BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033474
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P83877|TXN4A_MOUSE Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1
Length = 142
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 88/104 (84%), Positives = 99/104 (95%)
Query: 15 LEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 74
++MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGN
Sbjct: 39 MKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGN 98
Query: 75 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 118
NNKINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct: 99 NNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
>sp|P83876|TXN4A_HUMAN Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1
Length = 142
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 88/104 (84%), Positives = 99/104 (95%)
Query: 15 LEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 74
++MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGN
Sbjct: 39 MKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGN 98
Query: 75 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 118
NNKINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct: 99 NNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
>sp|P87215|DIMI_SCHPO Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dim1 PE=1 SV=1
Length = 142
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 77/104 (74%), Positives = 93/104 (89%)
Query: 15 LEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 74
++ DEVL +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGN
Sbjct: 39 IKQDEVLYRIAEKVVNMAVIYLVDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGN 98
Query: 75 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 118
NNKINW L+DKQE IDI+ET++RGARKG+GLVI+PKDYST++RY
Sbjct: 99 NNKINWPLEDKQEMIDIIETIFRGARKGKGLVISPKDYSTRHRY 142
>sp|Q553S5|TXN4A_DICDI Thioredoxin-like protein 4A homolog OS=Dictyostelium discoideum
GN=txnl4a PE=3 SV=4
Length = 160
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 92/104 (88%)
Query: 15 LEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 74
++ D++L+S+AE +KN AVIY+VDI+EVPD N+MYELYD MFF+RNKHIM+DLGTGN
Sbjct: 30 MKQDDILASIAEKVKNMAVIYVVDITEVPDLNSMYELYDDCPTMFFYRNKHIMVDLGTGN 89
Query: 75 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 118
NNKINWAL +KQ+ IDI+ETVY+GARKG+GLV +P+D+S +Y++
Sbjct: 90 NNKINWALTNKQDMIDIIETVYKGARKGKGLVNSPRDFSPQYKF 133
>sp|Q06819|DIB1_YEAST Spliceosomal protein DIB1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DIB1 PE=1 SV=1
Length = 143
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 83/99 (83%)
Query: 17 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN 76
MDE+LSS+AE ++NFAVIYL DI EV DF+ MYEL DP TVMFF+ NKH+M D GTGNNN
Sbjct: 42 MDELLSSIAERVRNFAVIYLCDIDEVSDFDEMYELTDPMTVMFFYHNKHMMCDFGTGNNN 101
Query: 77 KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 115
K+N+ + DKQE IDI+ET++RGARK +GLV++P DY+ K
Sbjct: 102 KLNFIVDDKQEMIDILETIFRGARKNKGLVVSPYDYNHK 140
>sp|Q75BD8|DIB1_ASHGO Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIB1 PE=3 SV=1
Length = 143
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 86/110 (78%), Gaps = 3/110 (2%)
Query: 6 DTPRRLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 65
D+ R +L MDE+L S+AE + NFA IY+ D +EVPDFN MYEL DP TVMFF++NKH
Sbjct: 34 DSDRSCML---MDEILYSIAEKVVNFAAIYVCDTTEVPDFNEMYELQDPMTVMFFYKNKH 90
Query: 66 IMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 115
+ D GTGNNNK+N+ + +KQE IDI+ETV+RGAR+ +GLV++P DY+ K
Sbjct: 91 MRCDFGTGNNNKMNFVVDNKQEMIDIIETVFRGARRNKGLVVSPYDYNYK 140
>sp|Q6FMI2|DIB1_CANGA Spliceosomal protein DIB1 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DIB1 PE=3
SV=1
Length = 142
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/99 (62%), Positives = 80/99 (80%)
Query: 17 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN 76
MDE+L+SVAE ++NF IYL DI EVPDFN MYEL D +MFF++NKH+M D GTGNNN
Sbjct: 40 MDEMLASVAEKVRNFVAIYLCDIDEVPDFNDMYELNDNMCLMFFYKNKHMMCDFGTGNNN 99
Query: 77 KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 115
K+N+ DKQE IDI+ET++RGARK +G+V++P DY+ K
Sbjct: 100 KMNFLPDDKQELIDIMETIFRGARKNKGIVVSPYDYNHK 138
>sp|Q9NX01|TXN4B_HUMAN Thioredoxin-like protein 4B OS=Homo sapiens GN=TXNL4B PE=1 SV=1
Length = 149
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 15 LEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTG 73
L++D++LS + + A IYLVD+ + + +++ Y PSTV FFF +H+ +D G+
Sbjct: 39 LQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSP 97
Query: 74 NNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 111
++ K + K KQ+FID++E +YRGA +G+ +V +P D
Sbjct: 98 DHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
>sp|Q8BUH1|TXN4B_MOUSE Thioredoxin-like protein 4B OS=Mus musculus GN=Txnl4b PE=2 SV=1
Length = 149
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 15 LEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTG 73
L++D++LS + + A IYL D+ P + +++ Y PSTV FFF +H+ D G+
Sbjct: 39 LQLDDILSKTSADLSKMAAIYLGDVDHTPVYTQYFDISYIPSTV-FFFNGQHMKGDYGSP 97
Query: 74 NNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 111
++ K + K KQ+FID++E +YRGA +G+ +V +P D
Sbjct: 98 DHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
>sp|Q73TS2|PCKG_MYCPA Phosphoenolpyruvate carboxykinase [GTP] OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=pckG
PE=3 SV=1
Length = 609
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 3 ATYDTPRRLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 62
A P R++ DE + +A + + ++ + P N+ L DPS V
Sbjct: 27 AELTQPDRVVFADGSDEEFNRLAAELVEAGTLKKLNEKKHP--NSYLALSDPSDVARVES 84
Query: 63 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAP 109
+I + +G NW D E I+ +YRG +GR + + P
Sbjct: 85 RTYICTEEESGAGPTNNWM--DPTEMRSIMTDLYRGCMRGRTMWVVP 129
>sp|Q9PR63|GYRA_UREPA DNA gyrase subunit A OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=gyrA PE=3 SV=1
Length = 840
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 21 LSSVAETIKNFAVIYLVDISEV------PDFNTMYELYDPSTVMFFF---------RNKH 65
L+ V + IK +A + V ISE+ PDF T E+Y S ++ +F R+K+
Sbjct: 204 LTEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIYGDSGIIKYFNTGRGSVTIRSKY 263
Query: 66 IMIDLGTG 73
+ D+G G
Sbjct: 264 EIEDIGQG 271
>sp|A2RT91|ANKAR_MOUSE Ankyrin and armadillo repeat-containing protein OS=Mus musculus
GN=Ankar PE=2 SV=1
Length = 1465
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 10 RLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYE-------LYDPST----VM 58
R I+++++D + F+ LVDI+ PDFN +Y+ Y+P++ +
Sbjct: 176 RTIMDIDLDGKPQTTKNVFSEFSSAGLVDITNDPDFNGIYDEDMNEDPTYEPNSPEEKAV 235
Query: 59 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 96
F + IM+ L T + +I + E I I ET Y
Sbjct: 236 FMKYAESIMMKL-TFSTVQIQ-----QHENIFIFETAY 267
>sp|Q7Z5J8|ANKAR_HUMAN Ankyrin and armadillo repeat-containing protein OS=Homo sapiens
GN=ANKAR PE=2 SV=3
Length = 1434
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 10 RLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYE-------LYDPS----TVM 58
R I++++ D + + F+ L DI++ PDFN +Y+ YDP+ T +
Sbjct: 176 RAIMDIDPDGKPQTNKDIFSEFSSAGLTDITKDPDFNEIYDEDVNEDPTYDPNSPEETAV 235
Query: 59 FFFRNKHIMIDL 70
F ++IM+ L
Sbjct: 236 FMKYAENIMLKL 247
>sp|Q1BFN7|PCKG_MYCSS Phosphoenolpyruvate carboxykinase [GTP] OS=Mycobacterium sp.
(strain MCS) GN=pckG PE=3 SV=1
Length = 609
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 3 ATYDTPRRLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 62
A P R++ +E + + E + ++ + P N+ L DPS V
Sbjct: 27 AELTQPDRVVFTDGSEEECARLTEQLCEAGTFQKLNEEKKP--NSYLALSDPSDVARVES 84
Query: 63 NKHIM----IDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAP 109
+I ID G NN W D E I+ +YRG+ +GR + + P
Sbjct: 85 RTYICSEREIDAGPTNN----WM--DPAEMRGIMTDLYRGSMRGRTMYVVP 129
>sp|A1U995|PCKG_MYCSK Phosphoenolpyruvate carboxykinase [GTP] OS=Mycobacterium sp.
(strain KMS) GN=pckG PE=3 SV=1
Length = 609
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 3 ATYDTPRRLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 62
A P R++ +E + + E + ++ + P N+ L DPS V
Sbjct: 27 AELTQPDRVVFTDGSEEECARLTEQLCEAGTFQKLNEEKKP--NSYLALSDPSDVARVES 84
Query: 63 NKHIM----IDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAP 109
+I ID G NN W D E I+ +YRG+ +GR + + P
Sbjct: 85 RTYICSEREIDAGPTNN----WM--DPAEMRGIMTDLYRGSMRGRTMYVVP 129
>sp|A3PSV1|PCKG_MYCSJ Phosphoenolpyruvate carboxykinase [GTP] OS=Mycobacterium sp.
(strain JLS) GN=pckG PE=3 SV=1
Length = 609
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 3 ATYDTPRRLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 62
A P R++ +E + + E + ++ + P N+ L DPS V
Sbjct: 27 AELTQPDRVVFTDGSEEECARLTEQLCEAGTFQKLNEEKKP--NSYLALSDPSDVARVES 84
Query: 63 NKHIM----IDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAP 109
+I ID G NN W D E I+ +YRG+ +GR + + P
Sbjct: 85 RTYICSEREIDAGPTNN----WM--DPAEMRGIMTDLYRGSMRGRTMYVVP 129
>sp|P02567|MYO1_CAEEL Myosin-1 OS=Caenorhabditis elegans GN=let-75 PE=2 SV=3
Length = 1938
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 71 GTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 115
GT N +NW K+K D V +V + ++K LV +DY+T+
Sbjct: 584 GTVRYNVLNWLEKNKDPLNDTVVSVMKASKKNDLLVEIWQDYTTQ 628
>sp|Q54DP7|MYBR_DICDI Myb-like protein R OS=Dictyostelium discoideum GN=mybR PE=4 SV=2
Length = 394
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 42 VPDFNTMYELYDPSTVMF----FFRNKHIMIDLGT-GNNNKINWALKDKQEFIDIVETVY 96
V +F + E+ PS V+ K +M+++ T GN ++INW KQ F+ + +
Sbjct: 307 VKNFKSTQEIIKPSPVISGNWSLDEQKALMVEVSTLGNKSEINWFFISKQLFL---KGIS 363
Query: 97 RGARKGR 103
R AR+ +
Sbjct: 364 RNARECQ 370
>sp|Q5UQ35|YR811_MIMIV Putative ariadne-like RING finger protein R811 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R811 PE=4 SV=1
Length = 990
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 4 TYDTPRRLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYD 53
TYD PR+ +L +M VL ++ +T + V+ IS+ +N YE+ D
Sbjct: 314 TYDDPRKEVLKEQMSVVLENLKKTNREDHVVVTEWISD--SYNQTYEVND 361
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,136,319
Number of Sequences: 539616
Number of extensions: 1784992
Number of successful extensions: 3984
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3970
Number of HSP's gapped (non-prelim): 25
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)