wkrLNTL~HY~V~Dg------a~l~l~~~ 128 (138)
T 2r2o_A 103 QGLWRRLNTLQHYKVPDG------ATVALVPC 128 (138)
T ss_dssp ETTEEECCBHHHHTCCTT------CEEEEEEC
T ss_pred cCCceeecchhccCCCCC------CEEEEEEC
Confidence 7888999999 67777644
No 119
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.72 E-value=0.12 Score=35.62 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=46.0
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCc-cCCCCCceeEEEe-cC---e-ecCCC-------------CcccccCCCCCCC
Q 033473 20 GPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS-SG---K-ILENN-------------KTVGQCKIPYGEV 80 (118)
Q Consensus 20 ~~~~v~~~~tV~~LK~~I~~~~p~~~e-~~p~~~~~qrLI~-~G---k-~L~D~-------------~tL~~~~i~~g~~ 80 (118)
.++.+=..+||.++|++|.+.+=++.. ..-+.++++.|=| .| + +|.|. .||+.|+|++|
T Consensus 19 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dg-- 96 (127)
T 3h6n_A 19 LSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEG-- 96 (127)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTT--
T ss_pred eeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCC--
Confidence 467888999999999999988322211 1113578888876 34 4 47652 26777999999
Q ss_pred CCceEEEEEEEc
Q 033473 81 PGGVIIMHVVVQ 92 (118)
Q Consensus 81 ~~~~~t~hlv~~ 92 (118)
.+|-++.+
T Consensus 97 ----atv~l~~~ 104 (127)
T 3h6n_A 97 ----ASLAMSLI 104 (127)
T ss_dssp ----CEEEEEEC
T ss_pred ----CEEEEEEc
Confidence 67777644
No 120
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.80 E-value=0.18 Score=34.22 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=50.7
Q ss_pred ceEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCCCc-cCCCCCceeEEEe-cC---e-ecCCC---------
Q 033473 5 ELIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS-SG---K-ILENN--------- 67 (118)
Q Consensus 5 ~~i~l~~~~~~g--~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e-~~p~~~~~qrLI~-~G---k-~L~D~--------- 67 (118)
..+.|.+...+| ....++.+-..+||.++|++|...+=++.. ..-+.++++.|=| .| + +|.|.
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 445566554432 222467788999999999999988322211 1112478888866 44 3 46552
Q ss_pred ----CcccccCCCCCCCCCceEEEEEEEc
Q 033473 68 ----KTVGQCKIPYGEVPGGVIIMHVVVQ 92 (118)
Q Consensus 68 ----~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
.||+.|+|++| .+|-++.+
T Consensus 92 wkrLNTL~HY~V~dg------atl~l~~~ 114 (117)
T 4e74_A 92 WKRLNTLAHYQVPDG------SVVALVSK 114 (117)
T ss_dssp CCCCCBHHHHTCCTT------CEEEEEEC
T ss_pred ceEeccccccCCCCC------CEEEEEeC
Confidence 25667999999 67777644
No 121
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.02 E-value=0.31 Score=31.55 Aligned_cols=71 Identities=8% Similarity=0.060 Sum_probs=57.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (118)
+|.+...+|... .+.+.|++++.++=+...+++- .++++-.|-|.+|.|+=+.++.-.||++| ..+
T Consensus 11 ~v~Vl~~n~rr~-~VKvtp~t~L~~VL~eaC~K~g-------l~~~~~~Lkh~~k~lDLSlpfRlsgLpnn------AkL 76 (90)
T 2al3_A 11 AVSVLAPNGRRH-TVKVTPSTVLLQVLEDTCRRQD-------FNPSEYDLKFQRTVLDLSLQWRFANLPNN------AKL 76 (90)
T ss_dssp CEEEECTTSCEE-EECCCTTSBHHHHHHHHHHHTT-------CCGGGCEEEETTEEESSSCBHHHHCCCSS------CEE
T ss_pred EEEEEcCCCcEE-EEEECCCCCHHHHHHHHHHHhC-------CChhhCeEEeCCEeccccceeEecCCCCC------CEE
Confidence 678888899654 7999999999997666666643 23788899999999988999999999999 667
Q ss_pred EEEEc
Q 033473 88 HVVVQ 92 (118)
Q Consensus 88 hlv~~ 92 (118)
-++..
T Consensus 77 ELv~~ 81 (90)
T 2al3_A 77 EMVPV 81 (90)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 77633
No 122
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=92.73 E-value=0.7 Score=39.34 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=52.4
Q ss_pred ceEEEEEEeCCC-----CeeeeEEeCCcchHHHHHHHHHhhCCCCCc-cCCCCCceeEEEe----cCe-ecCCCC-----
Q 033473 5 ELIDIKFRLYDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS----SGK-ILENNK----- 68 (118)
Q Consensus 5 ~~i~l~~~~~~g-----~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e-~~p~~~~~qrLI~----~Gk-~L~D~~----- 68 (118)
..+.|.+...+| .+..++.+-..+||.++|++|...+=++.. ...+.++++.|=+ .|+ +|.|..
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~ 335 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 335 (644)
T ss_dssp CEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred eeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCcccee
Confidence 445666655433 123468888999999999999977222211 1123578888866 344 576643
Q ss_pred --------cccccCCCCCCCCCceEEEEEEEc
Q 033473 69 --------TVGQCKIPYGEVPGGVIIMHVVVQ 92 (118)
Q Consensus 69 --------tL~~~~i~~g~~~~~~~t~hlv~~ 92 (118)
||+.|+|++| .+|-|+.+
T Consensus 336 ~~~wkrLNTL~HY~V~dg------a~v~L~p~ 361 (644)
T 3hm6_X 336 QGLWRRLNTLQHYKVPDG------ATVALVPC 361 (644)
T ss_dssp ETTEEECCBTTTTTCCTT------CEEEEEEC
T ss_pred cCcceeecchhhcCCCCC------cEEEEEec
Confidence 7888999999 56666544
No 123
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=92.62 E-value=1.4 Score=30.14 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=47.3
Q ss_pred ceEEEEEEe---CCC-----CeeeeEEeCCcchHHHHHHHHHhhCCCCCccCC--CCCceeEEEe-cC---eecCCC---
Q 033473 5 ELIDIKFRL---YDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVP--KAVTEIKLIS-SG---KILENN--- 67 (118)
Q Consensus 5 ~~i~l~~~~---~~g-----~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p--~~~~~qrLI~-~G---k~L~D~--- 67 (118)
..+.|.+.. ..+ ....++.+-..+||.++|++|...+=++ .+.| ..++++.|=| .| ++|.|.
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~-k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSK-NGSPYGLQLNEIGLELQMGTRQKELLDIDSS 96 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHH-HSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhcc-CCCcCCCCccccceEEecCCCcceeeccCCc
Confidence 345777666 332 2334678889999999999999772100 0111 1367777755 33 355442
Q ss_pred -----------CcccccCCCCCCCCCceEEEEEE
Q 033473 68 -----------KTVGQCKIPYGEVPGGVIIMHVV 90 (118)
Q Consensus 68 -----------~tL~~~~i~~g~~~~~~~t~hlv 90 (118)
.||+.|+|++| .++-++
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dg------atlal~ 124 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNG------STIKVF 124 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTT------CEEEEE
T ss_pred ceEecCCeeEeccccccCCCCC------CEEEEe
Confidence 14556888888 566554
No 124
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.43 E-value=0.54 Score=34.36 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=44.4
Q ss_pred EEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-eeEE--Ee-cCe--ecCC-CCcccccCCCCC
Q 033473 7 IDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKL--IS-SGK--ILEN-NKTVGQCKIPYG 78 (118)
Q Consensus 7 i~l~~~~~~g~-~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~-~qrL--I~-~Gk--~L~D-~~tL~~~~i~~g 78 (118)
+.++|...+.. ....+.++..+||.+|++.+...+- +| .+ ..|| +| .++ .|+| +.||++++|.+|
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~-----i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~ 200 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFS-----IP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQG 200 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTT-----CC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTT
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhC-----CC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCC
Confidence 34444443321 3345788999999999999999943 11 54 6888 34 232 6666 679999999988
No 125
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=91.66 E-value=1.7 Score=31.99 Aligned_cols=65 Identities=15% Similarity=0.314 Sum_probs=44.0
Q ss_pred EEEEEEeCCC-CeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-eeEEEe-c----CeecCC-CCcccccCCCCC
Q 033473 7 IDIKFRLYDG-SDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLIS-S----GKILEN-NKTVGQCKIPYG 78 (118)
Q Consensus 7 i~l~~~~~~g-~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~-~qrLI~-~----Gk~L~D-~~tL~~~~i~~g 78 (118)
+.++|...+. .....+.++..+||.+|++.+...+- +| .+ ..||-. . ...|.| +.||++++|.+|
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~-----i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~ 212 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFN-----IP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQG 212 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTT-----CC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTT
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhC-----CC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCC
Confidence 3444444332 12334678999999999999999843 11 54 688843 2 236665 699999999988
No 126
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=90.94 E-value=1.8 Score=36.83 Aligned_cols=83 Identities=12% Similarity=0.232 Sum_probs=53.0
Q ss_pred ceEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCCCc-cCCCCCceeEEEe----cCe-ecCCC---------
Q 033473 5 ELIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS----SGK-ILENN--------- 67 (118)
Q Consensus 5 ~~i~l~~~~~~g--~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e-~~p~~~~~qrLI~----~Gk-~L~D~--------- 67 (118)
..+.|.+...+| ....++.+-..+||.++|++|...+=++.. ..-+.++++.|=+ +|+ +|.|.
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCc
Confidence 446666655443 233468888999999999999988222211 1113578888865 344 56552
Q ss_pred ----CcccccCCCCCCCCCceEEEEEEEcC
Q 033473 68 ----KTVGQCKIPYGEVPGGVIIMHVVVQP 93 (118)
Q Consensus 68 ----~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (118)
.||+.|+|++| .+|-|+.+.
T Consensus 312 wkrLNTL~HY~V~Dg------a~v~L~p~~ 335 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDG------SLVALVPKQ 335 (627)
T ss_dssp EEECCBTTTTTCCTT------CEEEEEEC-
T ss_pred eeEecchhhcCCCCC------ceEEEEecc
Confidence 26778999999 667776554
No 127
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=87.69 E-value=1 Score=29.94 Aligned_cols=71 Identities=10% Similarity=0.197 Sum_probs=46.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCceeEEEe---cCee--c-CCCCcccccCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLIS---SGKI--L-ENNKTVGQCKI 75 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~---~p~~~e~~p~~~~~qrLI~---~Gk~--L-~D~~tL~~~~i 75 (118)
+.+.|.+.+.+|.-+ .++++.++|+.++|+.++++ .|-... . .+++.=.+.+ .|.+ | ++++-|.+.++
T Consensus 18 ~~v~v~~LlPnGi~i-~l~~~~~~tl~eiK~~lw~eA~~~PL~~~-L-~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~p 94 (108)
T 2v1y_A 18 PRILVECLLPNGMIV-TLECLREATLITIKHELFKEARKYPLHQL-L-QDESSYIFVSVTQEAEREEFFDETRRLCDLRL 94 (108)
T ss_dssp SEEEEEEECTTSCEE-EEEEETTCBHHHHHHHHHHHGGGSTTGGG-C-CCGGGCEEEEEBTTSCEEEECCTTSBGGGSCB
T ss_pred CcEEEEEEcCcEEEE-EEEeeccccHHHHHHHHHHHHHhCchHHH-h-CCccceEEEEecCCceEEEeEcCceEEEeccc
Confidence 679999999999544 79999999999999999988 321100 0 1122222222 1343 6 44588888876
Q ss_pred CCC
Q 033473 76 PYG 78 (118)
Q Consensus 76 ~~g 78 (118)
-.+
T Consensus 95 f~p 97 (108)
T 2v1y_A 95 FQP 97 (108)
T ss_dssp SSS
T ss_pred cce
Confidence 644
No 128
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=84.90 E-value=2.8 Score=26.76 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=30.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p 42 (118)
.++.|+|...+ |+..+.++++.+..+|+.+|..++.
T Consensus 11 ~~~KVK~yy~D--DIiAIrvP~di~~~~L~dKi~~RLk 46 (85)
T 1ip9_A 11 KTTKIKFYYKD--DIFALMLKGDTTYKELRSKIAPRID 46 (85)
T ss_dssp CCEEEEECBTT--CCEEEEECSCCCHHHHHHHHHHHHT
T ss_pred CceEEEEEecC--cEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56677776665 6888999999999999999999965
No 129
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=81.91 E-value=7.7 Score=24.62 Aligned_cols=70 Identities=6% Similarity=0.070 Sum_probs=48.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCee--cCCCCcccccCCCCCC
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI--LENNKTVGQCKIPYGE 79 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~--L~D~~tL~~~~i~~g~ 79 (118)
-|.-++...=-..-+.++.++|+.++-++++..-= +.- .++.+.-+|.-++|+. |.++.|+++.||..-+
T Consensus 5 Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~V-Grr-v~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 5 PVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCV-NRR-VAPREGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTB-TTT-BCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred ceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhc-cee-eCCCCCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 34444443322234788999999999999997610 000 1122458999999997 9999999999997553
No 130
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=81.39 E-value=5.2 Score=25.47 Aligned_cols=33 Identities=9% Similarity=0.241 Sum_probs=25.8
Q ss_pred EEEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhh
Q 033473 8 DIKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSD 40 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~-~~tV~~LK~~I~~~ 40 (118)
.|.|++.+..+...+.|+. .-||.+||+.|.++
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~ 41 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGR 41 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHH
Confidence 3556667777777788874 56999999999988
No 131
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=81.20 E-value=5.5 Score=25.07 Aligned_cols=54 Identities=9% Similarity=0.112 Sum_probs=35.6
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCC-----CCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVP-----KAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 20 ~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p-----~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
..+++++..||.+|.+.+..++| ++...- .-.....+.-+|+.... +..+.+||
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p-~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGD 87 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHE-KFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGD 87 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCG-GGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTC
T ss_pred EEEECCCCCCHHHHHHHHHhHCh-hHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCC
Confidence 35788888999999999998865 211100 00245677888887753 45677784
No 132
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=80.79 E-value=2.3 Score=25.32 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=33.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcee--EEEecCeecCCCCcccccCCCCCC
Q 033473 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEI--KLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~q--rLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.++++...||.+|.+.+...+|. ...+ .+..+|+....+ ..+++||
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~p~--------~~~v~~~v~vNg~~v~~~-----~~L~~gD 66 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFERYPQ--------INNKKFQVAVNEEFVQKS-----DFIQPND 66 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHHCGG--------GTTCCCEEEETTEEECTT-----SEECTTC
T ss_pred EEECCCCCCHHHHHHHHHHHCcc--------hhcceEEEEECCEECCCC-----CCcCCCC
Confidence 46677888999999999888661 1334 788899988654 4566774
No 133
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=80.46 E-value=15 Score=33.13 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=56.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCceeEEEecCe-----ec-CCCCcccccC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISSGK-----IL-ENNKTVGQCK 74 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~---~p~~~e~~p~~~~~qrLI~~Gk-----~L-~D~~tL~~~~ 74 (118)
++.|.|-|.+++|.-+ .++++.++|+.++|+.|+++ .|-. ..-.++++-.+.+-.+ .+ ++.+.|.+..
T Consensus 49 ~~~v~vd~LLPnGi~i-~~~v~~~~Tl~~iK~~lw~~A~~~pl~--~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~ 125 (1092)
T 2y3a_A 49 DGAISVDFLLPTGIYI-QLEVPREATISYIKQMLWKQVHNYPMF--NLLMDIDSYMFACVNQTAVYEELEDETRRLCDVR 125 (1092)
T ss_dssp CSEEEEEEECTTCCEE-EEEEETTCBHHHHHHHHHHHGGGSTTT--TSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGC
T ss_pred CCceEEEEECCCceEE-EEEecCcccHHHHHHHHHHHHHhCCch--hccCCcceeEEEEecCCceEEEeecCceeeEeec
Confidence 4779999999999554 89999999999999999988 3311 1113467777766332 35 5568888876
Q ss_pred CCCCCCCCceEEEEEEEc
Q 033473 75 IPYGEVPGGVIIMHVVVQ 92 (118)
Q Consensus 75 i~~g~~~~~~~t~hlv~~ 92 (118)
.-.+ .+.|+.+
T Consensus 126 ~~~p-------~l~lve~ 136 (1092)
T 2y3a_A 126 PFLP-------VLKLVTR 136 (1092)
T ss_dssp BSSS-------CEEEEES
T ss_pred ccce-------EEEEEec
Confidence 5432 4777766
No 134
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=79.96 E-value=3.9 Score=26.68 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=44.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC----CCCC---ccCCCCCceeEEEecCeecCCCCccccc
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW----PKGK---TIVPKAVTEIKLISSGKILENNKTVGQC 73 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~----p~~~---e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (118)
..+.|||-+.||+.. .+.|++++|+.++-+.+.++. ..+| |..| + ++.-|.|+|.+.|-+.
T Consensus 8 ~k~vvkvf~~Dgssk-si~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P---~----L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 8 RPHVVKVYSEDGACR-SVEVAAGATARHVCEMLVQRAHALSDETWGLVECHP---H----LALERGLEDHESVVEV 75 (100)
T ss_dssp SCEEEEEEETTSCEE-EEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEET---T----TTEEEEECSSSCHHHH
T ss_pred CCEEEEEEecCCCEE-EEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecC---C----CCcEEeccCchhHHHH
Confidence 568999999999654 899999999999999999882 2223 2222 1 1234678887776655
No 135
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=79.90 E-value=6.3 Score=24.84 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=35.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk 62 (118)
.+.|++... .+..+.++++.+..+|+++|.++++ .+++...|-|.-+
T Consensus 5 ~~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~-------l~~~~~~LsYk~~ 51 (83)
T 1oey_A 5 AYTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLE-------LRLEHTKLSYRPR 51 (83)
T ss_dssp CEEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTT-------CCGGGCCEEECCT
T ss_pred cEEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhC-------CCcceeEEEeeCC
Confidence 355555555 3457899999999999999999965 2278888888654
No 136
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=78.62 E-value=7.3 Score=23.05 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=32.2
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.++++...||.+|.+.+. ++ .....+..+|+++..+. .+.+||
T Consensus 17 ~~~~~~~~tv~~Ll~~l~--~~---------~~~v~vavN~~~v~~~~-----~L~~gD 59 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGELE--IP---------IETVVVKKNGQIVIDEE-----EIFDGD 59 (70)
T ss_dssp EEEESSCCBHHHHHHHTT--CC---------TTTEEEEETTEECCTTS-----BCCTTC
T ss_pred eEECCCCCcHHHHHHHhC--CC---------CCCEEEEECCEECCCcc-----cCCCCC
Confidence 478888899999998874 22 55667889999996654 566774
No 137
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=78.20 E-value=5 Score=24.55 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=34.8
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCcc-CCCC----CceeEEEecCeecCCCCcccccCCCCCC
Q 033473 20 GPFRYSSASTVDMLKQRIVSDWPKGKTI-VPKA----VTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 20 ~~~~v~~~~tV~~LK~~I~~~~p~~~e~-~p~~----~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
..++++...||.+|.+.+..++| ++.. .-.. ....++.-+|+....+ .-+.+||
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p-~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gD 78 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHP-ALESRVFGDDGELYDHINVLRNGEAAALG-----EATAAGD 78 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCG-GGHHHHBCTTSCBCTTSEEEETTEECCTT-----SBCCTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHCc-HHHHHHhccCCcccccEEEEECCEECCCC-----cccCCCC
Confidence 35788788999999999998876 1110 0000 1236777788877653 4566774
No 138
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=76.56 E-value=4.1 Score=24.81 Aligned_cols=49 Identities=10% Similarity=0.257 Sum_probs=33.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCC
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~ 68 (118)
.|++++. |.....+++++.+||++|=+.+. +| ++..-...+|+++.-+.
T Consensus 2 ~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~Lg--l~---------~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVV-GEETSEVAVDDDGTYADLVRAVD--LS---------PHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECS-SSSEEEEECSTTCSHHHHHHTTC--CC---------SSCCCEECCCCCCCTTS
T ss_pred EEEEEEe-CccceeEEcCCCCcHHHHHHHcC--CC---------cceEEEEECCEECCHHH
Confidence 3566666 44445689999999998754432 44 56666788999885554
No 139
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=74.65 E-value=14 Score=23.43 Aligned_cols=57 Identities=7% Similarity=0.125 Sum_probs=42.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecCCCCcccccCCCCC
Q 033473 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYG 78 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G--k~L~D~~tL~~~~i~~g 78 (118)
-+.++.++|+.++-++++..-= +.-..|.+..-+|..+.| +.|..+.|+++.||..-
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsV-GrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~ 74 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSI-NRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPT 74 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTB-TTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTT
T ss_pred EEEecCCCcHHHHHHHHhhhhc-ceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCc
Confidence 4788999999999999997600 000111224468999999 99999999999999754
No 140
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.25 E-value=10 Score=24.36 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=50.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE---ecCeecCCCCcccccCCCC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPY 77 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI---~~Gk~L~D~~tL~~~~i~~ 77 (118)
|.+++|.+.......+ .+.|+|..+..+|--.|.++.. .+++..-|. -++..|+=+++|.+|||.+
T Consensus 8 E~TvRLvVNy~~tQKt-VvRVSP~vpL~ellp~IC~Kce-------fdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKT-IVRVSPHASLQELAPIICSKCE-------FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEE-EEEECSSSCTTTHHHHHHHHTT-------CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCccee-EEEeCCCCcHHHHHHHHhhccc-------CChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 5788888888765344 6899999999999999999843 225555554 3456788899999999985
No 141
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=73.34 E-value=6.9 Score=22.76 Aligned_cols=29 Identities=17% Similarity=0.065 Sum_probs=22.1
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033473 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
+++.+.+|+ ..+++..+|+.+|-+.+...
T Consensus 3 i~i~~p~g~---~~~~~~g~T~~dla~~i~~~ 31 (73)
T 2kmm_A 3 VMVFTPKGE---IKRLPQGATALDFAYSLHSD 31 (73)
T ss_dssp EEEECTTCC---EEEECTTCBHHHHHHHHCSH
T ss_pred EEEEcCCCC---EEEcCCCCcHHHHHHHHhhc
Confidence 566677883 46889999999998887544
No 142
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=68.43 E-value=36 Score=25.71 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=38.1
Q ss_pred eCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCe-ecCC-CCcccccC
Q 033473 13 LYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK-ILEN-NKTVGQCK 74 (118)
Q Consensus 13 ~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~Gk-~L~D-~~tL~~~~ 74 (118)
+... ....+.+.+..|+.++++.++++ ++ ++.|.|+|.|. +.-| ..+.+++.
T Consensus 318 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~i~---------~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 318 LQQM-TAHKIYIHSYNTATIFHELVYKQTKII---------SSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTTT-EEEEEEECTTCBHHHHHHHHHHHHCCC---------STTEEEESSSSEECCCSSCBTTSSC
T ss_pred eccc-eEEEEEcCchhHHHHHHHHHHHhcCCC---------hhhhHHHhcCCCCCCCCCCccccCC
Confidence 3344 55678889999999999999988 44 89999999994 4434 34444443
No 143
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=65.55 E-value=43 Score=25.57 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=48.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC---------eecCCCCcccccCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---------KILENNKTVGQCKI 75 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~G---------k~L~D~~tL~~~~i 75 (118)
..+.+++.+.||+. ..+.+++++|+.+|=+.|.+++- . .+.+..-|.+.. +.|+-++++.+-+.
T Consensus 84 ~~~~~~V~l~dg~~-~~~~vd~~tt~~el~~~v~~~l~-----L-~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 84 KQRPLKIRMLDGTV-KTIMVDDSKTVTDMLMTICARIG-----I-TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp CEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHHHTT-----C-SCGGGEEEECCC----------CCCTTSBTGGGTC
T ss_pred ceeEEEEECcCCCE-EEEEECCCCCHHHHHHHHHHHcC-----C-CCccccEEEEEecccccchHHHHHhcCchhHhhCC
Confidence 34778899999965 47999999999999999999832 0 014444554421 35555666665544
Q ss_pred CCCCCCCceEEEEEEEc
Q 033473 76 PYGEVPGGVIIMHVVVQ 92 (118)
Q Consensus 76 ~~g~~~~~~~t~hlv~~ 92 (118)
... .++++-++
T Consensus 157 ~~~------~~l~frvK 167 (371)
T 3ivf_A 157 EEH------ETLLLRRK 167 (371)
T ss_dssp CTT------CEEEEEEC
T ss_pred CCC------ceEEEEEE
Confidence 322 34666544
No 144
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=62.13 E-value=24 Score=23.02 Aligned_cols=24 Identities=13% Similarity=0.010 Sum_probs=19.1
Q ss_pred eEEeCC---cchHHHHHHHHHhhCCCC
Q 033473 21 PFRYSS---ASTVDMLKQRIVSDWPKG 44 (118)
Q Consensus 21 ~~~v~~---~~tV~~LK~~I~~~~p~~ 44 (118)
.++++. ..||.+|-+.|.+++|..
T Consensus 33 ~vel~~~~~~~TV~~Ll~~L~~~~~~~ 59 (114)
T 1wgk_A 33 QVALPGQEEPWDIRNLLVWIKKNLLKE 59 (114)
T ss_dssp EEEECCCSSCCBHHHHHHHHTTTTCCS
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHccch
Confidence 577773 369999999999998754
No 145
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=61.87 E-value=10 Score=28.44 Aligned_cols=75 Identities=12% Similarity=-0.039 Sum_probs=48.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec---C--eecCCCCcccccCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPYGE 79 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~g~ 79 (118)
..+.+++.+.||+.. .+++++.+|+.+|=+.|.+.+- . .+.+..=|.|. | ..|+.++.|.+.... .
T Consensus 16 ~~~~~~V~lldgt~~-~~~vd~~tt~~el~~~v~~~l~-----L-~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~-~- 86 (296)
T 3qij_A 16 FQGHCKVSLLDDTVY-ECVVEKHAKGQDLLKRVCEHLN-----L-LEEDYFGLAIWDNATSKTWLDSAKEIKKQVRG-V- 86 (296)
T ss_dssp -CCEEEEECTTSCEE-EEECCTTCBHHHHHHHHHHHHT-----C-SSGGGEEEEEEEETTEEEECCTTSBHHHHC-----
T ss_pred ceEEEEEEccCCCEE-EEEECCCCCHHHHHHHHHHHcC-----C-CCcceeEEEEEcCCCccchhccchhHHHhcCC-C-
Confidence 568899999999654 8999999999999999999832 0 01333334332 2 357777777654321 1
Q ss_pred CCCceEEEEEEEc
Q 033473 80 VPGGVIIMHVVVQ 92 (118)
Q Consensus 80 ~~~~~~t~hlv~~ 92 (118)
+.++++-++
T Consensus 87 ----~~~l~frvk 95 (296)
T 3qij_A 87 ----PWNFTFNVK 95 (296)
T ss_dssp ----CCEEEEEES
T ss_pred ----CcEEEEEEE
Confidence 245666555
No 146
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=60.22 E-value=72 Score=26.37 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=52.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec---C--eecCCCCcccccCCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPYGE 79 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~g~ 79 (118)
..+.+++.+.|| .+ .+.+++++|+.+|=..|...+- . .+.+..=|.|. | ..|+.+++|.+.++..+
T Consensus 3 k~i~v~V~llDg-t~-e~~vd~~tt~~ell~~V~~~Lg-----L-~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~- 73 (575)
T 2i1j_A 3 KSMNVRVTTMDA-EL-EFAIQQTTTGKQLFDQVVKTIG-----L-REVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKE- 73 (575)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHT-----C-CCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCC-
T ss_pred ceEEEEEEeCCC-eE-EEEECCCCCHHHHHHHHHHHcC-----C-CCccceeEEEEecCcchhHhhccccHHHhcccCC-
Confidence 468899999999 54 6999999999999999998832 0 01344444442 2 36677778777655433
Q ss_pred CCCceEEEEEEEcC
Q 033473 80 VPGGVIIMHVVVQP 93 (118)
Q Consensus 80 ~~~~~~t~hlv~~~ 93 (118)
.+..+++-++-
T Consensus 74 ---~~~~L~FRvkf 84 (575)
T 2i1j_A 74 ---NPLQFKFRAKF 84 (575)
T ss_dssp ---SSEEEEEEESS
T ss_pred ---CCeEEEEEEEE
Confidence 23567776663
No 147
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=59.44 E-value=4.2 Score=24.61 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=30.7
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
++++++.+||.+|.+.+. ++ .....+..+|++...+ ..|.+||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~--~~---------~~~v~VavNg~~v~~~-----~~L~dGD 66 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG--FN---------TESAIAKVNGKVVLED-----DEVKDGD 66 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT--CS---------SCSSCEEETTEEECSS-----SCCCSSC
T ss_pred EEECCCCCcHHHHHHHhC--CC---------CcCEEEEECCEECCCC-----CCcCCCC
Confidence 467788889999987654 33 5556788899988655 4566665
No 148
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=58.74 E-value=53 Score=24.34 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=52.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe--cCe--ecCCCCcccccCCCCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS--SGK--ILENNKTVGQCKIPYG 78 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~--~Gk--~L~D~~tL~~~~i~~g 78 (118)
..+.+++.+.|| ++ .+.+++++|+.+|=+.|.+. +. +.+.-=|.| .|. .|+.++.|.+..+..+
T Consensus 21 ~~~~~~V~lldg-~~-~~~v~~~t~~~el~~~v~~~l~L~--------e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~ 90 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EM-EFNCEMKWKGKDLFDLVCRTLGLR--------ETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKE 90 (314)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHTCC--------CGGGEEEEEEETTEEEECCTTSBGGGSSCCCS
T ss_pred CeeEEEEEeCCc-eE-EEEeCCCCcHHHHHHHHHHHhCCC--------CCccceEEEEeCCcCeeCCCccCHHHcCCCCC
Confidence 568899999999 65 69999999999999999988 33 134444433 333 5787888887655433
Q ss_pred CCCCceEEEEEEEc
Q 033473 79 EVPGGVIIMHVVVQ 92 (118)
Q Consensus 79 ~~~~~~~t~hlv~~ 92 (118)
.+..+++-++
T Consensus 91 ----~~~~l~fr~k 100 (314)
T 1h4r_A 91 ----EPVTFHFLAK 100 (314)
T ss_dssp ----SSEEEEEEES
T ss_pred ----CCEEEEEEEE
Confidence 2356676655
No 149
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=58.47 E-value=20 Score=21.10 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=30.3
Q ss_pred CCcchHHHHHHHHHhhCCCCCc-cCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 25 SSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 25 ~~~~tV~~LK~~I~~~~p~~~e-~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+..||.+|.+.+..+.| ++. ..+ .....+..+|+.... +..+.+||
T Consensus 23 ~~~~tv~~ll~~L~~~~p-~~~~~l~--~~~~~v~vN~~~v~~-----~~~l~~gD 70 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSD-RWALALE--DGKLLAAVNQTLVSF-----DHPLTDGD 70 (81)
T ss_dssp SCCSBHHHHHHHHHTTCH-HHHHHHC--CTTCEEEETTEECCT-----TCBCCTTC
T ss_pred CCCCCHHHHHHHHHHHCh-hHHHHhc--CCCEEEEECCEECCC-----CCCCCCCC
Confidence 467899999999987754 111 011 234568888887753 34577774
No 150
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=57.77 E-value=9.9 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=25.8
Q ss_pred eEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEec
Q 033473 21 PFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISS 60 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~~ 60 (118)
++.|-.++|+.+|++.|++. +| +++|||-..
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~---------~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFP---------QDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCC---------GGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHHhCCC---------cccEEEEEe
Confidence 46777899999999999998 55 999999543
No 151
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=56.92 E-value=12 Score=31.80 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=39.9
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe-ecCCCCcccccCC
Q 033473 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-ILENNKTVGQCKI 75 (118)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk-~L~D~~tL~~~~i 75 (118)
..+ ....+.+.++.|+.+|++.|.++. .+| ++.|.||+.+. .|+.....++|.+
T Consensus 319 ~~~-~~~~~~i~~~~tl~~l~~~i~~~T-----~i~--~~~q~~~~~~~~~~~p~~~~~~~~~ 373 (676)
T 3qa8_A 319 VSG-RVHTYPVTENENLQNLKSWLQQDT-----GIP--EEEQELLQASGLALNSAQPLTQYVI 373 (676)
T ss_dssp SSS-CCCEEECCTTCCHHHHHHHHHTTS-----CCC--STTCEEESSSSCCCCTTSCGGGSCC
T ss_pred ccc-ccceeecCCCccHHHHHHHHHHHh-----CCC--HHHHHHHhccCCCCCCCcchhhhee
Confidence 344 445789999999999999999982 222 88899988765 5566667777643
No 152
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=54.50 E-value=18 Score=20.88 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+|+ +++++...||.+|.+.+. ++ .....+..+|+++..+. ..+..+.+||
T Consensus 5 vNg~---~~~~~~~~tv~~ll~~l~--~~---------~~~v~vavN~~~v~~~~-~~~~~L~~gD 55 (66)
T 1f0z_A 5 FNDQ---AMQCAAGQTVHELLEQLD--QR---------QAGAALAINQQIVPREQ-WAQHIVQDGD 55 (66)
T ss_dssp ESSC---EECCCTTCCHHHHHHHHT--CC---------CSSEEEEETTEEECHHH-HTTCCCCTTE
T ss_pred ECCE---EEEcCCCCcHHHHHHHcC--CC---------CCCEEEEECCEECCchh-cCCcCCCCCC
Confidence 4563 468888899999998874 33 56677888998875321 1124567774
No 153
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=54.48 E-value=60 Score=23.68 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=49.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe---cCe--ecCCCCcccccCCCCC
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS---SGK--ILENNKTVGQCKIPYG 78 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI~---~Gk--~L~D~~tL~~~~i~~g 78 (118)
.+.+++.+.|| .+ .+.+++++|+.+|=+.|.+. +. +.+.-=|.| .|. .|+.++.|.+.++..+
T Consensus 1 ~i~~~V~l~d~-~~-~~~v~~~tt~~el~~~v~~~l~L~--------e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~ 70 (294)
T 1ef1_A 1 TISVRVTTMDA-EL-EFAIQPNTTGKQLFDQVVKTIGLR--------EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKE 70 (294)
T ss_dssp CEEEEEEETTE-EE-EEEECTTCBHHHHHHHHHHHHTCC--------CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCC
T ss_pred CEEEEEEECCc-eE-EEEECCCCcHHHHHHHHHHHcCCC--------CcceeEEEEECCCCceeecccccCHHhhccCCC
Confidence 37889999999 54 69999999999999999998 32 133334443 232 5677778877654433
Q ss_pred CCCCceEEEEEEEc
Q 033473 79 EVPGGVIIMHVVVQ 92 (118)
Q Consensus 79 ~~~~~~~t~hlv~~ 92 (118)
.+..+++-++
T Consensus 71 ----~~~~l~fr~k 80 (294)
T 1ef1_A 71 ----SPLLFKFRAK 80 (294)
T ss_dssp ----SSEEEEEEES
T ss_pred ----CCEEEEEEEE
Confidence 2356676655
No 154
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=54.34 E-value=39 Score=21.48 Aligned_cols=64 Identities=9% Similarity=0.083 Sum_probs=44.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEEcCCc
Q 033473 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSL 95 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~~~ 95 (118)
...++=...+..||..++.++. .+-+.=.+-..+.+|+++++|-+-+++-. +.+.+.+=+++..
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~-------i~L~~y~f~LQd~~L~~~k~LvdQcVqge----GlVQinvqik~~~ 69 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQ-------CSLDAHEICLQDIQLDPDRSLFDQGVKTD----GTVQLSVQVISYQ 69 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHC-------SCCSSCEEEETTEECCTTSBTTTSSCCCC----SEEEEEEEEECCT
T ss_pred hhhccccCcHHHHHHHHHHHhc-------CCcccCeEEeeccccCCCccHHHhhcccc----cEEEEEEEEEecC
Confidence 3456667788999999999953 22555566668888999999999888633 2455665555443
No 155
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=51.43 E-value=30 Score=26.20 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=30.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
..+.|+|-+.||+.. .+.|++++|+.+|=+.+..+
T Consensus 30 ~k~ivkv~~~D~ss~-~l~V~~~~TA~dv~~~L~~k 64 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSK-TMMVDERQTVRQVLDNLMDK 64 (281)
T ss_dssp CEEEEEEEETTSCEE-EEEEETTCBHHHHHHHHHHH
T ss_pred ccEEEEEEecCCCEE-EEEECCCCcHHHHHHHHHHh
Confidence 457899999999654 79999999999999888776
No 156
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=50.67 E-value=17 Score=32.74 Aligned_cols=78 Identities=10% Similarity=0.177 Sum_probs=50.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCceeEEEecCe-----ec-CCCCcccccCCC
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISSGK-----IL-ENNKTVGQCKIP 76 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~---~p~~~e~~p~~~~~qrLI~~Gk-----~L-~D~~tL~~~~i~ 76 (118)
.|.|.|.+.+|.- ..++++.++|+.++|+.++.+ .|-...- .++++-.+.|-.+ .+ ++.+.|-++.+-
T Consensus 42 ~i~vd~LLPnGi~-i~l~v~~~~tl~~iK~~lw~~a~~~pl~~~l--~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~~ 118 (1091)
T 3hhm_A 42 RILVECLLPNGMI-VTLECLREATLITIKHELFKEARKYPLHQLL--QDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 118 (1091)
T ss_dssp -EEEEEECTTSCE-EEEEEETTCBHHHHHHHHHHHGGGSTTGGGC--CCGGGCEEEEEBTTSCEEEECCTTSBTTTSCBS
T ss_pred ceEEEEEcCCCeE-EEEEecCCCcHHHHHHHHHHHHHhCcchhhc--CChhHeEEEEEccCceEeeeecCceeeEEeecc
Confidence 3999999999954 479999999999999999988 3311111 2355555555443 34 445667766654
Q ss_pred CCCCCCceEEEEEEEcC
Q 033473 77 YGEVPGGVIIMHVVVQP 93 (118)
Q Consensus 77 ~g~~~~~~~t~hlv~~~ 93 (118)
.. .+.|+.+.
T Consensus 119 ~~-------~l~lve~~ 128 (1091)
T 3hhm_A 119 QP-------FLKVIEPV 128 (1091)
T ss_dssp SS-------EEEEECCC
T ss_pred ce-------eEEEEecC
Confidence 32 36666444
No 157
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=50.66 E-value=30 Score=21.07 Aligned_cols=31 Identities=23% Similarity=0.075 Sum_probs=23.9
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 033473 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (118)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~ 41 (118)
+|.+.+++| + .++++..+|+.++=..|...+
T Consensus 7 ~i~v~tP~G-~--~~~lp~GaT~~D~A~~Ih~~l 37 (78)
T 3hvz_A 7 EVFVFTPKG-D--VISLPIGSTVIDFAYAIHSAV 37 (78)
T ss_dssp EEEEECTTS-C--EEEEETTCBHHHHHHHHCHHH
T ss_pred eEEEECCCC-C--EEEecCCCCHHHHHHHhhhhh
Confidence 456677899 3 479999999999988876553
No 158
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=49.35 E-value=28 Score=25.99 Aligned_cols=35 Identities=23% Similarity=0.111 Sum_probs=29.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
....|+|-+.||+.. .+.|++++|+.+|-+.+...
T Consensus 7 ~~~ivkv~~~d~ss~-~l~V~~~mta~ev~~~l~~k 41 (256)
T 3hk0_A 7 AKQDVKVFSEDGTSK-VVEILADMTARDLCQLLVYK 41 (256)
T ss_dssp -CEEEEEEETTSCEE-EEEECTTCBHHHHHHHHHCC
T ss_pred CceEEEEEecCCcEE-EEEECCCCCHHHHHHHHHHh
Confidence 445788889999554 79999999999999888876
No 159
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=49.06 E-value=42 Score=20.84 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=21.1
Q ss_pred CCeeeeEEeC--CcchHHHHHHHHHhhCCC
Q 033473 16 GSDIGPFRYS--SASTVDMLKQRIVSDWPK 43 (118)
Q Consensus 16 g~~~~~~~v~--~~~tV~~LK~~I~~~~p~ 43 (118)
|..-..++++ +..||++|.+.+.+++|.
T Consensus 18 g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~ 47 (99)
T 2qjl_A 18 KQRVHKIKMDKEDPVTVGDLIDHIVSTMIN 47 (99)
T ss_dssp TCCEEEEEECSCSCCBHHHHHHHHHHHTCS
T ss_pred CCcEEEEecCCCCCCcHHHHHHHHHHHCch
Confidence 4444456666 678999999999999873
No 160
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=46.50 E-value=28 Score=23.59 Aligned_cols=57 Identities=12% Similarity=0.239 Sum_probs=35.1
Q ss_pred eEEeCC----cchHHHHHHHHHhh--CCCCCccCCC-CCceeEEEecCeecCC-CCcccccCCCCCCC
Q 033473 21 PFRYSS----ASTVDMLKQRIVSD--WPKGKTIVPK-AVTEIKLISSGKILEN-NKTVGQCKIPYGEV 80 (118)
Q Consensus 21 ~~~v~~----~~tV~~LK~~I~~~--~p~~~e~~p~-~~~~qrLI~~Gk~L~D-~~tL~~~~i~~g~~ 80 (118)
.+.+++ ..|..+|-+.|..+ ++.+ +.. ..+.+||||-=-+=++ +++|++.|+..|.|
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~e---iSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsf 73 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQD---ISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSI 73 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSS---EEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCc---EEEEecCCCCeEeCCCccccccCcHHHcCcCCCcE
Confidence 456654 35777777777665 3311 110 1235788876544333 69999999999854
No 161
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=46.18 E-value=31 Score=21.52 Aligned_cols=47 Identities=6% Similarity=0.099 Sum_probs=32.8
Q ss_pred eEEeCCc-chHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 21 PFRYSSA-STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~-~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
+++++.. .||.+|.+.+. ++ +..+.+..+|+++..+. ..+..|.+||
T Consensus 29 ~~el~~~~~Tv~dLL~~L~--~~---------~~~vaVavNg~iV~~~~-~~~~~L~dGD 76 (87)
T 1tyg_B 29 DVKWKKDTGTIQDLLASYQ--LE---------NKIVIVERNKEIIGKER-YHEVELCDRD 76 (87)
T ss_dssp EECCSSSCCBHHHHHHHTT--CT---------TSCCEEEETTEEECGGG-TTTSBCCSSS
T ss_pred EEECCCCCCcHHHHHHHhC--CC---------CCCEEEEECCEECChhh-cCCcCCCCCC
Confidence 5688887 89999988763 33 56677888999885332 2234577885
No 162
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=44.25 E-value=35 Score=27.68 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=31.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~ 41 (118)
..+.+++.+.||... .+.+++.+|+.+|-+.|...+
T Consensus 215 ~~~~~~V~l~dg~~~-~~~v~~~tt~~el~~~v~~~l 250 (555)
T 3au4_A 215 QEMTSTVYCHGGGSC-KITINSHTTAGEVVEKLIRGL 250 (555)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTCBHHHHHHHHHHHT
T ss_pred CCcceEEEecCCCeE-EEEeCCCCcHHHHHHHHHHHc
Confidence 357889999999654 799999999999999999984
No 163
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=44.23 E-value=29 Score=19.80 Aligned_cols=50 Identities=10% Similarity=0.192 Sum_probs=33.5
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+|+ ++++ +..||.+|.+.+.. + .....+..+|+++..+. -.+..+.+||
T Consensus 4 vNg~---~~~~-~~~tv~~ll~~l~~--~---------~~~v~vavN~~~v~~~~-~~~~~L~dgD 53 (64)
T 2cu3_A 4 LNGE---PRPL-EGKTLKEVLEEMGV--E---------LKGVAVLLNEEAFLGLE-VPDRPLRDGD 53 (64)
T ss_dssp ETTE---EECC-TTCCHHHHHHHHTB--C---------GGGEEEEETTEEEEGGG-CCCCCCCTTC
T ss_pred ECCE---EEEc-CCCcHHHHHHHcCC--C---------CCcEEEEECCEECCccc-cCCcCCCCCC
Confidence 4662 4577 77899999888743 2 66777888999885331 1234577785
No 164
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=41.61 E-value=33 Score=22.87 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=42.5
Q ss_pred CCceEEEEEEeCCCC----eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCC
Q 033473 3 DEELIDIKFRLYDGS----DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 3 ~~~~i~l~~~~~~g~----~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (118)
+++-|.|+++.+..+ ++ ++.++.+.=+ +- ++|=-+||-|-|++.+|+..=++|.+..|
T Consensus 25 Ddefv~I~I~~p~ir~~a~~~-ei~vd~~~F~----------F~-------~~PYyLRL~lP~~vved~~~~A~YD~d~g 86 (115)
T 3eud_A 25 DEEFIFLKIFISNIRFSAVGL-EIIIQENMII----------FH-------LSPYYLRLRFPHELIDDERSTAQYDSKDE 86 (115)
T ss_dssp CSSEEEEEEECCSCCCCSSSC-EEEEETTEEE----------EE-------ETTEEEEEECSSCEECSTTCEEEEETTTT
T ss_pred CCCEEEEEEEcCceecccCcc-EEEEeCCEEE----------Ee-------cCCeEEEEecCcceecCCCcceEEeCCCc
Confidence 357788888887542 22 3444433210 11 23889999999999999887788988877
Q ss_pred CCCCceEEEEE
Q 033473 79 EVPGGVIIMHV 89 (118)
Q Consensus 79 ~~~~~~~t~hl 89 (118)
..++++
T Consensus 87 -----~~~v~l 92 (115)
T 3eud_A 87 -----CINVKV 92 (115)
T ss_dssp -----EEEEEE
T ss_pred -----EEEEEE
Confidence 245655
No 165
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=41.57 E-value=64 Score=20.27 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=28.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~p 42 (118)
.++.||.... | ++..+.++++.+-.+|.++|.+.++
T Consensus 5 ~~vkvK~~~~-g-di~~~~v~~~i~~~~L~~kv~~~~~ 40 (89)
T 1vd2_A 5 SQVRVKAYYR-G-DIMITHFEPSISFEGLCNEVRDMCS 40 (89)
T ss_dssp SCEEEEEESS-S-CEEEEEECTTCCHHHHHHHHHHHTT
T ss_pred CeEEEEEEeC-C-eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4466666555 4 5678999999999999999999965
No 166
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=41.57 E-value=39 Score=21.49 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=41.4
Q ss_pred ceEEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe-ec-CCCCccccc
Q 033473 5 ELIDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-IL-ENNKTVGQC 73 (118)
Q Consensus 5 ~~i~l~~~~~~g~---~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk-~L-~D~~tL~~~ 73 (118)
+.|.|+|+-.+.- +-..+.|+.+.||+++-..|..++. .+.+=| |-+. ++ .-+.++++.
T Consensus 12 ~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~---------l~alFl-yvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 12 QKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---------SDSLFV-YVNSAFSPNPDESVIDL 75 (96)
T ss_dssp CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT---------CSSCEE-EEEEEECCCTTSBHHHH
T ss_pred CeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcC---------CceEEE-EECCcccCChhhHHHHH
Confidence 4899999887441 1124789999999999999999965 334444 5555 66 446777763
No 167
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=40.21 E-value=57 Score=26.67 Aligned_cols=50 Identities=16% Similarity=0.043 Sum_probs=35.9
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE--EecCe---ecCCCCccccc
Q 033473 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGK---ILENNKTVGQC 73 (118)
Q Consensus 20 ~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrL--I~~Gk---~L~D~~tL~~~ 73 (118)
+.+-++.+.||.+|-+.+..++.- ...+...+|| ||+|| ++.++.+|++.
T Consensus 354 ~~l~vpK~gtV~Dll~~l~k~~~~----~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 354 ITLYPDKHGCVRDLLEECKKAVEL----GEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp EEECCBTTCBHHHHHHHHHTTCCC----CTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCC----CcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 356778899999999999987430 0013677888 69998 45777777654
No 168
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=38.33 E-value=59 Score=18.92 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=31.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.+++ ...||.+|.+.+..+ | ++.. ......+.-+|+...+. +..+.+||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~-~-~l~~---~l~~~~vavN~~~v~~~----~~~l~~gD 63 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEK-E-GLKE---WLGVCAIALNDHLIDNL----NTPLKDGD 63 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTC-T-TTTT---TTTTCEEEESSSEECCT----TCCCCTTC
T ss_pred EEee-CCCcHHHHHHHHHHC-c-CHHH---HhhccEEEECCEEcCCC----CcCCCCCC
Confidence 4677 667999999999875 3 1111 12556777788875432 34577774
No 169
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=37.57 E-value=66 Score=19.23 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=23.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhhC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSDW 41 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~-~~tV~~LK~~I~~~~ 41 (118)
....+++.+.+|+ ..++.. .+|+.++-+.|...+
T Consensus 8 ~~~~i~I~lpdG~---~~~~~~~~~T~~dia~~i~~~l 42 (88)
T 1wwt_A 8 DSKPIKVTLPDGK---QVDAESWKTTPYQIACGISQGL 42 (88)
T ss_dssp SCCEEEEECTTSC---EEEEETTTCCHHHHHHHSSTTT
T ss_pred CCCCEEEEECCCC---EEEcccCCCCHHHHHHHhhhcc
Confidence 4455777788984 246665 689999887775543
No 170
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=36.67 E-value=24 Score=22.64 Aligned_cols=58 Identities=14% Similarity=0.257 Sum_probs=35.9
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCcc-CCC-CCc----eeEEEecC-eecCC------CCcccccCCCCCC
Q 033473 20 GPFRYSSASTVDMLKQRIVSDWPKGKTI-VPK-AVT----EIKLISSG-KILEN------NKTVGQCKIPYGE 79 (118)
Q Consensus 20 ~~~~v~~~~tV~~LK~~I~~~~p~~~e~-~p~-~~~----~qrLI~~G-k~L~D------~~tL~~~~i~~g~ 79 (118)
..+++++++|..+|-+.+.+. | +... .|. ... .-.|...+ ..|+. +++|.+.|+.+|+
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~-p-~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ 77 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNS-A-SLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ 77 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHC-T-TCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTC
T ss_pred EEEEECCchhHHHHHHHHHhC-h-HhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCC
Confidence 368999999999999999985 1 1100 110 011 23443333 24543 5778999999883
No 171
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=36.08 E-value=68 Score=19.00 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=33.9
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccC--CCC---CceeEEEecCeecCCCCcccccCCCCCC
Q 033473 21 PFRYSSASTVDMLKQRIVSDWPKGKTIV--PKA---VTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~~p~~~e~~--p~~---~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.++++...||.+|.+.+..+.| ++... -.+ .....+..+|+......- .+..+++||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p-~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD 79 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYG-SEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDD 79 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSC-HHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTC
T ss_pred EEEcCCCCcHHHHHHHHHHHCc-chhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCC
Confidence 4677777899999999998864 11000 000 145678888887752211 134577774
No 172
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=35.04 E-value=34 Score=23.63 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=38.1
Q ss_pred CcchHHHHHHHHHhhCCCC----C--c---cCCC------CCceeEEEecCeec-CCCCcccccCCCCCCCCCceEEEEE
Q 033473 26 SASTVDMLKQRIVSDWPKG----K--T---IVPK------AVTEIKLISSGKIL-ENNKTVGQCKIPYGEVPGGVIIMHV 89 (118)
Q Consensus 26 ~~~tV~~LK~~I~~~~p~~----~--e---~~p~------~~~~qrLI~~Gk~L-~D~~tL~~~~i~~g~~~~~~~t~hl 89 (118)
.++|..+|=..|.+..|.. . . ..|. -..++=-++.|+-- +|++||.+++..-||+ |.+
T Consensus 62 ~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy------idv 135 (143)
T 4a6q_A 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY------LDI 135 (143)
T ss_dssp TTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE------EEE
T ss_pred CCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE------EEE
Confidence 6789999998888886531 0 0 0000 01122234555544 6789999999998965 555
Q ss_pred EEcCC
Q 033473 90 VVQPS 94 (118)
Q Consensus 90 v~~~~ 94 (118)
.+-|+
T Consensus 136 aI~pP 140 (143)
T 4a6q_A 136 AITPP 140 (143)
T ss_dssp EEECG
T ss_pred EEeCC
Confidence 54443
No 173
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=34.46 E-value=57 Score=27.46 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=31.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~ 41 (118)
..+.+++.+.||.. ..+++++.+|+.+|=+.|..++
T Consensus 262 ~~i~~~V~llDgt~-~~~~vds~Tt~~ell~~V~~~L 297 (655)
T 3pvl_A 262 KPIMLPVTFMDGTT-KTLLTDSATTARELCNALADKI 297 (655)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHHHT
T ss_pred CceEEEEEecCCce-EEEEEccCCcHHHHHHHHHHHc
Confidence 45788999999965 4799999999999999999994
No 174
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=33.98 E-value=60 Score=20.90 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=21.7
Q ss_pred eeeeEEeCCcchHHHHHHHHHhhC
Q 033473 18 DIGPFRYSSASTVDMLKQRIVSDW 41 (118)
Q Consensus 18 ~~~~~~v~~~~tV~~LK~~I~~~~ 41 (118)
++..+-++++.+-.+|..+|.+++
T Consensus 23 d~~~i~V~~~i~f~~L~~kI~~Kl 46 (98)
T 1q1o_A 23 EIFTLLVEKVWNFDDLIMAINSKI 46 (98)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHH
Confidence 677899999999999999999984
No 175
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=33.03 E-value=65 Score=23.11 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=28.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~ 40 (118)
.+.|++-..||. ...+.|++++|+.+|-+.+...
T Consensus 34 k~~v~v~~~d~~-~k~i~v~~~~ta~ev~~~L~~k 67 (291)
T 3tca_A 34 KLVVKVHMDDSS-TKSLMVDERQLARDVLDNLFEK 67 (291)
T ss_dssp EEEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHH
T ss_pred ceEEEEEcCCCc-eEEEEeCCCCcHHHHHHHHHHH
Confidence 466788888884 4579999999999999998887
No 176
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=31.95 E-value=36 Score=27.86 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=25.0
Q ss_pred eEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEE
Q 033473 21 PFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLI 58 (118)
Q Consensus 21 ~~~v~~~~tV~~LK~~I~~~--~p~~~e~~p~~~~~qrLI 58 (118)
.+.+-.++|+.+||+.|++. +| +++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~---------~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFP---------QDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSC---------GGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcC---------cccEEEE
Confidence 46777899999999999998 55 9999994
No 177
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=30.35 E-value=1.1e+02 Score=19.42 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=41.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHh--hCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCCC
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVS--DWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~--~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (118)
.|+|-+-+.+......+++++++||.++=+..-- .+| . .+.+...+-.+|+.... +..+.+||
T Consensus 14 ~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~p----e--Idl~~~~V~Vng~~v~~-----d~~L~dGD 78 (97)
T 2hj1_A 14 NIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFP----E--IDLSTNKIGIFSRPIKL-----TDVLKEGD 78 (97)
T ss_dssp EEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCT----T--CCTTTSEEEEEECSCCT-----TCBCCTTC
T ss_pred EEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCC----c--ccccccEEEEcCEECCC-----CccCCCCC
Confidence 4666666777556667899999999987666542 343 0 12445678788888863 34577885
No 178
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=28.63 E-value=89 Score=18.95 Aligned_cols=29 Identities=21% Similarity=0.079 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHH
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQ 35 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~ 35 (118)
.++|+|...+|.. ..+++++..|+.+.=+
T Consensus 4 ~~~v~~~~~~~~~-~~~~~~~g~tlL~a~~ 32 (98)
T 1jq4_A 4 VHTITAVTEDGES-LRFECRSDEDVITAAL 32 (98)
T ss_dssp EEEEEEEETTTEE-EEEEEESCCTHHHHHH
T ss_pred cEEEEEEecCCCc-EEEEeCCCChHHHHHH
Confidence 4677777766644 3789999999887543
No 179
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=28.01 E-value=52 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=24.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCC--cchHHHHHHH
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSS--ASTVDMLKQR 36 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~--~~tV~~LK~~ 36 (118)
..+.++|.+.||+.. .++|+. ++|+.+|-+.
T Consensus 4 ~~~~i~V~l~dg~~~-~~~i~~~~~tt~~el~e~ 36 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYR-SVELKHGNNTTVQQIMEG 36 (322)
T ss_dssp -CCEEEEECTTSCEE-EEECTTGGGCCHHHHHTT
T ss_pred CceEEEEEEECCcEE-EEEEcCCCCCcHHHHHHH
Confidence 356889999999654 799999 9999999544
No 180
>4eo0_A Attachment protein G3P; filamentuos phage, infection, pilus binding, gene-3-protein, receptor binding, N-pilus; 1.61A {Enterobacteria phage ike}
Probab=26.62 E-value=61 Score=21.04 Aligned_cols=24 Identities=17% Similarity=0.581 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCCCccCCCCCceeEEEecCeec
Q 033473 32 MLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64 (118)
Q Consensus 32 ~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L 64 (118)
++|--++--|| -++.||+|.|-..
T Consensus 58 qik~t~~g~wp---------~s~frlv~~~~c~ 81 (115)
T 4eo0_A 58 QIKLTLSGTWP---------NSQFRLVTGDTCV 81 (115)
T ss_dssp HHHHHHHHHCT---------TCCEEEEECSSCE
T ss_pred hcccceecccC---------CceEEEEeCCcee
Confidence 34444444599 8999999999866
No 181
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=26.41 E-value=1.2e+02 Score=19.63 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=30.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 033473 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~ 41 (118)
.+.|..++...+.+.+ .+.+..+.|+.+++..++++.
T Consensus 7 sD~i~~~Vy~~Dhsy~-tvr~~v~~sa~eIl~~va~kl 43 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYV-SVKAKVSSIAQEILKVVAEKI 43 (104)
T ss_dssp SSCCCEEEECSSSCEE-EECCCTTCBSHHHHHHHHHHH
T ss_pred CCceEEEEEeccCceE-EEEEeccchHHHHHHHHHHHh
Confidence 3567788888888544 688999999999999999983
No 182
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=24.52 E-value=1.3e+02 Score=18.74 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=40.5
Q ss_pred CceEEEEEEeCCCCee---eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeec-CCCCcccc
Q 033473 4 EELIDIKFRLYDGSDI---GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQ 72 (118)
Q Consensus 4 ~~~i~l~~~~~~g~~~---~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L-~D~~tL~~ 72 (118)
.+.|.|+|+-.+.-.. ..+.++.+.|++++-..|..++. .+.+=|.-+..++ .-+.++++
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~---------l~alFlyVNn~f~Ps~d~~~~~ 69 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLK---------MDHVYCYINNSFAPSPQQNIGE 69 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHT---------CSCCEEEETTTBCCCTTSBHHH
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhC---------CceEEEEECCccCCCcccHHHH
Confidence 4678888887554111 13789999999999999999965 4455554466655 33667765
No 183
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=24.45 E-value=48 Score=22.56 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=39.0
Q ss_pred CCceEEEEEEeCCCC----eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccccCCCCC
Q 033473 3 DEELIDIKFRLYDGS----DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (118)
Q Consensus 3 ~~~~i~l~~~~~~g~----~~~~~~v~~~~tV~~LK~~I~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (118)
+++.|.|++++...+ ++ .+.++.+. -. +- .++=.+||-+-|.+.+|+..=++|....|
T Consensus 11 d~e~viV~Ik~P~~~~~~sdi-ei~v~~~~--F~--------F~-------~~PYyLRL~LP~~V~e~~~~kA~YD~d~~ 72 (134)
T 2k8q_A 11 DEEFIFLKIFISNIRFSAVGL-EIIIQENM--II--------FH-------LSPYYLRLRFPHELIDDERSTAQYDSKDE 72 (134)
T ss_dssp CSSEEEEEEECCSSCCCSSSC-CCEECSSS--EE--------EC-------SSSSCEEECCSSCEECCSSCEEEEETTTT
T ss_pred CCCEEEEEEEcCccccCcccc-EEEEeCCE--EE--------Ee-------cCCeEEEecCCCeeecCCCcceeEeccCC
Confidence 467889999998774 21 23333221 11 11 23889999999999999877778887766
No 184
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=23.33 E-value=1.1e+02 Score=18.89 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=21.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHH
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDML 33 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~L 33 (118)
..+.|+|...+|.. ..+++.+..|+.+.
T Consensus 5 ~m~~V~~~~~~g~~-~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 5 DKITVHFINRDGET-LTTKGKIGDSLLDV 32 (108)
T ss_dssp CEEEEEEECTTSCE-EEEEEETTCBHHHH
T ss_pred ceEEEEEECCCCCE-EEEEECCCChHHHH
Confidence 45788888788854 36899999988764
No 185
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=22.76 E-value=1.7e+02 Score=19.37 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=30.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 033473 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (118)
Q Consensus 5 ~~i~l~~~~~~g~~~~~~~v~~~~tV~~LK~~I~~~~ 41 (118)
+.|..++...+.+.+ .+.+..+.|+.+++..++++.
T Consensus 8 Dei~~~VY~~Dhsy~-tvr~~v~~sa~eIl~~va~kl 43 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYV-TIRSRLSASVQDILGSVTEKL 43 (120)
T ss_dssp CCEEECEECTTSCCC-CEEECTTCCHHHHHHHHHHHS
T ss_pred CcEEEEEEeccCceE-EEEEeccccHHHHHHHHHHHh
Confidence 567788888888544 689999999999999999984
No 186
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=22.75 E-value=1.3e+02 Score=18.31 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHH
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLK 34 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~LK 34 (118)
.+.|+|...+|... .+++++..|+.+.=
T Consensus 3 ~~~v~~~~~~g~~~-~~~~~~g~tlL~a~ 30 (103)
T 2wlb_A 3 GIKVFFVTPEGREI-MIEGNEGDSILDLA 30 (103)
T ss_dssp CEEEEEECTTCCEE-EEEECTTCBHHHHH
T ss_pred ceEEEEEeCCCCEE-EEEECCCCHHHHHH
Confidence 56788876788444 68999999987753
No 187
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=21.32 E-value=1.4e+02 Score=19.10 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=27.6
Q ss_pred CCCCceEEEEEEe----CCCCeeeeEEeCC----cchHHHHHHHHHhhCCCC
Q 033473 1 MPDEELIDIKFRL----YDGSDIGPFRYSS----ASTVDMLKQRIVSDWPKG 44 (118)
Q Consensus 1 ~~~~~~i~l~~~~----~~g~~~~~~~v~~----~~tV~~LK~~I~~~~p~~ 44 (118)
|+....|.|+|.- .-|+. ..++++. ..||.+|=+.|.+++|+.
T Consensus 1 ~~~~m~v~V~f~g~l~~l~g~~-~~v~l~~~~g~~~TV~dLl~~L~~~~~~~ 51 (110)
T 2k9x_A 1 MSNHNHITVQFAGGCELLFAKQ-TSLQLDGVVPTGTNLNGLVQLLKTNYVKE 51 (110)
T ss_dssp CCCSSCCEEEEESSCGGGTTSC-SEECCCCSCGGGCCHHHHHHHHTTTTCCS
T ss_pred CCCccEEEEEEEecHHHHhCCe-EEEEeCCcCCCCccHHHHHHHHHHHcccc
Confidence 5554556666643 23432 3567773 359999999999987743
No 188
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=20.22 E-value=1.4e+02 Score=18.45 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHH
Q 033473 6 LIDIKFRLYDGSDIGPFRYSSASTVDML 33 (118)
Q Consensus 6 ~i~l~~~~~~g~~~~~~~v~~~~tV~~L 33 (118)
.+.|+|...+|.. ..+++.+..|+.+.
T Consensus 5 m~~v~~~~~~g~~-~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 5 VVNVVFVDRSGQR-IPVSGRVGDNVLHL 31 (109)
T ss_dssp EEEEEEECTTSCE-EEEEEETTCBHHHH
T ss_pred cEEEEEEcCCCCE-EEEEECCCCcHHHH
Confidence 4778887788854 36889999998774
Done!