Query 033474
Match_columns 118
No_of_seqs 108 out of 133
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 02:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02966 DIM1: Mitosis protein 100.0 5.3E-66 1.2E-70 386.5 10.0 100 13-112 34-133 (133)
2 KOG3414 Component of the U4/U6 100.0 8.8E-66 1.9E-70 388.3 10.7 106 13-118 37-142 (142)
3 PLN00410 U5 snRNP protein, DIM 100.0 1.8E-43 3.8E-48 263.9 10.4 106 13-118 37-142 (142)
4 cd02986 DLP Dim1 family, Dim1- 100.0 6.3E-42 1.4E-46 249.5 9.5 86 13-99 28-114 (114)
5 cd02954 DIM1 Dim1 family; Dim1 99.9 1.2E-21 2.7E-26 141.8 9.6 87 13-99 28-114 (114)
6 cd02984 TRX_PICOT TRX domain, 97.3 0.0011 2.3E-08 43.0 6.1 54 11-64 26-79 (97)
7 PF00085 Thioredoxin: Thioredo 97.1 0.0053 1.1E-07 39.3 7.7 74 10-93 28-101 (103)
8 cd02965 HyaE HyaE family; HyaE 96.5 0.005 1.1E-07 44.8 4.6 59 6-64 36-94 (111)
9 cd02975 PfPDO_like_N Pyrococcu 96.0 0.054 1.2E-06 37.7 7.5 76 11-97 34-111 (113)
10 cd02989 Phd_like_TxnDC9 Phosdu 96.0 0.016 3.4E-07 40.5 4.8 55 11-66 34-88 (113)
11 cd02947 TRX_family TRX family; 96.0 0.049 1.1E-06 33.0 6.4 54 10-64 21-74 (93)
12 PRK10996 thioredoxin 2; Provis 95.8 0.088 1.9E-06 37.9 8.1 75 11-95 64-138 (139)
13 TIGR01126 pdi_dom protein disu 95.5 0.031 6.8E-07 35.8 4.4 54 11-64 25-80 (102)
14 TIGR01068 thioredoxin thioredo 95.4 0.16 3.5E-06 32.1 7.4 74 10-93 25-98 (101)
15 cd03001 PDI_a_P5 PDIa family, 95.4 0.066 1.4E-06 34.7 5.6 60 11-70 30-89 (103)
16 cd02982 PDI_b'_family Protein 95.3 0.029 6.2E-07 36.6 3.8 50 13-62 26-77 (103)
17 cd03004 PDI_a_ERdj5_C PDIa fam 95.3 0.065 1.4E-06 35.3 5.5 53 11-63 31-83 (104)
18 PRK11509 hydrogenase-1 operon 95.0 0.12 2.7E-06 38.6 7.0 80 7-96 44-124 (132)
19 cd03002 PDI_a_MPD1_like PDI fa 95.0 0.058 1.3E-06 35.5 4.5 54 11-64 30-85 (109)
20 cd02956 ybbN ybbN protein fami 94.9 0.21 4.6E-06 32.3 7.0 52 10-61 23-74 (96)
21 cd02949 TRX_NTR TRX domain, no 94.6 0.16 3.5E-06 33.5 6.0 72 11-92 25-96 (97)
22 cd02957 Phd_like Phosducin (Ph 94.5 0.12 2.5E-06 35.4 5.2 54 12-67 37-90 (113)
23 cd03065 PDI_b_Calsequestrin_N 94.5 0.15 3.2E-06 37.0 5.9 72 13-95 43-118 (120)
24 cd02996 PDI_a_ERp44 PDIa famil 94.4 0.17 3.7E-06 33.9 5.7 64 11-75 30-99 (108)
25 cd03003 PDI_a_ERdj5_N PDIa fam 94.3 0.15 3.3E-06 33.6 5.3 50 12-61 31-80 (101)
26 cd02961 PDI_a_family Protein D 94.3 0.21 4.6E-06 31.0 5.7 53 11-64 27-81 (101)
27 cd02963 TRX_DnaJ TRX domain, D 94.2 0.14 3.1E-06 35.1 5.2 63 11-75 36-99 (111)
28 cd02962 TMX2 TMX2 family; comp 94.2 0.26 5.6E-06 37.0 7.0 57 11-67 59-122 (152)
29 cd02995 PDI_a_PDI_a'_C PDIa fa 93.4 0.36 7.9E-06 31.0 5.7 62 11-73 30-93 (104)
30 cd02951 SoxW SoxW family; SoxW 93.4 0.64 1.4E-05 31.8 7.2 83 11-102 26-125 (125)
31 TIGR02187 GlrX_arch Glutaredox 93.1 0.77 1.7E-05 35.0 8.0 77 12-97 35-112 (215)
32 PRK09381 trxA thioredoxin; Pro 93.1 1.3 2.9E-05 29.4 8.3 57 11-68 33-89 (109)
33 PTZ00443 Thioredoxin domain-co 92.9 0.82 1.8E-05 36.5 8.2 80 11-100 64-143 (224)
34 cd03005 PDI_a_ERp46 PDIa famil 92.9 0.53 1.1E-05 30.3 5.9 52 11-63 28-82 (102)
35 cd02985 TRX_CDSP32 TRX family, 92.6 0.32 6.9E-06 32.8 4.8 60 11-73 27-89 (103)
36 KOG0910 Thioredoxin-like prote 92.6 0.33 7.2E-06 37.6 5.4 74 11-94 73-146 (150)
37 cd02994 PDI_a_TMX PDIa family, 92.5 0.89 1.9E-05 29.7 6.7 50 11-60 28-78 (101)
38 TIGR01295 PedC_BrcD bacterioci 92.5 0.57 1.2E-05 33.4 6.2 71 11-92 35-120 (122)
39 cd02999 PDI_a_ERp44_like PDIa 91.3 0.43 9.4E-06 32.4 4.3 51 12-64 31-82 (100)
40 cd03000 PDI_a_TMX3 PDIa family 91.1 1.8 3.8E-05 28.8 7.0 53 11-64 27-82 (104)
41 PTZ00051 thioredoxin; Provisio 90.8 1.1 2.5E-05 28.8 5.8 49 11-60 30-78 (98)
42 cd02993 PDI_a_APS_reductase PD 90.3 1.4 2.9E-05 29.9 6.0 51 11-61 33-86 (109)
43 cd03006 PDI_a_EFP1_N PDIa fami 90.3 1.2 2.6E-05 31.6 6.0 54 12-66 42-96 (113)
44 PHA02278 thioredoxin-like prot 89.9 0.76 1.6E-05 32.1 4.6 61 11-73 26-90 (103)
45 cd02998 PDI_a_ERp38 PDIa famil 89.6 1.5 3.1E-05 28.1 5.5 53 11-63 30-85 (105)
46 cd02987 Phd_like_Phd Phosducin 89.3 1.2 2.6E-05 33.7 5.6 54 11-66 95-148 (175)
47 cd02948 TRX_NDPK TRX domain, T 89.2 1.2 2.7E-05 29.8 5.1 52 11-64 29-81 (102)
48 cd02997 PDI_a_PDIR PDIa family 89.2 1.9 4.1E-05 27.7 5.8 54 11-65 29-86 (104)
49 COG0526 TrxA Thiol-disulfide i 89.0 1.5 3.3E-05 26.3 4.9 55 11-65 44-101 (127)
50 cd02953 DsbDgamma DsbD gamma f 88.9 1.4 3.1E-05 29.0 5.2 50 11-60 23-79 (104)
51 cd02955 SSP411 TRX domain, SSP 88.4 3.2 6.8E-05 30.1 7.1 80 11-95 27-118 (124)
52 cd02950 TxlA TRX-like protein 88.3 4.7 0.0001 29.2 7.9 80 11-99 32-113 (142)
53 cd02973 TRX_GRX_like Thioredox 86.8 2 4.4E-05 26.2 4.6 53 11-66 11-63 (67)
54 TIGR00424 APS_reduc 5'-adenyly 85.1 2.6 5.7E-05 37.3 6.1 60 11-70 383-445 (463)
55 KOG0907 Thioredoxin [Posttrans 84.8 4.5 9.8E-05 28.7 6.2 51 13-65 35-85 (106)
56 cd02952 TRP14_like Human TRX-r 83.7 2.5 5.4E-05 30.7 4.5 50 11-60 40-97 (119)
57 PLN02309 5'-adenylylsulfate re 80.9 4.9 0.00011 35.5 6.1 50 12-61 378-430 (457)
58 TIGR01130 ER_PDI_fam protein d 80.7 5.4 0.00012 32.2 5.8 55 11-65 30-87 (462)
59 TIGR02187 GlrX_arch Glutaredox 80.3 8 0.00017 29.5 6.4 68 13-94 147-214 (215)
60 PTZ00062 glutaredoxin; Provisi 80.0 5.2 0.00011 31.6 5.5 52 13-75 31-82 (204)
61 cd02992 PDI_a_QSOX PDIa family 80.0 4.4 9.5E-05 28.1 4.5 53 11-63 31-88 (114)
62 TIGR00411 redox_disulf_1 small 79.9 5.3 0.00011 24.7 4.5 70 11-94 11-80 (82)
63 cd02988 Phd_like_VIAF Phosduci 73.1 8.7 0.00019 29.7 4.9 50 11-64 114-163 (192)
64 cd02959 ERp19 Endoplasmic reti 71.7 9.1 0.0002 26.9 4.4 50 11-60 31-83 (117)
65 cd07034 TPP_PYR_PFOR_IOR-alpha 71.3 5.9 0.00013 28.3 3.4 31 76-106 124-154 (160)
66 PRK00293 dipZ thiol:disulfide 70.8 14 0.0003 33.0 6.2 76 11-95 486-569 (571)
67 COG1274 PckA Phosphoenolpyruva 69.0 4.1 8.8E-05 37.7 2.6 38 68-111 95-132 (608)
68 PF11399 DUF3192: Protein of u 60.9 6.4 0.00014 28.9 1.9 32 42-73 46-77 (102)
69 PTZ00102 disulphide isomerase; 59.2 35 0.00075 28.2 6.1 56 11-66 61-119 (477)
70 PRK04210 phosphoenolpyruvate c 59.0 9.6 0.00021 35.4 3.1 38 68-111 88-125 (601)
71 PTZ00102 disulphide isomerase; 58.3 39 0.00085 27.9 6.3 77 11-96 387-465 (477)
72 TIGR01130 ER_PDI_fam protein d 55.5 79 0.0017 25.6 7.5 47 12-60 377-426 (462)
73 cd05796 Ribosomal_P0_like Ribo 55.4 24 0.00052 26.5 4.2 79 19-99 5-103 (163)
74 cd05795 Ribosomal_P0_L10e Ribo 55.2 21 0.00046 27.1 4.0 79 19-99 5-102 (175)
75 PF13192 Thioredoxin_3: Thiore 51.8 62 0.0013 20.7 5.7 67 11-93 10-76 (76)
76 KOG0911 Glutaredoxin-related p 51.3 13 0.00028 30.7 2.4 52 11-64 29-81 (227)
77 cd00819 PEPCK_GTP Phosphoenolp 49.5 16 0.00036 33.8 3.0 37 69-111 75-111 (579)
78 PF14479 HeLo: Prion-inhibitio 49.2 14 0.0003 27.7 2.1 24 72-95 146-169 (212)
79 KOG0191 Thioredoxin/protein di 39.6 49 0.0011 27.4 4.1 51 13-63 61-111 (383)
80 cd07038 TPP_PYR_PDC_IPDC_like 39.4 39 0.00084 24.9 3.2 31 76-106 126-156 (162)
81 PF01042 Ribonuc_L-PSP: Endori 39.4 14 0.0003 25.7 0.7 37 15-51 50-88 (121)
82 TIGR02740 TraF-like TraF-like 38.3 2E+02 0.0044 23.3 7.4 28 12-41 179-206 (271)
83 TIGR03610 RutC pyrimidine util 38.3 11 0.00023 27.2 0.0 37 14-50 56-94 (127)
84 PHA02152 hypothetical protein 38.1 24 0.00053 25.7 1.9 46 52-101 2-47 (96)
85 cd06155 eu_AANH_C_1 A group of 38.0 10 0.00023 25.8 -0.0 38 14-51 32-71 (101)
86 PF05972 APC_15aa: APC 15 resi 36.5 13 0.00029 19.4 0.2 10 108-117 4-13 (16)
87 TIGR03143 AhpF_homolog putativ 36.0 2.6E+02 0.0056 24.6 8.1 83 13-105 380-463 (555)
88 PF06713 bPH_4: Bacterial PH d 35.7 73 0.0016 20.9 3.8 31 62-94 42-72 (74)
89 cd07035 TPP_PYR_POX_like Pyrim 35.5 56 0.0012 23.0 3.4 30 76-105 118-148 (155)
90 cd03026 AhpF_NTD_C TRX-GRX-lik 34.9 61 0.0013 21.8 3.3 50 12-64 25-74 (89)
91 cd02958 UAS UAS family; UAS is 34.7 1.4E+02 0.0031 20.0 5.7 75 12-95 30-110 (114)
92 COG0028 IlvB Thiamine pyrophos 34.4 48 0.001 29.7 3.5 39 75-113 122-163 (550)
93 KOG4122 Mitochondrial/chloropl 32.3 44 0.00094 20.9 2.1 27 91-117 10-36 (38)
94 KOG2013 SMT3/SUMO-activating c 31.7 37 0.0008 31.7 2.3 39 19-67 26-64 (603)
95 KOG3048 Molecular chaperone Pr 31.7 24 0.00052 27.8 1.0 21 51-74 73-93 (153)
96 COG0251 TdcF Putative translat 30.8 19 0.00041 26.1 0.3 36 16-51 59-96 (130)
97 PF01320 Colicin_Pyocin: Colic 30.5 38 0.00083 23.9 1.8 17 83-99 10-26 (85)
98 PTZ00135 60S acidic ribosomal 29.3 89 0.0019 26.3 4.1 92 18-111 11-120 (310)
99 PF00821 PEPCK: Phosphoenolpyr 29.2 27 0.00059 32.4 1.1 36 69-110 75-110 (586)
100 cd02983 P5_C P5 family, C-term 29.1 2.2E+02 0.0048 20.4 7.0 42 16-57 41-85 (130)
101 cd00448 YjgF_YER057c_UK114_fam 28.5 25 0.00055 22.9 0.6 38 14-51 38-77 (107)
102 PHA02125 thioredoxin-like prot 27.4 1E+02 0.0022 19.5 3.3 42 11-58 10-51 (75)
103 PF08923 MAPKK1_Int: Mitogen-a 27.1 99 0.0021 22.6 3.5 32 15-46 1-32 (119)
104 PF07978 NIPSNAP: NIPSNAP ; I 26.9 1.6E+02 0.0036 19.0 4.3 60 33-97 4-70 (102)
105 TIGR00004 endoribonuclease L-P 25.1 32 0.0007 23.9 0.7 36 15-50 55-92 (124)
106 cd06150 YjgF_YER057c_UK114_lik 24.9 19 0.00041 24.6 -0.5 34 17-50 38-73 (105)
107 cd06153 YjgF_YER057c_UK114_lik 24.8 24 0.00053 25.0 -0.0 36 16-51 44-86 (114)
108 TIGR00412 redox_disulf_2 small 24.4 2E+02 0.0043 18.4 6.3 51 11-66 10-60 (76)
109 PRK11401 putative endoribonucl 23.8 29 0.00063 24.7 0.2 37 14-50 54-92 (129)
110 PF13492 GAF_3: GAF domain; PD 23.3 1E+02 0.0022 19.6 2.7 23 17-39 2-29 (129)
111 cd06156 eu_AANH_C_2 A group of 22.7 38 0.00083 24.0 0.7 36 14-51 39-76 (118)
112 PRK00831 rpmJ 50S ribosomal pr 22.6 61 0.0013 20.4 1.5 18 100-117 22-39 (41)
113 cd06152 YjgF_YER057c_UK114_lik 22.2 37 0.0008 24.0 0.5 36 16-51 42-83 (114)
114 TIGR01866 cas_Csn2 CRISPR-asso 21.9 1.2E+02 0.0025 24.5 3.4 34 78-111 18-51 (216)
115 COG3118 Thioredoxin domain-con 21.4 2.2E+02 0.0048 24.6 5.0 57 10-66 54-110 (304)
116 PF13899 Thioredoxin_7: Thiore 21.4 1.5E+02 0.0032 18.9 3.2 35 10-44 28-65 (82)
117 COG2351 Transthyretin-like pro 21.3 17 0.00037 27.7 -1.4 50 68-117 70-123 (124)
118 PF08800 VirE_N: VirE N-termin 21.0 1.5E+02 0.0033 21.6 3.6 52 25-84 24-79 (136)
No 1
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=100.00 E-value=5.3e-66 Score=386.53 Aligned_cols=100 Identities=76% Similarity=1.336 Sum_probs=93.4
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHHHH
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 92 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDIi 92 (118)
+||+|||+|+++|++|||||+||+||++|||+||+||||+||||+||||||||||||+||||||||||+++|||||||||
T Consensus 34 ~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDii 113 (133)
T PF02966_consen 34 VCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDII 113 (133)
T ss_dssp HHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCCCeEEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCceeEEccCCc
Q 033474 93 ETVYRGARKGRGLVIAPKDY 112 (118)
Q Consensus 93 E~iyRgA~kGkglV~SP~dy 112 (118)
|+|||||+||||||+||+||
T Consensus 114 e~iyrga~kGk~iv~sP~dy 133 (133)
T PF02966_consen 114 ETIYRGARKGKGIVVSPKDY 133 (133)
T ss_dssp HHHHHHHHTT-SEEE-SS-G
T ss_pred HHHHHHhhcCCeeEeCCCCC
Confidence 99999999999999999998
No 2
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.8e-66 Score=388.29 Aligned_cols=106 Identities=75% Similarity=1.233 Sum_probs=105.1
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHHHH
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 92 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDIi 92 (118)
+||+|||+|+++|++|||||+|||||++|||+|++||||+||+|+||||||||||||+||||||||||++++||||||||
T Consensus 37 ~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idii 116 (142)
T KOG3414|consen 37 TCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDII 116 (142)
T ss_pred hHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCceeEEccCCcccccCC
Q 033474 93 ETVYRGARKGRGLVIAPKDYSTKYRY 118 (118)
Q Consensus 93 E~iyRgA~kGkglV~SP~dys~~~~~ 118 (118)
|+|||||+||||||+||+||+++|+|
T Consensus 117 e~iyRga~KGKgiV~sP~dy~~~y~~ 142 (142)
T KOG3414|consen 117 ETIYRGARKGKGIVQSPKDYSTLYRY 142 (142)
T ss_pred HHHHHhhhcCCeEEECCcchHhhccC
Confidence 99999999999999999999999986
No 3
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=100.00 E-value=1.8e-43 Score=263.95 Aligned_cols=106 Identities=92% Similarity=1.420 Sum_probs=104.3
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHHHH
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 92 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDIi 92 (118)
.|+.||++|.++|++++++|.||.||++++|+++++|++.+|+|+||||||.||+||.||||||||||++.+||||+|++
T Consensus 37 pCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i 116 (142)
T PLN00410 37 TCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
T ss_pred hHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCceeEEccCCcccccCC
Q 033474 93 ETVYRGARKGRGLVIAPKDYSTKYRY 118 (118)
Q Consensus 93 E~iyRgA~kGkglV~SP~dys~~~~~ 118 (118)
|++||||+||||||+||+||||++||
T Consensus 117 ~~~~~~a~~g~~~~~~~~~~~~~~~~ 142 (142)
T PLN00410 117 ETVYRGARKGRGLVISPKDYSTKYRY 142 (142)
T ss_pred HHHHHHHhcCCeEEECCCcccccccC
Confidence 99999999999999999999999986
No 4
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=100.00 E-value=6.3e-42 Score=249.46 Aligned_cols=86 Identities=38% Similarity=0.803 Sum_probs=84.0
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCccccccccccc-CcceEEEEeecceeEEecCCCCCceEEeecCChhhHHHH
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY-DPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI 91 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~-dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDI 91 (118)
.|++||++|+++|++++++|+||.||++|+|+++++|++. +|+++ ||+||||||||+||||||||||++++|||||||
T Consensus 28 pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfv-ffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi 106 (114)
T cd02986 28 VCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTI-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDL 106 (114)
T ss_pred hHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEE-EEECCcEEEEecCCCCCcEEEEEcCchhHHHHH
Confidence 4999999999999999999999999999999999999997 89997 999999999999999999999999999999999
Q ss_pred HHHHhhcc
Q 033474 92 VETVYRGA 99 (118)
Q Consensus 92 iE~iyRgA 99 (118)
||+|||||
T Consensus 107 ~e~~yr~a 114 (114)
T cd02986 107 IEVIYRGA 114 (114)
T ss_pred HHHHHcCC
Confidence 99999997
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.86 E-value=1.2e-21 Score=141.82 Aligned_cols=87 Identities=77% Similarity=1.298 Sum_probs=84.3
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHHHH
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 92 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDIi 92 (118)
-|.+|+.+|.++|++.++.+.++.||+++.|+..+.|++..-+|++||-+++++..+.|+|||+||+|+++|||+|||||
T Consensus 28 pCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~ 107 (114)
T cd02954 28 VCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNNNKINWVFEDKQEFIDII 107 (114)
T ss_pred hHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCCceEEEecCcHHHHHHHH
Confidence 49999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 033474 93 ETVYRGA 99 (118)
Q Consensus 93 E~iyRgA 99 (118)
|.+||||
T Consensus 108 ~~~~~~~ 114 (114)
T cd02954 108 ETIYRGA 114 (114)
T ss_pred HHHhcCC
Confidence 9999986
No 6
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.31 E-value=0.0011 Score=43.04 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=46.3
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecc
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnk 64 (118)
+-.|.+|++.|.+++++..+-..++-+|.++.|+..+.|.+...+|++||-+++
T Consensus 26 C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 26 AEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 457999999999999987666778899999999999999998888887776554
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.09 E-value=0.0053 Score=39.34 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=56.9
Q ss_pred hHHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHH
Q 033474 10 RLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI 89 (118)
Q Consensus 10 ~~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefI 89 (118)
..-.|..+-..|.+++++.++=..++.||.++-+++.+-|++...+|++||-+++... .+++. .++++++
T Consensus 28 ~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~---------~~~g~-~~~~~l~ 97 (103)
T PF00085_consen 28 WCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVK---------RYNGP-RNAESLI 97 (103)
T ss_dssp TSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEE---------EEESS-SSHHHHH
T ss_pred CCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEE---------EEECC-CCHHHHH
Confidence 4668999999999999999966678999999999999999999988877665455443 33333 3556666
Q ss_pred HHHH
Q 033474 90 DIVE 93 (118)
Q Consensus 90 DIiE 93 (118)
+.|+
T Consensus 98 ~~i~ 101 (103)
T PF00085_consen 98 EFIE 101 (103)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 8
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.50 E-value=0.005 Score=44.78 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=51.8
Q ss_pred cCchhHHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecc
Q 033474 6 DTPRRLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 6 ~~~~~~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnk 64 (118)
-+|.+.-.|..|.-+|.++|++..+-..++.||+++-|...+-|.+..-+|+|||-+++
T Consensus 36 ~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 36 GDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred CCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCE
Confidence 34557889999999999999999888899999999999999999998877988886665
No 9
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.01 E-value=0.054 Score=37.73 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=56.8
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCc--eEEeecCChhhH
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN--KINWALKDKQEF 88 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnn--Kin~~~~~kQef 88 (118)
+--|..|-.+|.+++++- .-..++.+|+++.|+..+-|.+.-=+|+++| ++ .|... ++.+ ..++.||
T Consensus 34 C~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~-~~--------g~~~~~~~~~G-~~~~~el 102 (113)
T cd02975 34 CQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFL-QD--------GGKDGGIRYYG-LPAGYEF 102 (113)
T ss_pred CCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEE-eC--------CeecceEEEEe-cCchHHH
Confidence 346999999999999875 4467899999999999999998665575444 31 12223 3444 6777999
Q ss_pred HHHHHHHhh
Q 033474 89 IDIVETVYR 97 (118)
Q Consensus 89 IDIiE~iyR 97 (118)
.++|+.|+.
T Consensus 103 ~~~i~~i~~ 111 (113)
T cd02975 103 ASLIEDIVR 111 (113)
T ss_pred HHHHHHHHh
Confidence 999999985
No 10
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.99 E-value=0.016 Score=40.52 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=46.8
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeeccee
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 66 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm 66 (118)
.-.|..|+.+|..++++..+ ..+|-||+++.|+..+-|.+..=+|++||.+++=+
T Consensus 34 c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 34 FFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred CccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEE
Confidence 34799999999999998777 57899999999999998998776788888887633
No 11
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.97 E-value=0.049 Score=33.04 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=43.8
Q ss_pred hHHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecc
Q 033474 10 RLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 10 ~~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnk 64 (118)
.+-.|.++.+.|.+++.+ .+-..++.+|.++.+++.+-|.+..-+|+.+|-+++
T Consensus 21 ~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 21 WCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence 356799999999999998 666778999999999999999997766655555555
No 12
>PRK10996 thioredoxin 2; Provisional
Probab=95.80 E-value=0.088 Score=37.87 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=55.5
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHH
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFID 90 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefID 90 (118)
.-.|.+|..+|.+++++.+.-..++.+|+++.|++.+-|.+...+|++|| ++..+ ++--.| . .++++|.+
T Consensus 64 C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~-~~G~~-v~~~~G-------~-~~~e~l~~ 133 (139)
T PRK10996 64 CGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF-KNGQV-VDMLNG-------A-VPKAPFDS 133 (139)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE-ECCEE-EEEEcC-------C-CCHHHHHH
Confidence 45799999999999998876677888999999999999999887776554 55443 333223 2 35677777
Q ss_pred HHHHH
Q 033474 91 IVETV 95 (118)
Q Consensus 91 IiE~i 95 (118)
.++.+
T Consensus 134 ~l~~~ 138 (139)
T PRK10996 134 WLNEA 138 (139)
T ss_pred HHHHh
Confidence 77654
No 13
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=95.49 E-value=0.031 Score=35.77 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=44.3
Q ss_pred HHHHHhhHHHHHHhHHhhcc--ceEEEEEeCCCcccccccccccCcceEEEEeecc
Q 033474 11 LILNLEMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~n--fA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnk 64 (118)
.-.|.++...|.++|+..+. -..++.+|.++-+++.+-|.+...++++||-.|+
T Consensus 25 C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 25 CGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 45699999999999998876 5678899999999999999998877865555443
No 14
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.40 E-value=0.16 Score=32.14 Aligned_cols=74 Identities=16% Similarity=0.270 Sum_probs=52.8
Q ss_pred hHHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHH
Q 033474 10 RLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFI 89 (118)
Q Consensus 10 ~~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefI 89 (118)
..-.|.++.+.|.+++++..+-..++.+|.++-+.+.+-|++..-+|++|| ++... +.-..|. .+.+++.
T Consensus 25 ~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~-~~g~~-~~~~~g~--------~~~~~l~ 94 (101)
T TIGR01068 25 WCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLF-KNGKE-VDRSVGA--------LPKAALK 94 (101)
T ss_pred CCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEE-eCCcE-eeeecCC--------CCHHHHH
Confidence 345799999999999988876788899999999998888888776665455 54322 2233332 2556776
Q ss_pred HHHH
Q 033474 90 DIVE 93 (118)
Q Consensus 90 DIiE 93 (118)
+.++
T Consensus 95 ~~l~ 98 (101)
T TIGR01068 95 QLIN 98 (101)
T ss_pred HHHH
Confidence 6665
No 15
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=95.35 E-value=0.066 Score=34.67 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=48.5
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEec
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDL 70 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~ 70 (118)
.-.|.++-..+.+++++.+.-..++.+|.++-++..+-|.+...+|+++|-.+++...++
T Consensus 30 C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~ 89 (103)
T cd03001 30 CGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDY 89 (103)
T ss_pred CHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcceeec
Confidence 457999999999999998877888999999999999999998888876665454544444
No 16
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.33 E-value=0.029 Score=36.63 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=43.5
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCccccccccccc--CcceEEEEee
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY--DPSTVMFFFR 62 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~--dP~tvMFFfr 62 (118)
.|-.+-+.|.++|++.+.-..++.||.++-|++-+.|.+. ..+++++|-.
T Consensus 26 ~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 26 ESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred hHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEec
Confidence 6899999999999999887899999999999999999997 6777665543
No 17
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=95.30 E-value=0.065 Score=35.34 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=44.7
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeec
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 63 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrn 63 (118)
.-.|.+|...+.+++++.+.-..++.||.++-++..+-|.+..-+|+++|-.+
T Consensus 31 C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 31 CGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 45799999999999999887788999999999999888899876786666433
No 18
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.05 E-value=0.12 Score=38.65 Aligned_cols=80 Identities=9% Similarity=0.191 Sum_probs=62.3
Q ss_pred CchhHHHHHhhHHHHHHhHHhhccc-eEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCCh
Q 033474 7 TPRRLILNLEMDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDK 85 (118)
Q Consensus 7 ~~~~~~~Cm~mDevL~~~ae~v~nf-A~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~k 85 (118)
.|+|.-++.-.=-+|.+++++.... ..++.||+++-|+.-.-|.+..=+|++||=+++-+- ++++ +.+|
T Consensus 44 dp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~---------~i~G-~~~k 113 (132)
T PRK11509 44 DPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRG---------VLNG-IHPW 113 (132)
T ss_pred CCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEE---------EEeC-cCCH
Confidence 4778788887888999999998766 789999999999999999997766877775554432 3333 4677
Q ss_pred hhHHHHHHHHh
Q 033474 86 QEFIDIVETVY 96 (118)
Q Consensus 86 QefIDIiE~iy 96 (118)
+++...|+.+.
T Consensus 114 ~~l~~~I~~~L 124 (132)
T PRK11509 114 AELINLMRGLV 124 (132)
T ss_pred HHHHHHHHHHh
Confidence 88888888654
No 19
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=94.98 E-value=0.058 Score=35.51 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=45.3
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCC--cccccccccccCcceEEEEeecc
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~e--Vpdfn~myeL~dP~tvMFFfrnk 64 (118)
+-.|.++...+.++|++...-..++.+|.++ .+++.+-|.+..-+|++||-+++
T Consensus 30 C~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 30 CGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCC
Confidence 4579999999999999988777888999988 88888889998888876665554
No 20
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=94.89 E-value=0.21 Score=32.29 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=43.3
Q ss_pred hHHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEe
Q 033474 10 RLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 61 (118)
Q Consensus 10 ~~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFf 61 (118)
..-.|.++...|.++++..+.-..++.+|.++-+++.+-|.+..-+|+++|-
T Consensus 23 wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 23 RSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred CChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEe
Confidence 3567999999999999988766678999999999999999997766655553
No 21
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=94.64 E-value=0.16 Score=33.53 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=50.6
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHH
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFID 90 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefID 90 (118)
+-.|-.+...|.+++++.+.=..++.+|+++-|++.+-|.+..-+|++|| ++..+ ++-..| ..++++|.+
T Consensus 25 C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~-~~g~~-v~~~~g--------~~~~~~~~~ 94 (97)
T cd02949 25 CGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFF-KDKEL-VKEISG--------VKMKSEYRE 94 (97)
T ss_pred ChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEE-ECCeE-EEEEeC--------CccHHHHHH
Confidence 45799999999999998875456789999999999999988665565444 55433 333333 334466666
Q ss_pred HH
Q 033474 91 IV 92 (118)
Q Consensus 91 Ii 92 (118)
.+
T Consensus 95 ~l 96 (97)
T cd02949 95 FI 96 (97)
T ss_pred hh
Confidence 54
No 22
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=94.48 E-value=0.12 Score=35.45 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=43.2
Q ss_pred HHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeE
Q 033474 12 ILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 67 (118)
Q Consensus 12 ~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~ 67 (118)
-.|..|+.+|.++|++..+ ..++-||+++. +..+-|++..=+|+++|.+++-+.
T Consensus 37 ~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 37 PRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred CcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEEE
Confidence 4699999999999998766 45789999988 888888886655888887776543
No 23
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=94.45 E-value=0.15 Score=37.04 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=53.2
Q ss_pred HHH--hhHHHHHHhHHhh--ccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhH
Q 033474 13 LNL--EMDEVLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEF 88 (118)
Q Consensus 13 ~Cm--~mDevL~~~ae~v--~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQef 88 (118)
.|. .|-.+|+++|.+. +.=+.++-||+++-|+.-+-|.+..-+|+++|-+++ .++ =+|.. +++++
T Consensus 43 ~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~--~v~-~~G~~--------~~~~l 111 (120)
T cd03065 43 AQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDE--VIE-YDGEF--------AADTL 111 (120)
T ss_pred hChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCE--EEE-eeCCC--------CHHHH
Confidence 376 7888888888876 555899999999999999999998878987776554 344 22322 45777
Q ss_pred HHHHHHH
Q 033474 89 IDIVETV 95 (118)
Q Consensus 89 IDIiE~i 95 (118)
...|+.+
T Consensus 112 ~~~l~~~ 118 (120)
T cd03065 112 VEFLLDL 118 (120)
T ss_pred HHHHHHH
Confidence 7766654
No 24
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.39 E-value=0.17 Score=33.87 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=47.2
Q ss_pred HHHHHhhHHHHHHhHHhhcc------ceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCC
Q 033474 11 LILNLEMDEVLSSVAETIKN------FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 75 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~n------fA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn 75 (118)
.-.|.++...+.++|.++++ -..++-||.++-++..+-|.+..=+|+.||-.++.. ..-.+|..
T Consensus 30 C~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~-~~~~~g~~ 99 (108)
T cd02996 30 CRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMM-KREYRGQR 99 (108)
T ss_pred CHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCc-ceecCCCC
Confidence 45799999999999988753 256788999999999999999775676666444433 35555544
No 25
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.28 E-value=0.15 Score=33.58 Aligned_cols=50 Identities=8% Similarity=0.011 Sum_probs=42.7
Q ss_pred HHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEe
Q 033474 12 ILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 61 (118)
Q Consensus 12 ~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFf 61 (118)
-.|.+|-..+.++|++.+.-..++-||.++-|++.+-|.+..=+|+++|-
T Consensus 31 ~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 31 SHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred hHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 36999999999999999877888999999999998888887766766663
No 26
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=94.26 E-value=0.21 Score=30.99 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=44.0
Q ss_pred HHHHHhhHHHHHHhHHhh--ccceEEEEEeCCCcccccccccccCcceEEEEeecc
Q 033474 11 LILNLEMDEVLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v--~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnk 64 (118)
.-.|.++...+.++++.+ ..-..++.+|.++-+.+.+-|.+..-+|+ ++|++.
T Consensus 27 C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~-~~~~~~ 81 (101)
T cd02961 27 CGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTI-KLFPNG 81 (101)
T ss_pred CHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEE-EEEcCC
Confidence 458999999999999999 47788899999999999999999776675 555544
No 27
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=94.24 E-value=0.14 Score=35.09 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=47.1
Q ss_pred HHHHHhhHHHHHHhHHhhccc-eEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCC
Q 033474 11 LILNLEMDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 75 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nf-A~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn 75 (118)
+-.|..+..++.+++++.+.- ..++-||+++.++..+-|.+..-+|+++| ++.. .+...+|..
T Consensus 36 C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~-~~g~-~~~~~~G~~ 99 (111)
T cd02963 36 CFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI-INGQ-VTFYHDSSF 99 (111)
T ss_pred cHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE-ECCE-EEEEecCCC
Confidence 457999999999999998743 56789999999999999999776676566 4433 355555543
No 28
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=94.23 E-value=0.26 Score=37.04 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=45.4
Q ss_pred HHHHHhhHHHHHHhHHhhccc-eEEEEEeCCCcccccccccccC------cceEEEEeecceeE
Q 033474 11 LILNLEMDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYD------PSTVMFFFRNKHIM 67 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nf-A~IYlvDi~eVpdfn~myeL~d------P~tvMFFfrnkHm~ 67 (118)
.-.|.+|..++.++|++.+.- ..++.||+++-|+..+-|.+.. -+|+++|-.++.+.
T Consensus 59 C~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 59 SPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred CHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 446999999999999987632 6789999999999999999865 34777776666554
No 29
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=93.36 E-value=0.36 Score=30.98 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=42.6
Q ss_pred HHHHHhhHHHHHHhHHhhccc--eEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCC
Q 033474 11 LILNLEMDEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTG 73 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nf--A~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTg 73 (118)
+-.|.+|...+.++++++++. ..++.+|.++- +....+.+..-+|+++|-+++.-.....+|
T Consensus 30 C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g 93 (104)
T cd02995 30 CGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKSNPIKYEG 93 (104)
T ss_pred CHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcCCceEccC
Confidence 458999999999999998874 55677888764 344555566667777776665333333444
No 30
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=93.35 E-value=0.64 Score=31.84 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=51.1
Q ss_pred HHHHHhhHHHHH---HhHHhhccceEEEEEeCCC-------------cccccccccccCcceEEEEeecc-eeEEecCCC
Q 033474 11 LILNLEMDEVLS---SVAETIKNFAVIYLVDISE-------------VPDFNTMYELYDPSTVMFFFRNK-HIMIDLGTG 73 (118)
Q Consensus 11 ~~~Cm~mDevL~---~~ae~v~nfA~IYlvDi~e-------------Vpdfn~myeL~dP~tvMFFfrnk-Hm~vD~GTg 73 (118)
+--|.+|.+.+. .+++.+++-..++.+|+++ .+++..-|.+.--+|++|| ++. --.++
T Consensus 26 C~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~-~~~gg~~~~---- 100 (125)
T cd02951 26 CPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFL-DPEGGKEIA---- 100 (125)
T ss_pred CHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEE-cCCCCceeE----
Confidence 456999998885 5666565434566778765 2456677777555565444 321 11111
Q ss_pred CCceEEeecCChhhHHHHHHHHhhccccC
Q 033474 74 NNNKINWALKDKQEFIDIVETVYRGARKG 102 (118)
Q Consensus 74 nnnKin~~~~~kQefIDIiE~iyRgA~kG 102 (118)
++.+. .++++|..+++.+..++-||
T Consensus 101 ---~~~G~-~~~~~~~~~l~~~~~~~~~~ 125 (125)
T cd02951 101 ---RLPGY-LPPDEFLAYLEYVQEKAYKK 125 (125)
T ss_pred ---EecCC-CCHHHHHHHHHHHHhhhhcC
Confidence 23333 35689999999988877654
No 31
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=93.15 E-value=0.77 Score=35.02 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=53.6
Q ss_pred HHHHhhHHHHHHhHHhhccce-EEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHH
Q 033474 12 ILNLEMDEVLSSVAETIKNFA-VIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFID 90 (118)
Q Consensus 12 ~~Cm~mDevL~~~ae~v~nfA-~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefID 90 (118)
-.|-.|..+|..+|++..+.. .++-+|.++-|+..+-|.+.--+|+++|=+++... -++.+ ..++++|..
T Consensus 35 ~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~--------~~~~G-~~~~~~l~~ 105 (215)
T TIGR02187 35 QYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGG--------IRYTG-IPAGYEFAA 105 (215)
T ss_pred CchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeE--------EEEee-cCCHHHHHH
Confidence 359999999999998776542 24445555999999999998878987764333211 01222 456688889
Q ss_pred HHHHHhh
Q 033474 91 IVETVYR 97 (118)
Q Consensus 91 IiE~iyR 97 (118)
.|+.++.
T Consensus 106 ~i~~~~~ 112 (215)
T TIGR02187 106 LIEDIVR 112 (215)
T ss_pred HHHHHHH
Confidence 9998863
No 32
>PRK09381 trxA thioredoxin; Provisional
Probab=93.11 E-value=1.3 Score=29.37 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=43.7
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEE
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI 68 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~v 68 (118)
+-.|..+...|.+++++.+.--.++.+|.++-+...+-|.+..-+|++|| ++..+.-
T Consensus 33 C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 33 CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVAA 89 (109)
T ss_pred CHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE-eCCeEEE
Confidence 34699999999999998865457889999999998888888665565444 6655443
No 33
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=92.94 E-value=0.82 Score=36.47 Aligned_cols=80 Identities=13% Similarity=0.176 Sum_probs=59.0
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHH
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFID 90 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefID 90 (118)
+-.|.+|-..+.++|++.+.-..++.+|.++-++..+-|.+..-+|+++|-+++ .++.-.| ..+++++.+
T Consensus 64 C~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~--~v~~~~G--------~~s~e~L~~ 133 (224)
T PTZ00443 64 CSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGK--MYQYEGG--------DRSTEKLAA 133 (224)
T ss_pred ChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCE--EEEeeCC--------CCCHHHHHH
Confidence 457999999999999998877778889999999999999997766766665444 3444333 235577777
Q ss_pred HHHHHhhccc
Q 033474 91 IVETVYRGAR 100 (118)
Q Consensus 91 IiE~iyRgA~ 100 (118)
-++.-|....
T Consensus 134 fi~~~~~~~~ 143 (224)
T PTZ00443 134 FALGDFKKAL 143 (224)
T ss_pred HHHHHHHhhc
Confidence 7777665554
No 34
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=92.85 E-value=0.53 Score=30.34 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=41.6
Q ss_pred HHHHHhhHHHHHHhHHhhcc---ceEEEEEeCCCcccccccccccCcceEEEEeec
Q 033474 11 LILNLEMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 63 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~n---fA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrn 63 (118)
.-.|.++...+.+++++.+. -..++.+|.++-++..+-|.+..-+|+++| ++
T Consensus 28 C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~ 82 (102)
T cd03005 28 CGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF-KD 82 (102)
T ss_pred CHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE-eC
Confidence 34799999999999999875 567789999998888888888765576555 44
No 35
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=92.65 E-value=0.32 Score=32.85 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=42.7
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcc---cccccccccCcceEEEEeecceeEEecCCC
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVP---DFNTMYELYDPSTVMFFFRNKHIMIDLGTG 73 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVp---dfn~myeL~dP~tvMFFfrnkHm~vD~GTg 73 (118)
.-.|..|...|.+++++.++ ..++.||+++-+ ++.+-|.+.-.+|++|| ++.-+ ++--.|
T Consensus 27 C~~C~~~~p~l~~la~~~~~-v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~-~~G~~-v~~~~G 89 (103)
T cd02985 27 SGPSVKIYPTMVKLSRTCND-VVFLLVNGDENDSTMELCRREKIIEVPHFLFY-KDGEK-IHEEEG 89 (103)
T ss_pred CHhHHHHhHHHHHHHHHCCC-CEEEEEECCCChHHHHHHHHcCCCcCCEEEEE-eCCeE-EEEEeC
Confidence 35699999999999998854 467889988754 78888888776676555 55433 443333
No 36
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.33 Score=37.56 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=57.5
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHH
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFID 90 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefID 90 (118)
+=-|-.|+.+|.+++.+.++--..|.+|+++=|++-.=|++.--+|++-|=++.-+ .++.++.+. ..+..
T Consensus 73 CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~---------d~~vG~~~~-~~l~~ 142 (150)
T KOG0910|consen 73 CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV---------DRFVGAVPK-EQLRS 142 (150)
T ss_pred CccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe---------eeecccCCH-HHHHH
Confidence 34599999999999999999999999999999999999999666676777655544 466666554 34555
Q ss_pred HHHH
Q 033474 91 IVET 94 (118)
Q Consensus 91 IiE~ 94 (118)
.|+.
T Consensus 143 ~i~k 146 (150)
T KOG0910|consen 143 LIKK 146 (150)
T ss_pred HHHH
Confidence 5543
No 37
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.55 E-value=0.89 Score=29.70 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=40.2
Q ss_pred HHHHHhhHHHHHHhHHhhccc-eEEEEEeCCCcccccccccccCcceEEEE
Q 033474 11 LILNLEMDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFF 60 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nf-A~IYlvDi~eVpdfn~myeL~dP~tvMFF 60 (118)
.-.|.++..++.+++++.+.. ..++.+|.++-|+..+-|.+.--+|+++|
T Consensus 28 C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 28 CPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred CHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 346999999999999876543 56789999999998888899777776554
No 38
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.51 E-value=0.57 Score=33.38 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=47.1
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCc-----------ccccccccc----cCcceEEEEeecceeEEecCCCCC
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEV-----------PDFNTMYEL----YDPSTVMFFFRNKHIMIDLGTGNN 75 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eV-----------pdfn~myeL----~dP~tvMFFfrnkHm~vD~GTgnn 75 (118)
+--|..|.-+|.+++++ .+ ..||-||+++- ++|-+-|++ .-.+|+++|=++|.+..=.|
T Consensus 35 Cp~C~~~~P~l~~~~~~-~~-~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~~G---- 108 (122)
T TIGR01295 35 CPYCRKFSGTLSGVVAQ-TK-APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVRCG---- 108 (122)
T ss_pred ChhHHHHhHHHHHHHHh-cC-CcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEEeC----
Confidence 34699999999999998 33 56899999843 344454543 23788887777776643222
Q ss_pred ceEEeecCChhhHHHHH
Q 033474 76 NKINWALKDKQEFIDIV 92 (118)
Q Consensus 76 nKin~~~~~kQefIDIi 92 (118)
...+++++.++.
T Consensus 109 -----~~~~~~~l~~~~ 120 (122)
T TIGR01295 109 -----SSTTAQELQDIA 120 (122)
T ss_pred -----CCCCHHHHHHHh
Confidence 244567766654
No 39
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=91.30 E-value=0.43 Score=32.39 Aligned_cols=51 Identities=10% Similarity=0.221 Sum_probs=40.3
Q ss_pred HHHHhhHHHHHHhHHhhccceEEEEEeCC-CcccccccccccCcceEEEEeecc
Q 033474 12 ILNLEMDEVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 12 ~~Cm~mDevL~~~ae~v~nfA~IYlvDi~-eVpdfn~myeL~dP~tvMFFfrnk 64 (118)
-.|..|--.|.++|++.+++. ++.||.+ +-|+..+-|.+..=+|+++| ++.
T Consensus 31 ~~C~~~~p~l~~la~~~~~~~-~~~vd~~~~~~~l~~~~~V~~~PT~~lf-~~g 82 (100)
T cd02999 31 PFSASFRPHFNALSSMFPQIR-HLAIEESSIKPSLLSRYGVVGFPTILLF-NST 82 (100)
T ss_pred HHHHhHhHHHHHHHHHhccCc-eEEEECCCCCHHHHHhcCCeecCEEEEE-cCC
Confidence 359999999999999988854 5678988 78888899999776676555 443
No 40
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=91.06 E-value=1.8 Score=28.79 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=41.0
Q ss_pred HHHHHhhHHHHHHhHHhhccc---eEEEEEeCCCcccccccccccCcceEEEEeecc
Q 033474 11 LILNLEMDEVLSSVAETIKNF---AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nf---A~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnk 64 (118)
+-.|..+-..|.+++++.+.. ..++.+|.++-|++.+-|.+..-+|++|| ++.
T Consensus 27 C~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~-~~~ 82 (104)
T cd03000 27 CGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL-KGD 82 (104)
T ss_pred CHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEE-cCC
Confidence 346999999999999987532 55678899999999999999776776565 544
No 41
>PTZ00051 thioredoxin; Provisional
Probab=90.82 E-value=1.1 Score=28.82 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=39.2
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEE
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 60 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFF 60 (118)
.-.|.++...|.+++++..+. .++.+|.++.++..+-|.+..-+|+.+|
T Consensus 30 C~~C~~~~~~l~~l~~~~~~~-~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 30 CGPCKRIAPFYEECSKEYTKM-VFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred CHHHHHHhHHHHHHHHHcCCc-EEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 457999999999999987664 5678999999999888998765565544
No 42
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=90.35 E-value=1.4 Score=29.86 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=37.7
Q ss_pred HHHHHhhHHHHHHhHHhhccc-eEEEEEeCCC-cccccc-cccccCcceEEEEe
Q 033474 11 LILNLEMDEVLSSVAETIKNF-AVIYLVDISE-VPDFNT-MYELYDPSTVMFFF 61 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nf-A~IYlvDi~e-Vpdfn~-myeL~dP~tvMFFf 61 (118)
+-.|.+|..++.++|.+.+.= ..+..||.++ -.++.+ .|.+..-+|++||=
T Consensus 33 C~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~ 86 (109)
T cd02993 33 CPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFP 86 (109)
T ss_pred CHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEc
Confidence 446999999999999988742 5667889886 455553 57787777865553
No 43
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=90.33 E-value=1.2 Score=31.61 Aligned_cols=54 Identities=4% Similarity=0.004 Sum_probs=42.9
Q ss_pred HHHHhhHHHHHHhHHhhccceEEEEEeCCCccccc-ccccccCcceEEEEeeccee
Q 033474 12 ILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFN-TMYELYDPSTVMFFFRNKHI 66 (118)
Q Consensus 12 ~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn-~myeL~dP~tvMFFfrnkHm 66 (118)
--|..|--.+.++|++.+.-+.+.-||.++-++.. +-|.+.-=+|+++| ++.+.
T Consensus 42 ~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 42 AQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLY-YRSRG 96 (113)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEE-ECCcc
Confidence 35999999999999998877788999999988887 57888665687777 44333
No 44
>PHA02278 thioredoxin-like protein
Probab=89.87 E-value=0.76 Score=32.08 Aligned_cols=61 Identities=5% Similarity=0.075 Sum_probs=43.0
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCc----ccccccccccCcceEEEEeecceeEEecCCC
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEV----PDFNTMYELYDPSTVMFFFRNKHIMIDLGTG 73 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eV----pdfn~myeL~dP~tvMFFfrnkHm~vD~GTg 73 (118)
+-.|..|..++.+++++...-+.++-+|+++. |+..+-|++..=+|++|| ++.. .++-..|
T Consensus 26 CgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f-k~G~-~v~~~~G 90 (103)
T PHA02278 26 CGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY-KDGQ-LVKKYED 90 (103)
T ss_pred CHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE-ECCE-EEEEEeC
Confidence 34699999999999987433356899999975 678888998766686555 4432 3344444
No 45
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=89.63 E-value=1.5 Score=28.09 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=41.5
Q ss_pred HHHHHhhHHHHHHhHHhhc--cceEEEEEeCCC-cccccccccccCcceEEEEeec
Q 033474 11 LILNLEMDEVLSSVAETIK--NFAVIYLVDISE-VPDFNTMYELYDPSTVMFFFRN 63 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~--nfA~IYlvDi~e-Vpdfn~myeL~dP~tvMFFfrn 63 (118)
.-.|.++...+..++++.+ +-..++-+|.++ -+++.+-|.+..-+|+.||-.+
T Consensus 30 C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~ 85 (105)
T cd02998 30 CGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKG 85 (105)
T ss_pred CHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCC
Confidence 5689999999999999887 345677889989 8999998998776665455333
No 46
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=89.30 E-value=1.2 Score=33.73 Aligned_cols=54 Identities=7% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeeccee
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 66 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm 66 (118)
+-.|..|+.+|.++|.+-.+ ..++-||+++. +..+-|.+.-=+|+++|.+++-+
T Consensus 95 c~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 95 IPGCAALNSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred CchHHHHHHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEE
Confidence 34699999999999998754 67889999886 66667777655687777766544
No 47
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=89.20 E-value=1.2 Score=29.81 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHhhHHHHHHhHHhhc-cceEEEEEeCCCcccccccccccCcceEEEEeecc
Q 033474 11 LILNLEMDEVLSSVAETIK-NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~-nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnk 64 (118)
+-.|.+|-.+|.+++++.+ +...++.+|++ .++..+-|.+...+|++|| ++.
T Consensus 29 C~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~-~~g 81 (102)
T cd02948 29 CGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY-KNG 81 (102)
T ss_pred CHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE-ECC
Confidence 3579999999999999876 35668889998 6778888888776686555 443
No 48
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=89.19 E-value=1.9 Score=27.70 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=38.6
Q ss_pred HHHHHhhHHHHHHhHHhhccc--eEEEEEeCCC--cccccccccccCcceEEEEeecce
Q 033474 11 LILNLEMDEVLSSVAETIKNF--AVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNKH 65 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nf--A~IYlvDi~e--Vpdfn~myeL~dP~tvMFFfrnkH 65 (118)
.-.|.++...+..++++.++. ..+..+|.++ -+++.+-|.+...+|+ ++|++..
T Consensus 29 C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~-~~~~~g~ 86 (104)
T cd02997 29 CGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTF-KYFENGK 86 (104)
T ss_pred CHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEE-EEEeCCC
Confidence 347999999999999887632 3445578777 8888888888665565 4555544
No 49
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=89.05 E-value=1.5 Score=26.31 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=43.6
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCC-Cccccccccc--ccCcceEEEEeecce
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYE--LYDPSTVMFFFRNKH 65 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~-eVpdfn~mye--L~dP~tvMFFfrnkH 65 (118)
+-.|..+...|.+++++..+-..+..+|.. ..++..+.|+ .....++.+|.+.+.
T Consensus 44 C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 44 CPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 457999999999999988877778888886 8999999999 766566555554444
No 50
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=88.90 E-value=1.4 Score=29.03 Aligned_cols=50 Identities=16% Similarity=0.360 Sum_probs=37.1
Q ss_pred HHHHHhhHHHH---HHhHHhhccceEEEEEeCCC----cccccccccccCcceEEEE
Q 033474 11 LILNLEMDEVL---SSVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVMFF 60 (118)
Q Consensus 11 ~~~Cm~mDevL---~~~ae~v~nfA~IYlvDi~e----Vpdfn~myeL~dP~tvMFF 60 (118)
+-.|..|...+ .++++.+++-..++-+|+++ .+++.+-|.+..-+|++||
T Consensus 23 C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 23 CVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred hHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 45788888766 56777777556667789887 7888888888766676555
No 51
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=88.38 E-value=3.2 Score=30.13 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=52.0
Q ss_pred HHHHHhhHHHH---HHhHHhhccceEEEEEeCCCccccccc--------ccccCcceEEEEe-ecceeEEecCCCCCceE
Q 033474 11 LILNLEMDEVL---SSVAETIKNFAVIYLVDISEVPDFNTM--------YELYDPSTVMFFF-RNKHIMIDLGTGNNNKI 78 (118)
Q Consensus 11 ~~~Cm~mDevL---~~~ae~v~nfA~IYlvDi~eVpdfn~m--------yeL~dP~tvMFFf-rnkHm~vD~GTgnnnKi 78 (118)
+.-|..||... .++++.+.+-.+.+-+|.++-|+..+. |...-++|+.|+= .++.+.-+.|.+.-+++
T Consensus 27 C~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~ 106 (124)
T cd02955 27 CHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGGTYFPPEDRY 106 (124)
T ss_pred CHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeeeeecCCCCcC
Confidence 45699999744 346666643345567899998886553 3344566765653 36888888887777776
Q ss_pred EeecCChhhHHHHHHHH
Q 033474 79 NWALKDKQEFIDIVETV 95 (118)
Q Consensus 79 n~~~~~kQefIDIiE~i 95 (118)
.. |.|-++++.|
T Consensus 107 ~~-----~~~~~~~~~~ 118 (124)
T cd02955 107 GR-----PGFKTVLEKI 118 (124)
T ss_pred CC-----cCHHHHHHHH
Confidence 53 5666666554
No 52
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=88.30 E-value=4.7 Score=29.16 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=53.3
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCC--cccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhH
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEF 88 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~e--Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQef 88 (118)
+..|..|...|.+++++.+.-..++.||++. .++..+-|.+.-.+|++||-++. -.++ ++.+. .++++|
T Consensus 32 C~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G-~~v~-------~~~G~-~~~~~l 102 (142)
T cd02950 32 CTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG-NEEG-------QSIGL-QPKQVL 102 (142)
T ss_pred CHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC-CEEE-------EEeCC-CCHHHH
Confidence 4579999999999999876545667778765 34666677776666755553222 1222 22332 356889
Q ss_pred HHHHHHHhhcc
Q 033474 89 IDIVETVYRGA 99 (118)
Q Consensus 89 IDIiE~iyRgA 99 (118)
.++++.+..|.
T Consensus 103 ~~~l~~l~~~~ 113 (142)
T cd02950 103 AQNLDALVAGE 113 (142)
T ss_pred HHHHHHHHcCC
Confidence 99999988765
No 53
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=86.77 E-value=2 Score=26.20 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=38.7
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeeccee
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 66 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm 66 (118)
.--|..+-++|.++++.- .-..+..+|+++-|+..+.|.+..=+| +++.++|+
T Consensus 11 C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPt--i~i~~~~~ 63 (67)
T cd02973 11 CPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPA--IVINGKVE 63 (67)
T ss_pred CCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCE--EEECCEEE
Confidence 345888899999888753 335668889999898888888855455 45577765
No 54
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=85.10 E-value=2.6 Score=37.27 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=43.8
Q ss_pred HHHHHhhHHHHHHhHHhhcc-ceEEEEEeCCCcc-ccc-ccccccCcceEEEEeecceeEEec
Q 033474 11 LILNLEMDEVLSSVAETIKN-FAVIYLVDISEVP-DFN-TMYELYDPSTVMFFFRNKHIMIDL 70 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~n-fA~IYlvDi~eVp-dfn-~myeL~dP~tvMFFfrnkHm~vD~ 70 (118)
+-.|..|..++.++|++.+. -..++.||++.-+ ++. +-|.+..-+|++||-++++-.+.+
T Consensus 383 C~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y 445 (463)
T TIGR00424 383 CPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKY 445 (463)
T ss_pred ChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeC
Confidence 34699999999999998865 2567889888643 343 678888888988887655444444
No 55
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.84 E-value=4.5 Score=28.70 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=41.2
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecce
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 65 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkH 65 (118)
-|-.|==.+.++|.+-.+ |.++-||++|.+++-+=|++.-=+|. .|||+.-
T Consensus 35 PCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf-~f~k~g~ 85 (106)
T KOG0907|consen 35 PCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTF-VFYKGGE 85 (106)
T ss_pred chhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEE-EEEECCE
Confidence 377788899999999999 99999999998888888888666675 4445433
No 56
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=83.67 E-value=2.5 Score=30.73 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=39.5
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcc-------ccccccccc-CcceEEEE
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVP-------DFNTMYELY-DPSTVMFF 60 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVp-------dfn~myeL~-dP~tvMFF 60 (118)
.--|-.|.-+|.+++++.+.=..++-||+++.| ++-+-|.+. -=+|+|+|
T Consensus 40 C~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~ 97 (119)
T cd02952 40 CPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRW 97 (119)
T ss_pred CHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEE
Confidence 346999999999999988844677999998754 788888887 55587777
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=80.90 E-value=4.9 Score=35.49 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=39.7
Q ss_pred HHHHhhHHHHHHhHHhhccc-eEEEEEeCC-Ccccccc-cccccCcceEEEEe
Q 033474 12 ILNLEMDEVLSSVAETIKNF-AVIYLVDIS-EVPDFNT-MYELYDPSTVMFFF 61 (118)
Q Consensus 12 ~~Cm~mDevL~~~ae~v~nf-A~IYlvDi~-eVpdfn~-myeL~dP~tvMFFf 61 (118)
--|.+|...+.++|++++.- ..++.+|.+ +-.++.+ .|++..-+|+.||-
T Consensus 378 ~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 378 PFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFP 430 (457)
T ss_pred hHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEe
Confidence 46999999999999998654 678999998 6566664 68998888876654
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=80.66 E-value=5.4 Score=32.22 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=44.3
Q ss_pred HHHHHhhHHHHHHhHHhhccc---eEEEEEeCCCcccccccccccCcceEEEEeecce
Q 033474 11 LILNLEMDEVLSSVAETIKNF---AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 65 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nf---A~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkH 65 (118)
+-.|.++...+.++|+.++.. ..+..||.++=++..+-|.+...+|+++|-++++
T Consensus 30 C~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 30 CGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGED 87 (462)
T ss_pred CHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCcc
Confidence 347999999999999988764 6778899988888888888877678777765665
No 59
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=80.34 E-value=8 Score=29.46 Aligned_cols=68 Identities=9% Similarity=0.081 Sum_probs=47.8
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHHHH
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 92 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDIi 92 (118)
-|-.+..+|.+++.+- .-..++.+|+++-|+..+-|.+..-+|++|| ++. .. +.+ ..++++|.+.+
T Consensus 147 ~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~-~~~-~~----------~~G-~~~~~~l~~~l 212 (215)
T TIGR02187 147 YCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVIN-KGV-EE----------FVG-AYPEEQFLEYI 212 (215)
T ss_pred CcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEe-cCC-EE----------EEC-CCCHHHHHHHH
Confidence 4888889999998863 3355578999999999999999776776654 221 11 332 44678888877
Q ss_pred HH
Q 033474 93 ET 94 (118)
Q Consensus 93 E~ 94 (118)
+.
T Consensus 213 ~~ 214 (215)
T TIGR02187 213 LS 214 (215)
T ss_pred Hh
Confidence 63
No 60
>PTZ00062 glutaredoxin; Provisional
Probab=80.03 E-value=5.2 Score=31.61 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=36.4
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCC
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 75 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn 75 (118)
.|.+|+++|..++++-.+ ..++-||.+ |++.-=+|.+|| ++.- .+|-=.|-|
T Consensus 31 ~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~-~~g~-~i~r~~G~~ 82 (204)
T PTZ00062 31 EYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFY-QNSQ-LINSLEGCN 82 (204)
T ss_pred chHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEE-ECCE-EEeeeeCCC
Confidence 599999999999998766 667888877 777665665444 4432 455544533
No 61
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=79.96 E-value=4.4 Score=28.06 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=37.6
Q ss_pred HHHHHhhHHHHHHhHHhhccc---eEEEEEeC--CCcccccccccccCcceEEEEeec
Q 033474 11 LILNLEMDEVLSSVAETIKNF---AVIYLVDI--SEVPDFNTMYELYDPSTVMFFFRN 63 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nf---A~IYlvDi--~eVpdfn~myeL~dP~tvMFFfrn 63 (118)
.-.|..|-..+.+++++.+.. ..+..+|. ++.+++.+-|.+..-+|+.||-++
T Consensus 31 C~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~ 88 (114)
T cd02992 31 CGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPF 88 (114)
T ss_pred CHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCC
Confidence 447999999999999988753 44566663 457778888888665675555333
No 62
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=79.93 E-value=5.3 Score=24.75 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=48.5
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHH
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFID 90 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefID 90 (118)
.-.|-.+...|.+++...+.-..+..||+++-|+-.+-|.+.--+|++ ++++ -++.| ..+++++.+
T Consensus 11 C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~--~~g~-----------~~~~G-~~~~~~l~~ 76 (82)
T TIGR00411 11 CPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIV--INGD-----------VEFIG-APTKEELVE 76 (82)
T ss_pred CcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEE--ECCE-----------EEEec-CCCHHHHHH
Confidence 346999999999999877655677899999999887778875444532 3432 13333 346678777
Q ss_pred HHHH
Q 033474 91 IVET 94 (118)
Q Consensus 91 IiE~ 94 (118)
.++.
T Consensus 77 ~l~~ 80 (82)
T TIGR00411 77 AIKK 80 (82)
T ss_pred HHHh
Confidence 7764
No 63
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=73.13 E-value=8.7 Score=29.67 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecc
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnk 64 (118)
.-.|..|+.+|.++|.+-.. ..++-+|+++. ..-|.+..=+|+++|.+++
T Consensus 114 c~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~ 163 (192)
T cd02988 114 IPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLPTILVYRNGD 163 (192)
T ss_pred CchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCCEEEEEECCE
Confidence 34699999999999998654 56677887754 3456664445766665554
No 64
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=71.75 E-value=9.1 Score=26.86 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=30.6
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCccc-ccccccccC--cceEEEE
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPD-FNTMYELYD--PSTVMFF 60 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpd-fn~myeL~d--P~tvMFF 60 (118)
+--|..|+..+.+.++..+.-..++.||+++-++ ..+.|...- .+|++||
T Consensus 31 C~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 31 CGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred CHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEE
Confidence 4569999999998766432223466778776542 345666632 4564444
No 65
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=71.35 E-value=5.9 Score=28.26 Aligned_cols=31 Identities=26% Similarity=0.039 Sum_probs=28.5
Q ss_pred ceEEeecCChhhHHHHHHHHhhccccCceeE
Q 033474 76 NKINWALKDKQEFIDIVETVYRGARKGRGLV 106 (118)
Q Consensus 76 nKin~~~~~kQefIDIiE~iyRgA~kGkglV 106 (118)
.|+.+.+.+.||+-+.++..++-|..|||-|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv 154 (160)
T cd07034 124 PWPVLAPSSVQEAFDLALEAFELAEKYRLPV 154 (160)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 8999999999999999999999999998744
No 66
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=70.76 E-value=14 Score=33.03 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=49.2
Q ss_pred HHHHHhhHHHH---HHhHHhhccceEEEEEeCCC----cccccccccccCcceEEEEeec-ceeEEecCCCCCceEEeec
Q 033474 11 LILNLEMDEVL---SSVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVMFFFRN-KHIMIDLGTGNNNKINWAL 82 (118)
Q Consensus 11 ~~~Cm~mDevL---~~~ae~v~nfA~IYlvDi~e----Vpdfn~myeL~dP~tvMFFfrn-kHm~vD~GTgnnnKin~~~ 82 (118)
+..|..|++.. .+++++++++ +++-+|+++ .+++-+-|++.-++|++||=++ +-+.. .++.+.
T Consensus 486 C~~Ck~~e~~~~~~~~v~~~l~~~-~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~-------~r~~G~- 556 (571)
T PRK00293 486 CVACKEFEKYTFSDPQVQQALADT-VLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPD-------ARVTGF- 556 (571)
T ss_pred CHhHHHHHHHhcCCHHHHHHhcCC-EEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCccc-------ccccCC-
Confidence 56799998865 5677778886 456789874 4567777888888886554211 22111 223332
Q ss_pred CChhhHHHHHHHH
Q 033474 83 KDKQEFIDIVETV 95 (118)
Q Consensus 83 ~~kQefIDIiE~i 95 (118)
.++++|.+.++.+
T Consensus 557 ~~~~~f~~~L~~~ 569 (571)
T PRK00293 557 MDAAAFAAHLRQL 569 (571)
T ss_pred CCHHHHHHHHHHh
Confidence 3688999888763
No 67
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=68.97 E-value=4.1 Score=37.71 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=30.5
Q ss_pred EecCCCCCceEEeecCChhhHHHHHHHHhhccccCceeEEccCC
Q 033474 68 IDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 111 (118)
Q Consensus 68 vD~GTgnnnKin~~~~~kQefIDIiE~iyRgA~kGkglV~SP~d 111 (118)
-|-|.-||. .+.||+-+.+..+|||++|||.+-|.|.-
T Consensus 95 ~~agPtnNw------~~p~e~~~~m~~l~~G~MrGrtmyVvpf~ 132 (608)
T COG1274 95 EDAGPTNNW------MDPQEMRSEMNELFRGCMRGRTMYVVPFC 132 (608)
T ss_pred cccCCccCC------CCHHHHHHHHHHHHHhhhcCceEEEEeee
Confidence 355555554 36799999999999999999999988753
No 68
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=60.87 E-value=6.4 Score=28.89 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=25.2
Q ss_pred cccccccccccCcceEEEEeecceeEEecCCC
Q 033474 42 VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTG 73 (118)
Q Consensus 42 Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTg 73 (118)
.|||++.|.-.+-.--.+|||-+|++-|-=|-
T Consensus 46 ~pdfsEa~~~~~~~~qVLfYrT~~~~sDG~TT 77 (102)
T PF11399_consen 46 TPDFSEAYRKDDKHVQVLFYRTQHKKSDGITT 77 (102)
T ss_pred CCCchhheeeCCcEEEEEEEEEeeEcCCCCcc
Confidence 69999999886655556889999999886553
No 69
>PTZ00102 disulphide isomerase; Provisional
Probab=59.20 E-value=35 Score=28.21 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=43.4
Q ss_pred HHHHHhhHHHHHHhHHhhcc---ceEEEEEeCCCcccccccccccCcceEEEEeeccee
Q 033474 11 LILNLEMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 66 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~n---fA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm 66 (118)
+-.|.++-..+.++|+.++. -..++.||.++-++..+-|.+...+|+++|-+++.+
T Consensus 61 C~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 61 CGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred CHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceE
Confidence 45699998888888887753 377788999999999888999888887666555544
No 70
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=59.02 E-value=9.6 Score=35.42 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=30.3
Q ss_pred EecCCCCCceEEeecCChhhHHHHHHHHhhccccCceeEEccCC
Q 033474 68 IDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 111 (118)
Q Consensus 68 vD~GTgnnnKin~~~~~kQefIDIiE~iyRgA~kGkglV~SP~d 111 (118)
-|.|.-|| --+.+|+-..+..+|+|+||||.+.|-|.-
T Consensus 88 ~dagp~nn------w~~p~e~~~~l~~lf~G~M~GRTMyVipfs 125 (601)
T PRK04210 88 EDAGPTNN------WMDPAEMRETLKGLFKGCMRGRTMYVVPFS 125 (601)
T ss_pred hhcCCccC------cCCHHHHHHHHHHhcCCccCCCeEEEeeee
Confidence 35665555 246789999999999999999999988753
No 71
>PTZ00102 disulphide isomerase; Provisional
Probab=58.33 E-value=39 Score=27.88 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=50.4
Q ss_pred HHHHHhhHHHHHHhHHhhcc--ceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhH
Q 033474 11 LILNLEMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEF 88 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~n--fA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQef 88 (118)
+-.|..|-.++.++|.+.+. ...++.+|.++-+...+-|.+.--+|++||=+++.+.+ .+.+ -.+.+++
T Consensus 387 C~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~--------~~~G-~~~~~~l 457 (477)
T PTZ00102 387 CGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPI--------PYEG-ERTVEGF 457 (477)
T ss_pred CHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCccee--------EecC-cCCHHHH
Confidence 45799999999999988764 46678899887666666677766677644433332211 1222 2355777
Q ss_pred HHHHHHHh
Q 033474 89 IDIVETVY 96 (118)
Q Consensus 89 IDIiE~iy 96 (118)
.+.|+...
T Consensus 458 ~~~i~~~~ 465 (477)
T PTZ00102 458 KEFVNKHA 465 (477)
T ss_pred HHHHHHcC
Confidence 77777644
No 72
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=55.51 E-value=79 Score=25.56 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=34.9
Q ss_pred HHHHhhHHHHHHhHHhhcc---ceEEEEEeCCCcccccccccccCcceEEEE
Q 033474 12 ILNLEMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFF 60 (118)
Q Consensus 12 ~~Cm~mDevL~~~ae~v~n---fA~IYlvDi~eVpdfn~myeL~dP~tvMFF 60 (118)
-.|-.|...+.++|+..++ -..++-+|+++- +... |.+..-+|+.||
T Consensus 377 ~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-~~~~-~~i~~~Pt~~~~ 426 (462)
T TIGR01130 377 GHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-DVPP-FEVEGFPTIKFV 426 (462)
T ss_pred HhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-ccCC-CCccccCEEEEE
Confidence 4699999999999999987 567888997642 3333 777666775444
No 73
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=55.37 E-value=24 Score=26.51 Aligned_cols=79 Identities=16% Similarity=0.412 Sum_probs=56.2
Q ss_pred HHHHHhHHhhccceEEEEEeCCCcccccccccc---cCcceEEEEeecceeEEecCC-C----------------CCceE
Q 033474 19 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL---YDPSTVMFFFRNKHIMIDLGT-G----------------NNNKI 78 (118)
Q Consensus 19 evL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL---~dP~tvMFFfrnkHm~vD~GT-g----------------nnnKi 78 (118)
+.+.++.+.++++-.+|+||.+-++. +++=+| .-+. .+++-+|+=|+.-+|. + +++-+
T Consensus 5 ~~v~~l~e~l~~y~~v~iv~~~gl~~-~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~~~l 82 (163)
T cd05796 5 KLVENIREAVDKYKYIYVFSVDNMRN-NKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQVGL 82 (163)
T ss_pred HHHHHHHHHHHhCCEEEEEEecCCCH-HHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCCEEE
Confidence 67889999999999999999988764 333344 2234 6899999999987774 1 12234
Q ss_pred EeecCChhhHHHHHHHHhhcc
Q 033474 79 NWALKDKQEFIDIVETVYRGA 99 (118)
Q Consensus 79 n~~~~~kQefIDIiE~iyRgA 99 (118)
.|.=+|..+..++++.--+.+
T Consensus 83 ift~~dp~~v~k~l~~~~~~~ 103 (163)
T cd05796 83 LFTNEPPEEVIEYFDSYSEPD 103 (163)
T ss_pred EEECCCHHHHHHHHHHcCCcc
Confidence 455567788888888765554
No 74
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=55.17 E-value=21 Score=27.09 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=55.8
Q ss_pred HHHHHhHHhhccceEEEEEeCCCcccccccccc----cCcceEEEEeecceeEEecCCC---------------CCceEE
Q 033474 19 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL----YDPSTVMFFFRNKHIMIDLGTG---------------NNNKIN 79 (118)
Q Consensus 19 evL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL----~dP~tvMFFfrnkHm~vD~GTg---------------nnnKin 79 (118)
+++.++.+.++++-.+|++|.+-++. +++=+| .+ -+.+++.+|+=|+.-+|.- +++-+.
T Consensus 5 ~~v~el~e~l~~~~~v~v~~~~gl~~-~ql~~lR~~lr~-~~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~li 82 (175)
T cd05795 5 EYVEKLTELLKSYPKVLIVDADNVGS-KQLQKIRRSLRG-KAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGFI 82 (175)
T ss_pred HHHHHHHHHHHhCCEEEEEEecCCCh-HHHHHHHHHhhC-CCEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEEEE
Confidence 57788999999999999999988764 333343 32 2568999999999977752 223345
Q ss_pred eecCChhhHHHHHHHHhhcc
Q 033474 80 WALKDKQEFIDIVETVYRGA 99 (118)
Q Consensus 80 ~~~~~kQefIDIiE~iyRgA 99 (118)
|.-+|..+...+++.--+.+
T Consensus 83 Ft~~dp~~v~k~l~~~~~~~ 102 (175)
T cd05795 83 FTNGDPFEIRKILEENKVPA 102 (175)
T ss_pred EECCCHHHHHHHHHHcCCcc
Confidence 55567777777777655443
No 75
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=51.81 E-value=62 Score=20.73 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=41.8
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHH
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFID 90 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefID 90 (118)
.--|-.+-+.+..++++. + ..+=++|+++.++. +=|.+..-+|+ +-+++ -++.+...+++|+..
T Consensus 10 C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~~-~~ygv~~vPal--vIng~-----------~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 10 CPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEEI-EKYGVMSVPAL--VINGK-----------VVFVGRVPSKEELKE 73 (76)
T ss_dssp CTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHHH-HHTT-SSSSEE--EETTE-----------EEEESS--HHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHHH-HHcCCCCCCEE--EECCE-----------EEEEecCCCHHHHHH
Confidence 456888888888888876 4 44455666555555 44777665663 22322 345666889999988
Q ss_pred HHH
Q 033474 91 IVE 93 (118)
Q Consensus 91 IiE 93 (118)
++|
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 876
No 76
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.29 E-value=13 Score=30.72 Aligned_cols=52 Identities=25% Similarity=0.471 Sum_probs=41.5
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccC-cceEEEEeecc
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYD-PSTVMFFFRNK 64 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~d-P~tvMFFfrnk 64 (118)
...|-+||+++..+|+.. +-+...-.+.++.|+-..++++.- |-.+ ||+..+
T Consensus 29 a~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~-~~~~~~ 81 (227)
T KOG0911|consen 29 AVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFV-FFFLGE 81 (227)
T ss_pred hhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceee-eeecch
Confidence 347999999999999999 667778889999999999999954 6665 444343
No 77
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=49.55 E-value=16 Score=33.79 Aligned_cols=37 Identities=27% Similarity=0.542 Sum_probs=30.1
Q ss_pred ecCCCCCceEEeecCChhhHHHHHHHHhhccccCceeEEccCC
Q 033474 69 DLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 111 (118)
Q Consensus 69 D~GTgnnnKin~~~~~kQefIDIiE~iyRgA~kGkglV~SP~d 111 (118)
|.|.-|| --+.+|+...+..+|+|.||||.+-|-|.-
T Consensus 75 dagp~nn------w~~p~e~~~~l~~lf~G~M~GRTMYVipfs 111 (579)
T cd00819 75 DAGPTNN------WMDPEEMKAELKELFKGCMRGRTMYVIPFS 111 (579)
T ss_pred ccCCccc------cCCHHHHHHHHHhhCCcccCCCeEEEEeee
Confidence 5666555 247799999999999999999999988753
No 78
>PF14479 HeLo: Prion-inhibition and propagation; PDB: 2WVQ_A 2WVN_A 2WVO_A.
Probab=49.16 E-value=14 Score=27.66 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=14.8
Q ss_pred CCCCceEEeecCChhhHHHHHHHH
Q 033474 72 TGNNNKINWALKDKQEFIDIVETV 95 (118)
Q Consensus 72 TgnnnKin~~~~~kQefIDIiE~i 95 (118)
++-..|+.||+.||+.|=++|+.+
T Consensus 146 ~~~~~r~~Wai~Dk~~F~~lI~~l 169 (212)
T PF14479_consen 146 TSLPKRARWAIYDKEKFERLIEDL 169 (212)
T ss_dssp S-S-----EEE-SHHHHHHHHHHH
T ss_pred ccccccceeeecchHHHHHHHHHH
Confidence 455578999999999999999875
No 79
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=39.59 E-value=49 Score=27.42 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=44.7
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeec
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 63 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrn 63 (118)
-|..+=....+++..++....+-.||.++-++..+.|++...+|+.+|..+
T Consensus 61 ~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 61 HCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred chhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC
Confidence 477777778889998888888899999999999999999999998888766
No 80
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=39.43 E-value=39 Score=24.92 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=27.8
Q ss_pred ceEEeecCChhhHHHHHHHHhhccccCceeE
Q 033474 76 NKINWALKDKQEFIDIVETVYRGARKGRGLV 106 (118)
Q Consensus 76 nKin~~~~~kQefIDIiE~iyRgA~kGkglV 106 (118)
.|+.+.+++.++....++..|+.|..|||=|
T Consensus 126 tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV 156 (162)
T cd07038 126 TCAAARLTDPENAAEEIDRVLRTALRESRPV 156 (162)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHHHHHCCCCE
Confidence 5889999999999999999999999998844
No 81
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=39.37 E-value=14 Score=25.73 Aligned_cols=37 Identities=19% Similarity=0.558 Sum_probs=28.0
Q ss_pred HhhHHHHHHhHHhhccc--eEEEEEeCCCcccccccccc
Q 033474 15 LEMDEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYEL 51 (118)
Q Consensus 15 m~mDevL~~~ae~v~nf--A~IYlvDi~eVpdfn~myeL 51 (118)
-.++.+|.+.--.+++. ..+|+.|+++.+.+++.|+-
T Consensus 50 ~ni~~~L~~~G~~~~dvv~~~~yl~d~~~~~~~~~v~~~ 88 (121)
T PF01042_consen 50 DNIERILAAAGASLDDVVKVTVYLTDMSDFPAVNEVWKE 88 (121)
T ss_dssp HHHHHHHHHTTS-GGGEEEEEEEESSGGGHHHHHHHHHH
T ss_pred HhhhhhhhcCCCcceeEeeeeehhhhhhhhHHHHHHHHH
Confidence 45677777776666665 57899999999998888775
No 82
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=38.30 E-value=2e+02 Score=23.25 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=20.7
Q ss_pred HHHHhhHHHHHHhHHhhccceEEEEEeCCC
Q 033474 12 ILNLEMDEVLSSVAETIKNFAVIYLVDISE 41 (118)
Q Consensus 12 ~~Cm~mDevL~~~ae~v~nfA~IYlvDi~e 41 (118)
-.|.++--+|..++++-+ + .|..|+++.
T Consensus 179 p~C~~~~P~L~~la~~yg-~-~Vi~VsvD~ 206 (271)
T TIGR02740 179 PYCHQQAPILQAFEDRYG-I-EVLPVSVDG 206 (271)
T ss_pred ccHHHHhHHHHHHHHHcC-c-EEEEEeCCC
Confidence 359999999999999864 4 345566655
No 83
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=38.27 E-value=11 Score=27.17 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHhhHHHHHHhHHhhccc--eEEEEEeCCCccccccccc
Q 033474 14 NLEMDEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYE 50 (118)
Q Consensus 14 Cm~mDevL~~~ae~v~nf--A~IYlvDi~eVpdfn~mye 50 (118)
...++++|...--.+++. ..||+.|++..+.+|+.|+
T Consensus 56 l~ni~~iL~~aG~~~~dvv~~~iyl~d~~~~~~~~~~~~ 94 (127)
T TIGR03610 56 LETIKSVIETAGGTMDDVTFNHIFIRDWADYAAINEVYA 94 (127)
T ss_pred HHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHH
Confidence 345666666655555554 5789999999999998886
No 84
>PHA02152 hypothetical protein
Probab=38.11 E-value=24 Score=25.70 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=29.3
Q ss_pred cCcceEEEEeecceeEEecCCCCCceEEeecCChhhHHHHHHHHhhcccc
Q 033474 52 YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 101 (118)
Q Consensus 52 ~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDIiE~iyRgA~k 101 (118)
..|+|| -||+.+.=+||.|-|||-=+ +..|.|---.||.++ .||+=
T Consensus 2 sspfsi-~fy~dr~~~v~~~ygnhgwi--sp~~i~~a~~ii~vv-~g~~~ 47 (96)
T PHA02152 2 SSPFTV-EFYNDRNEKVDVRYGNHGWV--SPSNIRYAENIINVV-NGARF 47 (96)
T ss_pred CCceEE-EEeccccccccccccccCcc--ChhHHHHHHHHHHhh-cccch
Confidence 468996 67788899999999998522 244444433444332 45544
No 85
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=38.04 E-value=10 Score=25.81 Aligned_cols=38 Identities=24% Similarity=0.522 Sum_probs=28.8
Q ss_pred HHhhHHHHHHhHHhhcc--ceEEEEEeCCCcccccccccc
Q 033474 14 NLEMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYEL 51 (118)
Q Consensus 14 Cm~mDevL~~~ae~v~n--fA~IYlvDi~eVpdfn~myeL 51 (118)
+-.++++|...--.+++ ...+|+.|++..+.+|+.|.-
T Consensus 32 ~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~ 71 (101)
T cd06155 32 FSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGT 71 (101)
T ss_pred HHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHH
Confidence 34566777766656666 378899999999999998874
No 86
>PF05972 APC_15aa: APC 15 residue motif; InterPro: IPR009240 The 15 aa repeat is found in the APC protein family. It is involved in binding beta-catenin [] along with the IPR009223 from INTERPRO repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1JPP_C.
Probab=36.45 E-value=13 Score=19.39 Aligned_cols=10 Identities=60% Similarity=0.982 Sum_probs=4.9
Q ss_pred ccCCcccccC
Q 033474 108 APKDYSTKYR 117 (118)
Q Consensus 108 SP~dys~~~~ 117 (118)
-|.|||.||.
T Consensus 4 qP~dyS~kY~ 13 (16)
T PF05972_consen 4 QPIDYSLKYS 13 (16)
T ss_dssp ----CCCCTT
T ss_pred cccchhhhcc
Confidence 3889998874
No 87
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=35.97 E-value=2.6e+02 Score=24.55 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=48.2
Q ss_pred HHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeEEecCCCCCceEEee-cCChhhHHHH
Q 033474 13 LNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWA-LKDKQEFIDI 91 (118)
Q Consensus 13 ~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~-~~~kQefIDI 91 (118)
.|..+-++|..+++ ++.--.+-..|..+=++--+-|.+..-+++.+ .| +.|+...|.|. +..=.||=.+
T Consensus 380 ~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i--------~~-~~~~~~~i~f~g~P~G~Ef~s~ 449 (555)
T TIGR03143 380 KSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVAL--------LD-DDGNYTGLKFHGVPSGHELNSF 449 (555)
T ss_pred hhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEE--------Ee-CCCcccceEEEecCccHhHHHH
Confidence 56666677766665 44433333444432222222333322223222 11 23445668886 9999999999
Q ss_pred HHHHhhccccCcee
Q 033474 92 VETVYRGARKGRGL 105 (118)
Q Consensus 92 iE~iyRgA~kGkgl 105 (118)
|++|+.-+..|.+|
T Consensus 450 i~~i~~~~~~~~~l 463 (555)
T TIGR03143 450 ILALYNAAGPGQPL 463 (555)
T ss_pred HHHHHHhcCCCCCC
Confidence 99999999777765
No 88
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=35.68 E-value=73 Score=20.93 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=23.1
Q ss_pred ecceeEEecCCCCCceEEeecCChhhHHHHHHH
Q 033474 62 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 94 (118)
Q Consensus 62 rnkHm~vD~GTgnnnKin~~~~~kQefIDIiE~ 94 (118)
--+.+.+.+|.++ .+--+..++++||.-+..
T Consensus 42 S~~rl~I~y~~~~--~i~IsP~~~~~FI~~L~k 72 (74)
T PF06713_consen 42 SLDRLEIYYGKYK--SILISPKDKEEFIAELQK 72 (74)
T ss_pred cccEEEEEECCCC--EEEEECCCHHHHHHHHHh
Confidence 3578888888333 377789999999987754
No 89
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=35.45 E-value=56 Score=22.97 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.3
Q ss_pred ceEEeecCChhhHHHHHHHHhhccccC-cee
Q 033474 76 NKINWALKDKQEFIDIVETVYRGARKG-RGL 105 (118)
Q Consensus 76 nKin~~~~~kQefIDIiE~iyRgA~kG-kgl 105 (118)
.|+.+.+++.++.-+.++..++-|..+ +|=
T Consensus 118 ~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gP 148 (155)
T cd07035 118 TKWAYRVTSPEEIPEALRRAFRIALSGRPGP 148 (155)
T ss_pred hceEEEcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 488889999999999999999999877 453
No 90
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=34.87 E-value=61 Score=21.83 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=37.0
Q ss_pred HHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecc
Q 033474 12 ILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 64 (118)
Q Consensus 12 ~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnk 64 (118)
--|-...+++.++++.-.+ ..+..+|+++.|+.-+-|.+.--+|+ +.+++
T Consensus 25 ~~C~~~~~~~~~l~~~~~~-i~~~~vd~~~~~e~a~~~~V~~vPt~--vidG~ 74 (89)
T cd03026 25 HNCPDVVQALNLMAVLNPN-IEHEMIDGALFQDEVEERGIMSVPAI--FLNGE 74 (89)
T ss_pred CCcHHHHHHHHHHHHHCCC-ceEEEEEhHhCHHHHHHcCCccCCEE--EECCE
Confidence 4578888888888875434 56789999999998888888665553 33554
No 91
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=34.66 E-value=1.4e+02 Score=20.02 Aligned_cols=75 Identities=13% Similarity=0.210 Sum_probs=44.9
Q ss_pred HHHHhhHH-HH--HHhHHhhccceEEEEEeCCC--cccccccccccCcceEEEEeecceeEEecCCCCC-ceEEeecCCh
Q 033474 12 ILNLEMDE-VL--SSVAETIKNFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN-NKINWALKDK 85 (118)
Q Consensus 12 ~~Cm~mDe-vL--~~~ae~v~nfA~IYlvDi~e--Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn-nKin~~~~~k 85 (118)
..|-.|++ +| ..+.+.+++-.+.+.+|+++ -..|-..|.....++++|+ ..+ +|.. ..+.+.. ++
T Consensus 30 ~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i-~~~-------~g~~l~~~~G~~-~~ 100 (114)
T cd02958 30 FDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII-DPR-------TGEVLKVWSGNI-TP 100 (114)
T ss_pred chHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE-eCc-------cCcEeEEEcCCC-CH
Confidence 46888876 44 23455566566778889874 5556677777666665554 332 3332 2344444 66
Q ss_pred hhHHHHHHHH
Q 033474 86 QEFIDIVETV 95 (118)
Q Consensus 86 QefIDIiE~i 95 (118)
++|+..++.+
T Consensus 101 ~~f~~~L~~~ 110 (114)
T cd02958 101 EDLLSQLIEF 110 (114)
T ss_pred HHHHHHHHHH
Confidence 7888777654
No 92
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=34.37 E-value=48 Score=29.69 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=32.5
Q ss_pred CceEEeecCChhhHHHHHHHHhhccccCc-ee--EEccCCcc
Q 033474 75 NNKINWALKDKQEFIDIVETVYRGARKGR-GL--VIAPKDYS 113 (118)
Q Consensus 75 nnKin~~~~~kQefIDIiE~iyRgA~kGk-gl--V~SP~dys 113 (118)
-.|+++.+.+.+|+-++++..||-|..|| |- |.=|+|..
T Consensus 122 ~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~ 163 (550)
T COG0028 122 ITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVL 163 (550)
T ss_pred hheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHh
Confidence 35999999999999999999999999888 54 45577643
No 93
>KOG4122 consensus Mitochondrial/chloroplast ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=32.34 E-value=44 Score=20.90 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=21.0
Q ss_pred HHHHHhhccccCceeEEccCCcccccC
Q 033474 91 IVETVYRGARKGRGLVIAPKDYSTKYR 117 (118)
Q Consensus 91 IiE~iyRgA~kGkglV~SP~dys~~~~ 117 (118)
..+--|-=-++||+.|+||.....++|
T Consensus 10 ~C~~Cy~VrRrgR~yViC~~~prHKqr 36 (38)
T KOG4122|consen 10 RCKDCYLVRRRGRVYVICKTHPRHKQR 36 (38)
T ss_pred hhhhceEEEEcccEEEEcCCCcchhhh
Confidence 445555566899999999998888765
No 94
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=31.67 E-value=37 Score=31.68 Aligned_cols=39 Identities=31% Similarity=0.588 Sum_probs=28.9
Q ss_pred HHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeecceeE
Q 033474 19 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 67 (118)
Q Consensus 19 evL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm~ 67 (118)
|+|.-+|. ..|-.|.++|.+.+ ||.. ..=-||||.+|+.
T Consensus 26 ELLKnLal--~gf~~IhiIDlDTI-------DlSN-LNRQFLFrkkhVg 64 (603)
T KOG2013|consen 26 ELLKNLAL--TGFEEIHIIDLDTI-------DLSN-LNRQFLFRKKHVG 64 (603)
T ss_pred HHHHHHHH--hcCCeeEEEeccce-------eccc-hhhhheeehhhcC
Confidence 66776664 68999999999987 5533 1224999999983
No 95
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=31.66 E-value=24 Score=27.77 Aligned_cols=21 Identities=38% Similarity=0.798 Sum_probs=14.9
Q ss_pred ccCcceEEEEeecceeEEecCCCC
Q 033474 51 LYDPSTVMFFFRNKHIMIDLGTGN 74 (118)
Q Consensus 51 L~dP~tvMFFfrnkHm~vD~GTgn 74 (118)
||-|-.+- -|.|.+||.|||=
T Consensus 73 lYVPGkl~---d~~k~lVDIGTGY 93 (153)
T KOG3048|consen 73 LYVPGKLS---DNSKFLVDIGTGY 93 (153)
T ss_pred eeccceec---cccceeEeccCce
Confidence 35566543 3788899999993
No 96
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=30.76 E-value=19 Score=26.13 Aligned_cols=36 Identities=19% Similarity=0.550 Sum_probs=29.5
Q ss_pred hhHHHHHHhHHhhccc--eEEEEEeCCCcccccccccc
Q 033474 16 EMDEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYEL 51 (118)
Q Consensus 16 ~mDevL~~~ae~v~nf--A~IYlvDi~eVpdfn~myeL 51 (118)
.++++|..+-.++++. ..||+.|+..-+.+|+.|+.
T Consensus 59 ni~a~L~~aG~~~~~Vvk~~v~l~d~~~f~~~n~v~~~ 96 (130)
T COG0251 59 NIKAVLEAAGSTLDDVVKVTVFLTDMNDFAAMNEVYDE 96 (130)
T ss_pred HHHHHHHHcCCCHHHEEEEEEEecCchHHHHHHHHHHH
Confidence 3677777777777776 67899999999999999987
No 97
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=30.55 E-value=38 Score=23.95 Aligned_cols=17 Identities=18% Similarity=0.587 Sum_probs=15.0
Q ss_pred CChhhHHHHHHHHhhcc
Q 033474 83 KDKQEFIDIVETVYRGA 99 (118)
Q Consensus 83 ~~kQefIDIiE~iyRgA 99 (118)
-+++|||++|+.|+.+-
T Consensus 10 yTE~EFl~~v~~i~~~~ 26 (85)
T PF01320_consen 10 YTESEFLEFVKEIFNAE 26 (85)
T ss_dssp SBHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 46899999999999885
No 98
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=29.35 E-value=89 Score=26.28 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=62.4
Q ss_pred HHHHHHhHHhhccceEEEEEeCCCcccccccccccC---cceEEEEeecceeEEecCCC---------------CCceEE
Q 033474 18 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYD---PSTVMFFFRNKHIMIDLGTG---------------NNNKIN 79 (118)
Q Consensus 18 DevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~d---P~tvMFFfrnkHm~vD~GTg---------------nnnKin 79 (118)
.+...++.+.++++-.||+||.+-|+. ++|=+|.. +-+.+++-+|+=|+.=+|.- +|+-+.
T Consensus 11 ~~~v~~l~e~l~~y~~v~vv~~~nv~s-~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~~gli 89 (310)
T PTZ00135 11 KAYFEKLYELLEKYKKILIVSVDNVGS-KQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVGFV 89 (310)
T ss_pred HHHHHHHHHHHHhCCEEEEEEcCCCCH-HHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhccCCEEEE
Confidence 357788999999999999999988764 45555511 23568899999998866642 122344
Q ss_pred eecCChhhHHHHHHHHhhccccCceeEEccCC
Q 033474 80 WALKDKQEFIDIVETVYRGARKGRGLVIAPKD 111 (118)
Q Consensus 80 ~~~~~kQefIDIiE~iyRgA~kGkglV~SP~d 111 (118)
|.-+|..+..++++.--+.+ --|+=.++|.|
T Consensus 90 FTn~dp~ev~k~l~~~k~~~-~AKaG~iAp~d 120 (310)
T PTZ00135 90 FTKDDLFEVKPVILENKVPA-PARAGVIAPID 120 (310)
T ss_pred EECCCHHHHHHHHHHcCCcc-ccccCCCCCce
Confidence 55567778888777765553 34444566665
No 99
>PF00821 PEPCK: Phosphoenolpyruvate carboxykinase; InterPro: IPR008209 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents GTP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004611 phosphoenolpyruvate carboxykinase activity, 0005525 GTP binding, 0006094 gluconeogenesis; PDB: 2FAH_A 2FAF_A 2QZY_B 2ZCI_D 3MOE_A 3DT7_B 2RKD_A 2RKA_A 2RK8_A 2QF2_B ....
Probab=29.19 E-value=27 Score=32.39 Aligned_cols=36 Identities=33% Similarity=0.675 Sum_probs=28.3
Q ss_pred ecCCCCCceEEeecCChhhHHHHHHHHhhccccCceeEEccC
Q 033474 69 DLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPK 110 (118)
Q Consensus 69 D~GTgnnnKin~~~~~kQefIDIiE~iyRgA~kGkglV~SP~ 110 (118)
|.|.-|| | -+.+|+..-+...|+|.||||.+.|-|.
T Consensus 75 d~~p~~n----w--~~~~~~~~~l~~~f~G~M~GRtMyVipf 110 (586)
T PF00821_consen 75 DAGPTNN----W--MDPEEMKAELDELFPGCMKGRTMYVIPF 110 (586)
T ss_dssp HHSTTSS----E--E-HHHHHHHHHCCSTTTTTTSEEEEEEE
T ss_pred ccCCccC----C--CCHHHHHHHHHHhchhhhhhchHHhhHh
Confidence 5555555 2 3678999999999999999999998774
No 100
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=29.07 E-value=2.2e+02 Score=20.45 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=33.4
Q ss_pred hhHHHHHHhHHhhccc-eEEEEEeCCCccccccccccc--CcceE
Q 033474 16 EMDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELY--DPSTV 57 (118)
Q Consensus 16 ~mDevL~~~ae~v~nf-A~IYlvDi~eVpdfn~myeL~--dP~tv 57 (118)
++-+.|.++|++.+.= ..+..+|.++=+.+-+.|.|. +.+++
T Consensus 41 ~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v 85 (130)
T cd02983 41 KYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAM 85 (130)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEE
Confidence 4567889999998887 678889999988899999983 34453
No 101
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=28.46 E-value=25 Score=22.89 Aligned_cols=38 Identities=18% Similarity=0.487 Sum_probs=28.5
Q ss_pred HHhhHHHHHHhHHhhccc--eEEEEEeCCCcccccccccc
Q 033474 14 NLEMDEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYEL 51 (118)
Q Consensus 14 Cm~mDevL~~~ae~v~nf--A~IYlvDi~eVpdfn~myeL 51 (118)
...++++|.+..-.+++. ..+|+.|.+..+.+|+.|+.
T Consensus 38 ~~ni~~~L~~~g~~~~~iv~~~~yv~~~~~~~~~~~~~~~ 77 (107)
T cd00448 38 LENLEAVLEAAGGSLDDVVKVTVYLTDMADFAAVNEVYDE 77 (107)
T ss_pred HHHHHHHHHHcCCCHHHEEEEEEEEecHHHHHHHHHHHHH
Confidence 345677777665555553 68899999999999988875
No 102
>PHA02125 thioredoxin-like protein
Probab=27.39 E-value=1e+02 Score=19.52 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=31.8
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEE
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVM 58 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvM 58 (118)
.--|-.+..+|.+++. ..+-||.++.++..+-|++..-+|++
T Consensus 10 C~~Ck~~~~~l~~~~~------~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 10 CANCKMVKPMLANVEY------TYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred CHhHHHHHHHHHHHhh------eEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 4569999999976642 34668888999999999987756654
No 103
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=27.08 E-value=99 Score=22.63 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=27.3
Q ss_pred HhhHHHHHHhHHhhccceEEEEEeCCCccccc
Q 033474 15 LEMDEVLSSVAETIKNFAVIYLVDISEVPDFN 46 (118)
Q Consensus 15 m~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn 46 (118)
|.+.+.|.++..++.-...|.+.|.|-||-..
T Consensus 1 ~~l~~~L~~ll~~v~Gl~~I~itDrDGvpi~~ 32 (119)
T PF08923_consen 1 DELKRFLQKLLSRVDGLQAIVITDRDGVPIAK 32 (119)
T ss_dssp HHHHHHHHHHGGGSTTEEEEEEEETTS-EEEE
T ss_pred ChHHHHHHHHHhccCCeEEEEEECCCCcEEEE
Confidence 46778899999999999999999999999876
No 104
>PF07978 NIPSNAP: NIPSNAP ; InterPro: IPR012577 Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family, which have putative roles in vesicular transport []. This domain is often found in duplicate.; PDB: 1VQY_D 2AP6_H.
Probab=26.89 E-value=1.6e+02 Score=18.99 Aligned_cols=60 Identities=15% Similarity=0.291 Sum_probs=42.7
Q ss_pred EEEEEeCCCcccccccccc-----cC--cceEEEEeecceeEEecCCCCCceEEeecCChhhHHHHHHHHhh
Q 033474 33 VIYLVDISEVPDFNTMYEL-----YD--PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 97 (118)
Q Consensus 33 ~IYlvDi~eVpdfn~myeL-----~d--P~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDIiE~iyR 97 (118)
.+|.+.-.++++|.+.|+= .. .+.++-+|.. +.|..|.--..|.++|-++....-+.++.
T Consensus 4 r~Y~l~pg~~~~~~~~~~~~~~~~~~~~g~~lvG~~~~-----~~G~~~~~~~l~~y~~~~~r~~~~~a~~~ 70 (102)
T PF07978_consen 4 RTYTLKPGKMDEFLELFEEALIPRQKKHGGKLVGYWVT-----EVGPLNQVVHLWSYDDLAAREEAREALYA 70 (102)
T ss_dssp EEEEESTT-HHHHHHHHHHCCHHHHHHHH-EEEEEEEE-----EESBSSEEEEEEEES-HHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHhCCceeEEEEe-----ccCCCceEEEEEEcCCHHHHHHHHHHHHc
Confidence 3577788888888777763 11 5677788854 78886666678899999999999888874
No 105
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=25.10 E-value=32 Score=23.89 Aligned_cols=36 Identities=14% Similarity=0.470 Sum_probs=25.8
Q ss_pred HhhHHHHHHhHHhhcc--ceEEEEEeCCCccccccccc
Q 033474 15 LEMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYE 50 (118)
Q Consensus 15 m~mDevL~~~ae~v~n--fA~IYlvDi~eVpdfn~mye 50 (118)
..++++|.+.--.+++ -..+|++|+++.+.+|+.|.
T Consensus 55 ~ni~~~L~~aG~~~~dvv~~~vyv~~~~~~~~~~~~~~ 92 (124)
T TIGR00004 55 ENLKAILEAAGLSLDDVVKTTVFLTDLNDFAEVNEVYG 92 (124)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEeChHHHHHHHHHHH
Confidence 3466666665444555 37789999999888888776
No 106
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=24.91 E-value=19 Score=24.57 Aligned_cols=34 Identities=21% Similarity=0.535 Sum_probs=24.5
Q ss_pred hHHHHHHhHHhhccc--eEEEEEeCCCccccccccc
Q 033474 17 MDEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYE 50 (118)
Q Consensus 17 mDevL~~~ae~v~nf--A~IYlvDi~eVpdfn~mye 50 (118)
++++|.+.--.+++. ..||+.|++..+.+|+.|.
T Consensus 38 l~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~ 73 (105)
T cd06150 38 IDALLAEAGSDKSRILSATIWLADMADFAAMNAVWD 73 (105)
T ss_pred HHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHH
Confidence 455555554445553 6789999999999998876
No 107
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=24.82 E-value=24 Score=24.96 Aligned_cols=36 Identities=14% Similarity=0.430 Sum_probs=26.4
Q ss_pred hhHHHHHHhHHh-----hccc--eEEEEEeCCCcccccccccc
Q 033474 16 EMDEVLSSVAET-----IKNF--AVIYLVDISEVPDFNTMYEL 51 (118)
Q Consensus 16 ~mDevL~~~ae~-----v~nf--A~IYlvDi~eVpdfn~myeL 51 (118)
.++++|.+.--. +++. ..||+.|++..+.+|+.|.-
T Consensus 44 ni~~~L~~aG~~~~~~~~~dVvk~~vyl~d~~~~~~~~~v~~~ 86 (114)
T cd06153 44 NIEALLEAAGRGGGAQFLADLLRLKVYLRDREDLPAVRAILAA 86 (114)
T ss_pred HHHHHHHHcCCCCCccchhheeEEEEEEccHHHHHHHHHHHHH
Confidence 466777666554 5554 57899999999999888764
No 108
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=24.43 E-value=2e+02 Score=18.36 Aligned_cols=51 Identities=6% Similarity=0.006 Sum_probs=30.8
Q ss_pred HHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeeccee
Q 033474 11 LILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 66 (118)
Q Consensus 11 ~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm 66 (118)
.-.|-.|-.++.+++++...-+.+ +++++.++-.+ |.+..=+|+++ +++.+
T Consensus 10 C~~C~~~~~~~~~~~~e~~~~~~~--~~v~~~~~a~~-~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 10 CANCQMTEKNVKKAVEELGIDAEF--EKVTDMNEILE-AGVTATPGVAV--DGELV 60 (76)
T ss_pred CcCHHHHHHHHHHHHHHcCCCeEE--EEeCCHHHHHH-cCCCcCCEEEE--CCEEE
Confidence 446999999999999987643444 45555544333 45544345433 66544
No 109
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=23.85 E-value=29 Score=24.69 Aligned_cols=37 Identities=8% Similarity=0.396 Sum_probs=27.3
Q ss_pred HHhhHHHHHHhHHhhccc--eEEEEEeCCCccccccccc
Q 033474 14 NLEMDEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYE 50 (118)
Q Consensus 14 Cm~mDevL~~~ae~v~nf--A~IYlvDi~eVpdfn~mye 50 (118)
...++++|.+.--.+++. ..||++|++..+.+|+.|.
T Consensus 54 ~~ni~~~L~aaG~~~~~Vvk~~vyl~d~~~~~~~~~v~~ 92 (129)
T PRK11401 54 LENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYK 92 (129)
T ss_pred HHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHH
Confidence 345777777765556664 6789999988888888775
No 110
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=23.27 E-value=1e+02 Score=19.62 Aligned_cols=23 Identities=30% Similarity=0.691 Sum_probs=16.6
Q ss_pred hHHHHHHhHHhhccc-----eEEEEEeC
Q 033474 17 MDEVLSSVAETIKNF-----AVIYLVDI 39 (118)
Q Consensus 17 mDevL~~~ae~v~nf-----A~IYlvDi 39 (118)
+||++..+.+.+.+. +.||++|-
T Consensus 2 l~~l~~~i~~~l~~~~~~~~~~l~~~d~ 29 (129)
T PF13492_consen 2 LDELLERILELLRELLGADRAALFLLDE 29 (129)
T ss_dssp HHHHHHHHHHHHHHHST-SEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEEEC
Confidence 578888888776654 67787773
No 111
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.70 E-value=38 Score=24.03 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=26.9
Q ss_pred HHhhHHHHHHhHHhhccc--eEEEEEeCCCcccccccccc
Q 033474 14 NLEMDEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYEL 51 (118)
Q Consensus 14 Cm~mDevL~~~ae~v~nf--A~IYlvDi~eVpdfn~myeL 51 (118)
.-.++++|.+.-- ++. ..||+.|++..+.+|+.|+=
T Consensus 39 l~Ni~~vL~~aG~--~dVvk~~iyl~d~~~~~~~~~v~~~ 76 (118)
T cd06156 39 LQHLERVAKAMNV--QWVLAAVCYVTDESSVPIARSAWSK 76 (118)
T ss_pred HHHHHHHHHHcCC--CCEEEEEEEEcChHHHHHHHHHHHH
Confidence 3456777776554 663 67899999999999998864
No 112
>PRK00831 rpmJ 50S ribosomal protein L36; Validated
Probab=22.58 E-value=61 Score=20.43 Aligned_cols=18 Identities=50% Similarity=0.519 Sum_probs=15.6
Q ss_pred ccCceeEEccCCcccccC
Q 033474 100 RKGRGLVIAPKDYSTKYR 117 (118)
Q Consensus 100 ~kGkglV~SP~dys~~~~ 117 (118)
++|+..|+++.+...++|
T Consensus 22 R~grv~Vick~nprhKqR 39 (41)
T PRK00831 22 RKGRVYVINKKNPRFKAR 39 (41)
T ss_pred eCCEEEEEcCCCCccccc
Confidence 689999999999887765
No 113
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.22 E-value=37 Score=23.97 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=26.2
Q ss_pred hhHHHHHHhH-Hhhccc--eEEEEEeC---CCcccccccccc
Q 033474 16 EMDEVLSSVA-ETIKNF--AVIYLVDI---SEVPDFNTMYEL 51 (118)
Q Consensus 16 ~mDevL~~~a-e~v~nf--A~IYlvDi---~eVpdfn~myeL 51 (118)
.++++|...- -.+++. ..+|++|+ +..+.||+.|+-
T Consensus 42 Nl~~~L~~aG~~~~~dVvk~tvyltd~~~~~~~~~~~~~~~~ 83 (114)
T cd06152 42 NVELALKAAGGKGWEQVYKVNSYHVDIKNEEAFGLMVENFKK 83 (114)
T ss_pred HHHHHHHHhCCCCHHHEEEEEEEEecCCcHHHHHHHHHHHHH
Confidence 4577777776 555553 67899999 678888877753
No 114
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=21.87 E-value=1.2e+02 Score=24.55 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=27.2
Q ss_pred EEeecCChhhHHHHHHHHhhccccCceeEEccCC
Q 033474 78 INWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 111 (118)
Q Consensus 78 in~~~~~kQefIDIiE~iyRgA~kGkglV~SP~d 111 (118)
-.|.++|+..|-++|...|+|...+-|..++--+
T Consensus 18 tvl~ien~~vf~~~V~~l~~~~~~~d~~~~l~d~ 51 (216)
T TIGR01866 18 TILVLENKCVFSKIVQYLYQYESGEDGELILSDH 51 (216)
T ss_pred EEEEEcCHHHHHHHHHHHHccccCCccceeecCc
Confidence 4578999999999999999999667666654333
No 115
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.38 E-value=2.2e+02 Score=24.60 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=48.3
Q ss_pred hHHHHHhhHHHHHHhHHhhccceEEEEEeCCCcccccccccccCcceEEEEeeccee
Q 033474 10 RLILNLEMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 66 (118)
Q Consensus 10 ~~~~Cm~mDevL~~~ae~v~nfA~IYlvDi~eVpdfn~myeL~dP~tvMFFfrnkHm 66 (118)
++=.|-++=.+|.++++.=+-=....-||+++.|+.-.-|.+..-+||.-|=.+|-+
T Consensus 54 ~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpV 110 (304)
T COG3118 54 WCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPV 110 (304)
T ss_pred CCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCc
Confidence 355899999999999998777777788999999999999999887777777777753
No 116
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=21.36 E-value=1.5e+02 Score=18.86 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=22.0
Q ss_pred hHHHHHhhHHHHHHh---HHhhccceEEEEEeCCCccc
Q 033474 10 RLILNLEMDEVLSSV---AETIKNFAVIYLVDISEVPD 44 (118)
Q Consensus 10 ~~~~Cm~mDevL~~~---ae~v~nfA~IYlvDi~eVpd 44 (118)
-...|..|++.+.+- .+.+++-.+..-+|.++-..
T Consensus 28 wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~ 65 (82)
T PF13899_consen 28 WCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP 65 (82)
T ss_dssp TTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH
T ss_pred CCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh
Confidence 456899999988443 33244445556788765443
No 117
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=21.31 E-value=17 Score=27.71 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=35.5
Q ss_pred EecCCCCCceEEeecCChhhHHHHHHHHhhccccCc----eeEEccCCcccccC
Q 033474 68 IDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGR----GLVIAPKDYSTKYR 117 (118)
Q Consensus 68 vD~GTgnnnKin~~~~~kQefIDIiE~iyRgA~kGk----glV~SP~dys~~~~ 117 (118)
+.|-+|+.++=.++-.-..-|.|+|+.-|.=|..+. =|.+||+-|||-+.
T Consensus 70 l~F~~gdYf~~~g~~~~~~~Fl~~V~vrF~iad~~~HYHVPLLlSPygYSTYRG 123 (124)
T COG2351 70 LVFHTGDYFKSRGVQLADPPFLDVVPVRFGIADVDEHYHVPLLLSPYGYSTYRG 123 (124)
T ss_pred EEEEcchhhhccCcccCCCCccceEEEEEEEcCCCCceeeeeEecCcccceecC
Confidence 445577777765543444669999998887775654 48899999998653
No 118
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=21.01 E-value=1.5e+02 Score=21.56 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=34.5
Q ss_pred HHhhccceEEEEEeCCCcc--cccccccc--cCcceEEEEeecceeEEecCCCCCceEEeecCC
Q 033474 25 AETIKNFAVIYLVDISEVP--DFNTMYEL--YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKD 84 (118)
Q Consensus 25 ae~v~nfA~IYlvDi~eVp--dfn~myeL--~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~ 84 (118)
+..++.+.-+.++||+.++ +...+-++ .||.|++.|- .-+|+--|+...+..
T Consensus 24 ~~~l~~~sglv~lDiD~l~~ee~~~~r~~l~~~p~t~~~f~--------SpSG~GvKi~v~~~~ 79 (136)
T PF08800_consen 24 ADNLKAYSGLVVLDIDHLDPEEAEELRQLLFEDPYTLAAFV--------SPSGRGVKIIVPFDY 79 (136)
T ss_pred hhhhhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEE--------cCCCCeEEEEEEecC
Confidence 3456777888999999997 33333333 7899977775 334555777666543
Done!